Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048170.01.T01 | MCH85815.1 | 67.674 | 331 | 94 | 2 | 62 | 386 | 3 | 326 | 1.10E-152 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048170.01.T01 | Q9FPT1 | 37.5 | 128 | 74 | 2 | 75 | 196 | 56 | 183 | 9.88E-20 | 95.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048170.01.T01 | A0A392MFG0 | 67.674 | 331 | 94 | 2 | 62 | 386 | 3 | 326 | 5.24e-153 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048170.01.T01 | MTR_7g107200 | 46.174 | 379 | 150 | 5 | 63 | 388 | 1 | 378 | 6.16e-106 | 317 |
| MsG0080048170.01.T01 | MTR_7g107160 | 54.070 | 344 | 122 | 10 | 65 | 388 | 120 | 447 | 2.71e-101 | 307 |
| MsG0080048170.01.T01 | MTR_7g107160 | 63.265 | 98 | 36 | 0 | 123 | 220 | 1 | 98 | 6.22e-33 | 128 |
| MsG0080048170.01.T01 | MTR_1g042160 | 48.640 | 331 | 138 | 6 | 63 | 384 | 1 | 308 | 4.62e-95 | 286 |
| MsG0080048170.01.T01 | MTR_8g011730 | 35.775 | 355 | 173 | 10 | 73 | 385 | 12 | 353 | 2.44e-61 | 201 |
| MsG0080048170.01.T01 | MTR_7g107170 | 58.385 | 161 | 59 | 1 | 224 | 384 | 111 | 263 | 9.21e-53 | 177 |
| MsG0080048170.01.T01 | MTR_7g107170 | 78.161 | 87 | 19 | 0 | 289 | 375 | 1 | 87 | 3.58e-36 | 133 |
| MsG0080048170.01.T01 | MTR_2g034780 | 41.096 | 146 | 83 | 1 | 234 | 379 | 119 | 261 | 2.71e-30 | 117 |
| MsG0080048170.01.T01 | MTR_1g041240 | 36.364 | 132 | 71 | 2 | 75 | 197 | 59 | 186 | 1.74e-21 | 97.1 |
| MsG0080048170.01.T01 | MTR_1g041240 | 36.364 | 132 | 71 | 2 | 75 | 197 | 58 | 185 | 1.77e-21 | 97.1 |
| MsG0080048170.01.T01 | MTR_1g041240 | 36.364 | 132 | 71 | 2 | 75 | 197 | 57 | 184 | 1.78e-21 | 97.1 |
| MsG0080048170.01.T01 | MTR_3g079840 | 35.156 | 128 | 77 | 3 | 75 | 196 | 56 | 183 | 3.56e-20 | 93.2 |
| MsG0080048170.01.T01 | MTR_3g079840 | 35.156 | 128 | 77 | 3 | 75 | 196 | 57 | 184 | 3.63e-20 | 93.2 |
| MsG0080048170.01.T01 | MTR_5g086700 | 33.594 | 128 | 79 | 3 | 75 | 196 | 61 | 188 | 4.88e-19 | 89.7 |
| MsG0080048170.01.T01 | MTR_5g086700 | 33.594 | 128 | 79 | 3 | 75 | 196 | 61 | 188 | 4.97e-19 | 89.7 |
| MsG0080048170.01.T01 | MTR_5g091450 | 30.233 | 129 | 75 | 3 | 75 | 192 | 33 | 157 | 1.33e-15 | 79.0 |
| MsG0080048170.01.T01 | MTR_5g091180 | 29.221 | 154 | 94 | 4 | 75 | 221 | 46 | 191 | 6.27e-13 | 70.9 |
| MsG0080048170.01.T01 | MTR_5g091550 | 28.758 | 153 | 95 | 4 | 73 | 219 | 17 | 161 | 6.75e-13 | 70.5 |
| MsG0080048170.01.T01 | MTR_5g091550 | 29.104 | 134 | 89 | 3 | 73 | 200 | 17 | 150 | 1.42e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048170.01.T01 | AT5G06600 | 37.500 | 128 | 74 | 2 | 75 | 196 | 56 | 183 | 8.17e-21 | 95.1 |
| MsG0080048170.01.T01 | AT5G06600 | 37.500 | 128 | 74 | 2 | 75 | 196 | 55 | 182 | 9.98e-21 | 95.1 |
| MsG0080048170.01.T01 | AT5G06600 | 37.500 | 128 | 74 | 2 | 75 | 196 | 56 | 183 | 1.01e-20 | 95.1 |
| MsG0080048170.01.T01 | AT3G11910 | 36.719 | 128 | 75 | 2 | 75 | 196 | 55 | 182 | 6.21e-20 | 92.4 |
| MsG0080048170.01.T01 | AT3G11910 | 36.719 | 128 | 75 | 2 | 75 | 196 | 55 | 182 | 6.21e-20 | 92.4 |
| MsG0080048170.01.T01 | AT3G11910 | 36.719 | 128 | 75 | 2 | 75 | 196 | 54 | 181 | 6.32e-20 | 92.4 |
