Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041234.01.T01 | MCH85815.1 | 70.783 | 332 | 89 | 2 | 21 | 352 | 3 | 326 | 3.72E-165 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041234.01.T01 | Q9FPT1 | 41.538 | 130 | 73 | 2 | 34 | 162 | 56 | 183 | 5.82E-26 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041234.01.T01 | A0A392MFG0 | 70.783 | 332 | 89 | 2 | 21 | 352 | 3 | 326 | 1.78e-165 | 474 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041234.01.T01 | MTR_7g107200 | 47.354 | 378 | 154 | 3 | 22 | 354 | 1 | 378 | 1.24e-114 | 338 |
| MsG0780041234.01.T01 | MTR_7g107160 | 55.652 | 345 | 122 | 11 | 24 | 354 | 120 | 447 | 7.64e-107 | 320 |
| MsG0780041234.01.T01 | MTR_7g107160 | 67.033 | 91 | 30 | 0 | 89 | 179 | 1 | 91 | 2.78e-33 | 128 |
| MsG0780041234.01.T01 | MTR_1g042160 | 50.151 | 331 | 140 | 5 | 22 | 350 | 1 | 308 | 2.77e-103 | 306 |
| MsG0780041234.01.T01 | MTR_8g011730 | 36.901 | 355 | 176 | 9 | 32 | 351 | 12 | 353 | 2.79e-68 | 218 |
| MsG0780041234.01.T01 | MTR_7g107170 | 58.385 | 161 | 59 | 1 | 190 | 350 | 111 | 263 | 4.93e-53 | 176 |
| MsG0780041234.01.T01 | MTR_7g107170 | 78.161 | 87 | 19 | 0 | 255 | 341 | 1 | 87 | 9.48e-37 | 134 |
| MsG0780041234.01.T01 | MTR_2g034780 | 41.096 | 146 | 83 | 1 | 200 | 345 | 119 | 261 | 9.53e-31 | 118 |
| MsG0780041234.01.T01 | MTR_1g041240 | 39.231 | 130 | 77 | 1 | 34 | 163 | 58 | 185 | 1.38e-26 | 111 |
| MsG0780041234.01.T01 | MTR_1g041240 | 39.231 | 130 | 77 | 1 | 34 | 163 | 59 | 186 | 1.41e-26 | 111 |
| MsG0780041234.01.T01 | MTR_1g041240 | 39.231 | 130 | 77 | 1 | 34 | 163 | 57 | 184 | 1.50e-26 | 111 |
| MsG0780041234.01.T01 | MTR_3g079840 | 38.462 | 130 | 77 | 2 | 34 | 162 | 57 | 184 | 2.56e-26 | 110 |
| MsG0780041234.01.T01 | MTR_3g079840 | 38.462 | 130 | 77 | 2 | 34 | 162 | 56 | 183 | 2.65e-26 | 110 |
| MsG0780041234.01.T01 | MTR_5g086700 | 36.923 | 130 | 79 | 2 | 34 | 162 | 61 | 188 | 4.54e-25 | 107 |
| MsG0780041234.01.T01 | MTR_5g086700 | 36.923 | 130 | 79 | 2 | 34 | 162 | 61 | 188 | 4.54e-25 | 107 |
| MsG0780041234.01.T01 | MTR_5g091450 | 34.921 | 126 | 80 | 2 | 34 | 158 | 33 | 157 | 8.42e-22 | 97.4 |
| MsG0780041234.01.T01 | MTR_5g091180 | 32.258 | 155 | 95 | 4 | 34 | 187 | 46 | 191 | 3.40e-18 | 86.3 |
| MsG0780041234.01.T01 | MTR_5g091550 | 31.613 | 155 | 95 | 3 | 32 | 185 | 17 | 161 | 7.26e-18 | 85.1 |
| MsG0780041234.01.T01 | MTR_5g091550 | 32.353 | 136 | 89 | 2 | 32 | 166 | 17 | 150 | 1.94e-17 | 83.6 |
| MsG0780041234.01.T01 | MTR_3g106700 | 27.811 | 169 | 108 | 2 | 8 | 162 | 376 | 544 | 8.59e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041234.01.T01 | AT5G06600 | 41.538 | 130 | 73 | 2 | 34 | 162 | 56 | 183 | 5.04e-27 | 112 |
