Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041237.01.T01 | XP_013450291.1 | 94.167 | 360 | 21 | 0 | 4 | 363 | 19 | 378 | 0 | 711 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041237.01.T01 | Q84WU2 | 46.281 | 121 | 62 | 2 | 6 | 126 | 63 | 180 | 4.06E-26 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041237.01.T01 | A0A072U3M4 | 94.167 | 360 | 21 | 0 | 4 | 363 | 19 | 378 | 0.0 | 711 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041237.01.T01 | MTR_7g107200 | 94.167 | 360 | 21 | 0 | 4 | 363 | 19 | 378 | 0.0 | 711 |
| MsG0780041237.01.T01 | MTR_1g042160 | 40.169 | 356 | 147 | 4 | 4 | 359 | 19 | 308 | 1.03e-84 | 259 |
| MsG0780041237.01.T01 | MTR_8g011730 | 35.938 | 384 | 171 | 10 | 4 | 361 | 20 | 354 | 6.87e-65 | 210 |
| MsG0780041237.01.T01 | MTR_7g107170 | 47.414 | 232 | 101 | 4 | 130 | 361 | 55 | 265 | 3.43e-57 | 187 |
| MsG0780041237.01.T01 | MTR_7g107170 | 61.628 | 86 | 33 | 0 | 264 | 349 | 1 | 86 | 2.48e-24 | 100 |
| MsG0780041237.01.T01 | MTR_7g107160 | 53.247 | 154 | 58 | 5 | 218 | 363 | 300 | 447 | 3.14e-39 | 145 |
| MsG0780041237.01.T01 | MTR_7g107160 | 40.650 | 123 | 63 | 2 | 57 | 179 | 3 | 115 | 1.87e-21 | 95.5 |
| MsG0780041237.01.T01 | MTR_7g107160 | 36.090 | 133 | 76 | 2 | 15 | 138 | 145 | 277 | 5.30e-21 | 94.4 |
| MsG0780041237.01.T01 | MTR_2g034780 | 41.667 | 144 | 80 | 2 | 198 | 341 | 109 | 248 | 6.04e-33 | 124 |
| MsG0780041237.01.T01 | MTR_3g079840 | 43.089 | 123 | 67 | 2 | 4 | 126 | 62 | 181 | 3.51e-26 | 110 |
| MsG0780041237.01.T01 | MTR_3g079840 | 43.089 | 123 | 67 | 2 | 4 | 126 | 63 | 182 | 3.58e-26 | 110 |
| MsG0780041237.01.T01 | MTR_5g086700 | 43.089 | 123 | 67 | 2 | 4 | 126 | 67 | 186 | 5.20e-26 | 110 |
| MsG0780041237.01.T01 | MTR_5g086700 | 43.089 | 123 | 67 | 2 | 4 | 126 | 67 | 186 | 5.25e-26 | 110 |
| MsG0780041237.01.T01 | MTR_1g041240 | 38.065 | 155 | 84 | 3 | 4 | 150 | 64 | 214 | 6.62e-26 | 109 |
| MsG0780041237.01.T01 | MTR_1g041240 | 38.065 | 155 | 84 | 3 | 4 | 150 | 65 | 215 | 6.62e-26 | 109 |
| MsG0780041237.01.T01 | MTR_1g041240 | 38.065 | 155 | 84 | 3 | 4 | 150 | 63 | 213 | 6.80e-26 | 109 |
| MsG0780041237.01.T01 | MTR_5g091450 | 41.176 | 119 | 68 | 2 | 6 | 124 | 41 | 157 | 4.20e-24 | 104 |
| MsG0780041237.01.T01 | MTR_5g091550 | 34.507 | 142 | 86 | 3 | 4 | 145 | 25 | 159 | 6.88e-16 | 79.0 |
| MsG0780041237.01.T01 | MTR_5g091550 | 32.653 | 147 | 92 | 3 | 4 | 150 | 25 | 164 | 7.29e-16 | 79.0 |
| MsG0780041237.01.T01 | MTR_5g091180 | 34.234 | 111 | 72 | 1 | 14 | 124 | 61 | 170 | 3.61e-15 | 77.4 |
| MsG0780041237.01.T01 | MTR_8g006190 | 32.308 | 130 | 83 | 3 | 10 | 134 | 3 | 132 | 2.06e-12 | 68.6 |
| MsG0780041237.01.T01 | MTR_4g123750 | 30.714 | 140 | 86 | 4 | 1 | 131 | 22 | 159 | 3.01e-12 | 67.0 |
| MsG0780041237.01.T01 | MTR_3g106700 | 31.250 | 112 | 77 | 0 | 15 | 126 | 431 | 542 | 4.02e-12 | 68.2 |
| MsG0780041237.01.T01 | MTR_2g096285 | 78.788 | 33 | 7 | 0 | 200 | 232 | 44 | 76 | 2.32e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041237.01.T01 | AT3G11910 | 46.281 | 121 | 62 | 2 | 6 | 126 | 63 | 180 | 4.13e-27 | 113 |
| MsG0780041237.01.T01 | AT3G11910 | 46.281 | 121 | 62 | 2 | 6 | 126 | 63 | 180 | 4.13e-27 | 113 |
| MsG0780041237.01.T01 | AT3G11910 | 46.281 | 121 | 62 | 2 | 6 | 126 | 62 | 179 | 4.33e-27 | 113 |
