Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048168.01.T01 | GAU47991.1 | 60.811 | 296 | 71 | 5 | 1 | 265 | 67 | 348 | 3.01E-111 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048168.01.T01 | Q9FPT1 | 45.745 | 94 | 49 | 2 | 14 | 106 | 57 | 149 | 2.36E-20 | 94 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048168.01.T01 | A0A2Z6NUX7 | 60.811 | 296 | 71 | 5 | 1 | 265 | 67 | 348 | 1.44e-111 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048168.01.T01 | MTR_7g107160 | 61.967 | 305 | 45 | 7 | 2 | 265 | 119 | 393 | 1.14e-104 | 311 |
| MsG0080048168.01.T01 | MTR_7g107200 | 42.905 | 296 | 107 | 7 | 1 | 235 | 1 | 295 | 1.49e-67 | 214 |
| MsG0080048168.01.T01 | MTR_1g042160 | 37.458 | 299 | 114 | 10 | 1 | 265 | 1 | 260 | 5.55e-48 | 161 |
| MsG0080048168.01.T01 | MTR_8g011730 | 33.803 | 284 | 123 | 7 | 11 | 237 | 12 | 287 | 1.82e-41 | 145 |
| MsG0080048168.01.T01 | MTR_7g107170 | 49.550 | 111 | 45 | 3 | 157 | 265 | 114 | 215 | 1.31e-22 | 94.0 |
| MsG0080048168.01.T01 | MTR_5g086700 | 41.489 | 94 | 53 | 2 | 14 | 106 | 62 | 154 | 2.40e-20 | 90.9 |
| MsG0080048168.01.T01 | MTR_3g079840 | 40.426 | 94 | 54 | 2 | 14 | 106 | 58 | 150 | 2.45e-20 | 90.9 |
| MsG0080048168.01.T01 | MTR_5g086700 | 41.489 | 94 | 53 | 2 | 14 | 106 | 62 | 154 | 2.62e-20 | 90.9 |
| MsG0080048168.01.T01 | MTR_3g079840 | 40.426 | 94 | 54 | 2 | 14 | 106 | 57 | 149 | 2.69e-20 | 90.5 |
| MsG0080048168.01.T01 | MTR_1g041240 | 39.785 | 93 | 55 | 1 | 14 | 106 | 59 | 150 | 5.06e-19 | 87.0 |
| MsG0080048168.01.T01 | MTR_1g041240 | 39.785 | 93 | 55 | 1 | 14 | 106 | 58 | 149 | 5.21e-19 | 87.0 |
| MsG0080048168.01.T01 | MTR_1g041240 | 39.785 | 93 | 55 | 1 | 14 | 106 | 60 | 151 | 5.26e-19 | 87.0 |
| MsG0080048168.01.T01 | MTR_2g034780 | 43.810 | 105 | 51 | 2 | 164 | 265 | 119 | 218 | 6.10e-19 | 84.3 |
| MsG0080048168.01.T01 | MTR_5g091450 | 38.947 | 95 | 55 | 3 | 14 | 106 | 34 | 127 | 1.71e-16 | 79.3 |
| MsG0080048168.01.T01 | MTR_5g091550 | 36.082 | 97 | 60 | 2 | 11 | 106 | 17 | 112 | 1.89e-15 | 75.9 |
| MsG0080048168.01.T01 | MTR_5g091550 | 36.082 | 97 | 60 | 2 | 11 | 106 | 17 | 112 | 1.94e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048168.01.T01 | AT5G06600 | 45.745 | 94 | 49 | 2 | 14 | 106 | 57 | 149 | 2.04e-21 | 94.0 |
| MsG0080048168.01.T01 | AT5G06600 | 45.745 | 94 | 49 | 2 | 14 | 106 | 57 | 149 | 2.41e-21 | 94.0 |
| MsG0080048168.01.T01 | AT5G06600 | 45.745 | 94 | 49 | 2 | 14 | 106 | 56 | 148 | 2.43e-21 | 94.0 |
