Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99049.t1 | XP_003605125.2 | 94.4 | 232 | 4 | 1 | 1 | 223 | 1 | 232 | 4.30E-117 | 430.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99049.t1 | G7JEM0 | 94.4 | 232 | 4 | 1 | 1 | 223 | 1 | 232 | 3.1e-117 | 430.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene99049 | -0.810995 | 8.74E-51 | -1.69E-46 |
| MS.gene049369 | MS.gene99049 | -0.818742 | 1.67E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene99049 | -0.804023 | 2.64E-49 | -1.69E-46 |
| MS.gene051692 | MS.gene99049 | -0.802894 | 4.52E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene99049 | -0.804482 | 2.11E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene99049 | -0.804894 | 1.74E-49 | -1.69E-46 |
| MS.gene052805 | MS.gene99049 | 0.803698 | 3.08E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene99049 | 0.817718 | 2.85E-52 | -1.69E-46 |
| MS.gene053449 | MS.gene99049 | -0.816559 | 5.20E-52 | -1.69E-46 |
| MS.gene053813 | MS.gene99049 | -0.807324 | 5.34E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene99049 | -0.814504 | 1.49E-51 | -1.69E-46 |
| MS.gene056410 | MS.gene99049 | -0.812432 | 4.25E-51 | -1.69E-46 |
| MS.gene056611 | MS.gene99049 | -0.814664 | 1.37E-51 | -1.69E-46 |
| MS.gene057129 | MS.gene99049 | -0.805346 | 1.40E-49 | -1.69E-46 |
| MS.gene057331 | MS.gene99049 | -0.80724 | 5.57E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene99049 | -0.807363 | 5.24E-50 | -1.69E-46 |
| MS.gene058459 | MS.gene99049 | -0.807242 | 5.56E-50 | -1.69E-46 |
| MS.gene058978 | MS.gene99049 | 0.803415 | 3.52E-49 | -1.69E-46 |
| MS.gene059402 | MS.gene99049 | 0.805197 | 1.50E-49 | -1.69E-46 |
| MS.gene060799 | MS.gene99049 | -0.80886 | 2.52E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene99049 | -0.807121 | 5.90E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene99049 | -0.803198 | 3.91E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99049.t1 | MTR_4g024370 | 94.397 | 232 | 4 | 1 | 1 | 223 | 1 | 232 | 8.61e-160 | 441 |
| MS.gene99049.t1 | MTR_4g024370 | 94.397 | 232 | 4 | 1 | 1 | 223 | 1 | 232 | 8.61e-160 | 441 |
| MS.gene99049.t1 | MTR_4g102220 | 55.895 | 229 | 89 | 7 | 1 | 222 | 1 | 224 | 6.26e-76 | 228 |
| MS.gene99049.t1 | MTR_5g011800 | 52.814 | 231 | 99 | 5 | 1 | 223 | 1 | 229 | 7.70e-76 | 228 |
| MS.gene99049.t1 | MTR_5g011820 | 51.724 | 232 | 100 | 6 | 1 | 223 | 4 | 232 | 4.88e-71 | 216 |
| MS.gene99049.t1 | MTR_6g060390 | 30.493 | 223 | 136 | 7 | 5 | 222 | 4 | 212 | 9.67e-25 | 97.4 |
| MS.gene99049.t1 | MTR_7g117380 | 30.973 | 226 | 141 | 7 | 5 | 222 | 3 | 221 | 1.03e-24 | 97.8 |