| MsG0780041234.01.T01 | AT5G06600 | 41.538 | 130 | 73 | 2 | 34 | 162 | 55 | 182 | 5.88e-27 | 112 |
| MsG0780041234.01.T01 | AT5G06600 | 41.538 | 130 | 73 | 2 | 34 | 162 | 56 | 183 | 5.94e-27 | 112 |
| MsG0780041234.01.T01 | AT3G11910 | 40.769 | 130 | 74 | 2 | 34 | 162 | 55 | 182 | 3.20e-26 | 110 |
| MsG0780041234.01.T01 | AT3G11910 | 40.769 | 130 | 74 | 2 | 34 | 162 | 55 | 182 | 3.20e-26 | 110 |
| MsG0780041234.01.T01 | AT3G11910 | 40.769 | 130 | 74 | 2 | 34 | 162 | 54 | 181 | 3.38e-26 | 110 |
| MsG0780041234.01.T01 | AT3G11910 | 40.769 | 130 | 74 | 2 | 34 | 162 | 54 | 181 | 3.38e-26 | 110 |
| MsG0780041234.01.T01 | AT3G58250 | 26.866 | 335 | 194 | 11 | 22 | 338 | 1 | 302 | 2.59e-18 | 84.7 |
| MsG0780041234.01.T01 | AT3G58410 | 34.646 | 127 | 77 | 3 | 33 | 158 | 7 | 128 | 1.77e-16 | 79.7 |
| MsG0780041234.01.T01 | AT3G58340 | 32.031 | 128 | 82 | 3 | 33 | 158 | 7 | 131 | 2.37e-15 | 76.3 |
| MsG0780041234.01.T01 | AT3G58340 | 32.031 | 128 | 82 | 3 | 33 | 158 | 7 | 131 | 2.75e-15 | 76.3 |
| MsG0780041234.01.T01 | AT3G44790 | 25.641 | 312 | 207 | 9 | 32 | 329 | 3 | 303 | 5.09e-15 | 75.5 |
| MsG0780041234.01.T01 | AT3G58210 | 32.031 | 128 | 86 | 1 | 34 | 160 | 8 | 135 | 9.96e-15 | 74.7 |
| MsG0780041234.01.T01 | AT3G58350 | 32.061 | 131 | 85 | 3 | 33 | 160 | 7 | 136 | 1.36e-14 | 73.9 |
| MsG0780041234.01.T01 | AT3G58350 | 32.061 | 131 | 85 | 3 | 33 | 160 | 7 | 136 | 1.36e-14 | 73.9 |
| MsG0780041234.01.T01 | AT3G58270 | 25.157 | 318 | 184 | 10 | 34 | 317 | 8 | 305 | 2.04e-14 | 73.9 |
| MsG0780041234.01.T01 | AT3G58270 | 25.157 | 318 | 184 | 10 | 34 | 317 | 8 | 305 | 2.04e-14 | 73.9 |
| MsG0780041234.01.T01 | AT3G58270 | 25.157 | 318 | 184 | 10 | 34 | 317 | 8 | 305 | 2.04e-14 | 73.9 |
| MsG0780041234.01.T01 | AT3G58370 | 33.333 | 129 | 80 | 4 | 34 | 158 | 9 | 135 | 2.49e-13 | 70.1 |
| MsG0780041234.01.T01 | AT3G58410 | 33.071 | 127 | 65 | 3 | 33 | 158 | 28 | 135 | 2.69e-13 | 70.5 |
| MsG0780041234.01.T01 | AT3G44800 | 30.769 | 130 | 88 | 2 | 32 | 160 | 3 | 131 | 4.21e-13 | 70.1 |
| MsG0780041234.01.T01 | AT3G58260 | 27.517 | 298 | 177 | 10 | 35 | 325 | 9 | 274 | 2.69e-12 | 67.4 |
| MsG0780041234.01.T01 | AT2G05410 | 31.496 | 127 | 85 | 2 | 35 | 160 | 9 | 134 | 5.68e-12 | 66.2 |
| MsG0780041234.01.T01 | AT2G25320 | 27.848 | 158 | 103 | 2 | 34 | 181 | 404 | 560 | 1.84e-11 | 66.2 |
| MsG0780041234.01.T01 | AT2G25320 | 27.848 | 158 | 103 | 2 | 34 | 181 | 405 | 561 | 1.84e-11 | 66.2 |
| MsG0780041234.01.T01 | AT3G58200 | 33.621 | 116 | 73 | 3 | 34 | 147 | 8 | 121 | 2.20e-11 | 64.7 |
