Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041236.01.T01 | MCH80462.1 | 59.701 | 335 | 100 | 3 | 2 | 301 | 333 | 667 | 2.76E-121 | 373 |
| MsG0780041236.01.T01 | MCH80462.1 | 55.592 | 304 | 118 | 5 | 5 | 300 | 3 | 297 | 6.88E-102 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041236.01.T01 | Q9FPT1 | 42.308 | 130 | 73 | 2 | 13 | 142 | 56 | 183 | 1.04E-26 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041236.01.T01 | A0A2Z6LZ07 | 63.855 | 332 | 83 | 4 | 4 | 298 | 1 | 332 | 1.27e-135 | 398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041236.01.T01 | MTR_1g042160 | 49.346 | 306 | 103 | 4 | 12 | 301 | 12 | 281 | 3.79e-98 | 291 |
| MsG0780041236.01.T01 | MTR_7g107200 | 45.143 | 350 | 137 | 8 | 4 | 301 | 1 | 347 | 7.12e-90 | 273 |
| MsG0780041236.01.T01 | MTR_7g107160 | 46.032 | 315 | 137 | 9 | 2 | 300 | 116 | 413 | 3.58e-75 | 237 |
| MsG0780041236.01.T01 | MTR_7g107160 | 47.423 | 97 | 49 | 2 | 68 | 164 | 1 | 95 | 7.18e-20 | 89.7 |
| MsG0780041236.01.T01 | MTR_7g107170 | 67.692 | 130 | 36 | 2 | 178 | 301 | 107 | 236 | 8.97e-54 | 176 |
| MsG0780041236.01.T01 | MTR_7g107170 | 61.765 | 68 | 26 | 0 | 233 | 300 | 1 | 68 | 5.76e-19 | 85.1 |
| MsG0780041236.01.T01 | MTR_8g011730 | 32.716 | 324 | 177 | 8 | 11 | 296 | 12 | 332 | 2.69e-46 | 159 |
| MsG0780041236.01.T01 | MTR_3g079840 | 40.909 | 132 | 76 | 2 | 13 | 144 | 57 | 186 | 3.23e-29 | 117 |
| MsG0780041236.01.T01 | MTR_3g079840 | 40.909 | 132 | 76 | 2 | 13 | 144 | 56 | 185 | 3.39e-29 | 117 |
| MsG0780041236.01.T01 | MTR_5g091450 | 38.095 | 126 | 77 | 1 | 13 | 138 | 33 | 157 | 1.38e-28 | 115 |
| MsG0780041236.01.T01 | MTR_5g086700 | 39.130 | 138 | 82 | 2 | 7 | 144 | 55 | 190 | 2.48e-28 | 115 |
| MsG0780041236.01.T01 | MTR_5g086700 | 39.130 | 138 | 82 | 2 | 7 | 144 | 55 | 190 | 2.51e-28 | 115 |
| MsG0780041236.01.T01 | MTR_1g041240 | 36.232 | 138 | 85 | 3 | 7 | 144 | 51 | 185 | 1.81e-24 | 103 |
| MsG0780041236.01.T01 | MTR_1g041240 | 36.232 | 138 | 85 | 3 | 7 | 144 | 53 | 187 | 1.86e-24 | 103 |
| MsG0780041236.01.T01 | MTR_1g041240 | 36.232 | 138 | 85 | 3 | 7 | 144 | 52 | 186 | 1.90e-24 | 103 |
| MsG0780041236.01.T01 | MTR_5g091180 | 34.921 | 126 | 81 | 1 | 13 | 138 | 46 | 170 | 3.23e-21 | 94.4 |
| MsG0780041236.01.T01 | MTR_4g123750 | 34.783 | 138 | 82 | 3 | 14 | 143 | 20 | 157 | 7.85e-19 | 85.5 |
| MsG0780041236.01.T01 | MTR_5g091550 | 34.375 | 128 | 82 | 2 | 11 | 138 | 17 | 142 | 8.19e-19 | 86.7 |
| MsG0780041236.01.T01 | MTR_5g091550 | 34.375 | 128 | 82 | 2 | 11 | 138 | 17 | 142 | 8.96e-19 | 86.7 |
| MsG0780041236.01.T01 | MTR_2g034780 | 37.821 | 156 | 84 | 5 | 149 | 295 | 82 | 233 | 2.15e-17 | 80.9 |
| MsG0780041236.01.T01 | MTR_8g006190 | 35.246 | 122 | 74 | 2 | 25 | 141 | 4 | 125 | 5.13e-16 | 78.2 |
| MsG0780041236.01.T01 | MTR_1g073800 | 33.824 | 136 | 87 | 3 | 13 | 147 | 49 | 182 | 2.80e-15 | 76.3 |