| MsG0080048170.01.T01 | AT3G11910 | 36.719 | 128 | 75 | 2 | 75 | 196 | 54 | 181 | 6.32e-20 | 92.4 |
| MsG0080048170.01.T01 | AT3G44790 | 24.841 | 314 | 192 | 9 | 73 | 359 | 3 | 299 | 2.28e-12 | 67.8 |
| MsG0080048170.01.T01 | AT3G58250 | 25.373 | 335 | 192 | 12 | 63 | 372 | 1 | 302 | 2.55e-12 | 67.8 |
| MsG0080048170.01.T01 | AT3G58350 | 29.323 | 133 | 79 | 4 | 74 | 194 | 7 | 136 | 3.20e-11 | 64.3 |
| MsG0080048170.01.T01 | AT3G58350 | 29.323 | 133 | 79 | 4 | 74 | 194 | 7 | 136 | 3.20e-11 | 64.3 |
| MsG0080048170.01.T01 | AT3G58340 | 28.800 | 125 | 83 | 2 | 74 | 192 | 7 | 131 | 4.71e-11 | 63.9 |
| MsG0080048170.01.T01 | AT3G58340 | 28.800 | 125 | 83 | 2 | 74 | 192 | 7 | 131 | 5.41e-11 | 63.9 |
| MsG0080048170.01.T01 | AT3G58270 | 24.127 | 315 | 184 | 10 | 75 | 351 | 8 | 305 | 7.19e-11 | 63.5 |
| MsG0080048170.01.T01 | AT3G58270 | 24.127 | 315 | 184 | 10 | 75 | 351 | 8 | 305 | 7.19e-11 | 63.5 |
| MsG0080048170.01.T01 | AT3G58270 | 24.127 | 315 | 184 | 10 | 75 | 351 | 8 | 305 | 7.19e-11 | 63.5 |
| MsG0080048170.01.T01 | AT3G58410 | 30.400 | 125 | 78 | 4 | 74 | 192 | 7 | 128 | 8.26e-11 | 63.2 |
Find 73 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAAGAATGAAGAGATTT+TGG | 0.114750 | contig235end:-8467 | MsG0080048170.01.T01:CDS |
| GTAAGGATCTTCAAACTTTC+TGG | 0.140117 | contig235end:-6421 | MsG0080048170.01.T01:CDS |
| TGTACATAAGGCTTTGAATA+TGG | 0.172358 | contig235end:-7703 | MsG0080048170.01.T01:CDS |
| CCATGAGCTCACTTACATTT+TGG | 0.177848 | contig235end:+6636 | MsG0080048170.01.T01:intergenic |
| CAAGTCAAATTGAAATTAAA+TGG | 0.236977 | contig235end:+6386 | MsG0080048170.01.T01:intergenic |
| CTTCTTCTAGCTTTGGCCTT+AGG | 0.245031 | contig235end:+6666 | MsG0080048170.01.T01:intergenic |
| ATGGAATAAAGCTTGGAATA+TGG | 0.257239 | contig235end:-7640 | MsG0080048170.01.T01:CDS |
| AGAAAAGAAGTCGCAAGTTT+AGG | 0.259373 | contig235end:-6523 | MsG0080048170.01.T01:CDS |
| CCTAGTGTTCAATCGGCTTT+AGG | 0.267455 | contig235end:-6356 | MsG0080048170.01.T01:CDS |
| CTCGCACCTTTCTTGTCTTA+AGG | 0.292864 | contig235end:+6462 | MsG0080048170.01.T01:intergenic |
| GGAATGGGCGTTCACTGCTT+TGG | 0.299493 | contig235end:-6501 | MsG0080048170.01.T01:CDS |
| CCTTGGCCTTCTTCTAGCTT+TGG | 0.325091 | contig235end:+6659 | MsG0080048170.01.T01:intergenic |
| GAATGGGCGTTCACTGCTTT+GGG | 0.331310 | contig235end:-6500 | MsG0080048170.01.T01:CDS |
| GAAAAGAAGTCGCAAGTTTA+GGG | 0.346429 | contig235end:-6522 | MsG0080048170.01.T01:CDS |
| GTACATAAGGCTTTGAATAT+GGG | 0.355775 | contig235end:-7702 | MsG0080048170.01.T01:CDS |
| TTCTTCTAGCTTTGGCCTTA+GGG | 0.362417 | contig235end:+6667 | MsG0080048170.01.T01:intergenic |
| ACTATATATATTTGTACATA+AGG | 0.377426 | contig235end:-7715 | MsG0080048170.01.T01:CDS |
| TTCTATGTGTCCCATACCCT+TGG | 0.390125 | contig235end:+6610 | MsG0080048170.01.T01:intergenic |
| TTCACAATAAACCCCTTGTT+AGG | 0.392129 | contig235end:+6776 | MsG0080048170.01.T01:intergenic |
| TGATGCTGCAAGAGACTTGT+TGG | 0.396572 | contig235end:-6216 | MsG0080048170.01.T01:CDS |
| TAAGGATCTTCAAACTTTCT+GGG | 0.397628 | contig235end:-6420 | MsG0080048170.01.T01:CDS |