| MsG0780041234.01.T01 | AT2G25320 | 27.848 | 158 | 103 | 2 | 34 | 181 | 405 | 561 | 2.59e-11 | 65.9 |
Find 68 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAAGGATCTTCAAACTTTC+TGG | 0.140117 | 7:-88557016 | MsG0780041234.01.T01:CDS |
| CCATGAGCTCACTTACATTT+TGG | 0.177848 | 7:+88557231 | None:intergenic |
| CAAGTCAAATTGAAATTAAA+TGG | 0.236977 | 7:+88556981 | None:intergenic |
| CTTCTTCTAGCTTTGGCCTT+AGG | 0.245031 | 7:+88557261 | None:intergenic |
| ATGGAATAAAGCTTGGAATA+TGG | 0.257239 | 7:-88558236 | MsG0780041234.01.T01:CDS |
| AGAAAAGAAGTCGCAAGTTT+AGG | 0.259373 | 7:-88557118 | MsG0780041234.01.T01:CDS |
| CCTAGTGTTCAATCGGCTTT+AGG | 0.267455 | 7:-88556951 | MsG0780041234.01.T01:CDS |
| CTCGCACCTTTCTTGTCTTA+AGG | 0.292864 | 7:+88557057 | None:intergenic |
| GGAATGGGCGTTCACTGCTT+TGG | 0.299493 | 7:-88557096 | MsG0780041234.01.T01:CDS |
| CCTTGGCCTTCTTCTAGCTT+TGG | 0.325091 | 7:+88557254 | None:intergenic |
| GAATGGGCGTTCACTGCTTT+GGG | 0.331310 | 7:-88557095 | MsG0780041234.01.T01:CDS |
| GAAAAGAAGTCGCAAGTTTA+GGG | 0.346429 | 7:-88557117 | MsG0780041234.01.T01:CDS |
| TTCTTCTAGCTTTGGCCTTA+GGG | 0.362417 | 7:+88557262 | None:intergenic |
| TTCTATGTGTCCCATACCCT+TGG | 0.390125 | 7:+88557205 | None:intergenic |
| TTCACAATAAACCCCTTGTT+AGG | 0.392129 | 7:+88557371 | None:intergenic |
| TGATGCTGCAAGAGACTTGT+TGG | 0.396572 | 7:-88556811 | MsG0780041234.01.T01:CDS |
| TAAGGATCTTCAAACTTTCT+GGG | 0.397628 | 7:-88557015 | MsG0780041234.01.T01:CDS |
| TATGAATGACTTGGCTTGTA+AGG | 0.404544 | 7:-88557033 | MsG0780041234.01.T01:CDS |
| TGGAATAAAGCTTGGAATAT+GGG | 0.416500 | 7:-88558235 | MsG0780041234.01.T01:CDS |
| GCTCATGGATTCCAAGGGTA+TGG | 0.447022 | 7:-88557216 | MsG0780041234.01.T01:CDS |
| AGGATAATTTATCTGTCTAA+AGG | 0.447245 | 7:-88557978 | MsG0780041234.01.T01:CDS |
| AGCAACATTGCAATCACAAA+AGG | 0.454741 | 7:-88557834 | MsG0780041234.01.T01:intron |
| CCTAAAGCCGATTGAACACT+AGG | 0.454981 | 7:+88556951 | None:intergenic |
| CATTTAATTTCAATTTGACT+TGG | 0.459388 | 7:-88556980 | MsG0780041234.01.T01:CDS |
| GTTAGAGCCTAGTGTTCAAT+CGG | 0.460269 | 7:-88556958 | MsG0780041234.01.T01:CDS |
| ATGGATTTGGATGCTGAACT+AGG | 0.469976 | 7:-88556768 | MsG0780041234.01.T01:CDS |
| TAGCTTTGGCCTTAGGGAAG+CGG | 0.483205 | 7:+88557268 | None:intergenic |
| GGTAGCTCAAGAGTTGGAAT+TGG | 0.485466 | 7:-88556874 | MsG0780041234.01.T01:CDS |
| GGATAGCCGCCTAGGACAAA+AGG | 0.485898 | 7:+88558124 | None:intergenic |
| CCAAAATGTAAGTGAGCTCA+TGG | 0.490013 | 7:-88557231 | MsG0780041234.01.T01:CDS |
| ACTCTACATGGAATAAAGCT+TGG | 0.491560 | 7:-88558243 | MsG0780041234.01.T01:CDS |
| AAGTCGCAAGTTTAGGGAAT+GGG | 0.503721 | 7:-88557111 | MsG0780041234.01.T01:CDS |