| MsG0780041236.01.T01 | MTR_3g106700 | 28.105 | 153 | 99 | 3 | 2 | 144 | 395 | 546 | 2.62e-12 | 67.8 |
| MsG0780041236.01.T01 | MTR_1g044450 | 34.091 | 132 | 81 | 4 | 13 | 143 | 65 | 191 | 5.54e-12 | 66.6 |
| MsG0780041236.01.T01 | MTR_1g073790 | 32.576 | 132 | 83 | 4 | 13 | 143 | 62 | 188 | 4.42e-11 | 63.9 |
| MsG0780041236.01.T01 | MTR_8g006190 | 34.286 | 105 | 64 | 2 | 42 | 141 | 13 | 117 | 4.92e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041236.01.T01 | AT5G06600 | 42.308 | 130 | 73 | 2 | 13 | 142 | 56 | 183 | 1.07e-27 | 113 |
| MsG0780041236.01.T01 | AT5G06600 | 42.308 | 130 | 73 | 2 | 13 | 142 | 55 | 182 | 1.13e-27 | 113 |
| MsG0780041236.01.T01 | AT5G06600 | 42.308 | 130 | 73 | 2 | 13 | 142 | 56 | 183 | 1.19e-27 | 113 |
| MsG0780041236.01.T01 | AT3G11910 | 40.769 | 130 | 75 | 2 | 13 | 142 | 54 | 181 | 8.54e-27 | 110 |
| MsG0780041236.01.T01 | AT3G11910 | 40.769 | 130 | 75 | 2 | 13 | 142 | 54 | 181 | 8.54e-27 | 110 |
| MsG0780041236.01.T01 | AT3G11910 | 40.769 | 130 | 75 | 2 | 13 | 142 | 55 | 182 | 8.62e-27 | 110 |
| MsG0780041236.01.T01 | AT3G11910 | 40.769 | 130 | 75 | 2 | 13 | 142 | 55 | 182 | 8.62e-27 | 110 |
| MsG0780041236.01.T01 | AT3G58370 | 29.167 | 264 | 156 | 10 | 4 | 259 | 1 | 241 | 6.06e-20 | 88.2 |
| MsG0780041236.01.T01 | AT3G58210 | 30.208 | 192 | 113 | 4 | 13 | 203 | 8 | 179 | 4.02e-18 | 83.6 |
| MsG0780041236.01.T01 | AT3G58360 | 32.824 | 131 | 86 | 2 | 11 | 141 | 6 | 134 | 2.46e-17 | 80.9 |
| MsG0780041236.01.T01 | AT3G58410 | 34.615 | 130 | 80 | 2 | 12 | 141 | 7 | 131 | 3.53e-17 | 80.9 |
| MsG0780041236.01.T01 | AT3G44800 | 33.333 | 135 | 89 | 1 | 12 | 146 | 4 | 137 | 1.37e-16 | 79.3 |
| MsG0780041236.01.T01 | AT3G58270 | 30.822 | 146 | 99 | 2 | 13 | 158 | 8 | 151 | 8.82e-16 | 77.0 |
| MsG0780041236.01.T01 | AT3G58270 | 30.822 | 146 | 99 | 2 | 13 | 158 | 8 | 151 | 8.82e-16 | 77.0 |
| MsG0780041236.01.T01 | AT3G58270 | 30.822 | 146 | 99 | 2 | 13 | 158 | 8 | 151 | 8.82e-16 | 77.0 |
| MsG0780041236.01.T01 | AT3G58340 | 25.731 | 171 | 120 | 3 | 12 | 182 | 7 | 170 | 1.18e-15 | 76.6 |
| MsG0780041236.01.T01 | AT3G58340 | 30.000 | 130 | 89 | 2 | 12 | 141 | 7 | 134 | 1.21e-15 | 76.3 |
| MsG0780041236.01.T01 | AT3G58250 | 30.000 | 150 | 95 | 4 | 4 | 148 | 1 | 145 | 3.83e-15 | 75.1 |
| MsG0780041236.01.T01 | AT3G58350 | 27.737 | 137 | 96 | 2 | 12 | 146 | 7 | 142 | 5.41e-15 | 74.3 |
| MsG0780041236.01.T01 | AT3G58350 | 27.737 | 137 | 96 | 2 | 12 | 146 | 7 | 142 | 5.41e-15 | 74.3 |
| MsG0780041236.01.T01 | AT3G58440 | 35.036 | 137 | 83 | 4 | 12 | 147 | 9 | 140 | 8.56e-15 | 75.1 |
| MsG0780041236.01.T01 | AT3G58410 | 33.077 | 130 | 68 | 3 | 12 | 141 | 28 | 138 | 1.11e-14 | 73.9 |
| MsG0780041236.01.T01 | AT3G58220 | 28.873 | 142 | 97 | 3 | 14 | 152 | 13 | 153 | 1.86e-14 | 72.8 |
| MsG0780041236.01.T01 | AT3G17380 | 33.083 | 133 | 82 | 3 | 17 | 143 | 25 | 156 | 2.82e-14 | 72.4 |
