Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001760.01.T01 | XP_003589944.1 | 75.575 | 348 | 45 | 2 | 1 | 348 | 1 | 308 | 0 | 517 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001760.01.T01 | Q9FPT1 | 42.675 | 157 | 61 | 2 | 13 | 169 | 56 | 183 | 4.33E-33 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001760.01.T01 | G7I3Q3 | 75.575 | 348 | 45 | 2 | 1 | 348 | 1 | 308 | 0.0 | 517 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001760.01.T01 | MTR_1g042160 | 75.575 | 348 | 45 | 2 | 1 | 348 | 1 | 308 | 0.0 | 517 |
| MsG0180001760.01.T01 | MTR_7g107200 | 39.803 | 407 | 157 | 6 | 1 | 350 | 1 | 376 | 5.92e-97 | 293 |
| MsG0180001760.01.T01 | MTR_7g107160 | 41.341 | 358 | 166 | 6 | 2 | 348 | 119 | 443 | 7.52e-77 | 243 |
| MsG0180001760.01.T01 | MTR_7g107160 | 48.201 | 139 | 45 | 1 | 69 | 207 | 1 | 112 | 9.22e-35 | 132 |
| MsG0180001760.01.T01 | MTR_7g107170 | 59.006 | 161 | 52 | 2 | 208 | 354 | 109 | 269 | 2.09e-54 | 180 |
| MsG0180001760.01.T01 | MTR_7g107170 | 54.023 | 87 | 40 | 0 | 253 | 339 | 1 | 87 | 9.77e-23 | 96.3 |
| MsG0180001760.01.T01 | MTR_8g011730 | 28.721 | 383 | 190 | 8 | 12 | 351 | 13 | 355 | 2.90e-40 | 145 |
| MsG0180001760.01.T01 | MTR_3g079840 | 40.127 | 157 | 65 | 2 | 13 | 169 | 56 | 183 | 1.18e-34 | 135 |
| MsG0180001760.01.T01 | MTR_3g079840 | 40.127 | 157 | 65 | 2 | 13 | 169 | 57 | 184 | 1.19e-34 | 135 |
| MsG0180001760.01.T01 | MTR_5g086700 | 38.854 | 157 | 67 | 2 | 13 | 169 | 61 | 188 | 9.16e-34 | 132 |
| MsG0180001760.01.T01 | MTR_5g086700 | 38.854 | 157 | 67 | 2 | 13 | 169 | 61 | 188 | 9.33e-34 | 132 |
| MsG0180001760.01.T01 | MTR_1g041240 | 37.342 | 158 | 69 | 3 | 13 | 170 | 57 | 184 | 1.07e-28 | 117 |
| MsG0180001760.01.T01 | MTR_1g041240 | 37.342 | 158 | 69 | 3 | 13 | 170 | 59 | 186 | 1.08e-28 | 117 |
| MsG0180001760.01.T01 | MTR_1g041240 | 37.342 | 158 | 69 | 3 | 13 | 170 | 58 | 185 | 1.09e-28 | 117 |
| MsG0180001760.01.T01 | MTR_5g091450 | 34.641 | 153 | 72 | 2 | 13 | 165 | 33 | 157 | 2.12e-27 | 114 |
| MsG0180001760.01.T01 | MTR_5g091180 | 32.927 | 164 | 80 | 3 | 13 | 176 | 46 | 179 | 2.13e-21 | 95.9 |
| MsG0180001760.01.T01 | MTR_5g091550 | 31.818 | 154 | 76 | 3 | 12 | 165 | 18 | 142 | 3.83e-20 | 91.7 |
| MsG0180001760.01.T01 | MTR_5g091550 | 31.818 | 154 | 76 | 3 | 12 | 165 | 18 | 142 | 4.09e-20 | 91.7 |
| MsG0180001760.01.T01 | MTR_3g106700 | 27.976 | 168 | 85 | 3 | 13 | 171 | 406 | 546 | 1.15e-15 | 79.0 |
| MsG0180001760.01.T01 | MTR_2g034780 | 34.586 | 133 | 70 | 5 | 220 | 348 | 140 | 259 | 1.19e-11 | 64.7 |
| MsG0180001760.01.T01 | MTR_1g044450 | 27.329 | 161 | 82 | 5 | 9 | 167 | 61 | 188 | 1.47e-11 | 66.2 |
| MsG0180001760.01.T01 | MTR_4g123750 | 20.556 | 180 | 114 | 3 | 14 | 188 | 20 | 175 | 3.63e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001760.01.T01 | AT5G06600 | 42.675 | 157 | 61 | 2 | 13 | 169 | 56 | 183 | 3.84e-34 | 134 |
| MsG0180001760.01.T01 | AT5G06600 | 42.675 | 157 | 61 | 2 | 13 | 169 | 56 | 183 | 4.41e-34 | 134 |