| TATGAATGACTTGGCTTGTA+AGG | 0.404544 | contig235end:-6438 | MsG0080048170.01.T01:CDS |
| TGGAATAAAGCTTGGAATAT+GGG | 0.416500 | contig235end:-7639 | MsG0080048170.01.T01:CDS |
| CTTCATTCTTAAAGTAAAGC+AGG | 0.436977 | contig235end:+8476 | MsG0080048170.01.T01:intergenic |
| GCTCATGGATTCCAAGGGTA+TGG | 0.447022 | contig235end:-6621 | MsG0080048170.01.T01:CDS |
| CCTAAAGCCGATTGAACACT+AGG | 0.454981 | contig235end:+6356 | MsG0080048170.01.T01:intergenic |
| CATTTAATTTCAATTTGACT+TGG | 0.459388 | contig235end:-6385 | MsG0080048170.01.T01:CDS |
| GTTAGAGCCTAGTGTTCAAT+CGG | 0.460269 | contig235end:-6363 | MsG0080048170.01.T01:CDS |
| ATGGATTTGGATGCTGAACT+AGG | 0.469976 | contig235end:-6173 | MsG0080048170.01.T01:CDS |
| TAGCTTTGGCCTTAGGGAAG+CGG | 0.483205 | contig235end:+6673 | MsG0080048170.01.T01:intergenic |
| GGTAGCTCAAGAGTTGGAAT+TGG | 0.485466 | contig235end:-6279 | MsG0080048170.01.T01:CDS |
| GGATAGCCGCCTAGGACAAA+AGG | 0.485898 | contig235end:+7528 | MsG0080048170.01.T01:intergenic |
| AGCAACGTTGCAATCACAAA+AGG | 0.487829 | contig235end:-7239 | MsG0080048170.01.T01:intron |
| CCAAAATGTAAGTGAGCTCA+TGG | 0.490013 | contig235end:-6636 | MsG0080048170.01.T01:CDS |
| ACTCTACATGGAATAAAGCT+TGG | 0.491560 | contig235end:-7647 | MsG0080048170.01.T01:CDS |
| AAGTCGCAAGTTTAGGGAAT+GGG | 0.503721 | contig235end:-6516 | MsG0080048170.01.T01:CDS |
| TTATTTCCTTAAGACAAGAA+AGG | 0.506188 | contig235end:-6468 | MsG0080048170.01.T01:CDS |
| TTGTCCTAGGCGGCTATCCA+TGG | 0.509014 | contig235end:-7524 | MsG0080048170.01.T01:intron |
| AGAAAAGCTAAAGGATAATG+TGG | 0.523643 | contig235end:-6300 | MsG0080048170.01.T01:CDS |
| TGCTGGCACTCAATAAGTGA+AGG | 0.542266 | contig235end:+6545 | MsG0080048170.01.T01:intergenic |
| AGATTCATGAACTTCCTTTG+TGG | 0.544219 | contig235end:-8505 | MsG0080048170.01.T01:CDS |
| CTAAGGCCAAAGCTAGAAGA+AGG | 0.558810 | contig235end:-6665 | MsG0080048170.01.T01:CDS |
| TAATGTGGTAGCTCAAGAGT+TGG | 0.559742 | contig235end:-6285 | MsG0080048170.01.T01:CDS |
| AAGTGAGCTCATGGATTCCA+AGG | 0.561824 | contig235end:-6627 | MsG0080048170.01.T01:CDS |
| CTCATGGATTCCAAGGGTAT+GGG | 0.563344 | contig235end:-6620 | MsG0080048170.01.T01:CDS |
| AAACATACTTCATCTAGTAA+TGG | 0.564644 | contig235end:+6575 | MsG0080048170.01.T01:intergenic |
| CATACCATGGATAGCCGCCT+AGG | 0.565038 | contig235end:+7520 | MsG0080048170.01.T01:intergenic |
| GCAAACTGCGAATATGTTTG+AGG | 0.565917 | contig235end:-7312 | MsG0080048170.01.T01:CDS |
| AAAAGTTTGAGAAATTTACA+TGG | 0.568464 | contig235end:-7596 | MsG0080048170.01.T01:CDS |
| GAATTTCTCTCGCTTGAACA+AGG | 0.568755 | contig235end:-7565 | MsG0080048170.01.T01:CDS |
| GAAGTCGCAAGTTTAGGGAA+TGG | 0.569896 | contig235end:-6517 | MsG0080048170.01.T01:CDS |
| GTAACTTAACCGCTTCCCTA+AGG | 0.570009 | contig235end:-6682 | MsG0080048170.01.T01:CDS |
| AGAAGTTTGAGAACTCTACA+TGG | 0.576561 | contig235end:-7659 | MsG0080048170.01.T01:CDS |
| TCTAAAGGTGGGAGGAACAC+AGG | 0.578325 | contig235end:-7367 | MsG0080048170.01.T01:intron |
| GCCGCCTAGGACAAAAGGCT+CGG | 0.579082 | contig235end:+7533 | MsG0080048170.01.T01:intergenic |