| MS.gene99049.t1 | MTR_1g076800 | 31.739 | 230 | 123 | 10 | 5 | 222 | 4 | 211 | 4.84e-24 | 95.9 |
| MS.gene99049.t1 | MTR_6g060440 | 30.045 | 223 | 135 | 8 | 5 | 222 | 4 | 210 | 2.11e-23 | 94.0 |
| MS.gene99049.t1 | MTR_4g023950 | 29.730 | 222 | 134 | 9 | 5 | 222 | 4 | 207 | 2.74e-21 | 88.2 |
| MS.gene99049.t1 | MTR_7g117380 | 30.055 | 183 | 118 | 6 | 43 | 222 | 4 | 179 | 1.31e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99049.t1 | AT2G45360 | 56.757 | 222 | 88 | 3 | 1 | 222 | 1 | 214 | 7.59e-81 | 241 |
| MS.gene99049.t1 | AT3G60780 | 54.260 | 223 | 95 | 3 | 1 | 222 | 1 | 217 | 1.13e-77 | 233 |
| MS.gene99049.t1 | AT1G62840 | 46.725 | 229 | 111 | 5 | 1 | 223 | 1 | 224 | 1.50e-59 | 187 |
| MS.gene99049.t1 | AT1G12320 | 46.667 | 225 | 101 | 6 | 1 | 221 | 1 | 210 | 1.10e-49 | 161 |
| MS.gene99049.t1 | AT5G62280 | 27.586 | 232 | 143 | 8 | 5 | 222 | 4 | 224 | 9.17e-15 | 71.2 |
Find 63 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATGTTTCTTGGTTTAAA+TGG | 0.134381 | 4.1:+74279724 | MS.gene99049:CDS |
| ATAACATTCTACGATGAATT+TGG | 0.250717 | 4.1:-74279394 | None:intergenic |
| TATACATCATGAAGCTTGTT+TGG | 0.316497 | 4.1:+74278632 | None:intergenic |
| GGCAAAGGTCAAATGTTTCT+TGG | 0.321382 | 4.1:+74279715 | MS.gene99049:CDS |
| TGCAATCTTGACCCTTCATC+TGG | 0.322628 | 4.1:-74279498 | None:intergenic |
| AGGCCAACACTTGCGGCTAT+TGG | 0.324490 | 4.1:-74279429 | None:intergenic |
| TTTGCCTGTTGGAAAGGGTT+TGG | 0.337937 | 4.1:+74279791 | MS.gene99049:CDS |
| TTGTGGTGGATTGTAGGCTT+AGG | 0.346252 | 4.1:+74279622 | MS.gene99049:CDS |
| GAGTACTAGAGGGGCAGTTT+TGG | 0.356533 | 4.1:+74279677 | MS.gene99049:CDS |
| TGTGGTGGATTGTAGGCTTA+GGG | 0.385593 | 4.1:+74279623 | MS.gene99049:CDS |
| TGTGAGAAATTCAAGGAATC+TGG | 0.400122 | 4.1:+74279330 | MS.gene99049:CDS |
| GGGATACACCCATCTCGGCT+AGG | 0.414592 | 4.1:-74279533 | None:intergenic |
| ACGGTGATCAAAAGTCTTGA+TGG | 0.439976 | 4.1:+74279588 | MS.gene99049:CDS |
| ATTGCAGTGTGAGAAATTCA+AGG | 0.454346 | 4.1:+74279323 | MS.gene99049:intron |
| AGTTCTCGGTGAAGCGCAAA+CGG | 0.470434 | 4.1:+74279569 | MS.gene99049:CDS |
| GATGAATTTGGTGTTCCATC+CGG | 0.471577 | 4.1:-74279382 | None:intergenic |
| GGATACACCCATCTCGGCTA+GGG | 0.478620 | 4.1:-74279532 | None:intergenic |
| CACAAAAGCCCTAGCCGAGA+TGG | 0.481827 | 4.1:+74279524 | MS.gene99049:CDS |
| ATATCCAAACCCTTTCCAAC+AGG | 0.485251 | 4.1:-74279795 | None:intergenic |
| AGCTTCAAGTAGTGCTTCAA+AGG | 0.491703 | 4.1:+74279851 | MS.gene99049:CDS |
| GATCAAAAGTCTTGATGGGT+TGG | 0.514141 | 4.1:+74279593 | MS.gene99049:CDS |
| CCGAGAACTATCTCCGGTGG+GGG | 0.517771 | 4.1:-74279555 | None:intergenic |