| MsG0180001760.01.T01 | AT5G06600 | 42.675 | 157 | 61 | 2 | 13 | 169 | 55 | 182 | 4.46e-34 | 133 |
| MsG0180001760.01.T01 | AT3G11910 | 41.401 | 157 | 63 | 2 | 13 | 169 | 54 | 181 | 6.09e-33 | 130 |
| MsG0180001760.01.T01 | AT3G11910 | 41.401 | 157 | 63 | 2 | 13 | 169 | 54 | 181 | 6.09e-33 | 130 |
| MsG0180001760.01.T01 | AT3G11910 | 41.401 | 157 | 63 | 2 | 13 | 169 | 55 | 182 | 6.09e-33 | 130 |
| MsG0180001760.01.T01 | AT3G11910 | 41.401 | 157 | 63 | 2 | 13 | 169 | 55 | 182 | 6.09e-33 | 130 |
| MsG0180001760.01.T01 | AT3G58250 | 24.478 | 335 | 197 | 8 | 12 | 337 | 9 | 296 | 1.13e-23 | 100 |
| MsG0180001760.01.T01 | AT3G58270 | 32.704 | 159 | 78 | 2 | 9 | 167 | 4 | 133 | 2.99e-21 | 93.6 |
| MsG0180001760.01.T01 | AT3G58270 | 32.704 | 159 | 78 | 2 | 9 | 167 | 4 | 133 | 2.99e-21 | 93.6 |
| MsG0180001760.01.T01 | AT3G58270 | 32.704 | 159 | 78 | 2 | 9 | 167 | 4 | 133 | 2.99e-21 | 93.6 |
| MsG0180001760.01.T01 | AT3G58340 | 27.922 | 154 | 82 | 2 | 12 | 165 | 7 | 131 | 7.59e-17 | 80.5 |
| MsG0180001760.01.T01 | AT3G58340 | 27.922 | 154 | 82 | 2 | 12 | 165 | 7 | 131 | 8.42e-17 | 80.5 |
| MsG0180001760.01.T01 | AT3G58360 | 24.615 | 325 | 196 | 7 | 9 | 323 | 4 | 289 | 9.36e-17 | 80.1 |
| MsG0180001760.01.T01 | AT3G58370 | 28.931 | 159 | 87 | 2 | 7 | 165 | 3 | 135 | 6.39e-15 | 74.7 |
| MsG0180001760.01.T01 | AT2G05410 | 29.605 | 152 | 77 | 3 | 5 | 156 | 2 | 123 | 1.86e-14 | 73.6 |
| MsG0180001760.01.T01 | AT3G58210 | 27.097 | 155 | 86 | 1 | 13 | 167 | 8 | 135 | 6.49e-14 | 72.4 |
| MsG0180001760.01.T01 | AT3G58350 | 26.923 | 156 | 88 | 2 | 12 | 167 | 7 | 136 | 1.65e-13 | 70.9 |
| MsG0180001760.01.T01 | AT3G58350 | 26.923 | 156 | 88 | 2 | 12 | 167 | 7 | 136 | 1.65e-13 | 70.9 |
| MsG0180001760.01.T01 | AT2G25320 | 26.786 | 168 | 86 | 4 | 13 | 171 | 404 | 543 | 3.66e-13 | 71.2 |
| MsG0180001760.01.T01 | AT2G25320 | 26.786 | 168 | 86 | 4 | 13 | 171 | 405 | 544 | 3.69e-13 | 71.2 |
| MsG0180001760.01.T01 | AT2G25320 | 26.786 | 168 | 86 | 4 | 13 | 171 | 405 | 544 | 4.55e-13 | 71.2 |
| MsG0180001760.01.T01 | AT3G58410 | 27.389 | 157 | 82 | 3 | 9 | 165 | 4 | 128 | 9.24e-13 | 68.6 |
| MsG0180001760.01.T01 | AT3G17380 | 25.000 | 164 | 91 | 3 | 17 | 175 | 25 | 161 | 5.62e-12 | 66.2 |
| MsG0180001760.01.T01 | AT3G58260 | 27.329 | 161 | 88 | 4 | 9 | 167 | 4 | 137 | 7.23e-12 | 66.2 |
| MsG0180001760.01.T01 | AT3G27040 | 26.923 | 156 | 86 | 3 | 12 | 167 | 8 | 135 | 1.24e-11 | 64.7 |
| MsG0180001760.01.T01 | AT2G25330 | 26.786 | 168 | 87 | 3 | 13 | 171 | 359 | 499 | 4.46e-11 | 64.7 |
| MsG0180001760.01.T01 | AT3G58410 | 35.106 | 94 | 55 | 2 | 9 | 102 | 25 | 112 | 5.41e-11 | 63.5 |
| MsG0180001760.01.T01 | AT3G58440 | 27.673 | 159 | 84 | 5 | 12 | 170 | 9 | 136 | 7.99e-11 | 63.9 |
| MsG0180001760.01.T01 | AT2G01790 | 33.673 | 98 | 51 | 2 | 16 | 99 | 11 | 108 | 8.93e-11 | 62.4 |
Find 87 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAAAGAGTTTCAATATT+TGG | 0.072812 | 1:-26489900 | None:intergenic |