| AAAGGAGGTAGAAAAGCTAA+AGG | 0.580307 | contig235end:-6309 | MsG0080048170.01.T01:CDS |
| TTCATCTAGTAATGGAACAA+AGG | 0.580421 | contig235end:+6583 | MsG0080048170.01.T01:intergenic |
| AAAGCAGGTTATAGCCACAA+AGG | 0.585717 | contig235end:+8491 | MsG0080048170.01.T01:intergenic |
| CTGCGAATATGTTTGAGGGA+TGG | 0.586576 | contig235end:-7307 | MsG0080048170.01.T01:CDS |
| GAGAAACGACTAAATCAAGA+AGG | 0.587356 | contig235end:-6704 | MsG0080048170.01.T01:CDS |
| CTCAAGAGTTGGAATTGGAG+AGG | 0.595626 | contig235end:-6274 | MsG0080048170.01.T01:CDS |
| TGAGCTTCATGATCCTAACA+AGG | 0.607224 | contig235end:-6789 | MsG0080048170.01.T01:CDS |
| CAAACTGCGAATATGTTTGA+GGG | 0.611736 | contig235end:-7311 | MsG0080048170.01.T01:CDS |
| GGTGCGAGATATGAATGACT+TGG | 0.624462 | contig235end:-6447 | MsG0080048170.01.T01:CDS |
| TGCTGCAAGAGACTTGTTGG+AGG | 0.627839 | contig235end:-6213 | MsG0080048170.01.T01:CDS |
| GCTGGCACTCAATAAGTGAA+GGG | 0.632129 | contig235end:+6546 | MsG0080048170.01.T01:intergenic |
| AGCTTCATGATCCTAACAAG+GGG | 0.641496 | contig235end:-6787 | MsG0080048170.01.T01:CDS |
| CCAAAGCTAGAAGAAGGCCA+AGG | 0.642510 | contig235end:-6659 | MsG0080048170.01.T01:CDS |
| GAGCTTCATGATCCTAACAA+GGG | 0.645789 | contig235end:-6788 | MsG0080048170.01.T01:CDS |
| AGTGAGCTCATGGATTCCAA+GGG | 0.660252 | contig235end:-6626 | MsG0080048170.01.T01:CDS |
| TTTATCTGTCTAAAGGTGGG+AGG | 0.684955 | contig235end:-7375 | MsG0080048170.01.T01:intron |
| GGATCTTCAAACTTTCTGGG+AGG | 0.688818 | contig235end:-6417 | MsG0080048170.01.T01:CDS |
| GTATGTGTTTCGTAGCATCG+AGG | 0.754895 | contig235end:-8528 | MsG0080048170.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAAAAATATTTTTT+GGG | + | contig235end:6399-6418 | MsG0080048170.01.T01:intergenic | 0.0% |
| !!! | TTTTTTAAAAAAATATTTTT+TGG | + | contig235end:6400-6419 | MsG0080048170.01.T01:intergenic | 0.0% |
| !!! | TCTTTAATTTCATTATTATA+AGG | + | contig235end:7610-7629 | MsG0080048170.01.T01:intergenic | 10.0% |
| !!! | TTATTTTATAAAAGAAAAAG+AGG | + | contig235end:6447-6466 | MsG0080048170.01.T01:intergenic | 10.0% |
| !! | AATTTCATTATTATACTAAC+TGG | + | contig235end:7586-7605 | MsG0080048170.01.T01:intergenic | 15.0% |
| !! | ACTATATATATTTGTACATA+AGG | - | contig235end:6968-6987 | MsG0080048170.01.T01:intron | 15.0% |
| !!! | TACCAAATCTATTTTTTTAA+AGG | + | contig235end:6256-6275 | MsG0080048170.01.T01:intergenic | 15.0% |
| !!! | TACCTTTAAAAAAATAGATT+TGG | - | contig235end:6251-6270 | MsG0080048170.01.T01:CDS | 15.0% |
| !! | AAAAGTTTGAGAAATTTACA+TGG | - | contig235end:7087-7106 | MsG0080048170.01.T01:intron | 20.0% |
| !! | ATCTAATAAATTGTAACATG+TGG | + | contig235end:7209-7228 | MsG0080048170.01.T01:intergenic | 20.0% |
| !! | CAAGTCAAATTGAAATTAAA+TGG | + | contig235end:8300-8319 | MsG0080048170.01.T01:intergenic | 20.0% |
| !! | CATGTTACAATTTATTAGAT+CGG | - | contig235end:7209-7228 | MsG0080048170.01.T01:intron | 20.0% |
| !! | TTAAATAATTGTTTGTAGAG+AGG | + | contig235end:7483-7502 | MsG0080048170.01.T01:intergenic | 20.0% |
| !!! | AAGTTATTTTGAGAAACTAA+AGG | - | contig235end:8356-8375 | MsG0080048170.01.T01:intron | 20.0% |