| MsG0780041237.01.T01 | AT3G11910 | 46.281 | 121 | 62 | 2 | 6 | 126 | 62 | 179 | 4.33e-27 | 113 |
| MsG0780041237.01.T01 | AT5G06600 | 44.628 | 121 | 64 | 2 | 6 | 126 | 64 | 181 | 3.20e-26 | 110 |
| MsG0780041237.01.T01 | AT5G06600 | 44.628 | 121 | 64 | 2 | 6 | 126 | 64 | 181 | 3.32e-26 | 110 |
| MsG0780041237.01.T01 | AT5G06600 | 44.628 | 121 | 64 | 2 | 6 | 126 | 63 | 180 | 3.47e-26 | 110 |
| MsG0780041237.01.T01 | AT3G58250 | 36.842 | 114 | 72 | 0 | 13 | 126 | 24 | 137 | 3.60e-20 | 90.5 |
| MsG0780041237.01.T01 | AT3G58270 | 35.398 | 113 | 71 | 1 | 14 | 126 | 23 | 133 | 2.52e-14 | 73.6 |
| MsG0780041237.01.T01 | AT3G58270 | 35.398 | 113 | 71 | 1 | 14 | 126 | 23 | 133 | 2.52e-14 | 73.6 |
| MsG0780041237.01.T01 | AT3G58270 | 35.398 | 113 | 71 | 1 | 14 | 126 | 23 | 133 | 2.52e-14 | 73.6 |
| MsG0780041237.01.T01 | AT3G58210 | 32.143 | 112 | 76 | 0 | 15 | 126 | 24 | 135 | 5.75e-14 | 72.4 |
| MsG0780041237.01.T01 | AT3G58410 | 32.812 | 128 | 75 | 3 | 3 | 124 | 6 | 128 | 7.43e-14 | 72.0 |
| MsG0780041237.01.T01 | AT3G58370 | 34.211 | 114 | 72 | 2 | 13 | 124 | 23 | 135 | 8.90e-13 | 68.6 |
| MsG0780041237.01.T01 | AT3G58340 | 30.894 | 123 | 82 | 2 | 2 | 124 | 12 | 131 | 1.78e-12 | 67.8 |
| MsG0780041237.01.T01 | AT3G58340 | 30.894 | 123 | 82 | 2 | 2 | 124 | 12 | 131 | 1.98e-12 | 67.8 |
| MsG0780041237.01.T01 | AT3G58360 | 26.923 | 208 | 140 | 5 | 4 | 202 | 14 | 218 | 2.44e-12 | 67.4 |
| MsG0780041237.01.T01 | AT3G17380 | 30.709 | 127 | 84 | 2 | 4 | 126 | 27 | 153 | 2.91e-12 | 67.4 |
| MsG0780041237.01.T01 | AT2G05420 | 31.783 | 129 | 80 | 3 | 4 | 126 | 15 | 141 | 3.86e-12 | 66.6 |
Find 92 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAACATGTCAATTTATT+TGG | 0.127834 | 7:-88612896 | MsG0780041237.01.T01:CDS |
| TGGGAGGAACTTGAGATATT+TGG | 0.152055 | 7:-88611678 | MsG0780041237.01.T01:CDS |
| CTTATGGATTTCATGGGTTT+GGG | 0.212202 | 7:-88611897 | MsG0780041237.01.T01:CDS |
| TTGAATGTTGAACTAGGATA+TGG | 0.234183 | 7:-88611444 | MsG0780041237.01.T01:CDS |
| ATACTCAATTGGTGAGCTTA+TGG | 0.239009 | 7:-88611913 | MsG0780041237.01.T01:CDS |
| GCAATCTCCCAATTCTTATC+AGG | 0.246927 | 7:-88612866 | MsG0780041237.01.T01:CDS |
| GCTTATGGATTTCATGGGTT+TGG | 0.253211 | 7:-88611898 | MsG0780041237.01.T01:CDS |
| GAATCGAACCGGCAACTTAA+TGG | 0.259563 | 7:-88612099 | MsG0780041237.01.T01:CDS |
| TCGGAAAGAGATTCCAGATT+TGG | 0.279805 | 7:+88611993 | None:intergenic |
| TGAATGGGCTTTCACCGCTT+TGG | 0.308949 | 7:-88611778 | MsG0780041237.01.T01:CDS |
| CTTTCGCCTTTCTAGTCTTA+AGG | 0.313960 | 7:+88611739 | None:intergenic |
| AGGATTCTTGTTTACCCATA+TGG | 0.340511 | 7:-88612934 | MsG0780041237.01.T01:CDS |
| GAATGGGCTTTCACCGCTTT+GGG | 0.344202 | 7:-88611777 | MsG0780041237.01.T01:CDS |
| TGGTGAGCTTATGGATTTCA+TGG | 0.358484 | 7:-88611904 | MsG0780041237.01.T01:CDS |
| GGACTAGAGATGTGACATTT+AGG | 0.362008 | 7:-88612840 | MsG0780041237.01.T01:CDS |
| GTATCGTTCCCGTTCCCATA+TGG | 0.372671 | 7:+88612919 | None:intergenic |
| AGTCCCGCCCTGATAAGAAT+TGG | 0.374270 | 7:+88612858 | None:intergenic |
| GGAGAGGCTCAAGACAAAAT+TGG | 0.376325 | 7:-88611535 | MsG0780041237.01.T01:CDS |
| TAGTGAAGCCATTAAGTTGC+CGG | 0.387507 | 7:+88612091 | None:intergenic |
| ACGAACTAATATAGGAAATT+CGG | 0.387641 | 7:+88611974 | None:intergenic |