| MsG0080048168.01.T01 | AT3G11910 | 46.809 | 94 | 48 | 2 | 14 | 106 | 56 | 148 | 3.29e-21 | 93.6 |
| MsG0080048168.01.T01 | AT3G11910 | 46.809 | 94 | 48 | 2 | 14 | 106 | 56 | 148 | 3.29e-21 | 93.6 |
| MsG0080048168.01.T01 | AT3G11910 | 46.809 | 94 | 48 | 2 | 14 | 106 | 55 | 147 | 3.42e-21 | 93.2 |
| MsG0080048168.01.T01 | AT3G11910 | 46.809 | 94 | 48 | 2 | 14 | 106 | 55 | 147 | 3.42e-21 | 93.2 |
| MsG0080048168.01.T01 | AT3G58360 | 38.298 | 94 | 56 | 2 | 14 | 106 | 9 | 101 | 8.59e-14 | 70.1 |
| MsG0080048168.01.T01 | AT3G58210 | 37.374 | 99 | 58 | 3 | 14 | 109 | 9 | 106 | 6.77e-12 | 65.1 |
| MsG0080048168.01.T01 | AT3G58410 | 35.135 | 74 | 47 | 1 | 14 | 86 | 9 | 82 | 9.79e-11 | 61.6 |
Find 50 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAAGAAGTTGTAAGTTTA+GGG | 0.193564 | contig235end:-704 | MsG0080048168.01.T01:CDS |
| AGAAAAGAAGTTGTAAGTTT+AGG | 0.206519 | contig235end:-705 | MsG0080048168.01.T01:CDS |
| GGAATGGGCGTTCACTGCTT+TGG | 0.299493 | contig235end:-683 | MsG0080048168.01.T01:CDS |
| CTTATGGATTTCAAGGGTTT+AGG | 0.322047 | contig235end:-802 | MsG0080048168.01.T01:CDS |
| GCAAAATCCAGGTGAACTTA+TGG | 0.322911 | contig235end:-818 | MsG0080048168.01.T01:CDS |
| GAATGGGCGTTCACTGCTTT+GGG | 0.331310 | contig235end:-682 | MsG0080048168.01.T01:CDS |
| TAGAGGTCAAACTGAAAATC+TGG | 0.352353 | contig235end:-881 | MsG0080048168.01.T01:CDS |
| AGAATTTCTCTCGCTGGAAC+AGG | 0.353475 | contig235end:-1523 | MsG0080048168.01.T01:CDS |
| GGAAGATACTTCTTTATCAA+TGG | 0.385000 | contig235end:-1392 | MsG0080048168.01.T01:CDS |
| TCACTGCAAGCTCCAATGGC+TGG | 0.398816 | contig235end:-1061 | MsG0080048168.01.T01:CDS |
| GAAGATACTTCTTTATCAAT+GGG | 0.399948 | contig235end:-1391 | MsG0080048168.01.T01:CDS |
| CACTGCAAGCTCCAATGGCT+GGG | 0.419346 | contig235end:-1060 | MsG0080048168.01.T01:CDS |
| TATGAATGACTTATCTTGTA+AGG | 0.428376 | contig235end:-620 | MsG0080048168.01.T01:CDS |
| CCAGGAACTTCTTCTAGCAT+TGG | 0.429065 | contig235end:+841 | MsG0080048168.01.T01:intergenic |
| TTGGGAGGAACTTCAGCCAT+TGG | 0.442477 | contig235end:-584 | MsG0080048168.01.T01:CDS |
| AGGTGAACTTATGGATTTCA+AGG | 0.444860 | contig235end:-809 | MsG0080048168.01.T01:CDS |
| CCAATGCTAGAAGAAGTTCC+TGG | 0.456723 | contig235end:-841 | MsG0080048168.01.T01:CDS |
| TTGTGCTGGGTGGCTATCCA+TGG | 0.471765 | contig235end:-1481 | MsG0080048168.01.T01:intron |
| ATCTGGAAGCTGAAGTCATA+AGG | 0.473546 | contig235end:-864 | MsG0080048168.01.T01:CDS |