| GCGGTTGCTGCTCGCAACAC+CGG | 0.525122 | 4.1:+74279453 | MS.gene99049:CDS |
| AGGCACACGTGTGGTTAGAT+CGG | 0.531174 | 4.1:+74279764 | MS.gene99049:CDS |
| TGGAACATGGTTCTTGAAAG+AGG | 0.534421 | 4.1:+74279744 | MS.gene99049:CDS |
| TGTTGCGAGCAGCAACCGCT+AGG | 0.535059 | 4.1:-74279449 | None:intergenic |
| CACCGAGAACTATCTCCGGT+GGG | 0.537897 | 4.1:-74279557 | None:intergenic |
| GATCTATGAGTTTGATCCAA+CGG | 0.544545 | 4.1:-74279884 | None:intergenic |
| GGTTTGGATATTGCTTACAT+AGG | 0.545757 | 4.1:+74279807 | MS.gene99049:CDS |
| ACAAAAGCCCTAGCCGAGAT+GGG | 0.552505 | 4.1:+74279525 | MS.gene99049:CDS |
| GGTGTTCCATCCGGCTGCCA+TGG | 0.552686 | 4.1:-74279373 | None:intergenic |
| CGGTGATCAAAAGTCTTGAT+GGG | 0.555108 | 4.1:+74279589 | MS.gene99049:CDS |
| CTTCTATCATCCATGGCAGC+CGG | 0.557426 | 4.1:+74279363 | MS.gene99049:CDS |
| GCTTACATAGGAAGTAGAAT+CGG | 0.562095 | 4.1:+74279819 | MS.gene99049:CDS |
| GCAATCTTGACCCTTCATCT+GGG | 0.562428 | 4.1:-74279497 | None:intergenic |
| ATCGTAGAATGTTATTCCCA+CGG | 0.567348 | 4.1:+74279402 | MS.gene99049:CDS |
| TATGCACACGTGTCTTGCAC+CGG | 0.569145 | 4.1:-74279472 | None:intergenic |
| GTGTGCATAGTCCCAGATGA+AGG | 0.570105 | 4.1:+74279486 | MS.gene99049:CDS |
| CGAGAACTATCTCCGGTGGG+GGG | 0.571171 | 4.1:-74279554 | None:intergenic |
| TCACCGAGAACTATCTCCGG+TGG | 0.572168 | 4.1:-74279558 | None:intergenic |
| AACCGCTAGGCCAACACTTG+CGG | 0.573043 | 4.1:-74279436 | None:intergenic |
| TAGGGTTCTTAAGGTTGCAA+AGG | 0.574007 | 4.1:+74279653 | MS.gene99049:CDS |
| GGTCCAATAGCCGCAAGTGT+TGG | 0.576902 | 4.1:+74279426 | MS.gene99049:CDS |
| AGCTGAGCTTCTATCATCCA+TGG | 0.578564 | 4.1:+74279356 | MS.gene99049:CDS |
| TATCATCCATGGCAGCCGGA+TGG | 0.579782 | 4.1:+74279367 | MS.gene99049:CDS |
| TGCGGCTATTGGACCGCCGT+GGG | 0.584383 | 4.1:-74279418 | None:intergenic |
| CAAAGGGTACTCCTAGCCGT+TGG | 0.589404 | 4.1:+74279868 | MS.gene99049:CDS |
| GCTTCAAGTAGTGCTTCAAA+GGG | 0.589534 | 4.1:+74279852 | MS.gene99049:CDS |
| ACCGAGAACTATCTCCGGTG+GGG | 0.589901 | 4.1:-74279556 | None:intergenic |
| TTCTTGGTTTAAATGGAACA+TGG | 0.590885 | 4.1:+74279731 | MS.gene99049:CDS |
| GTTGCAAAGGTGAGTACTAG+AGG | 0.597632 | 4.1:+74279666 | MS.gene99049:CDS |
| TTGCAAAGGTGAGTACTAGA+GGG | 0.599847 | 4.1:+74279667 | MS.gene99049:CDS |
| GAGAACTATCTCCGGTGGGG+GGG | 0.611049 | 4.1:-74279553 | None:intergenic |
| TTGCGGCTATTGGACCGCCG+TGG | 0.612852 | 4.1:-74279419 | None:intergenic |
| TGTGCATAGTCCCAGATGAA+GGG | 0.619561 | 4.1:+74279487 | MS.gene99049:CDS |
| ATGAGTTTGATCCAACGGCT+AGG | 0.623677 | 4.1:-74279879 | None:intergenic |
| AGCCGCAAGTGTTGGCCTAG+CGG | 0.628784 | 4.1:+74279434 | MS.gene99049:CDS |