| !!! | CATTTAATTTCAATTTGACT+TGG | - | contig235end:8298-8317 | MsG0080048170.01.T01:intron | 20.0% |
| !!! | TCATTTTTAAGTGTTTGTTT+AGG | + | contig235end:6549-6568 | MsG0080048170.01.T01:intergenic | 20.0% |
| !!! | TTTAAGAATGAAGAGATTTT+GGG | - | contig235end:6217-6236 | MsG0080048170.01.T01:CDS | 20.0% |
| ! | AAACATACTTCATCTAGTAA+TGG | + | contig235end:8111-8130 | MsG0080048170.01.T01:intergenic | 25.0% |
| ! | TTATTTCCTTAAGACAAGAA+AGG | - | contig235end:8215-8234 | MsG0080048170.01.T01:intron | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | + | contig235end:7179-7198 | MsG0080048170.01.T01:intergenic | 25.0% |
| ! | TTGAATTCATAGTTAGATTC+TGG | + | contig235end:7829-7848 | MsG0080048170.01.T01:intergenic | 25.0% |
| !! | AAAATACTCTTTTACACGTA+CGG | - | contig235end:7236-7255 | MsG0080048170.01.T01:intron | 25.0% |
| !!! | ACTCTAAAATGAAAACTGTT+AGG | + | contig235end:6488-6507 | MsG0080048170.01.T01:intergenic | 25.0% |
| !!! | ATTACCATTGACTGAAATTT+TGG | - | contig235end:7726-7745 | MsG0080048170.01.T01:CDS | 25.0% |
| !!! | CTTTAAGAATGAAGAGATTT+TGG | - | contig235end:6216-6235 | MsG0080048170.01.T01:CDS | 25.0% |
| !!! | GATATGATTTGGTTTTGTTT+AGG | - | contig235end:7281-7300 | MsG0080048170.01.T01:CDS | 25.0% |
| !!! | GTGTTTTGAATGATATGATT+TGG | - | contig235end:7270-7289 | MsG0080048170.01.T01:CDS | 25.0% |
| !!! | TTATTTTGAGAAACTAAAGG+AGG | - | contig235end:8359-8378 | MsG0080048170.01.T01:intron | 25.0% |
| ACAGCCTTCAAAAAATTGAT+AGG | + | contig235end:7351-7370 | MsG0080048170.01.T01:intergenic | 30.0% | |
| AGAAAAGCTAAAGGATAATG+TGG | - | contig235end:8383-8402 | MsG0080048170.01.T01:intron | 30.0% | |
| AGAACCAAAATTTCAGTCAA+TGG | + | contig235end:7733-7752 | MsG0080048170.01.T01:intergenic | 30.0% | |
| AGGATGATTTATCTGTCTAA+AGG | - | contig235end:7301-7320 | MsG0080048170.01.T01:CDS | 30.0% | |
| ATGATTTATCTGTCTAAAGG+TGG | - | contig235end:7304-7323 | MsG0080048170.01.T01:CDS | 30.0% | |
| ATGGAATAAAGCTTGGAATA+TGG | - | contig235end:7043-7062 | MsG0080048170.01.T01:intron | 30.0% | |
| CTAAACAAGCATATATATGC+TGG | + | contig235end:7677-7696 | MsG0080048170.01.T01:intergenic | 30.0% | |
| CTTCATTCTTAAAGTAAAGC+AGG | + | contig235end:6210-6229 | MsG0080048170.01.T01:intergenic | 30.0% | |
| GAATGCATATATAAACGTCA+TGG | + | contig235end:6922-6941 | MsG0080048170.01.T01:intergenic | 30.0% | |
| GTGAAAAATGCTATCATTGT+TGG | - | contig235end:7925-7944 | MsG0080048170.01.T01:intron | 30.0% | |
| TAAGGATCTTCAAACTTTCT+GGG | - | contig235end:8263-8282 | MsG0080048170.01.T01:intron | 30.0% | |
| TAATCAAGTACATAAACGCT+CGG | + | contig235end:6614-6633 | MsG0080048170.01.T01:intergenic | 30.0% | |
| TATTCTTATGTGTGACAAGT+AGG | - | contig235end:6861-6880 | MsG0080048170.01.T01:intron | 30.0% | |
| TGATTTATCTGTCTAAAGGT+GGG | - | contig235end:7305-7324 | MsG0080048170.01.T01:CDS | 30.0% | |
| TGGAATAAAGCTTGGAATAT+GGG | - | contig235end:7044-7063 | MsG0080048170.01.T01:intron | 30.0% | |
| ! | GGTTCTTAGTATTTTCATAG+AGG | - | contig235end:7747-7766 | MsG0080048170.01.T01:intron | 30.0% |
| ! | TTCATCTAGTAATGGAACAA+AGG | + | contig235end:8103-8122 | MsG0080048170.01.T01:intergenic | 30.0% |