| GAAAATAAGGTATCATATTT+TGG | 0.142958 | 1:-26490422 | None:intergenic |
| TTGCATGTTCATTATGCTTT+AGG | 0.157905 | 1:+26490113 | MsG0180001760.01.T01:CDS |
| CATAGATTTATAGCTAAATT+TGG | 0.161848 | 1:+26490336 | MsG0180001760.01.T01:exon |
| CGACCAGTTACATATATATT+TGG | 0.208741 | 1:+26489308 | MsG0180001760.01.T01:CDS |
| CACATTACAGGTGGAAAATA+AGG | 0.255441 | 1:-26490435 | None:intergenic |
| TGCATGTTCATTATGCTTTA+GGG | 0.269895 | 1:+26490114 | MsG0180001760.01.T01:CDS |
| GTAAAAGAGTTTCAATATTT+GGG | 0.278091 | 1:-26489899 | None:intergenic |
| GAAGGAGAGCATGGTAGTTC+TGG | 0.285409 | 1:+26490178 | MsG0180001760.01.T01:CDS |
| TAAAACTTGAAGATCCTTAC+AGG | 0.295125 | 1:-26490045 | None:intergenic |
| GACCTTCAGGCTTTGCTGTT+AGG | 0.317626 | 1:-26489872 | None:intergenic |
| TCCGAGCCTTTCGTCCTTAG+TGG | 0.329886 | 1:+26489121 | MsG0180001760.01.T01:CDS |
| ATATTTGGGCCTCGACCTTC+AGG | 0.334872 | 1:-26489885 | None:intergenic |
| GTAGATTTAGATTCTGAATT+GGG | 0.350592 | 1:+26490296 | MsG0180001760.01.T01:CDS |
| GGCTTGCTCGTTCATGTCTC+TGG | 0.355614 | 1:-26490024 | None:intergenic |
| CTGCACTACTCTTCCCCTTT+GGG | 0.355811 | 1:-26489284 | None:intergenic |
| CTTACATTTGGTAGTCAAAC+TGG | 0.355935 | 1:+26489831 | MsG0180001760.01.T01:CDS |
| AGTAGATTTAGATTCTGAAT+TGG | 0.356087 | 1:+26490295 | MsG0180001760.01.T01:CDS |
| TCAGTGCAAGTGCGGATGAC+TGG | 0.376614 | 1:+26489658 | MsG0180001760.01.T01:CDS |
| GTGAATGATACTTGTATTGT+TGG | 0.377087 | 1:+26489738 | MsG0180001760.01.T01:CDS |
| ACTGCACTACTCTTCCCCTT+TGG | 0.377114 | 1:-26489285 | None:intergenic |
| AAGGACTTAAAACACATTAC+AGG | 0.380886 | 1:-26490447 | None:intergenic |
| ATCCCTTCATCCCTTACATT+TGG | 0.392215 | 1:+26489819 | MsG0180001760.01.T01:CDS |
| CCTCCAAATATATATGTAAC+TGG | 0.394155 | 1:-26489311 | None:intergenic |
| GAGTCGGTGTTTGCTGCATT+AGG | 0.394888 | 1:+26489969 | MsG0180001760.01.T01:CDS |
| TCTTCTCGAGTTTACAGAAA+TGG | 0.396026 | 1:+26489012 | MsG0180001760.01.T01:exon |
| AATTTAAATATGATATTACT+TGG | 0.397489 | 1:+26490084 | MsG0180001760.01.T01:CDS |
| CAAATTTAGCTATAAATCTA+TGG | 0.399100 | 1:-26490335 | None:intergenic |
| TTAGCTGAGCTTCGTGATCC+TGG | 0.405889 | 1:+26489702 | MsG0180001760.01.T01:CDS |
| AGAGACTTGTTGAAATCAAA+AGG | 0.412312 | 1:+26490263 | MsG0180001760.01.T01:CDS |
| GGTAGTTCTGGAGCTCGAAT+TGG | 0.424459 | 1:+26490190 | MsG0180001760.01.T01:CDS |
| CTACCAAATGTAAGGGATGA+AGG | 0.432592 | 1:-26489822 | None:intergenic |
| CAATTCTTATTTAATAGAAA+AGG | 0.440366 | 1:-26488968 | None:intergenic |
| AAGATATGTGGAGAAAGCTT+TGG | 0.447649 | 1:+26490142 | MsG0180001760.01.T01:CDS |
| CATGAACGAGCAAGCCTGTA+AGG | 0.453721 | 1:+26490031 | MsG0180001760.01.T01:CDS |
| TGGTAGTCAAACTGGTCAAA+TGG | 0.456911 | 1:+26489839 | MsG0180001760.01.T01:CDS |
| CAGTTTGACTACCAAATGTA+AGG | 0.457602 | 1:-26489830 | None:intergenic |
| CAGTGCAAGTGCGGATGACT+GGG | 0.461525 | 1:+26489659 | MsG0180001760.01.T01:CDS |