| GCTTCACCGAGAACTATCTC+CGG | 0.641092 | 4.1:-74279561 | None:intergenic |
| TACATAGGAAGTAGAATCGG+TGG | 0.650114 | 4.1:+74279822 | MS.gene99049:CDS |
| ATAGGAAGTAGAATCGGTGG+TGG | 0.655026 | 4.1:+74279825 | MS.gene99049:CDS |
| TGCAAAGGTGAGTACTAGAG+GGG | 0.660954 | 4.1:+74279668 | MS.gene99049:CDS |
| TCTTGAAAGAGGCACACGTG+TGG | 0.689378 | 4.1:+74279755 | MS.gene99049:CDS |
| GTAGAATGTTATTCCCACGG+CGG | 0.814857 | 4.1:+74279405 | MS.gene99049:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATGGTATTAATTATTT+GGG | + | chr4.1:74279293-74279312 | MS.gene99049:intron | 10.0% |
| !! | TTAATATGGTATTAATTATT+TGG | + | chr4.1:74279292-74279311 | MS.gene99049:intron | 10.0% |
| !! | AAAGAAAAAATATTACAAAG+AGG | - | chr4.1:74278846-74278865 | None:intergenic | 15.0% |
| !! | AACTAAAATTGAAAAAAGAA+AGG | - | chr4.1:74278821-74278840 | None:intergenic | 15.0% |
| !! | AAGAAAAAATATTACAAAGA+GGG | - | chr4.1:74278845-74278864 | None:intergenic | 15.0% |
| !! | ACTAAAATTGAAAAAAGAAA+GGG | - | chr4.1:74278820-74278839 | None:intergenic | 15.0% |
| !! | AGAAAAAAAATTATACAAAG+AGG | - | chr4.1:74279121-74279140 | None:intergenic | 15.0% |
| !! | GAAAAAAAATTATACAAAGA+GGG | - | chr4.1:74279120-74279139 | None:intergenic | 15.0% |
| !! | TAGTGATTATAATTTATTCT+TGG | - | chr4.1:74279229-74279248 | None:intergenic | 15.0% |
| !!! | AAATTGATGATGTTTTAATA+TGG | + | chr4.1:74279278-74279297 | MS.gene99049:intron | 15.0% |
| !!! | TTTTAAGACAAATAACAACA+AGG | - | chr4.1:74279258-74279277 | None:intergenic | 20.0% |
| ! | AAACTCATAGATCAAAAATC+AGG | + | chr4.1:74279894-74279913 | MS.gene99049:CDS | 25.0% |
| ! | ATAACATTCTACGATGAATT+TGG | - | chr4.1:74279397-74279416 | None:intergenic | 25.0% |
| ! | CAAATGTTTCTTGGTTTAAA+TGG | + | chr4.1:74279724-74279743 | MS.gene99049:CDS | 25.0% |
| ACGTAAACTTATGTGATTGA+AGG | - | chr4.1:74278999-74279018 | None:intergenic | 30.0% | |
| CATATTATGTGATGTGATTG+CGG | - | chr4.1:74279172-74279191 | None:intergenic | 30.0% | |
| CGTAAACTTATGTGATTGAA+GGG | - | chr4.1:74278998-74279017 | None:intergenic | 30.0% | |
| GTAAACTTATGTGATTGAAG+GGG | - | chr4.1:74278997-74279016 | None:intergenic | 30.0% | |
| TACAAAGAGGGAAATGAAAA+TGG | - | chr4.1:74279108-74279127 | None:intergenic | 30.0% | |
| TTCTTGGTTTAAATGGAACA+TGG | + | chr4.1:74279731-74279750 | MS.gene99049:CDS | 30.0% | |
| ! | AGTGTCTATGTAAGCTTTTA+AGG | - | chr4.1:74278671-74278690 | None:intergenic | 30.0% |
| ! | TTTTGGCATGTAAAAATGCA+TGG | + | chr4.1:74279694-74279713 | MS.gene99049:CDS | 30.0% |
| !! | ATTGATCTTACTTGTTGTTG+AGG | - | chr4.1:74278718-74278737 | None:intergenic | 30.0% |