| TTATTTCCTTAAGACAAGAA+AGG | 0.506188 | 7:-88557063 | MsG0780041234.01.T01:CDS |
| TTGTCCTAGGCGGCTATCCA+TGG | 0.509014 | 7:-88558120 | MsG0780041234.01.T01:intron |
| AGAAAAGCTAAAGGATAATG+TGG | 0.523643 | 7:-88556895 | MsG0780041234.01.T01:CDS |
| TGCTGGCACTCAATAAGTGA+AGG | 0.542266 | 7:+88557140 | None:intergenic |
| CTAAGGCCAAAGCTAGAAGA+AGG | 0.558810 | 7:-88557260 | MsG0780041234.01.T01:CDS |
| TAATGTGGTAGCTCAAGAGT+TGG | 0.559742 | 7:-88556880 | MsG0780041234.01.T01:CDS |
| AAGTGAGCTCATGGATTCCA+AGG | 0.561824 | 7:-88557222 | MsG0780041234.01.T01:CDS |
| CTCATGGATTCCAAGGGTAT+GGG | 0.563344 | 7:-88557215 | MsG0780041234.01.T01:CDS |
| AAACATACTTCATCTAGTAA+TGG | 0.564644 | 7:+88557170 | None:intergenic |
| CATACCATGGATAGCCGCCT+AGG | 0.565038 | 7:+88558116 | None:intergenic |
| GCAAACTGCGAATATGTTTG+AGG | 0.565917 | 7:-88557907 | MsG0780041234.01.T01:CDS |
| AAAAGTTTGAGAAATTTACA+TGG | 0.568464 | 7:-88558192 | MsG0780041234.01.T01:CDS |
| GAATTTCTCTCGCTTGAACA+AGG | 0.568755 | 7:-88558161 | MsG0780041234.01.T01:CDS |
| GAAGTCGCAAGTTTAGGGAA+TGG | 0.569896 | 7:-88557112 | MsG0780041234.01.T01:CDS |
| GTAACTTAACCGCTTCCCTA+AGG | 0.570009 | 7:-88557277 | MsG0780041234.01.T01:CDS |
| AGAAGTTTGAGAACTCTACA+TGG | 0.576561 | 7:-88558255 | MsG0780041234.01.T01:CDS |
| TCTAAAGGTGGGAGGAACAC+AGG | 0.578325 | 7:-88557963 | MsG0780041234.01.T01:CDS |
| GCCGCCTAGGACAAAAGGCT+CGG | 0.579082 | 7:+88558129 | None:intergenic |
| AAAGGAGGTAGAAAAGCTAA+AGG | 0.580307 | 7:-88556904 | MsG0780041234.01.T01:CDS |
| TTCATCTAGTAATGGAACAA+AGG | 0.580421 | 7:+88557178 | None:intergenic |
| CTGCGAATATGTTTGAGGGA+TGG | 0.586576 | 7:-88557902 | MsG0780041234.01.T01:CDS |
| GAGAAACGACTAAATCAAGA+AGG | 0.587356 | 7:-88557299 | MsG0780041234.01.T01:CDS |
| ATAATTTATCTGTCTAAAGG+TGG | 0.588720 | 7:-88557975 | MsG0780041234.01.T01:CDS |
| CTCAAGAGTTGGAATTGGAG+AGG | 0.595626 | 7:-88556869 | MsG0780041234.01.T01:CDS |
| TAATTTATCTGTCTAAAGGT+GGG | 0.604853 | 7:-88557974 | MsG0780041234.01.T01:CDS |
| TGAGCTTCATGATCCTAACA+AGG | 0.607224 | 7:-88557384 | MsG0780041234.01.T01:CDS |
| CAAACTGCGAATATGTTTGA+GGG | 0.611736 | 7:-88557906 | MsG0780041234.01.T01:CDS |
| GGTGCGAGATATGAATGACT+TGG | 0.624462 | 7:-88557042 | MsG0780041234.01.T01:CDS |
| TGCTGCAAGAGACTTGTTGG+AGG | 0.627839 | 7:-88556808 | MsG0780041234.01.T01:CDS |
| GCTGGCACTCAATAAGTGAA+GGG | 0.632129 | 7:+88557141 | None:intergenic |
| AGCTTCATGATCCTAACAAG+GGG | 0.641496 | 7:-88557382 | MsG0780041234.01.T01:CDS |
| CCAAAGCTAGAAGAAGGCCA+AGG | 0.642510 | 7:-88557254 | MsG0780041234.01.T01:CDS |