| GGATAGCCACCCAGCACAAA+AGG | 0.473589 | contig235end:+1485 | MsG0080048168.01.T01:intergenic |
| AAGTTGTAAGTTTAGGGAAT+GGG | 0.480762 | contig235end:-698 | MsG0080048168.01.T01:CDS |
| GAAGTTGTAAGTTTAGGGAA+TGG | 0.491256 | contig235end:-699 | MsG0080048168.01.T01:CDS |
| AGTTTGACCTCTAGATGTAA+AGG | 0.494100 | contig235end:+891 | MsG0080048168.01.T01:intergenic |
| GAAGTTCCTGGGCAAAATCC+AGG | 0.501134 | contig235end:-829 | MsG0080048168.01.T01:CDS |
| TGCTGGGACTCAACAAGTGA+AGG | 0.505102 | contig235end:+727 | MsG0080048168.01.T01:intergenic |
| AGGTTGAGAATTTCTCTCGC+TGG | 0.511923 | contig235end:-1529 | MsG0080048168.01.T01:CDS |
| GAACACTCTTCTACTAGTAA+TGG | 0.512065 | contig235end:+757 | MsG0080048168.01.T01:intergenic |
| AGATCCAATACCCCAGCCAT+TGG | 0.519689 | contig235end:+1049 | MsG0080048168.01.T01:intergenic |
| GAGTTCACTGCAAGCTCCAA+TGG | 0.520868 | contig235end:-1065 | MsG0080048168.01.T01:CDS |
| GTTTGAGACATTTACATGGA+AGG | 0.540983 | contig235end:-1549 | MsG0080048168.01.T01:CDS |
| GCCACCCAGCACAAAAGGCT+CGG | 0.544185 | contig235end:+1490 | MsG0080048168.01.T01:intergenic |
| CAAACTGCTAACATGTCTAA+AGG | 0.546098 | contig235end:-1327 | MsG0080048168.01.T01:CDS |
| ACTACTTCCTTTACATCTAG+AGG | 0.550454 | contig235end:-898 | MsG0080048168.01.T01:CDS |
| CTGCTAACATGTCTAAAGGA+TGG | 0.552141 | contig235end:-1323 | MsG0080048168.01.T01:CDS |
| TTGAAATCCATAAGTTCACC+TGG | 0.559661 | contig235end:+811 | MsG0080048168.01.T01:intergenic |
| GAATTTCTCTCGCTGGAACA+GGG | 0.561748 | contig235end:-1522 | MsG0080048168.01.T01:CDS |
| GTATCATGTTCAATCAGCCC+TGG | 0.564297 | contig235end:-541 | MsG0080048168.01.T01:CDS |
| TTGTTCTGTTGCTGTCGACC+TGG | 0.565780 | contig235end:+1265 | MsG0080048168.01.T01:intergenic |
| AATTTCTCTCGCTGGAACAG+GGG | 0.566356 | contig235end:-1521 | MsG0080048168.01.T01:CDS |
| TAAGTTGTTTGTTCTTAACC+AGG | 0.569810 | contig235end:-1283 | MsG0080048168.01.T01:CDS |
| GGTGAACTTATGGATTTCAA+GGG | 0.574063 | contig235end:-808 | MsG0080048168.01.T01:CDS |
| GCCAAGACAAATAAAACCAA+TGG | 0.579947 | contig235end:+568 | MsG0080048168.01.T01:intergenic |
| AACAGAACAATCTTCTCTGA+TGG | 0.582000 | contig235end:-1252 | MsG0080048168.01.T01:intron |
| ATTTCTCTCGCTGGAACAGG+GGG | 0.589083 | contig235end:-1520 | MsG0080048168.01.T01:CDS |
| CAATGCTAGAAGAAGTTCCT+GGG | 0.601828 | contig235end:-840 | MsG0080048168.01.T01:CDS |
| ACTGCAAGCTCCAATGGCTG+GGG | 0.608500 | contig235end:-1059 | MsG0080048168.01.T01:intron |
| TATCATGTTCAATCAGCCCT+GGG | 0.620754 | contig235end:-540 | MsG0080048168.01.T01:CDS |