| AGGATTCTTCTCTTCCCAAA+GGG | 0.475030 | 1:+26489270 | MsG0180001760.01.T01:CDS |
| GCAAACACCGACTCTGCGTC+AGG | 0.489005 | 1:-26489960 | None:intergenic |
| TTAGATTCTGAATTGGGATG+TGG | 0.494944 | 1:+26490302 | MsG0180001760.01.T01:CDS |
| TAGATTCTGAATTGGGATGT+GGG | 0.496207 | 1:+26490303 | MsG0180001760.01.T01:CDS |
| TTTGGAGGCTGAAAAGTTGA+AGG | 0.501303 | 1:+26490160 | MsG0180001760.01.T01:CDS |
| CTGAGCTTCGTGATCCTGGA+AGG | 0.505508 | 1:+26489706 | MsG0180001760.01.T01:CDS |
| GAGCTTCGTGATCCTGGAAG+GGG | 0.508813 | 1:+26489708 | MsG0180001760.01.T01:CDS |
| GAATTGGGATGTGGGAGTTG+TGG | 0.508997 | 1:+26490311 | MsG0180001760.01.T01:CDS |
| CCAGTTACATATATATTTGG+AGG | 0.512397 | 1:+26489311 | MsG0180001760.01.T01:CDS |
| ATATGTGGAGAAAGCTTTGG+AGG | 0.523862 | 1:+26490145 | MsG0180001760.01.T01:CDS |
| ACTTTGCAAGACGGAGGAAG+AGG | 0.526791 | 1:-26489444 | None:intergenic |
| TCAAACTGGTCAAATGGAAG+TGG | 0.534780 | 1:+26489845 | MsG0180001760.01.T01:CDS |
| GTGGCTACGCAAGAGTCATA+TGG | 0.540990 | 1:+26489492 | MsG0180001760.01.T01:CDS |
| GCTCGAATTGGAAAGGCTAA+AGG | 0.542142 | 1:+26490202 | MsG0180001760.01.T01:CDS |
| TGAGCTTCGTGATCCTGGAA+GGG | 0.552806 | 1:+26489707 | MsG0180001760.01.T01:CDS |
| CACTTAATCACTTTGCAAGA+CGG | 0.560078 | 1:-26489453 | None:intergenic |
| TCTCGAGTTTACAGAAATGG+AGG | 0.560460 | 1:+26489015 | MsG0180001760.01.T01:exon |
| TACCAAATGTAAGGGATGAA+GGG | 0.561982 | 1:-26489821 | None:intergenic |
| CCGCACTTGCACTGAACTCG+TGG | 0.577607 | 1:-26489650 | None:intergenic |
| CTTACCATGGATATCCACTA+AGG | 0.579500 | 1:-26489135 | None:intergenic |
| GAAGACTGCTAATATGTCTG+AGG | 0.579958 | 1:+26489338 | MsG0180001760.01.T01:CDS |
| TGAAAAGTTGAAGGAGAGCA+TGG | 0.580493 | 1:+26490169 | MsG0180001760.01.T01:CDS |
| TGATACTTGTATTGTTGGTG+TGG | 0.581139 | 1:+26489743 | MsG0180001760.01.T01:CDS |
| ACAGCAAAGCCTGAAGGTCG+AGG | 0.581162 | 1:+26489876 | MsG0180001760.01.T01:CDS |
| TAACTTATCAACATTCAAGC+GGG | 0.583379 | 1:-26489095 | None:intergenic |
| TCCACTAAGGACGAAAGGCT+CGG | 0.589489 | 1:-26489122 | None:intergenic |
| CTGCTAATATGTCTGAGGGA+TGG | 0.590956 | 1:+26489343 | MsG0180001760.01.T01:CDS |
| GAGGATTCTTCTCTTCCCAA+AGG | 0.594512 | 1:+26489269 | MsG0180001760.01.T01:CDS |
| TTCTGGAGCTCGAATTGGAA+AGG | 0.594903 | 1:+26490195 | MsG0180001760.01.T01:CDS |
| CTCCTAACAGCAAAGCCTGA+AGG | 0.596347 | 1:+26489870 | MsG0180001760.01.T01:CDS |
| TTCTTCACTTGTTTCTACTG+AGG | 0.598050 | 1:+26489926 | MsG0180001760.01.T01:CDS |
| TGCTGTATTCAATCAAGTCG+AGG | 0.599719 | 1:+26489389 | MsG0180001760.01.T01:CDS |
| AGCTTCGTGATCCTGGAAGG+GGG | 0.600238 | 1:+26489709 | MsG0180001760.01.T01:CDS |
| TCGTCCTTAGTGGATATCCA+TGG | 0.600369 | 1:+26489131 | MsG0180001760.01.T01:CDS |
| TAAAGATCCTGACGCAGAGT+CGG | 0.611168 | 1:+26489953 | MsG0180001760.01.T01:CDS |
| GGATATCCACTAAGGACGAA+AGG | 0.618904 | 1:-26489127 | None:intergenic |
| CTCGAGTTTACAGAAATGGA+GGG | 0.619993 | 1:+26489016 | MsG0180001760.01.T01:exon |