| GCACTTGGACTTCAGACCTT+GGG | 0.395100 | 7:+88612015 | None:intergenic |
| TGAAGTCCAAGTGCCAAATC+TGG | 0.396917 | 7:-88612006 | MsG0780041237.01.T01:CDS |
| TGAGATATTTGGATTTGATC+TGG | 0.403485 | 7:-88611667 | MsG0780041237.01.T01:CDS |
| TCATATTAGTGGAGGACATA+TGG | 0.408522 | 7:-88612042 | MsG0780041237.01.T01:CDS |
| TTGTTTACCCATATGGGAAC+GGG | 0.418270 | 7:-88612927 | MsG0780041237.01.T01:CDS |
| TCCGAGCCTTTCGTCCTTTG+CGG | 0.419001 | 7:-88613068 | MsG0780041237.01.T01:CDS |
| AATATGACTACCATATGTTA+TGG | 0.423997 | 7:+88612058 | None:intergenic |
| GTGAACGATAGTTGTATTGT+TGG | 0.429733 | 7:-88612164 | MsG0780041237.01.T01:CDS |
| TTGATGGAAGAAGGCTTCAA+TGG | 0.434142 | 7:-88611474 | MsG0780041237.01.T01:CDS |
| GGATTCTTGTTTACCCATAT+GGG | 0.441141 | 7:-88612933 | MsG0780041237.01.T01:CDS |
| CATAGCAAGAGACTTGTTGA+TGG | 0.442516 | 7:-88611490 | MsG0780041237.01.T01:CDS |
| TCCATGTCAGTGTCTCTTGT+AGG | 0.444931 | 7:+88611945 | None:intergenic |
| GGCTCAGTACGAACTAATAT+AGG | 0.448602 | 7:+88611966 | None:intergenic |
| TCGTCCTTTGCGGCTATCCA+TGG | 0.452653 | 7:-88613058 | MsG0780041237.01.T01:intron |
| TGAGCTTCATAATCATTGCC+TGG | 0.455761 | 7:-88612195 | MsG0780041237.01.T01:CDS |
| GAGATTCCAGATTTGGCACT+TGG | 0.456893 | 7:+88612000 | None:intergenic |
| AAGTCGCAGGTTTACTGAAT+GGG | 0.461356 | 7:-88611793 | MsG0780041237.01.T01:CDS |
| TTATTTCCTTAAGACTAGAA+AGG | 0.464823 | 7:-88611745 | MsG0780041237.01.T01:CDS |
| TATCGTTCCCGTTCCCATAT+GGG | 0.473405 | 7:+88612920 | None:intergenic |
| TATTTGGATTTGATCTGGCT+TGG | 0.474225 | 7:-88611662 | MsG0780041237.01.T01:CDS |
| TGAATGTTGAACTAGGATAT+GGG | 0.479501 | 7:-88611443 | MsG0780041237.01.T01:CDS |
| GAGAATGAAATGAATCGAAC+CGG | 0.483272 | 7:-88612110 | MsG0780041237.01.T01:CDS |
| AGAGACTTGTTGATGGAAGA+AGG | 0.484271 | 7:-88611483 | MsG0780041237.01.T01:CDS |
| TCAGTGAAAGGGAAAGAGAC+TGG | 0.486355 | 7:-88612244 | MsG0780041237.01.T01:CDS |
| TTATCTAACTCCATAACATA+TGG | 0.486858 | 7:-88612068 | MsG0780041237.01.T01:CDS |
| GTCCCGCCCTGATAAGAATT+GGG | 0.491338 | 7:+88612859 | None:intergenic |
| TTTCATGGGTTTGGGGCAAG+TGG | 0.492155 | 7:-88611889 | MsG0780041237.01.T01:CDS |
| CTCATCATGTGTTCAGTGAA+AGG | 0.492761 | 7:-88612256 | MsG0780041237.01.T01:CDS |
| CATGAATAAGCAAGCTTGCA+AGG | 0.496067 | 7:-88611715 | MsG0780041237.01.T01:CDS |
| TCATCATGTGTTCAGTGAAA+GGG | 0.497055 | 7:-88612255 | MsG0780041237.01.T01:CDS |
| GAAGTCGCAGGTTTACTGAA+TGG | 0.498173 | 7:-88611794 | MsG0780041237.01.T01:CDS |
| ATGTTCAATCTGCTTTAAGA+AGG | 0.499102 | 7:-88611629 | MsG0780041237.01.T01:CDS |
| CTCCCAATTCTTATCAGGGC+GGG | 0.499210 | 7:-88612861 | MsG0780041237.01.T01:CDS |
| GGCACTTGGACTTCAGACCT+TGG | 0.511796 | 7:+88612014 | None:intergenic |
| GAGCTTCATAATCATTGCCT+GGG | 0.514393 | 7:-88612194 | MsG0780041237.01.T01:CDS |
| GGAGTAAACCTTCTCGATGC+TGG | 0.515041 | 7:+88613088 | None:intergenic |
| ACATATGGTAGTCATATTAG+TGG | 0.518383 | 7:-88612053 | MsG0780041237.01.T01:CDS |
| GGAAGGTATAGCGTTGGAAA+TGG | 0.522456 | 7:-88611556 | MsG0780041237.01.T01:CDS |
| CAGTGAAAGGGAAAGAGACT+GGG | 0.524254 | 7:-88612243 | MsG0780041237.01.T01:CDS |
| TGATGGAAGAAGGCTTCAAT+GGG | 0.525936 | 7:-88611473 | MsG0780041237.01.T01:CDS |
| GGTGAGCTTATGGATTTCAT+GGG | 0.529533 | 7:-88611903 | MsG0780041237.01.T01:CDS |