| !! | AGATTTTGAAGAGATGGATT+TGG | - | contig235end:8497-8516 | MsG0080048170.01.T01:CDS | 30.0% |
| !! | GTACATAAGGCTTTGAATAT+GGG | - | contig235end:6981-7000 | MsG0080048170.01.T01:intron | 30.0% |
| !! | TGTACATAAGGCTTTGAATA+TGG | - | contig235end:6980-6999 | MsG0080048170.01.T01:intron | 30.0% |
| !!! | ACAGCCTATCAATTTTTTGA+AGG | - | contig235end:7344-7363 | MsG0080048170.01.T01:CDS | 30.0% |
| AAAGGAGGTAGAAAAGCTAA+AGG | - | contig235end:8374-8393 | MsG0080048170.01.T01:intron | 35.0% | |
| ACTCTACATGGAATAAAGCT+TGG | - | contig235end:7036-7055 | MsG0080048170.01.T01:intron | 35.0% | |
| AGAAAAGAAGTCGCAAGTTT+AGG | - | contig235end:8160-8179 | MsG0080048170.01.T01:intron | 35.0% | |
| AGAAGTTTGAGAACTCTACA+TGG | - | contig235end:7024-7043 | MsG0080048170.01.T01:intron | 35.0% | |
| AGATTCATGAACTTCCTTTG+TGG | - | contig235end:6178-6197 | MsG0080048170.01.T01:CDS | 35.0% | |
| CAAACTGCGAATATGTTTGA+GGG | - | contig235end:7372-7391 | MsG0080048170.01.T01:intron | 35.0% | |
| GAAAAGAAGTCGCAAGTTTA+GGG | - | contig235end:8161-8180 | MsG0080048170.01.T01:intron | 35.0% | |
| GAGAAACGACTAAATCAAGA+AGG | - | contig235end:7979-7998 | MsG0080048170.01.T01:intron | 35.0% | |
| GCATTCTGTTCTTACTTGAT+AGG | - | contig235end:6936-6955 | MsG0080048170.01.T01:intron | 35.0% | |
| GTAAGGATCTTCAAACTTTC+TGG | - | contig235end:8262-8281 | MsG0080048170.01.T01:intron | 35.0% | |
| TCTATATATACAGCCGAGTA+GGG | - | contig235end:6814-6833 | MsG0080048170.01.T01:CDS | 35.0% | |
| TTCACAATAAACCCCTTGTT+AGG | + | contig235end:7910-7929 | MsG0080048170.01.T01:intergenic | 35.0% | |
| ! | AATGCAAGTCAGTTTTTCTG+GGG | - | contig235end:7847-7866 | MsG0080048170.01.T01:intron | 35.0% |
| ! | CAATGCAAGTCAGTTTTTCT+GGG | - | contig235end:7846-7865 | MsG0080048170.01.T01:intron | 35.0% |
| ! | TCAATGCAAGTCAGTTTTTC+TGG | - | contig235end:7845-7864 | MsG0080048170.01.T01:intron | 35.0% |
| !! | TATGAATGACTTGGCTTGTA+AGG | - | contig235end:8245-8264 | MsG0080048170.01.T01:intron | 35.0% |
| AAAGCAGGTTATAGCCACAA+AGG | + | contig235end:6195-6214 | MsG0080048169.01.T01:intergenic | 40.0% | |
| AAGTCGCAAGTTTAGGGAAT+GGG | - | contig235end:8167-8186 | MsG0080048170.01.T01:intron | 40.0% | |
| AGAGAATGTGTGAGGGATAT+CGG | + | contig235end:6714-6733 | MsG0080048170.01.T01:intergenic | 40.0% | |
| AGCAACGTTGCAATCACAAA+AGG | - | contig235end:7444-7463 | MsG0080048170.01.T01:intron | 40.0% | |
| AGCTTCATGATCCTAACAAG+GGG | - | contig235end:7896-7915 | MsG0080048170.01.T01:intron | 40.0% | |
| ATGGATTTGGATGCTGAACT+AGG | - | contig235end:8510-8529 | MsG0080048170.01.T01:CDS | 40.0% | |
| CAGTAAGAGAGAATGTGTGA+GGG | + | contig235end:6721-6740 | MsG0080048170.01.T01:intergenic | 40.0% | |
| CCAAAATGTAAGTGAGCTCA+TGG | - | contig235end:8047-8066 | MsG0080048170.01.T01:intron | 40.0% | |
| CTCTATATATACAGCCGAGT+AGG | - | contig235end:6813-6832 | MsG0080048170.01.T01:CDS | 40.0% | |
| GAATTTCTCTCGCTTGAACA+AGG | - | contig235end:7118-7137 | MsG0080048170.01.T01:intron | 40.0% | |
| GAGCTTCATGATCCTAACAA+GGG | - | contig235end:7895-7914 | MsG0080048170.01.T01:intron | 40.0% | |