| AAGACTGCTAATATGTCTGA+GGG | 0.621113 | 1:+26489339 | MsG0180001760.01.T01:CDS |
| GACTTAAAACACATTACAGG+TGG | 0.624725 | 1:-26490444 | None:intergenic |
| AGTTTGACTACCAAATGTAA+GGG | 0.630632 | 1:-26489829 | None:intergenic |
| CCACGAGTTCAGTGCAAGTG+CGG | 0.635487 | 1:+26489650 | MsG0180001760.01.T01:CDS |
| GTGTATGTTTGATTTCATTG+TGG | 0.636426 | 1:+26489473 | MsG0180001760.01.T01:CDS |
| GACAACAGAACAATCACAGA+AGG | 0.639890 | 1:+26489411 | MsG0180001760.01.T01:CDS |
| GGATTCTTCTCTTCCCAAAG+GGG | 0.641187 | 1:+26489271 | MsG0180001760.01.T01:CDS |
| ATAACTTATCAACATTCAAG+CGG | 0.641647 | 1:-26489096 | None:intergenic |
| GGAAAGGCTAAAGGTCAAGT+CGG | 0.643411 | 1:+26490211 | MsG0180001760.01.T01:CDS |
| TTAATCACTTTGCAAGACGG+AGG | 0.658006 | 1:-26489450 | None:intergenic |
| AGATATTTGAGAAGTTCACA+TGG | 0.666468 | 1:+26489056 | MsG0180001760.01.T01:CDS |
| AGTGCAAGTGCGGATGACTG+GGG | 0.692575 | 1:+26489660 | MsG0180001760.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAATATGATATTACT+TGG | + | Chr1:26490084-26490103 | MsG0180001760.01.T01:CDS | 10.0% |
| !!! | CAATTCTTATTTAATAGAAA+AGG | - | Chr1:26488971-26488990 | None:intergenic | 15.0% |
| !! | CAAATTTAGCTATAAATCTA+TGG | - | Chr1:26490338-26490357 | None:intergenic | 20.0% |
| !! | CATAGATTTATAGCTAAATT+TGG | + | Chr1:26490336-26490355 | MsG0180001760.01.T01:exon | 20.0% |
| !! | GTAAAAGAGTTTCAATATTT+GGG | - | Chr1:26489902-26489921 | None:intergenic | 20.0% |
| !! | TGTAAAAGAGTTTCAATATT+TGG | - | Chr1:26489903-26489922 | None:intergenic | 20.0% |
| !!! | ATTTGTGTTTTGATCTTATT+TGG | + | Chr1:26489235-26489254 | MsG0180001760.01.T01:intron | 20.0% |
| !!! | GAAAATAAGGTATCATATTT+TGG | - | Chr1:26490425-26490444 | None:intergenic | 20.0% |
| ! | AGTAGATTTAGATTCTGAAT+TGG | + | Chr1:26490295-26490314 | MsG0180001760.01.T01:CDS | 25.0% |
| ! | ATAACTTATCAACATTCAAG+CGG | - | Chr1:26489099-26489118 | None:intergenic | 25.0% |
| ! | GTAGATTTAGATTCTGAATT+GGG | + | Chr1:26490296-26490315 | MsG0180001760.01.T01:CDS | 25.0% |
| ! | TAACTTCTGCAAAATTATAG+TGG | - | Chr1:26489522-26489541 | None:intergenic | 25.0% |
| ! | TTCATTCAAATAACTTACCA+TGG | - | Chr1:26489151-26489170 | None:intergenic | 25.0% |
| ! | TTTAGGGATAAAAAGATATG+TGG | + | Chr1:26490130-26490149 | MsG0180001760.01.T01:CDS | 25.0% |
| !!! | ATCTTATTTGGTTTTGTTGT+AGG | + | Chr1:26489247-26489266 | MsG0180001760.01.T01:intron | 25.0% |
| !!! | TAAGGATCTTCAAGTTTTAT+GGG | + | Chr1:26490049-26490068 | MsG0180001760.01.T01:CDS | 25.0% |
| AAGGACTTAAAACACATTAC+AGG | - | Chr1:26490450-26490469 | None:intergenic | 30.0% | |
| AGATATTTGAGAAGTTCACA+TGG | + | Chr1:26489056-26489075 | MsG0180001760.01.T01:CDS | 30.0% | |
| AGTTTGACTACCAAATGTAA+GGG | - | Chr1:26489832-26489851 | None:intergenic | 30.0% | |
| CCAGTTACATATATATTTGG+AGG | + | Chr1:26489311-26489330 | MsG0180001760.01.T01:CDS | 30.0% | |
| CCTCCAAATATATATGTAAC+TGG | - | Chr1:26489314-26489333 | None:intergenic | 30.0% | |