| GAGCTTCATGATCCTAACAA+GGG | 0.645789 | 7:-88557383 | MsG0780041234.01.T01:CDS |
| AGTGAGCTCATGGATTCCAA+GGG | 0.660252 | 7:-88557221 | MsG0780041234.01.T01:CDS |
| TTTATCTGTCTAAAGGTGGG+AGG | 0.662324 | 7:-88557971 | MsG0780041234.01.T01:CDS |
| GGATCTTCAAACTTTCTGGG+AGG | 0.688818 | 7:-88557012 | MsG0780041234.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTTAATTTCATTATTATA+AGG | + | Chr7:88557364-88557383 | None:intergenic | 10.0% |
| !! | AATTTCATTATTATACTAAC+CGG | + | Chr7:88557340-88557359 | None:intergenic | 15.0% |
| !! | AAAAGTTTGAGAAATTTACA+TGG | - | Chr7:88556840-88556859 | MsG0780041234.01.T01:CDS | 20.0% |
| !! | CAAGTCAAATTGAAATTAAA+TGG | + | Chr7:88558054-88558073 | None:intergenic | 20.0% |
| !! | CATGTTACAATTTATTAGAT+CGG | - | Chr7:88556962-88556981 | MsG0780041234.01.T01:CDS | 20.0% |
| !!! | AAGTTATTTTGAGAAACTAA+AGG | - | Chr7:88558110-88558129 | MsG0780041234.01.T01:intron | 20.0% |
| !!! | ATTTTTTTTATCAAAGCAAC+CGG | - | Chr7:88557318-88557337 | MsG0780041234.01.T01:CDS | 20.0% |
| !!! | CATTTAATTTCAATTTGACT+TGG | - | Chr7:88558052-88558071 | MsG0780041234.01.T01:intron | 20.0% |
| ! | AAACATACTTCATCTAGTAA+TGG | + | Chr7:88557865-88557884 | None:intergenic | 25.0% |
| ! | AGGATAATTTATCTGTCTAA+AGG | - | Chr7:88557054-88557073 | MsG0780041234.01.T01:CDS | 25.0% |
| ! | ATAATTTATCTGTCTAAAGG+TGG | - | Chr7:88557057-88557076 | MsG0780041234.01.T01:CDS | 25.0% |
| ! | TAATTTATCTGTCTAAAGGT+GGG | - | Chr7:88557058-88557077 | MsG0780041234.01.T01:CDS | 25.0% |
| ! | TTATTTCCTTAAGACAAGAA+AGG | - | Chr7:88557969-88557988 | MsG0780041234.01.T01:CDS | 25.0% |
| ! | TTCAATAATTGTTTGTAGAG+AGG | + | Chr7:88557237-88557256 | None:intergenic | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | + | Chr7:88556932-88556951 | None:intergenic | 25.0% |
| ! | TTGAATTCATAGTTAGATTC+TGG | + | Chr7:88557583-88557602 | None:intergenic | 25.0% |
| !! | AAAATACTCTTTTACACGTA+CGG | - | Chr7:88556989-88557008 | MsG0780041234.01.T01:CDS | 25.0% |
| !!! | ATTACCATTGACTGAAATTT+TGG | - | Chr7:88557480-88557499 | MsG0780041234.01.T01:intron | 25.0% |
| !!! | GATATGATTTGGTTTTGTTT+AGG | - | Chr7:88557034-88557053 | MsG0780041234.01.T01:CDS | 25.0% |
| !!! | GTGTTTTGAATGATATGATT+TGG | - | Chr7:88557023-88557042 | MsG0780041234.01.T01:CDS | 25.0% |
| !!! | TTATTTTGAGAAACTAAAGG+AGG | - | Chr7:88558113-88558132 | MsG0780041234.01.T01:intron | 25.0% |
| AGAAAAGCTAAAGGATAATG+TGG | - | Chr7:88558137-88558156 | MsG0780041234.01.T01:CDS | 30.0% | |
| AGAACCAAAATTTCAGTCAA+TGG | + | Chr7:88557487-88557506 | None:intergenic | 30.0% | |
| ATGGAATAAAGCTTGGAATA+TGG | - | Chr7:88556796-88556815 | MsG0780041234.01.T01:CDS | 30.0% | |