| GCAAACTGCGAATATGTTTG+AGG | - | contig235end:7371-7390 | MsG0080048170.01.T01:intron | 40.0% | |
| GTTAGAGCCTAGTGTTCAAT+CGG | - | contig235end:8320-8339 | MsG0080048170.01.T01:intron | 40.0% | |
| TAATGTGGTAGCTCAAGAGT+TGG | - | contig235end:8398-8417 | MsG0080048170.01.T01:intron | 40.0% | |
| TCTTATGTGTGACAAGTAGG+AGG | - | contig235end:6864-6883 | MsG0080048170.01.T01:intron | 40.0% | |
| TGAGCTTCATGATCCTAACA+AGG | - | contig235end:7894-7913 | MsG0080048170.01.T01:intron | 40.0% | |
| TTTATCTGTCTAAAGGTGGG+AGG | - | contig235end:7308-7327 | MsG0080048170.01.T01:CDS | 40.0% | |
| ! | CCATGAGCTCACTTACATTT+TGG | + | contig235end:8050-8069 | MsG0080048170.01.T01:intergenic | 40.0% |
| !! | GGCAGTAGATTTTGAAGAGA+TGG | - | contig235end:8491-8510 | MsG0080048170.01.T01:CDS | 40.0% |
| !! | TTCTTCTAGCTTTGGCCTTA+GGG | + | contig235end:8019-8038 | MsG0080048170.01.T01:intergenic | 40.0% |
| AAGTGAGCTCATGGATTCCA+AGG | - | contig235end:8056-8075 | MsG0080048170.01.T01:intron | 45.0% | |
| AGCATAAGAAGCAGCAGAAG+CGG | + | contig235end:6768-6787 | MsG0080048170.01.T01:intergenic | 45.0% | |
| AGTGAGCTCATGGATTCCAA+GGG | - | contig235end:8057-8076 | MsG0080048170.01.T01:intron | 45.0% | |
| CCAGTAAGAGAGAATGTGTG+AGG | + | contig235end:6722-6741 | MsG0080048170.01.T01:intergenic | 45.0% | |
| CCTAAAGCCGATTGAACACT+AGG | + | contig235end:8330-8349 | MsG0080048170.01.T01:intergenic | 45.0% | |
| CCTCACACATTCTCTCTTAC+TGG | - | contig235end:6719-6738 | MsG0080048170.01.T01:CDS | 45.0% | |
| CTAAGGCCAAAGCTAGAAGA+AGG | - | contig235end:8018-8037 | MsG0080048170.01.T01:intron | 45.0% | |
| CTCAAGAGTTGGAATTGGAG+AGG | - | contig235end:8409-8428 | MsG0080048170.01.T01:intron | 45.0% | |
| CTCGCACCTTTCTTGTCTTA+AGG | + | contig235end:8224-8243 | MsG0080048170.01.T01:intergenic | 45.0% | |
| CTGCGAATATGTTTGAGGGA+TGG | - | contig235end:7376-7395 | MsG0080048170.01.T01:intron | 45.0% | |
| GAAGTCGCAAGTTTAGGGAA+TGG | - | contig235end:8166-8185 | MsG0080048170.01.T01:intron | 45.0% | |
| GCTGGCACTCAATAAGTGAA+GGG | + | contig235end:8140-8159 | MsG0080048170.01.T01:intergenic | 45.0% | |
| GGATCTTCAAACTTTCTGGG+AGG | - | contig235end:8266-8285 | MsG0080048170.01.T01:intron | 45.0% | |
| GGTAGCTCAAGAGTTGGAAT+TGG | - | contig235end:8404-8423 | MsG0080048170.01.T01:intron | 45.0% | |
| GGTGCGAGATATGAATGACT+TGG | - | contig235end:8236-8255 | MsG0080048170.01.T01:intron | 45.0% | |
| GTAACTTAACCGCTTCCCTA+AGG | - | contig235end:8001-8020 | MsG0080048170.01.T01:intron | 45.0% | |
| TGATGCTGCAAGAGACTTGT+TGG | - | contig235end:8467-8486 | MsG0080048170.01.T01:CDS | 45.0% | |
| TGCTGGCACTCAATAAGTGA+AGG | + | contig235end:8141-8160 | MsG0080048170.01.T01:intergenic | 45.0% | |
| TTCTATGTGTCCCATACCCT+TGG | + | contig235end:8076-8095 | MsG0080048170.01.T01:intergenic | 45.0% | |
| ! | ACTTGCGACTTCTTTTCTGC+TGG | + | contig235end:8158-8177 | MsG0080048170.01.T01:intergenic | 45.0% |
| ! | CCTAGTGTTCAATCGGCTTT+AGG | - | contig235end:8327-8346 | MsG0080048170.01.T01:intron | 45.0% |
| ! | CTCATGGATTCCAAGGGTAT+GGG | - | contig235end:8063-8082 | MsG0080048170.01.T01:intron | 45.0% |