| CGACCAGTTACATATATATT+TGG | + | Chr1:26489308-26489327 | MsG0180001760.01.T01:CDS | 30.0% | |
| GTGAATGATACTTGTATTGT+TGG | + | Chr1:26489738-26489757 | MsG0180001760.01.T01:CDS | 30.0% | |
| TAAAACTTGAAGATCCTTAC+AGG | - | Chr1:26490048-26490067 | None:intergenic | 30.0% | |
| TAACTTATCAACATTCAAGC+GGG | - | Chr1:26489098-26489117 | None:intergenic | 30.0% | |
| TGCATGTTCATTATGCTTTA+GGG | + | Chr1:26490114-26490133 | MsG0180001760.01.T01:CDS | 30.0% | |
| TTAATCTATATATCCACCAG+TGG | - | Chr1:26489183-26489202 | None:intergenic | 30.0% | |
| TTGCATGTTCATTATGCTTT+AGG | + | Chr1:26490113-26490132 | MsG0180001760.01.T01:CDS | 30.0% | |
| ! | GTGTATGTTTGATTTCATTG+TGG | + | Chr1:26489473-26489492 | MsG0180001760.01.T01:CDS | 30.0% |
| !! | AGAGACTTGTTGAAATCAAA+AGG | + | Chr1:26490263-26490282 | MsG0180001760.01.T01:CDS | 30.0% |
| !! | GTAAGGATCTTCAAGTTTTA+TGG | + | Chr1:26490048-26490067 | MsG0180001760.01.T01:CDS | 30.0% |
| !!! | TTATTTGGTTTTGTTGTAGG+AGG | + | Chr1:26489250-26489269 | MsG0180001760.01.T01:intron | 30.0% |
| AAGACTGCTAATATGTCTGA+GGG | + | Chr1:26489339-26489358 | MsG0180001760.01.T01:CDS | 35.0% | |
| AAGATATGTGGAGAAAGCTT+TGG | + | Chr1:26490142-26490161 | MsG0180001760.01.T01:CDS | 35.0% | |
| CACATTACAGGTGGAAAATA+AGG | - | Chr1:26490438-26490457 | None:intergenic | 35.0% | |
| CACTTAATCACTTTGCAAGA+CGG | - | Chr1:26489456-26489475 | None:intergenic | 35.0% | |
| CAGTTTGACTACCAAATGTA+AGG | - | Chr1:26489833-26489852 | None:intergenic | 35.0% | |
| GAATGAATCACAATTTCCAC+TGG | + | Chr1:26489164-26489183 | MsG0180001760.01.T01:intron | 35.0% | |
| GACTTAAAACACATTACAGG+TGG | - | Chr1:26490447-26490466 | None:intergenic | 35.0% | |
| TACCAAATGTAAGGGATGAA+GGG | - | Chr1:26489824-26489843 | None:intergenic | 35.0% | |
| TAGATTCTGAATTGGGATGT+GGG | + | Chr1:26490303-26490322 | MsG0180001760.01.T01:CDS | 35.0% | |
| TCTTCTCGAGTTTACAGAAA+TGG | + | Chr1:26489012-26489031 | MsG0180001760.01.T01:exon | 35.0% | |
| TGATACTTGTATTGTTGGTG+TGG | + | Chr1:26489743-26489762 | MsG0180001760.01.T01:CDS | 35.0% | |
| TTAGATTCTGAATTGGGATG+TGG | + | Chr1:26490302-26490321 | MsG0180001760.01.T01:CDS | 35.0% | |
| ! | CTTACATTTGGTAGTCAAAC+TGG | + | Chr1:26489831-26489850 | MsG0180001760.01.T01:CDS | 35.0% |
| !! | TTCTTCACTTGTTTCTACTG+AGG | + | Chr1:26489926-26489945 | MsG0180001760.01.T01:CDS | 35.0% |
| AGGATTCTTCTCTTCCCAAA+GGG | + | Chr1:26489270-26489289 | MsG0180001760.01.T01:CDS | 40.0% | |
| ATCCCTTCATCCCTTACATT+TGG | + | Chr1:26489819-26489838 | MsG0180001760.01.T01:CDS | 40.0% | |
| CTACCAAATGTAAGGGATGA+AGG | - | Chr1:26489825-26489844 | None:intergenic | 40.0% | |
| CTCGAGTTTACAGAAATGGA+GGG | + | Chr1:26489016-26489035 | MsG0180001760.01.T01:exon | 40.0% | |
| CTTACCATGGATATCCACTA+AGG | - | Chr1:26489138-26489157 | None:intergenic | 40.0% | |
| GAAGACTGCTAATATGTCTG+AGG | + | Chr1:26489338-26489357 | MsG0180001760.01.T01:CDS | 40.0% | |
| GACAACAGAACAATCACAGA+AGG | + | Chr1:26489411-26489430 | MsG0180001760.01.T01:CDS | 40.0% | |