| AAAGGGACAAAGAAAGAAGA+AGG | - | chr4.1:74278803-74278822 | None:intergenic | 35.0% | |
| AAGGGACAAAGAAAGAAGAA+GGG | - | chr4.1:74278802-74278821 | None:intergenic | 35.0% | |
| ATCGTAGAATGTTATTCCCA+CGG | + | chr4.1:74279402-74279421 | MS.gene99049:CDS | 35.0% | |
| ATTGCAGTGTGAGAAATTCA+AGG | + | chr4.1:74279323-74279342 | MS.gene99049:intron | 35.0% | |
| CATGTAAAAATGCATGGCAA+AGG | + | chr4.1:74279700-74279719 | MS.gene99049:CDS | 35.0% | |
| CGCAATCACATCACATAATA+TGG | + | chr4.1:74279170-74279189 | MS.gene99049:intron | 35.0% | |
| GATCTATGAGTTTGATCCAA+CGG | - | chr4.1:74279887-74279906 | None:intergenic | 35.0% | |
| GCTTACATAGGAAGTAGAAT+CGG | + | chr4.1:74279819-74279838 | MS.gene99049:CDS | 35.0% | |
| GGGAAATGAAAATGGAAAAG+TGG | - | chr4.1:74279100-74279119 | None:intergenic | 35.0% | |
| GGTTTGGATATTGCTTACAT+AGG | + | chr4.1:74279807-74279826 | MS.gene99049:CDS | 35.0% | |
| TGTGAGAAATTCAAGGAATC+TGG | + | chr4.1:74279330-74279349 | MS.gene99049:CDS | 35.0% | |
| !! | TACTTGTTGTTGAGGTTGAA+AGG | - | chr4.1:74278710-74278729 | None:intergenic | 35.0% |
| !!! | ATTTTCTTGTGGTGGATTGT+AGG | + | chr4.1:74279616-74279635 | MS.gene99049:CDS | 35.0% |
| !!! | GTTTTTTTGCCTGTTGGAAA+GGG | + | chr4.1:74279786-74279805 | MS.gene99049:CDS | 35.0% |
| !!! | TAAGCTTTTAAGGCAGTTTC+TGG | - | chr4.1:74278661-74278680 | None:intergenic | 35.0% |
| ACGGTGATCAAAAGTCTTGA+TGG | + | chr4.1:74279588-74279607 | MS.gene99049:CDS | 40.0% | |
| AGCTTCAAGTAGTGCTTCAA+AGG | + | chr4.1:74279851-74279870 | MS.gene99049:CDS | 40.0% | |
| ATATCCAAACCCTTTCCAAC+AGG | - | chr4.1:74279798-74279817 | None:intergenic | 40.0% | |
| CGGTGATCAAAAGTCTTGAT+GGG | + | chr4.1:74279589-74279608 | MS.gene99049:CDS | 40.0% | |
| GCTTCAAGTAGTGCTTCAAA+GGG | + | chr4.1:74279852-74279871 | MS.gene99049:CDS | 40.0% | |
| GGCAAAGGTCAAATGTTTCT+TGG | + | chr4.1:74279715-74279734 | MS.gene99049:CDS | 40.0% | |
| TACATAGGAAGTAGAATCGG+TGG | + | chr4.1:74279822-74279841 | MS.gene99049:CDS | 40.0% | |
| TAGGGTTCTTAAGGTTGCAA+AGG | + | chr4.1:74279653-74279672 | MS.gene99049:CDS | 40.0% | |
| TGGAACATGGTTCTTGAAAG+AGG | + | chr4.1:74279744-74279763 | MS.gene99049:CDS | 40.0% | |
| TTGCAAAGGTGAGTACTAGA+GGG | + | chr4.1:74279667-74279686 | MS.gene99049:CDS | 40.0% | |
| ! | GATCAAAAGTCTTGATGGGT+TGG | + | chr4.1:74279593-74279612 | MS.gene99049:CDS | 40.0% |
| ! | GGATTTTGCTAGGGTTCTTA+AGG | + | chr4.1:74279644-74279663 | MS.gene99049:CDS | 40.0% |
| ! | TAGGCTTAGGGATTTTGCTA+GGG | + | chr4.1:74279635-74279654 | MS.gene99049:CDS | 40.0% |
| !! | GATGAATTTGGTGTTCCATC+CGG | - | chr4.1:74279385-74279404 | None:intergenic | 40.0% |