| !! | CTTCTTCTAGCTTTGGCCTT+AGG | + | contig235end:8020-8039 | MsG0080048170.01.T01:intergenic | 45.0% |
| !! | GCTCACTTACATTTTGGCCT+TGG | + | contig235end:8044-8063 | MsG0080048170.01.T01:intergenic | 45.0% |
| !! | ATATATATATATATATTTGA+AGG | - | contig235end:6354-6373 | MsG0080048170.01.T01:CDS | 5.0% |
| CCAAAGCTAGAAGAAGGCCA+AGG | - | contig235end:8024-8043 | MsG0080048170.01.T01:intron | 50.0% | |
| GAATGGGCGTTCACTGCTTT+GGG | - | contig235end:8183-8202 | MsG0080048170.01.T01:intron | 50.0% | |
| GCTCATGGATTCCAAGGGTA+TGG | - | contig235end:8062-8081 | MsG0080048170.01.T01:intron | 50.0% | |
| TATATACAGCCGAGTAGGGC+TGG | - | contig235end:6818-6837 | MsG0080048170.01.T01:CDS | 50.0% | |
| TCTAAAGGTGGGAGGAACAC+AGG | - | contig235end:7316-7335 | MsG0080048170.01.T01:CDS | 50.0% | |
| ! | TAAGTACTGCCAGCCCTACT+CGG | + | contig235end:6830-6849 | MsG0080048170.01.T01:intergenic | 50.0% |
| ! | TACTCCGAGCCTTTTGTCCT+AGG | - | contig235end:7146-7165 | MsG0080048170.01.T01:intron | 50.0% |
| !! | CCTTGGCCTTCTTCTAGCTT+TGG | + | contig235end:8027-8046 | MsG0080048170.01.T01:intergenic | 50.0% |
| !! | TAGCTTTGGCCTTAGGGAAG+CGG | + | contig235end:8013-8032 | MsG0080048170.01.T01:intergenic | 50.0% |
| !! | TGCTGCAAGAGACTTGTTGG+AGG | - | contig235end:8470-8489 | MsG0080048170.01.T01:CDS | 50.0% |
| CATACCATGGATAGCCGCCT+AGG | + | contig235end:7166-7185 | MsG0080048170.01.T01:intergenic | 55.0% | |
| GGAATGGGCGTTCACTGCTT+TGG | - | contig235end:8182-8201 | MsG0080048170.01.T01:intron | 55.0% | |
| GGATAGCCGCCTAGGACAAA+AGG | + | contig235end:7158-7177 | MsG0080048170.01.T01:intergenic | 55.0% | |
| TTGTCCTAGGCGGCTATCCA+TGG | - | contig235end:7159-7178 | MsG0080048170.01.T01:intron | 55.0% | |
| ! | TCCGAGCCTTTTGTCCTAGG+CGG | - | contig235end:7149-7168 | MsG0080048170.01.T01:intron | 55.0% |
| GCCGCCTAGGACAAAAGGCT+CGG | + | contig235end:7153-7172 | MsG0080048170.01.T01:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig235end | gene | 6157 | 8548 | 6157 | ID=MsG0080048170.01;Name=MsG0080048170.01 |
| contig235end | mRNA | 6157 | 8548 | 6157 | ID=MsG0080048170.01.T01;Parent=MsG0080048170.01;Name=MsG0080048170.01.T01;_AED=0.53;_eAED=0.53;_QI=0|0|0|0.75|1|1|4|0|388 |
| contig235end | exon | 8467 | 8548 | 8467 | ID=MsG0080048170.01.T01:exon:981;Parent=MsG0080048170.01.T01 |
| contig235end | exon | 7525 | 7747 | 7525 | ID=MsG0080048170.01.T01:exon:982;Parent=MsG0080048170.01.T01 |
| contig235end | exon | 7240 | 7382 | 7240 | ID=MsG0080048170.01.T01:exon:983;Parent=MsG0080048170.01.T01 |
| contig235end | exon | 6157 | 6875 | 6157 | ID=MsG0080048170.01.T01:exon:984;Parent=MsG0080048170.01.T01 |
| contig235end | CDS | 8467 | 8548 | 8467 | ID=MsG0080048170.01.T01:cds;Parent=MsG0080048170.01.T01 |
| contig235end | CDS | 7525 | 7747 | 7525 | ID=MsG0080048170.01.T01:cds;Parent=MsG0080048170.01.T01 |
| contig235end | CDS | 7240 | 7382 | 7240 | ID=MsG0080048170.01.T01:cds;Parent=MsG0080048170.01.T01 |
| contig235end | CDS | 6157 | 6875 | 6157 | ID=MsG0080048170.01.T01:cds;Parent=MsG0080048170.01.T01 |
| Gene Sequence |
| Protein sequence |