| CAGCCTTCAAAAAAATTGAT+AGG | + | Chr7:88557104-88557123 | None:intergenic | 30.0% | |
| CTAAACAAGCATATATATGC+TGG | + | Chr7:88557431-88557450 | None:intergenic | 30.0% | |
| GTGAAAAATGCTATCATTGT+TGG | - | Chr7:88557679-88557698 | MsG0780041234.01.T01:intron | 30.0% | |
| TAAGGATCTTCAAACTTTCT+GGG | - | Chr7:88558017-88558036 | MsG0780041234.01.T01:intron | 30.0% | |
| TGGAATAAAGCTTGGAATAT+GGG | - | Chr7:88556797-88556816 | MsG0780041234.01.T01:CDS | 30.0% | |
| ! | GGTTCTTAGTATTTTCATAG+AGG | - | Chr7:88557501-88557520 | MsG0780041234.01.T01:intron | 30.0% |
| ! | TTCATCTAGTAATGGAACAA+AGG | + | Chr7:88557857-88557876 | None:intergenic | 30.0% |
| !! | AGATTTTGAAGAGATGGATT+TGG | - | Chr7:88558251-88558270 | MsG0780041234.01.T01:CDS | 30.0% |
| !!! | CAGCCTATCAATTTTTTTGA+AGG | - | Chr7:88557098-88557117 | MsG0780041234.01.T01:CDS | 30.0% |
| AAAGGAGGTAGAAAAGCTAA+AGG | - | Chr7:88558128-88558147 | MsG0780041234.01.T01:CDS | 35.0% | |
| ACTCTACATGGAATAAAGCT+TGG | - | Chr7:88556789-88556808 | MsG0780041234.01.T01:CDS | 35.0% | |
| AGAAAAGAAGTCGCAAGTTT+AGG | - | Chr7:88557914-88557933 | MsG0780041234.01.T01:CDS | 35.0% | |
| AGAAGTTTGAGAACTCTACA+TGG | - | Chr7:88556777-88556796 | MsG0780041234.01.T01:CDS | 35.0% | |
| AGCAACATTGCAATCACAAA+AGG | - | Chr7:88557198-88557217 | MsG0780041234.01.T01:CDS | 35.0% | |
| CAAACTGCGAATATGTTTGA+GGG | - | Chr7:88557126-88557145 | MsG0780041234.01.T01:CDS | 35.0% | |
| GAAAAGAAGTCGCAAGTTTA+GGG | - | Chr7:88557915-88557934 | MsG0780041234.01.T01:CDS | 35.0% | |
| GAGAAACGACTAAATCAAGA+AGG | - | Chr7:88557733-88557752 | MsG0780041234.01.T01:intron | 35.0% | |
| GTAAGGATCTTCAAACTTTC+TGG | - | Chr7:88558016-88558035 | MsG0780041234.01.T01:intron | 35.0% | |
| TTCACAATAAACCCCTTGTT+AGG | + | Chr7:88557664-88557683 | None:intergenic | 35.0% | |
| ! | AATGCAAGTCAGTTTTTCTG+GGG | - | Chr7:88557601-88557620 | MsG0780041234.01.T01:intron | 35.0% |
| ! | CAATGCAAGTCAGTTTTTCT+GGG | - | Chr7:88557600-88557619 | MsG0780041234.01.T01:intron | 35.0% |
| ! | TCAATGCAAGTCAGTTTTTC+TGG | - | Chr7:88557599-88557618 | MsG0780041234.01.T01:intron | 35.0% |
| !! | TATGAATGACTTGGCTTGTA+AGG | - | Chr7:88557999-88558018 | MsG0780041234.01.T01:intron | 35.0% |
| AAGTCGCAAGTTTAGGGAAT+GGG | - | Chr7:88557921-88557940 | MsG0780041234.01.T01:CDS | 40.0% | |
| AGCTTCATGATCCTAACAAG+GGG | - | Chr7:88557650-88557669 | MsG0780041234.01.T01:intron | 40.0% | |
| ATGGATTTGGATGCTGAACT+AGG | - | Chr7:88558264-88558283 | MsG0780041234.01.T01:CDS | 40.0% | |
| CCAAAATGTAAGTGAGCTCA+TGG | - | Chr7:88557801-88557820 | MsG0780041234.01.T01:intron | 40.0% | |