| !! | TTGAGGTTGAAAGGTGCTTA+CGG | - | chr4.1:74278701-74278720 | None:intergenic | 40.0% |
| !!! | AGATCGGTTTTTTTGCCTGT+TGG | + | chr4.1:74279780-74279799 | MS.gene99049:CDS | 40.0% |
| !!! | GGTTTTTTTGCCTGTTGGAA+AGG | + | chr4.1:74279785-74279804 | MS.gene99049:CDS | 40.0% |
| !!! | TGATGGGTTGGATTTTCTTG+TGG | + | chr4.1:74279605-74279624 | MS.gene99049:CDS | 40.0% |
| AGCTGAGCTTCTATCATCCA+TGG | + | chr4.1:74279356-74279375 | MS.gene99049:CDS | 45.0% | |
| ATAGGAAGTAGAATCGGTGG+TGG | + | chr4.1:74279825-74279844 | MS.gene99049:CDS | 45.0% | |
| ATGAGTTTGATCCAACGGCT+AGG | - | chr4.1:74279882-74279901 | None:intergenic | 45.0% | |
| GCAATCTTGACCCTTCATCT+GGG | - | chr4.1:74279500-74279519 | None:intergenic | 45.0% | |
| GTAGAATGTTATTCCCACGG+CGG | + | chr4.1:74279405-74279424 | MS.gene99049:CDS | 45.0% | |
| GTTGCAAAGGTGAGTACTAG+AGG | + | chr4.1:74279666-74279685 | MS.gene99049:CDS | 45.0% | |
| TGCAAAGGTGAGTACTAGAG+GGG | + | chr4.1:74279668-74279687 | MS.gene99049:CDS | 45.0% | |
| TGCAATCTTGACCCTTCATC+TGG | - | chr4.1:74279501-74279520 | None:intergenic | 45.0% | |
| TGTGCATAGTCCCAGATGAA+GGG | + | chr4.1:74279487-74279506 | MS.gene99049:CDS | 45.0% | |
| TTTGCCTGTTGGAAAGGGTT+TGG | + | chr4.1:74279791-74279810 | MS.gene99049:CDS | 45.0% | |
| ! | GTAGGCTTAGGGATTTTGCT+AGG | + | chr4.1:74279634-74279653 | MS.gene99049:CDS | 45.0% |
| !! | TGGGTTGGATTTTCTTGTGG+TGG | + | chr4.1:74279608-74279627 | MS.gene99049:CDS | 45.0% |
| !! | TGTGGTGGATTGTAGGCTTA+GGG | + | chr4.1:74279623-74279642 | MS.gene99049:CDS | 45.0% |
| !! | TTGTGGTGGATTGTAGGCTT+AGG | + | chr4.1:74279622-74279641 | MS.gene99049:CDS | 45.0% |
| !! | ATAATATATATTTGAAAAAT+TGG | - | chr4.1:74278875-74278894 | None:intergenic | 5.0% |
| ACAAAAGCCCTAGCCGAGAT+GGG | + | chr4.1:74279525-74279544 | MS.gene99049:CDS | 50.0% | |
| AGGCACACGTGTGGTTAGAT+CGG | + | chr4.1:74279764-74279783 | MS.gene99049:CDS | 50.0% | |
| AGTTCTCGGTGAAGCGCAAA+CGG | + | chr4.1:74279569-74279588 | MS.gene99049:CDS | 50.0% | |
| CTTCTATCATCCATGGCAGC+CGG | + | chr4.1:74279363-74279382 | MS.gene99049:CDS | 50.0% | |
| GCTTCACCGAGAACTATCTC+CGG | - | chr4.1:74279564-74279583 | None:intergenic | 50.0% | |
| GTGTGCATAGTCCCAGATGA+AGG | + | chr4.1:74279486-74279505 | MS.gene99049:CDS | 50.0% | |
| TATGCACACGTGTCTTGCAC+CGG | - | chr4.1:74279475-74279494 | None:intergenic | 50.0% | |
| ! | GAGTACTAGAGGGGCAGTTT+TGG | + | chr4.1:74279677-74279696 | MS.gene99049:CDS | 50.0% |
| ! | TCTTGAAAGAGGCACACGTG+TGG | + | chr4.1:74279755-74279774 | MS.gene99049:CDS | 50.0% |
| AACCGCTAGGCCAACACTTG+CGG | - | chr4.1:74279439-74279458 | None:intergenic | 55.0% | |