| AGAAGTTTGAGACATTTACA+TGG | 0.623748 | contig235end:-1553 | MsG0080048168.01.T01:CDS |
| GCTGGGACTCAACAAGTGAA+GGG | 0.631377 | contig235end:+728 | MsG0080048168.01.T01:intergenic |
| AAGATACTTCTTTATCAATG+GGG | 0.660346 | contig235end:-1390 | MsG0080048168.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTTTCTTATGG+TGG | - | contig235end:850-869 | MsG0080048168.01.T01:CDS | 15.0% |
| !! | TTCATTCAAATATTATACCA+TGG | + | contig235end:615-634 | MsG0080048168.01.T01:intergenic | 20.0% |
| !!! | AAATTTTTTGGAGAAAATGA+AGG | - | contig235end:1564-1583 | MsG0080048168.01.T01:CDS | 20.0% |
| !!! | TAAGGATCTTCAAATTTTTT+GGG | - | contig235end:1474-1493 | MsG0080048168.01.T01:intron | 20.0% |
| ! | AAGATACTTCTTTATCAATG+GGG | - | contig235end:686-705 | MsG0080048168.01.T01:CDS | 25.0% |
| ! | AATTCCCACATGTTATAATT+TGG | - | contig235end:637-656 | MsG0080048168.01.T01:CDS | 25.0% |
| ! | AGAAAAGAAGTTGTAAGTTT+AGG | - | contig235end:1371-1390 | MsG0080048168.01.T01:CDS | 25.0% |
| ! | ATCACCAAATTATAACATGT+GGG | + | contig235end:644-663 | MsG0080048168.01.T01:intergenic | 25.0% |
| ! | GAAAAGAAGTTGTAAGTTTA+GGG | - | contig235end:1372-1391 | MsG0080048168.01.T01:CDS | 25.0% |
| ! | GAAGATACTTCTTTATCAAT+GGG | - | contig235end:685-704 | MsG0080048168.01.T01:CDS | 25.0% |
| ! | GTAAAAGATGTTTGTATTGT+TGG | - | contig235end:1094-1113 | MsG0080048168.01.T01:intron | 25.0% |
| ! | TATGAATGACTTATCTTGTA+AGG | - | contig235end:1456-1475 | MsG0080048168.01.T01:intron | 25.0% |
| ! | TGAACAACACGTAAAAAAAA+GGG | + | contig235end:888-907 | MsG0080048168.01.T01:intergenic | 25.0% |
| ! | TTGAACAACACGTAAAAAAA+AGG | + | contig235end:889-908 | MsG0080048168.01.T01:intergenic | 25.0% |
| !!! | GTAAGGATCTTCAAATTTTT+TGG | - | contig235end:1473-1492 | MsG0080048168.01.T01:intron | 25.0% |
| !!! | TCTGATTTTGCTTTTGTTTT+AGG | - | contig235end:663-682 | MsG0080048168.01.T01:CDS | 25.0% |
| AAGTTGTAAGTTTAGGGAAT+GGG | - | contig235end:1378-1397 | MsG0080048168.01.T01:CDS | 30.0% | |
| GATCACCAAATTATAACATG+TGG | + | contig235end:645-664 | MsG0080048168.01.T01:intergenic | 30.0% | |
| GGAAGATACTTCTTTATCAA+TGG | - | contig235end:684-703 | MsG0080048168.01.T01:CDS | 30.0% | |
| TAAGTTGTTTGTTCTTAACC+AGG | - | contig235end:793-812 | MsG0080048168.01.T01:CDS | 30.0% | |
| ! | AGAAGTTTGAGACATTTACA+TGG | - | contig235end:523-542 | MsG0080048168.01.T01:CDS | 30.0% |
| ! | CCAAAAAATTTTCATTCCCA+GGG | + | contig235end:1555-1574 | MsG0080048168.01.T01:intergenic | 30.0% |