| GAATTTCTCTCGCTTGAACA+AGG | - | Chr7:88556871-88556890 | MsG0780041234.01.T01:CDS | 40.0% | |
| GAGCTTCATGATCCTAACAA+GGG | - | Chr7:88557649-88557668 | MsG0780041234.01.T01:intron | 40.0% | |
| GCAAACTGCGAATATGTTTG+AGG | - | Chr7:88557125-88557144 | MsG0780041234.01.T01:CDS | 40.0% | |
| GTTAGAGCCTAGTGTTCAAT+CGG | - | Chr7:88558074-88558093 | MsG0780041234.01.T01:intron | 40.0% | |
| TAATGTGGTAGCTCAAGAGT+TGG | - | Chr7:88558152-88558171 | MsG0780041234.01.T01:CDS | 40.0% | |
| TGAGCTTCATGATCCTAACA+AGG | - | Chr7:88557648-88557667 | MsG0780041234.01.T01:intron | 40.0% | |
| TTTATCTGTCTAAAGGTGGG+AGG | - | Chr7:88557061-88557080 | MsG0780041234.01.T01:CDS | 40.0% | |
| ! | CCATGAGCTCACTTACATTT+TGG | + | Chr7:88557804-88557823 | None:intergenic | 40.0% |
| !! | GGCAGTAGATTTTGAAGAGA+TGG | - | Chr7:88558245-88558264 | MsG0780041234.01.T01:CDS | 40.0% |
| !! | TTCTTCTAGCTTTGGCCTTA+GGG | + | Chr7:88557773-88557792 | None:intergenic | 40.0% |
| AAGTGAGCTCATGGATTCCA+AGG | - | Chr7:88557810-88557829 | MsG0780041234.01.T01:intron | 45.0% | |
| AGTGAGCTCATGGATTCCAA+GGG | - | Chr7:88557811-88557830 | MsG0780041234.01.T01:intron | 45.0% | |
| CCTAAAGCCGATTGAACACT+AGG | + | Chr7:88558084-88558103 | None:intergenic | 45.0% | |
| CTAAGGCCAAAGCTAGAAGA+AGG | - | Chr7:88557772-88557791 | MsG0780041234.01.T01:intron | 45.0% | |
| CTCAAGAGTTGGAATTGGAG+AGG | - | Chr7:88558163-88558182 | MsG0780041234.01.T01:CDS | 45.0% | |
| CTCGCACCTTTCTTGTCTTA+AGG | + | Chr7:88557978-88557997 | None:intergenic | 45.0% | |
| CTGCGAATATGTTTGAGGGA+TGG | - | Chr7:88557130-88557149 | MsG0780041234.01.T01:CDS | 45.0% | |
| GAAGTCGCAAGTTTAGGGAA+TGG | - | Chr7:88557920-88557939 | MsG0780041234.01.T01:CDS | 45.0% | |
| GCTGGCACTCAATAAGTGAA+GGG | + | Chr7:88557894-88557913 | None:intergenic | 45.0% | |
| GGATCTTCAAACTTTCTGGG+AGG | - | Chr7:88558020-88558039 | MsG0780041234.01.T01:intron | 45.0% | |
| GGTAGCTCAAGAGTTGGAAT+TGG | - | Chr7:88558158-88558177 | MsG0780041234.01.T01:CDS | 45.0% | |
| GGTGCGAGATATGAATGACT+TGG | - | Chr7:88557990-88558009 | MsG0780041234.01.T01:intron | 45.0% | |
| GTAACTTAACCGCTTCCCTA+AGG | - | Chr7:88557755-88557774 | MsG0780041234.01.T01:intron | 45.0% | |
| TGATGCTGCAAGAGACTTGT+TGG | - | Chr7:88558221-88558240 | MsG0780041234.01.T01:CDS | 45.0% | |
| TGCTGGCACTCAATAAGTGA+AGG | + | Chr7:88557895-88557914 | None:intergenic | 45.0% | |
| TTCTATGTGTCCCATACCCT+TGG | + | Chr7:88557830-88557849 | None:intergenic | 45.0% | |
| ! | ACTTGCGACTTCTTTTCTGC+TGG | + | Chr7:88557912-88557931 | None:intergenic | 45.0% |
| ! | CCTAGTGTTCAATCGGCTTT+AGG | - | Chr7:88558081-88558100 | MsG0780041234.01.T01:intron | 45.0% |