| CTTGTTTACCCATATGGGAA+CGG | 0.538005 | 7:-88612928 | MsG0780041237.01.T01:CDS |
| CAATCTCCCAATTCTTATCA+GGG | 0.540479 | 7:-88612865 | MsG0780041237.01.T01:CDS |
| CGTGGAGAAAGCTGTGCAGA+TGG | 0.545872 | 7:-88611598 | MsG0780041237.01.T01:CDS |
| CTTAAAGCAGATTGAACATG+AGG | 0.546786 | 7:+88611633 | None:intergenic |
| AGAGATTTGAATGTTGAACT+AGG | 0.549500 | 7:-88611450 | MsG0780041237.01.T01:CDS |
| GTCAGCAGAGGAGAAGTCGC+AGG | 0.549739 | 7:-88611806 | MsG0780041237.01.T01:CDS |
| GAACATGCTTCCTCTAGTAG+TGG | 0.556414 | 7:+88611852 | None:intergenic |
| TGATTATGAAGCTCAACTAA+AGG | 0.561446 | 7:+88612203 | None:intergenic |
| AGCTTCATAATCATTGCCTG+GGG | 0.575530 | 7:-88612193 | MsG0780041237.01.T01:CDS |
| GTTTGAGAAATTCTCATGGA+AGG | 0.581746 | 7:-88613131 | None:intergenic |
| GAATGCGGAAGGTATAGCGT+TGG | 0.587299 | 7:-88611562 | MsG0780041237.01.T01:CDS |
| GCCGCAAAGGACGAAAGGCT+CGG | 0.589341 | 7:+88613067 | None:intergenic |
| GGATAGCCGCAAAGGACGAA+AGG | 0.590744 | 7:+88613062 | None:intergenic |
| TGCTGACACTCAATAAGTGA+AGG | 0.593249 | 7:+88611822 | None:intergenic |
| TTATGGATTTCATGGGTTTG+GGG | 0.602442 | 7:-88611896 | MsG0780041237.01.T01:CDS |
| CACTTATTGAGTGTCAGCAG+AGG | 0.606047 | 7:-88611818 | MsG0780041237.01.T01:CDS |
| TAGTTGTATTGTTGGTGCTG+AGG | 0.607043 | 7:-88612156 | MsG0780041237.01.T01:CDS |
| TCGAGTGACCAGCATCGAGA+AGG | 0.620117 | 7:-88613096 | MsG0780041237.01.T01:CDS |
| AATACCATGGATAGCCGCAA+AGG | 0.627201 | 7:+88613054 | None:intergenic |
| ATGCTGAAGGAGAATGCGGA+AGG | 0.629719 | 7:-88611573 | MsG0780041237.01.T01:CDS |
| GGAGATGCTGAAGGAGAATG+CGG | 0.647398 | 7:-88611577 | MsG0780041237.01.T01:CDS |
| TATCGTTCACAATAAACCCC+AGG | 0.658486 | 7:+88612177 | None:intergenic |
| GCCTACAAGAGACACTGACA+TGG | 0.667114 | 7:-88611946 | MsG0780041237.01.T01:CDS |
| GTATAGCGTTGGAAATGGAG+AGG | 0.668129 | 7:-88611551 | MsG0780041237.01.T01:CDS |
| TATGGTAGTCATATTAGTGG+AGG | 0.668965 | 7:-88612050 | MsG0780041237.01.T01:CDS |
| GAGGACATATGGAAGTCCCA+AGG | 0.678751 | 7:-88612031 | MsG0780041237.01.T01:CDS |
| TGTGCAGATGGAGATGCTGA+AGG | 0.682175 | 7:-88611586 | MsG0780041237.01.T01:CDS |
| AGTGAAAGGGAAAGAGACTG+GGG | 0.689762 | 7:-88612242 | MsG0780041237.01.T01:CDS |
| TCTCCCAATTCTTATCAGGG+CGG | 0.696162 | 7:-88612862 | MsG0780041237.01.T01:CDS |
| TTTAAGAAGGAAAAGTTACG+TGG | 0.719498 | 7:-88611616 | MsG0780041237.01.T01:CDS |
| ATAAAGAACTCTGCCCAAAG+CGG | 0.731605 | 7:+88611764 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAACTTAATCTTTTTTTTT+TGG | - | Chr7:88611946-88611965 | MsG0780041237.01.T01:CDS | 10.0% |
| !!! | ATTTTGGTATTTTTATTTTA+CGG | - | Chr7:88612115-88612134 | MsG0780041237.01.T01:CDS | 10.0% |
| !! | AAATAAAAATACCAAAATAG+AGG | + | Chr7:88612113-88612132 | None:intergenic | 15.0% |
| !! | AAATTGAGAAAATAAACATT+AGG | + | Chr7:88612085-88612104 | None:intergenic | 15.0% |
| !! | ATTTATTCATTTAAATACCA+TGG | + | Chr7:88611512-88611531 | None:intergenic | 15.0% |
| !!! | ATGTTTATTTTCTCAATTTT+TGG | - | Chr7:88612086-88612105 | MsG0780041237.01.T01:CDS | 15.0% |
| !!! | TTTTGGTATTTTTATTTTAC+GGG | - | Chr7:88612116-88612135 | MsG0780041237.01.T01:CDS | 15.0% |
| !! | AAACAACATGTCAATTTATT+TGG | - | Chr7:88611654-88611673 | MsG0780041237.01.T01:CDS | 20.0% |