| ! | TCCAAAAAATTTTCATTCCC+AGG | + | contig235end:1556-1575 | MsG0080048168.01.T01:intergenic | 30.0% |
| !!! | CTTTCACTTTTCTAGTCTTA+AGG | + | contig235end:1435-1454 | MsG0080048168.01.T01:intergenic | 30.0% |
| !!! | TTTTTTGGAGAAAATGAAGG+AGG | - | contig235end:1567-1586 | MsG0080048168.01.T01:CDS | 30.0% |
| AACAGAACAATCTTCTCTGA+TGG | - | contig235end:824-843 | MsG0080048168.01.T01:CDS | 35.0% | |
| ACTACTTCCTTTACATCTAG+AGG | - | contig235end:1178-1197 | MsG0080048168.01.T01:intron | 35.0% | |
| AGGTGAACTTATGGATTTCA+AGG | - | contig235end:1267-1286 | MsG0080048168.01.T01:CDS | 35.0% | |
| AGTTTGACCTCTAGATGTAA+AGG | + | contig235end:1188-1207 | MsG0080048168.01.T01:intergenic | 35.0% | |
| CAAACTGCTAACATGTCTAA+AGG | - | contig235end:749-768 | MsG0080048168.01.T01:CDS | 35.0% | |
| CTTATGGATTTCAAGGGTTT+AGG | - | contig235end:1274-1293 | MsG0080048168.01.T01:CDS | 35.0% | |
| GAACACTCTTCTACTAGTAA+TGG | + | contig235end:1322-1341 | MsG0080048168.01.T01:intergenic | 35.0% | |
| GAAGTTGTAAGTTTAGGGAA+TGG | - | contig235end:1377-1396 | MsG0080048168.01.T01:CDS | 35.0% | |
| GCCAAGACAAATAAAACCAA+TGG | + | contig235end:1511-1530 | MsG0080048168.01.T01:intergenic | 35.0% | |
| GGTGAACTTATGGATTTCAA+GGG | - | contig235end:1268-1287 | MsG0080048168.01.T01:CDS | 35.0% | |
| TAGAGGTCAAACTGAAAATC+TGG | - | contig235end:1195-1214 | MsG0080048168.01.T01:intron | 35.0% | |
| TGTTTGTATTGTTGGTGTAG+AGG | - | contig235end:1102-1121 | MsG0080048168.01.T01:intron | 35.0% | |
| TTCTTCATGATCCTCATAGT+GGG | - | contig235end:1066-1085 | MsG0080048168.01.T01:CDS | 35.0% | |
| TTGAAATCCATAAGTTCACC+TGG | + | contig235end:1268-1287 | MsG0080048168.01.T01:intergenic | 35.0% | |
| ! | ACTTACAACTTCTTTTCTGC+TGG | + | contig235end:1369-1388 | MsG0080048168.01.T01:intergenic | 35.0% |
| ! | CTTACAACTTCTTTTCTGCT+GGG | + | contig235end:1368-1387 | MsG0080048168.01.T01:intergenic | 35.0% |
| ! | GTTTGAGACATTTACATGGA+AGG | - | contig235end:527-546 | MsG0080048168.01.T01:CDS | 35.0% |
| ! | TTGATTCATGTTTTTCCCAG+AGG | - | contig235end:980-999 | MsG0080048168.01.T01:intron | 35.0% |
| ! | TTTTACAAGAACCCACTATG+AGG | + | contig235end:1080-1099 | MsG0080048168.01.T01:intergenic | 35.0% |
| !!! | CCCTGGGAATGAAAATTTTT+TGG | - | contig235end:1552-1571 | MsG0080048168.01.T01:CDS | 35.0% |
| !!! | GCCATTGGTTTTATTTGTCT+TGG | - | contig235end:1507-1526 | MsG0080048168.01.T01:CDS | 35.0% |
| !!! | GGATCTTCAAATTTTTTGGG+AGG | - | contig235end:1477-1496 | MsG0080048168.01.T01:intron | 35.0% |