| ! | CTCATGGATTCCAAGGGTAT+GGG | - | Chr7:88557817-88557836 | MsG0780041234.01.T01:intron | 45.0% |
| !! | CTTCTTCTAGCTTTGGCCTT+AGG | + | Chr7:88557774-88557793 | None:intergenic | 45.0% |
| !! | GCTCACTTACATTTTGGCCT+TGG | + | Chr7:88557798-88557817 | None:intergenic | 45.0% |
| CCAAAGCTAGAAGAAGGCCA+AGG | - | Chr7:88557778-88557797 | MsG0780041234.01.T01:intron | 50.0% | |
| GAATGGGCGTTCACTGCTTT+GGG | - | Chr7:88557937-88557956 | MsG0780041234.01.T01:CDS | 50.0% | |
| GCTCATGGATTCCAAGGGTA+TGG | - | Chr7:88557816-88557835 | MsG0780041234.01.T01:intron | 50.0% | |
| TCTAAAGGTGGGAGGAACAC+AGG | - | Chr7:88557069-88557088 | MsG0780041234.01.T01:CDS | 50.0% | |
| ! | TACTCCGAGCCTTTTGTCCT+AGG | - | Chr7:88556899-88556918 | MsG0780041234.01.T01:CDS | 50.0% |
| !! | CCTTGGCCTTCTTCTAGCTT+TGG | + | Chr7:88557781-88557800 | None:intergenic | 50.0% |
| !! | TAGCTTTGGCCTTAGGGAAG+CGG | + | Chr7:88557767-88557786 | None:intergenic | 50.0% |
| !! | TGCTGCAAGAGACTTGTTGG+AGG | - | Chr7:88558224-88558243 | MsG0780041234.01.T01:CDS | 50.0% |
| CATACCATGGATAGCCGCCT+AGG | + | Chr7:88556919-88556938 | None:intergenic | 55.0% | |
| GGAATGGGCGTTCACTGCTT+TGG | - | Chr7:88557936-88557955 | MsG0780041234.01.T01:CDS | 55.0% | |
| GGATAGCCGCCTAGGACAAA+AGG | + | Chr7:88556911-88556930 | None:intergenic | 55.0% | |
| TTGTCCTAGGCGGCTATCCA+TGG | - | Chr7:88556912-88556931 | MsG0780041234.01.T01:CDS | 55.0% | |
| ! | TCCGAGCCTTTTGTCCTAGG+CGG | - | Chr7:88556902-88556921 | MsG0780041234.01.T01:CDS | 55.0% |
| GCCGCCTAGGACAAAAGGCT+CGG | + | Chr7:88556906-88556925 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 88556752 | 88558302 | 88556752 | ID=MsG0780041234.01;Name=MsG0780041234.01 |
| Chr7 | mRNA | 88556752 | 88558302 | 88556752 | ID=MsG0780041234.01.T01;Parent=MsG0780041234.01;Name=MsG0780041234.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|0.66|3|0|354 |
| Chr7 | exon | 88558121 | 88558302 | 88558121 | ID=MsG0780041234.01.T01:exon:12153;Parent=MsG0780041234.01.T01 |
| Chr7 | exon | 88557835 | 88557998 | 88557835 | ID=MsG0780041234.01.T01:exon:12152;Parent=MsG0780041234.01.T01 |
| Chr7 | exon | 88556752 | 88557470 | 88556752 | ID=MsG0780041234.01.T01:exon:12151;Parent=MsG0780041234.01.T01 |
| Chr7 | CDS | 88558121 | 88558302 | 88558121 | ID=MsG0780041234.01.T01:cds;Parent=MsG0780041234.01.T01 |
| Chr7 | CDS | 88557835 | 88557998 | 88557835 | ID=MsG0780041234.01.T01:cds;Parent=MsG0780041234.01.T01 |
| Chr7 | CDS | 88556752 | 88557470 | 88556752 | ID=MsG0780041234.01.T01:cds;Parent=MsG0780041234.01.T01 |
| Gene Sequence |
| Protein sequence |