| !! | AAATAAACATTAGGAGATTA+AGG | + | Chr7:88612076-88612095 | None:intergenic | 20.0% |
| !! | AATAAACATTAGGAGATTAA+GGG | + | Chr7:88612075-88612094 | None:intergenic | 20.0% |
| !! | ACCAAAGCAATTAATATAAA+TGG | + | Chr7:88611584-88611603 | None:intergenic | 20.0% |
| !! | ACCATTTATATTAATTGCTT+TGG | - | Chr7:88611580-88611599 | MsG0780041237.01.T01:CDS | 20.0% |
| !! | GTTAAGATAATGAGTTTAAA+TGG | - | Chr7:88611832-88611851 | MsG0780041237.01.T01:CDS | 20.0% |
| !! | TATGAAATGAAGAGTTAATT+TGG | + | Chr7:88612257-88612276 | None:intergenic | 20.0% |
| !!! | GAATTTTTCAAATACTCAAT+TGG | - | Chr7:88612626-88612645 | MsG0780041237.01.T01:intron | 20.0% |
| !!! | TATATTAATTGCTTTGGTTT+TGG | - | Chr7:88611586-88611605 | MsG0780041237.01.T01:CDS | 20.0% |
| ! | AATATGACTACCATATGTTA+TGG | + | Chr7:88612495-88612514 | None:intergenic | 25.0% |
| ! | ACGAACTAATATAGGAAATT+CGG | + | Chr7:88612579-88612598 | None:intergenic | 25.0% |
| ! | ATAAACATTAGGAGATTAAG+GGG | + | Chr7:88612074-88612093 | None:intergenic | 25.0% |
| ! | CTTTAATCAATGATATGTAG+TGG | - | Chr7:88611989-88612008 | MsG0780041237.01.T01:CDS | 25.0% |
| ! | TTATCTAACTCCATAACATA+TGG | - | Chr7:88612482-88612501 | MsG0780041237.01.T01:intron | 25.0% |
| ! | TTATTTCCTTAAGACTAGAA+AGG | - | Chr7:88612805-88612824 | MsG0780041237.01.T01:CDS | 25.0% |
| ! | TTCAATAAATTCTGACATGT+AGG | + | Chr7:88611536-88611555 | None:intergenic | 25.0% |
| !! | AAGTTATAAGACTGACTTAA+TGG | + | Chr7:88611933-88611952 | None:intergenic | 25.0% |
| !! | CAAGGATCTTCAAATTTTAT+GGG | - | Chr7:88612853-88612872 | MsG0780041237.01.T01:CDS | 25.0% |
| !!! | TTATTTTACGGGTTAAACAT+GGG | - | Chr7:88612127-88612146 | MsG0780041237.01.T01:CDS | 25.0% |
| !!! | TTTATTTTACGGGTTAAACA+TGG | - | Chr7:88612126-88612145 | MsG0780041237.01.T01:CDS | 25.0% |
| ACATATGGTAGTCATATTAG+TGG | - | Chr7:88612497-88612516 | MsG0780041237.01.T01:intron | 30.0% | |
| AGAGATTTGAATGTTGAACT+AGG | - | Chr7:88613100-88613119 | MsG0780041237.01.T01:CDS | 30.0% | |
| GATATGTAGTGGCAATATAA+TGG | - | Chr7:88612000-88612019 | MsG0780041237.01.T01:CDS | 30.0% | |
| GCAAGGGAATAAAATGAATT+AGG | + | Chr7:88611805-88611824 | None:intergenic | 30.0% | |
| GGAATAAAATGAATTAGGCA+AGG | + | Chr7:88611800-88611819 | None:intergenic | 30.0% | |
| TATCTTAACCTTGAAAGCAA+GGG | + | Chr7:88611821-88611840 | None:intergenic | 30.0% | |
| TGAATGTTGAACTAGGATAT+GGG | - | Chr7:88613107-88613126 | MsG0780041237.01.T01:CDS | 30.0% | |
| TGAGATATTTGGATTTGATC+TGG | - | Chr7:88612883-88612902 | MsG0780041237.01.T01:CDS | 30.0% | |
| TGATTATGAAGCTCAACTAA+AGG | + | Chr7:88612350-88612369 | None:intergenic | 30.0% | |
| TTATCTTAACCTTGAAAGCA+AGG | + | Chr7:88611822-88611841 | None:intergenic | 30.0% | |
| TTGAATGTTGAACTAGGATA+TGG | - | Chr7:88613106-88613125 | MsG0780041237.01.T01:CDS | 30.0% | |
| TTTAAGAAGGAAAAGTTACG+TGG | - | Chr7:88612934-88612953 | MsG0780041237.01.T01:CDS | 30.0% | |
| ! | ATATTTTGTTCCACTACTAG+AGG | - | Chr7:88612688-88612707 | MsG0780041237.01.T01:intron | 30.0% |
| ! | ATTTTATTCCCTTGCTTTCA+AGG | - | Chr7:88611810-88611829 | MsG0780041237.01.T01:CDS | 30.0% |
| ! | GCAAGGATCTTCAAATTTTA+TGG | - | Chr7:88612852-88612871 | MsG0780041237.01.T01:CDS | 30.0% |
| !! | ATGTTCAATCTGCTTTAAGA+AGG | - | Chr7:88612921-88612940 | MsG0780041237.01.T01:CDS | 30.0% |