| ATCTGGAAGCTGAAGTCATA+AGG | - | contig235end:1212-1231 | MsG0080048168.01.T01:intron | 40.0% | |
| CAATGCTAGAAGAAGTTCCT+GGG | - | contig235end:1236-1255 | MsG0080048168.01.T01:intron | 40.0% | |
| CTGCTAACATGTCTAAAGGA+TGG | - | contig235end:753-772 | MsG0080048168.01.T01:CDS | 40.0% | |
| GCAAAATCCAGGTGAACTTA+TGG | - | contig235end:1258-1277 | MsG0080048168.01.T01:CDS | 40.0% | |
| GTTCTTCATGATCCTCATAG+TGG | - | contig235end:1065-1084 | MsG0080048168.01.T01:CDS | 40.0% | |
| TATCATGTTCAATCAGCCCT+GGG | - | contig235end:1536-1555 | MsG0080048168.01.T01:CDS | 40.0% | |
| AATTTCTCTCGCTGGAACAG+GGG | - | contig235end:555-574 | MsG0080048168.01.T01:CDS | 45.0% | |
| AGAATTTCTCTCGCTGGAAC+AGG | - | contig235end:553-572 | MsG0080048168.01.T01:CDS | 45.0% | |
| AGGTTGAGAATTTCTCTCGC+TGG | - | contig235end:547-566 | MsG0080048168.01.T01:CDS | 45.0% | |
| CCAATGCTAGAAGAAGTTCC+TGG | - | contig235end:1235-1254 | MsG0080048168.01.T01:intron | 45.0% | |
| CCAGGAACTTCTTCTAGCAT+TGG | + | contig235end:1238-1257 | MsG0080048168.01.T01:intergenic | 45.0% | |
| GAATTTCTCTCGCTGGAACA+GGG | - | contig235end:554-573 | MsG0080048168.01.T01:CDS | 45.0% | |
| GTATCATGTTCAATCAGCCC+TGG | - | contig235end:1535-1554 | MsG0080048168.01.T01:CDS | 45.0% | |
| !!! | TATTTTTTTTTATTTTCTTA+TGG | - | contig235end:847-866 | MsG0080048168.01.T01:CDS | 5.0% |
| AGATCCAATACCCCAGCCAT+TGG | + | contig235end:1030-1049 | MsG0080048168.01.T01:intergenic | 50.0% | |
| ATTTCTCTCGCTGGAACAGG+GGG | - | contig235end:556-575 | MsG0080048168.01.T01:CDS | 50.0% | |
| GAAGTTCCTGGGCAAAATCC+AGG | - | contig235end:1247-1266 | MsG0080048168.01.T01:intron | 50.0% | |
| GAATGGGCGTTCACTGCTTT+GGG | - | contig235end:1394-1413 | MsG0080048168.01.T01:CDS | 50.0% | |
| GAGTTCACTGCAAGCTCCAA+TGG | - | contig235end:1011-1030 | MsG0080048168.01.T01:intron | 50.0% | |
| GCTGGGACTCAACAAGTGAA+GGG | + | contig235end:1351-1370 | MsG0080048168.01.T01:intergenic | 50.0% | |
| TGAACTCGTGTTGAGCCTCT+GGG | + | contig235end:998-1017 | MsG0080048168.01.T01:intergenic | 50.0% | |
| TGCTGGGACTCAACAAGTGA+AGG | + | contig235end:1352-1371 | MsG0080048168.01.T01:intergenic | 50.0% | |
| TTGGGAGGAACTTCAGCCAT+TGG | - | contig235end:1492-1511 | MsG0080048168.01.T01:CDS | 50.0% | |
| TTGTTCTGTTGCTGTCGACC+TGG | + | contig235end:814-833 | MsG0080048168.01.T01:intergenic | 50.0% | |
| ! | AGTTCACCTGGATTTTGCCC+AGG | + | contig235end:1256-1275 | MsG0080048168.01.T01:intergenic | 50.0% |