| ACCGAGAACTATCTCCGGTG+GGG | - | chr4.1:74279559-74279578 | None:intergenic | 55.0% | |
| AGGCCAACACTTGCGGCTAT+TGG | - | chr4.1:74279432-74279451 | None:intergenic | 55.0% | |
| CACAAAAGCCCTAGCCGAGA+TGG | + | chr4.1:74279524-74279543 | MS.gene99049:CDS | 55.0% | |
| CACCGAGAACTATCTCCGGT+GGG | - | chr4.1:74279560-74279579 | None:intergenic | 55.0% | |
| GGATACACCCATCTCGGCTA+GGG | - | chr4.1:74279535-74279554 | None:intergenic | 55.0% | |
| GGTCCAATAGCCGCAAGTGT+TGG | + | chr4.1:74279426-74279445 | MS.gene99049:CDS | 55.0% | |
| TATCATCCATGGCAGCCGGA+TGG | + | chr4.1:74279367-74279386 | MS.gene99049:CDS | 55.0% | |
| TCACCGAGAACTATCTCCGG+TGG | - | chr4.1:74279561-74279580 | None:intergenic | 55.0% | |
| !! | CAAAGGGTACTCCTAGCCGT+TGG | + | chr4.1:74279868-74279887 | MS.gene99049:CDS | 55.0% |
| CCCCCACCGGAGATAGTTCT+CGG | + | chr4.1:74279555-74279574 | MS.gene99049:CDS | 60.0% | |
| CCGAGAACTATCTCCGGTGG+GGG | - | chr4.1:74279558-74279577 | None:intergenic | 60.0% | |
| CGAGAACTATCTCCGGTGGG+GGG | - | chr4.1:74279557-74279576 | None:intergenic | 60.0% | |
| GAGAACTATCTCCGGTGGGG+GGG | - | chr4.1:74279556-74279575 | None:intergenic | 60.0% | |
| GGGATACACCCATCTCGGCT+AGG | - | chr4.1:74279536-74279555 | None:intergenic | 60.0% | |
| TGGGGGGGATACACCCATCT+CGG | - | chr4.1:74279541-74279560 | None:intergenic | 60.0% | |
| TGTTGCGAGCAGCAACCGCT+AGG | - | chr4.1:74279452-74279471 | None:intergenic | 60.0% | |
| !! | AGCCGCAAGTGTTGGCCTAG+CGG | + | chr4.1:74279434-74279453 | MS.gene99049:CDS | 60.0% |
| GATGGGTGTATCCCCCCCAC+CGG | + | chr4.1:74279542-74279561 | MS.gene99049:CDS | 65.0% | |
| GCGGTTGCTGCTCGCAACAC+CGG | + | chr4.1:74279453-74279472 | MS.gene99049:CDS | 65.0% | |
| GGTGTTCCATCCGGCTGCCA+TGG | - | chr4.1:74279376-74279395 | None:intergenic | 65.0% | |
| TGCGGCTATTGGACCGCCGT+GGG | - | chr4.1:74279421-74279440 | None:intergenic | 65.0% | |
| TTGCGGCTATTGGACCGCCG+TGG | - | chr4.1:74279422-74279441 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 74278640 | 74279941 | 74278640 | ID=MS.gene99049 |
| chr4.1 | mRNA | 74278640 | 74279941 | 74278640 | ID=MS.gene99049.t1;Parent=MS.gene99049 |
| chr4.1 | exon | 74278640 | 74278699 | 74278640 | ID=MS.gene99049.t1.exon1;Parent=MS.gene99049.t1 |
| chr4.1 | CDS | 74278640 | 74278699 | 74278640 | ID=cds.MS.gene99049.t1;Parent=MS.gene99049.t1 |
| chr4.1 | exon | 74279330 | 74279941 | 74279330 | ID=MS.gene99049.t1.exon2;Parent=MS.gene99049.t1 |
| chr4.1 | CDS | 74279330 | 74279941 | 74279330 | ID=cds.MS.gene99049.t1;Parent=MS.gene99049.t1 |
| Gene Sequence |
| Protein sequence |