| !! | GCAATATAATGGACTTTCAT+TGG | - | Chr7:88612011-88612030 | MsG0780041237.01.T01:CDS | 30.0% |
| !! | TATTTTACGGGTTAAACATG+GGG | - | Chr7:88612128-88612147 | MsG0780041237.01.T01:CDS | 30.0% |
| !!! | ATTGCTTTGGTTTTGGTTTT+AGG | - | Chr7:88611593-88611612 | MsG0780041237.01.T01:CDS | 30.0% |
| !!! | CAATTTTTGGTCCTCTATTT+TGG | - | Chr7:88612099-88612118 | MsG0780041237.01.T01:CDS | 30.0% |
| AATGAATTAGGCAAGGAAAG+AGG | + | Chr7:88611793-88611812 | None:intergenic | 35.0% | |
| ACAAAACCTCTGTATTACGT+TGG | + | Chr7:88612171-88612190 | None:intergenic | 35.0% | |
| ATACTCAATTGGTGAGCTTA+TGG | - | Chr7:88612637-88612656 | MsG0780041237.01.T01:intron | 35.0% | |
| CAATCTCCCAATTCTTATCA+GGG | - | Chr7:88611685-88611704 | MsG0780041237.01.T01:CDS | 35.0% | |
| CTTAAAGCAGATTGAACATG+AGG | + | Chr7:88612920-88612939 | None:intergenic | 35.0% | |
| CTTATGGATTTCATGGGTTT+GGG | - | Chr7:88612653-88612672 | MsG0780041237.01.T01:intron | 35.0% | |
| GAGAATGAAATGAATCGAAC+CGG | - | Chr7:88612440-88612459 | MsG0780041237.01.T01:intron | 35.0% | |
| GTGAACGATAGTTGTATTGT+TGG | - | Chr7:88612386-88612405 | MsG0780041237.01.T01:intron | 35.0% | |
| TATGGTAGTCATATTAGTGG+AGG | - | Chr7:88612500-88612519 | MsG0780041237.01.T01:intron | 35.0% | |
| TATTTGGATTTGATCTGGCT+TGG | - | Chr7:88612888-88612907 | MsG0780041237.01.T01:CDS | 35.0% | |
| TCATATTAGTGGAGGACATA+TGG | - | Chr7:88612508-88612527 | MsG0780041237.01.T01:intron | 35.0% | |
| TCATCATGTGTTCAGTGAAA+GGG | - | Chr7:88612295-88612314 | MsG0780041237.01.T01:intron | 35.0% | |
| TTATGGATTTCATGGGTTTG+GGG | - | Chr7:88612654-88612673 | MsG0780041237.01.T01:intron | 35.0% | |
| ! | AGGATTCTTGTTTACCCATA+TGG | - | Chr7:88611616-88611635 | MsG0780041237.01.T01:CDS | 35.0% |
| ! | GGATCTTCAAATTTTATGGG+AGG | - | Chr7:88612856-88612875 | MsG0780041237.01.T01:CDS | 35.0% |
| ! | GGATTCTTGTTTACCCATAT+GGG | - | Chr7:88611617-88611636 | MsG0780041237.01.T01:CDS | 35.0% |
| !!! | CGTACGTTTTTTGATTGACA+TGG | + | Chr7:88611764-88611783 | None:intergenic | 35.0% |
| AAACCTCTGTATTACGTTGG+AGG | + | Chr7:88612168-88612187 | None:intergenic | 40.0% | |
| AAGTCGCAGGTTTACTGAAT+GGG | - | Chr7:88612757-88612776 | MsG0780041237.01.T01:intron | 40.0% | |
| AGCTTCATAATCATTGCCTG+GGG | - | Chr7:88612357-88612376 | MsG0780041237.01.T01:intron | 40.0% | |
| ATAAAGAACTCTGCCCAAAG+CGG | + | Chr7:88612789-88612808 | None:intergenic | 40.0% | |
| CATGAATAAGCAAGCTTGCA+AGG | - | Chr7:88612835-88612854 | MsG0780041237.01.T01:CDS | 40.0% | |
| CTCATCATGTGTTCAGTGAA+AGG | - | Chr7:88612294-88612313 | MsG0780041237.01.T01:intron | 40.0% | |
| CTTGTTTACCCATATGGGAA+CGG | - | Chr7:88611622-88611641 | MsG0780041237.01.T01:CDS | 40.0% | |
| GAGCTTCATAATCATTGCCT+GGG | - | Chr7:88612356-88612375 | MsG0780041237.01.T01:intron | 40.0% | |
| GCAATCTCCCAATTCTTATC+AGG | - | Chr7:88611684-88611703 | MsG0780041237.01.T01:CDS | 40.0% | |
| GCTTATGGATTTCATGGGTT+TGG | - | Chr7:88612652-88612671 | MsG0780041237.01.T01:intron | 40.0% | |
| GGACTAGAGATGTGACATTT+AGG | - | Chr7:88611710-88611729 | MsG0780041237.01.T01:CDS | 40.0% | |
| GGCTCAGTACGAACTAATAT+AGG | + | Chr7:88612587-88612606 | None:intergenic | 40.0% | |
| GGTGAGCTTATGGATTTCAT+GGG | - | Chr7:88612647-88612666 | MsG0780041237.01.T01:intron | 40.0% | |