| TCAAACTGGTCAAATGGAAG+TGG | + | Chr1:26489845-26489864 | MsG0180001760.01.T01:CDS | 40.0% | |
| TCTCGAGTTTACAGAAATGG+AGG | + | Chr1:26489015-26489034 | MsG0180001760.01.T01:exon | 40.0% | |
| TGAAAAGTTGAAGGAGAGCA+TGG | + | Chr1:26490169-26490188 | MsG0180001760.01.T01:CDS | 40.0% | |
| TGAATCACAATTTCCACTGG+TGG | + | Chr1:26489167-26489186 | MsG0180001760.01.T01:intron | 40.0% | |
| TGCTGTATTCAATCAAGTCG+AGG | + | Chr1:26489389-26489408 | MsG0180001760.01.T01:CDS | 40.0% | |
| TGGTAGTCAAACTGGTCAAA+TGG | + | Chr1:26489839-26489858 | MsG0180001760.01.T01:CDS | 40.0% | |
| TTAATCACTTTGCAAGACGG+AGG | - | Chr1:26489453-26489472 | None:intergenic | 40.0% | |
| TTTGGAGGCTGAAAAGTTGA+AGG | + | Chr1:26490160-26490179 | MsG0180001760.01.T01:CDS | 40.0% | |
| ! | ATATGTGGAGAAAGCTTTGG+AGG | + | Chr1:26490145-26490164 | MsG0180001760.01.T01:CDS | 40.0% |
| !! | GGATCTTCAAGTTTTATGGG+AGG | + | Chr1:26490052-26490071 | MsG0180001760.01.T01:CDS | 40.0% |
| !!! | CTCTGGCTTTTCTAGTCTTA+AGG | - | Chr1:26490010-26490029 | None:intergenic | 40.0% |
| CTGCTAATATGTCTGAGGGA+TGG | + | Chr1:26489343-26489362 | MsG0180001760.01.T01:CDS | 45.0% | |
| GAGGATTCTTCTCTTCCCAA+AGG | + | Chr1:26489269-26489288 | MsG0180001760.01.T01:CDS | 45.0% | |
| GCTCGAATTGGAAAGGCTAA+AGG | + | Chr1:26490202-26490221 | MsG0180001760.01.T01:CDS | 45.0% | |
| GGAAAGGCTAAAGGTCAAGT+CGG | + | Chr1:26490211-26490230 | MsG0180001760.01.T01:CDS | 45.0% | |
| GGATATCCACTAAGGACGAA+AGG | - | Chr1:26489130-26489149 | None:intergenic | 45.0% | |
| GGATTCTTCTCTTCCCAAAG+GGG | + | Chr1:26489271-26489290 | MsG0180001760.01.T01:CDS | 45.0% | |
| TAAAGATCCTGACGCAGAGT+CGG | + | Chr1:26489953-26489972 | MsG0180001760.01.T01:CDS | 45.0% | |
| TTCACAATAAACCCCCTTCC+AGG | - | Chr1:26489723-26489742 | None:intergenic | 45.0% | |
| ! | TCGTCCTTAGTGGATATCCA+TGG | + | Chr1:26489131-26489150 | MsG0180001760.01.T01:CDS | 45.0% |
| !! | TTCTGGAGCTCGAATTGGAA+AGG | + | Chr1:26490195-26490214 | MsG0180001760.01.T01:CDS | 45.0% |
| ACTGCACTACTCTTCCCCTT+TGG | - | Chr1:26489288-26489307 | None:intergenic | 50.0% | |
| ACTTTGCAAGACGGAGGAAG+AGG | - | Chr1:26489447-26489466 | None:intergenic | 50.0% | |
| ATATTTGGGCCTCGACCTTC+AGG | - | Chr1:26489888-26489907 | None:intergenic | 50.0% | |
| CATGAACGAGCAAGCCTGTA+AGG | + | Chr1:26490031-26490050 | MsG0180001760.01.T01:CDS | 50.0% | |
| CTCCTAACAGCAAAGCCTGA+AGG | + | Chr1:26489870-26489889 | MsG0180001760.01.T01:CDS | 50.0% | |
| CTGCACTACTCTTCCCCTTT+GGG | - | Chr1:26489287-26489306 | None:intergenic | 50.0% | |
| GAATTGGGATGTGGGAGTTG+TGG | + | Chr1:26490311-26490330 | MsG0180001760.01.T01:CDS | 50.0% | |
| GTGGCTACGCAAGAGTCATA+TGG | + | Chr1:26489492-26489511 | MsG0180001760.01.T01:CDS | 50.0% | |
| TCCACTAAGGACGAAAGGCT+CGG | - | Chr1:26489125-26489144 | None:intergenic | 50.0% | |
| TGAGCTTCGTGATCCTGGAA+GGG | + | Chr1:26489707-26489726 | MsG0180001760.01.T01:CDS | 50.0% | |