| ! | TACTCCGAGCCTTTTGTGCT+GGG | - | contig235end:582-601 | MsG0080048168.01.T01:CDS | 50.0% |
| ! | TTACTCCGAGCCTTTTGTGC+TGG | - | contig235end:581-600 | MsG0080048168.01.T01:CDS | 50.0% |
| !! | TGGCTGGGGTATTGGATCTT+TGG | - | contig235end:1031-1050 | MsG0080048168.01.T01:intron | 50.0% |
| ACTGCAAGCTCCAATGGCTG+GGG | - | contig235end:1017-1036 | MsG0080048168.01.T01:intron | 55.0% | |
| AGCTCCAATGGCTGGGGTAT+TGG | - | contig235end:1023-1042 | MsG0080048168.01.T01:intron | 55.0% | |
| CACTGCAAGCTCCAATGGCT+GGG | - | contig235end:1016-1035 | MsG0080048168.01.T01:intron | 55.0% | |
| GGAATGGGCGTTCACTGCTT+TGG | - | contig235end:1393-1412 | MsG0080048168.01.T01:CDS | 55.0% | |
| GGATAGCCACCCAGCACAAA+AGG | + | contig235end:594-613 | MsG0080048168.01.T01:intergenic | 55.0% | |
| GTGAACTCGTGTTGAGCCTC+TGG | + | contig235end:999-1018 | MsG0080048168.01.T01:intergenic | 55.0% | |
| TCACTGCAAGCTCCAATGGC+TGG | - | contig235end:1015-1034 | MsG0080048168.01.T01:intron | 55.0% | |
| TTGTGCTGGGTGGCTATCCA+TGG | - | contig235end:595-614 | MsG0080048168.01.T01:CDS | 55.0% | |
| GCCACCCAGCACAAAAGGCT+CGG | + | contig235end:589-608 | MsG0080048168.01.T01:intergenic | 60.0% | |
| ! | TCCGAGCCTTTTGTGCTGGG+TGG | - | contig235end:585-604 | MsG0080048168.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig235end | gene | 498 | 1600 | 498 | ID=MsG0080048168.01;Name=MsG0080048168.01 |
| contig235end | mRNA | 498 | 1600 | 498 | ID=MsG0080048168.01.T01;Parent=MsG0080048168.01;Name=MsG0080048168.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|0.66|0.25|4|0|265 |
| contig235end | exon | 1482 | 1600 | 1482 | ID=MsG0080048168.01.T01:exon:987;Parent=MsG0080048168.01.T01 |
| contig235end | exon | 1253 | 1413 | 1253 | ID=MsG0080048168.01.T01:exon:988;Parent=MsG0080048168.01.T01 |
| contig235end | exon | 1060 | 1098 | 1060 | ID=MsG0080048168.01.T01:exon:989;Parent=MsG0080048168.01.T01 |
| contig235end | exon | 498 | 976 | 498 | ID=MsG0080048168.01.T01:exon:990;Parent=MsG0080048168.01.T01 |
| contig235end | CDS | 1482 | 1600 | 1482 | ID=MsG0080048168.01.T01:cds;Parent=MsG0080048168.01.T01 |
| contig235end | CDS | 1253 | 1413 | 1253 | ID=MsG0080048168.01.T01:cds;Parent=MsG0080048168.01.T01 |
| contig235end | CDS | 1060 | 1098 | 1060 | ID=MsG0080048168.01.T01:cds;Parent=MsG0080048168.01.T01 |
| contig235end | CDS | 498 | 976 | 498 | ID=MsG0080048168.01.T01:cds;Parent=MsG0080048168.01.T01 |
| Gene Sequence |
| Protein sequence |