| TATCGTTCACAATAAACCCC+AGG | + | Chr7:88612376-88612395 | None:intergenic | 40.0% | |
| TCGGAAAGAGATTCCAGATT+TGG | + | Chr7:88612560-88612579 | None:intergenic | 40.0% | |
| TGAGCTTCATAATCATTGCC+TGG | - | Chr7:88612355-88612374 | MsG0780041237.01.T01:intron | 40.0% | |
| TGATGGAAGAAGGCTTCAAT+GGG | - | Chr7:88613077-88613096 | MsG0780041237.01.T01:CDS | 40.0% | |
| TGCTGACACTCAATAAGTGA+AGG | + | Chr7:88612731-88612750 | None:intergenic | 40.0% | |
| TGGGAGGAACTTGAGATATT+TGG | - | Chr7:88612872-88612891 | MsG0780041237.01.T01:CDS | 40.0% | |
| TGGTGAGCTTATGGATTTCA+TGG | - | Chr7:88612646-88612665 | MsG0780041237.01.T01:intron | 40.0% | |
| TTGATGGAAGAAGGCTTCAA+TGG | - | Chr7:88613076-88613095 | MsG0780041237.01.T01:CDS | 40.0% | |
| TTGTTTACCCATATGGGAAC+GGG | - | Chr7:88611623-88611642 | MsG0780041237.01.T01:CDS | 40.0% | |
| TTTCCTCCAACGTAATACAG+AGG | - | Chr7:88612162-88612181 | MsG0780041237.01.T01:CDS | 40.0% | |
| ! | TAGTGAAGCCATTAAGTTGC+CGG | + | Chr7:88612462-88612481 | None:intergenic | 40.0% |
| !! | AGAGACTTGTTGATGGAAGA+AGG | - | Chr7:88613067-88613086 | MsG0780041237.01.T01:CDS | 40.0% |
| !! | CATAGCAAGAGACTTGTTGA+TGG | - | Chr7:88613060-88613079 | MsG0780041237.01.T01:CDS | 40.0% |
| !! | CTTTCGCCTTTCTAGTCTTA+AGG | + | Chr7:88612814-88612833 | None:intergenic | 40.0% |
| !! | TAGTTGTATTGTTGGTGCTG+AGG | - | Chr7:88612394-88612413 | MsG0780041237.01.T01:intron | 40.0% |
| !!! | GCTTTGGTTTTGGTTTTAGG+AGG | - | Chr7:88611596-88611615 | MsG0780041237.01.T01:CDS | 40.0% |
| AATACCATGGATAGCCGCAA+AGG | + | Chr7:88611499-88611518 | None:intergenic | 45.0% | |
| AGTGAAAGGGAAAGAGACTG+GGG | - | Chr7:88612308-88612327 | MsG0780041237.01.T01:intron | 45.0% | |
| CACTTATTGAGTGTCAGCAG+AGG | - | Chr7:88612732-88612751 | MsG0780041237.01.T01:intron | 45.0% | |
| CAGTGAAAGGGAAAGAGACT+GGG | - | Chr7:88612307-88612326 | MsG0780041237.01.T01:intron | 45.0% | |
| GAACATGCTTCCTCTAGTAG+TGG | + | Chr7:88612701-88612720 | None:intergenic | 45.0% | |
| GAAGTCGCAGGTTTACTGAA+TGG | - | Chr7:88612756-88612775 | MsG0780041237.01.T01:intron | 45.0% | |
| GAATCGAACCGGCAACTTAA+TGG | - | Chr7:88612451-88612470 | MsG0780041237.01.T01:intron | 45.0% | |
| GAATTAGGCAAGGAAAGAGG+AGG | + | Chr7:88611790-88611809 | None:intergenic | 45.0% | |
| GAGATTCCAGATTTGGCACT+TGG | + | Chr7:88612553-88612572 | None:intergenic | 45.0% | |
| GGAGAGGCTCAAGACAAAAT+TGG | - | Chr7:88613015-88613034 | MsG0780041237.01.T01:intron | 45.0% | |
| TATCGTTCCCGTTCCCATAT+GGG | + | Chr7:88611633-88611652 | None:intergenic | 45.0% | |
| TCAGTGAAAGGGAAAGAGAC+TGG | - | Chr7:88612306-88612325 | MsG0780041237.01.T01:intron | 45.0% | |
| TCCATGTCAGTGTCTCTTGT+AGG | + | Chr7:88612608-88612627 | None:intergenic | 45.0% | |
| TCTCCCAATTCTTATCAGGG+CGG | - | Chr7:88611688-88611707 | MsG0780041237.01.T01:CDS | 45.0% | |
| TGAAGTCCAAGTGCCAAATC+TGG | - | Chr7:88612544-88612563 | MsG0780041237.01.T01:intron | 45.0% | |
| ! | GGAAGGTATAGCGTTGGAAA+TGG | - | Chr7:88612994-88613013 | MsG0780041237.01.T01:intron | 45.0% |
| ! | GTATAGCGTTGGAAATGGAG+AGG | - | Chr7:88612999-88613018 | MsG0780041237.01.T01:intron | 45.0% |
| ! | TTTACGGGTTAAACATGGGG+TGG | - | Chr7:88612131-88612150 | MsG0780041237.01.T01:CDS | 45.0% |