| TTAGCTGAGCTTCGTGATCC+TGG | + | Chr1:26489702-26489721 | MsG0180001760.01.T01:CDS | 50.0% | |
| ! | GAAGGAGAGCATGGTAGTTC+TGG | + | Chr1:26490178-26490197 | MsG0180001760.01.T01:CDS | 50.0% |
| ! | GAGTCGGTGTTTGCTGCATT+AGG | + | Chr1:26489969-26489988 | MsG0180001760.01.T01:CDS | 50.0% |
| !! | CTGAACTCGTGGCTAGTTTC+TGG | - | Chr1:26489642-26489661 | None:intergenic | 50.0% |
| !! | GACCTTCAGGCTTTGCTGTT+AGG | - | Chr1:26489875-26489894 | None:intergenic | 50.0% |
| !! | GGTAGTTCTGGAGCTCGAAT+TGG | + | Chr1:26490190-26490209 | MsG0180001760.01.T01:CDS | 50.0% |
| ACAGCAAAGCCTGAAGGTCG+AGG | + | Chr1:26489876-26489895 | MsG0180001760.01.T01:CDS | 55.0% | |
| AGCTTCGTGATCCTGGAAGG+GGG | + | Chr1:26489709-26489728 | MsG0180001760.01.T01:CDS | 55.0% | |
| AGTGCAAGTGCGGATGACTG+GGG | + | Chr1:26489660-26489679 | MsG0180001760.01.T01:CDS | 55.0% | |
| CAGTGCAAGTGCGGATGACT+GGG | + | Chr1:26489659-26489678 | MsG0180001760.01.T01:CDS | 55.0% | |
| CCACGAGTTCAGTGCAAGTG+CGG | + | Chr1:26489650-26489669 | MsG0180001760.01.T01:CDS | 55.0% | |
| CTGAGCTTCGTGATCCTGGA+AGG | + | Chr1:26489706-26489725 | MsG0180001760.01.T01:CDS | 55.0% | |
| GAGCTTCGTGATCCTGGAAG+GGG | + | Chr1:26489708-26489727 | MsG0180001760.01.T01:CDS | 55.0% | |
| TCAGTGCAAGTGCGGATGAC+TGG | + | Chr1:26489658-26489677 | MsG0180001760.01.T01:CDS | 55.0% | |
| TCCGAGCCTTTCGTCCTTAG+TGG | + | Chr1:26489121-26489140 | MsG0180001760.01.T01:CDS | 55.0% | |
| ! | GGCTTGCTCGTTCATGTCTC+TGG | - | Chr1:26490027-26490046 | None:intergenic | 55.0% |
| CCGCACTTGCACTGAACTCG+TGG | - | Chr1:26489653-26489672 | None:intergenic | 60.0% | |
| !! | GCAAACACCGACTCTGCGTC+AGG | - | Chr1:26489963-26489982 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 26488944 | 26490485 | 26488944 | ID=MsG0180001760.01;Name=MsG0180001760.01 |
| Chr1 | mRNA | 26488944 | 26490485 | 26488944 | ID=MsG0180001760.01.T01;Parent=MsG0180001760.01;Name=MsG0180001760.01.T01;_AED=0.43;_eAED=0.44;_QI=87|0.5|0.66|1|1|1|3|145|354 |
| Chr1 | exon | 26488944 | 26489152 | 26488944 | ID=MsG0180001760.01.T01:exon:18553;Parent=MsG0180001760.01.T01 |
| Chr1 | exon | 26489269 | 26489513 | 26489269 | ID=MsG0180001760.01.T01:exon:18554;Parent=MsG0180001760.01.T01 |
| Chr1 | exon | 26489643 | 26490485 | 26489643 | ID=MsG0180001760.01.T01:exon:18555;Parent=MsG0180001760.01.T01 |
| Chr1 | five_prime_UTR | 26488944 | 26489030 | 26488944 | ID=MsG0180001760.01.T01:five_prime_utr;Parent=MsG0180001760.01.T01 |
| Chr1 | CDS | 26489031 | 26489152 | 26489031 | ID=MsG0180001760.01.T01:cds;Parent=MsG0180001760.01.T01 |
| Chr1 | CDS | 26489269 | 26489513 | 26489269 | ID=MsG0180001760.01.T01:cds;Parent=MsG0180001760.01.T01 |
| Chr1 | CDS | 26489643 | 26490340 | 26489643 | ID=MsG0180001760.01.T01:cds;Parent=MsG0180001760.01.T01 |
| Chr1 | three_prime_UTR | 26490341 | 26490485 | 26490341 | ID=MsG0180001760.01.T01:three_prime_utr;Parent=MsG0180001760.01.T01 |
| Gene Sequence |
| Protein sequence |