| !!! | ATCTTTTTTTTTTTTTTTTT+TGG | - | Chr7:88611873-88611892 | MsG0780041237.01.T01:CDS | 5.0% |
| AGTCCCGCCCTGATAAGAAT+TGG | + | Chr7:88611695-88611714 | None:intergenic | 50.0% | |
| ATGCTGAAGGAGAATGCGGA+AGG | - | Chr7:88612977-88612996 | MsG0780041237.01.T01:intron | 50.0% | |
| CTCCCAATTCTTATCAGGGC+GGG | - | Chr7:88611689-88611708 | MsG0780041237.01.T01:CDS | 50.0% | |
| GAGGACATATGGAAGTCCCA+AGG | - | Chr7:88612519-88612538 | MsG0780041237.01.T01:intron | 50.0% | |
| GCACTTGGACTTCAGACCTT+GGG | + | Chr7:88612538-88612557 | None:intergenic | 50.0% | |
| GCCTACAAGAGACACTGACA+TGG | - | Chr7:88612604-88612623 | MsG0780041237.01.T01:intron | 50.0% | |
| GGAGATGCTGAAGGAGAATG+CGG | - | Chr7:88612973-88612992 | MsG0780041237.01.T01:intron | 50.0% | |
| GGAGTAAACCTTCTCGATGC+TGG | + | Chr7:88611465-88611484 | None:intergenic | 50.0% | |
| GTATCGTTCCCGTTCCCATA+TGG | + | Chr7:88611634-88611653 | None:intergenic | 50.0% | |
| GTCCCGCCCTGATAAGAATT+GGG | + | Chr7:88611694-88611713 | None:intergenic | 50.0% | |
| TGTGCAGATGGAGATGCTGA+AGG | - | Chr7:88612964-88612983 | MsG0780041237.01.T01:intron | 50.0% | |
| ! | GAATGCGGAAGGTATAGCGT+TGG | - | Chr7:88612988-88613007 | MsG0780041237.01.T01:intron | 50.0% |
| ! | GAATGGGCTTTCACCGCTTT+GGG | - | Chr7:88612773-88612792 | MsG0780041237.01.T01:intron | 50.0% |
| ! | TGAATGGGCTTTCACCGCTT+TGG | - | Chr7:88612772-88612791 | MsG0780041237.01.T01:intron | 50.0% |
| ! | TTTCATGGGTTTGGGGCAAG+TGG | - | Chr7:88612661-88612680 | MsG0780041237.01.T01:intron | 50.0% |
| CGTGGAGAAAGCTGTGCAGA+TGG | - | Chr7:88612952-88612971 | MsG0780041237.01.T01:intron | 55.0% | |
| GGATAGCCGCAAAGGACGAA+AGG | + | Chr7:88611491-88611510 | None:intergenic | 55.0% | |
| GGCACTTGGACTTCAGACCT+TGG | + | Chr7:88612539-88612558 | None:intergenic | 55.0% | |
| TCCGAGCCTTTCGTCCTTTG+CGG | - | Chr7:88611482-88611501 | MsG0780041237.01.T01:CDS | 55.0% | |
| TCGTCCTTTGCGGCTATCCA+TGG | - | Chr7:88611492-88611511 | MsG0780041237.01.T01:CDS | 55.0% | |
| ! | TCGAGTGACCAGCATCGAGA+AGG | - | Chr7:88611454-88611473 | MsG0780041237.01.T01:CDS | 55.0% |
| GCCGCAAAGGACGAAAGGCT+CGG | + | Chr7:88611486-88611505 | None:intergenic | 60.0% | |
| GTCAGCAGAGGAGAAGTCGC+AGG | - | Chr7:88612744-88612763 | MsG0780041237.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 88611434 | 88613138 | 88611434 | ID=MsG0780041237.01;Name=MsG0780041237.01 |
| Chr7 | mRNA | 88611434 | 88613138 | 88611434 | ID=MsG0780041237.01.T01;Parent=MsG0780041237.01;Name=MsG0780041237.01.T01;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|3|0|363 |
| Chr7 | exon | 88613059 | 88613138 | 88613059 | ID=MsG0780041237.01.T01:exon:12164;Parent=MsG0780041237.01.T01 |
| Chr7 | exon | 88612794 | 88612957 | 88612794 | ID=MsG0780041237.01.T01:exon:12163;Parent=MsG0780041237.01.T01 |
| Chr7 | exon | 88611434 | 88612281 | 88611434 | ID=MsG0780041237.01.T01:exon:12162;Parent=MsG0780041237.01.T01 |
| Chr7 | CDS | 88613059 | 88613138 | 88613059 | ID=MsG0780041237.01.T01:cds;Parent=MsG0780041237.01.T01 |
| Chr7 | CDS | 88612794 | 88612957 | 88612794 | ID=MsG0780041237.01.T01:cds;Parent=MsG0780041237.01.T01 |
| Chr7 | CDS | 88611434 | 88612281 | 88611434 | ID=MsG0780041237.01.T01:cds;Parent=MsG0780041237.01.T01 |
| Gene Sequence |
| Protein sequence |