| MsG0780041236.01.T01 | AT3G17380 | 33.846 | 130 | 82 | 3 | 13 | 140 | 175 | 302 | 3.48e-12 | 66.2 |
| MsG0780041236.01.T01 | AT3G27040 | 27.536 | 138 | 98 | 2 | 4 | 141 | 1 | 136 | 3.09e-14 | 71.6 |
| MsG0780041236.01.T01 | AT4G09770 | 29.412 | 119 | 78 | 2 | 31 | 146 | 31 | 146 | 5.34e-14 | 70.9 |
| MsG0780041236.01.T01 | AT4G09770 | 29.412 | 119 | 78 | 2 | 31 | 146 | 57 | 172 | 6.32e-14 | 70.9 |
| MsG0780041236.01.T01 | AT4G09770 | 29.412 | 119 | 78 | 2 | 31 | 146 | 31 | 146 | 7.06e-14 | 71.2 |
| MsG0780041236.01.T01 | AT4G09770 | 29.412 | 119 | 78 | 2 | 31 | 146 | 31 | 146 | 7.06e-14 | 71.2 |
| MsG0780041236.01.T01 | AT4G09770 | 29.412 | 119 | 78 | 2 | 31 | 146 | 57 | 172 | 7.36e-14 | 71.2 |
| MsG0780041236.01.T01 | AT3G58220 | 27.907 | 129 | 92 | 1 | 14 | 142 | 13 | 140 | 1.03e-13 | 70.1 |
| MsG0780041236.01.T01 | AT3G58220 | 27.907 | 129 | 92 | 1 | 14 | 142 | 13 | 140 | 1.65e-13 | 70.5 |
| MsG0780041236.01.T01 | AT2G32870 | 31.884 | 138 | 81 | 3 | 13 | 141 | 277 | 410 | 2.50e-13 | 70.5 |
| MsG0780041236.01.T01 | AT2G05420 | 30.247 | 162 | 101 | 5 | 7 | 159 | 3 | 161 | 3.52e-13 | 68.9 |
| MsG0780041236.01.T01 | AT3G44790 | 31.884 | 138 | 83 | 3 | 12 | 146 | 4 | 133 | 4.53e-13 | 68.9 |
| MsG0780041236.01.T01 | AT3G58220 | 27.907 | 129 | 92 | 1 | 14 | 142 | 13 | 140 | 4.56e-13 | 69.7 |
| MsG0780041236.01.T01 | AT3G58220 | 27.907 | 129 | 92 | 1 | 14 | 142 | 13 | 140 | 6.45e-13 | 68.9 |
| MsG0780041236.01.T01 | AT2G01790 | 30.827 | 133 | 89 | 2 | 16 | 146 | 11 | 142 | 7.24e-13 | 67.8 |
| MsG0780041236.01.T01 | AT3G58260 | 31.343 | 134 | 88 | 3 | 14 | 144 | 9 | 141 | 9.63e-13 | 68.2 |
| MsG0780041236.01.T01 | AT2G32880 | 32.867 | 143 | 80 | 5 | 10 | 141 | 175 | 312 | 1.84e-12 | 67.0 |
| MsG0780041236.01.T01 | AT5G43560 | 35.036 | 137 | 82 | 5 | 13 | 147 | 70 | 201 | 4.39e-12 | 67.0 |
| MsG0780041236.01.T01 | AT5G43560 | 35.036 | 137 | 82 | 5 | 13 | 147 | 70 | 201 | 4.39e-12 | 67.0 |
| MsG0780041236.01.T01 | AT1G31390 | 31.092 | 119 | 79 | 2 | 12 | 128 | 7 | 124 | 6.54e-12 | 65.1 |
| MsG0780041236.01.T01 | AT2G05410 | 30.657 | 137 | 86 | 4 | 14 | 146 | 9 | 140 | 7.95e-12 | 65.1 |
| MsG0780041236.01.T01 | AT3G58290 | 27.972 | 143 | 91 | 4 | 12 | 144 | 10 | 150 | 9.41e-12 | 64.7 |
| MsG0780041236.01.T01 | AT1G04300 | 35.252 | 139 | 79 | 6 | 13 | 147 | 69 | 200 | 1.73e-11 | 65.5 |
| MsG0780041236.01.T01 | AT2G25320 | 31.061 | 132 | 86 | 4 | 16 | 143 | 76 | 206 | 4.79e-11 | 63.9 |
| MsG0780041236.01.T01 | AT2G25320 | 31.061 | 132 | 86 | 4 | 16 | 143 | 76 | 206 | 4.98e-11 | 63.9 |
| MsG0780041236.01.T01 | AT2G25320 | 31.061 | 132 | 86 | 4 | 16 | 143 | 75 | 205 | 5.07e-11 | 63.9 |
| MsG0780041236.01.T01 | AT5G52330 | 32.374 | 139 | 83 | 6 | 13 | 147 | 20 | 151 | 5.64e-11 | 63.2 |
| MsG0780041236.01.T01 | AT5G52330 | 32.374 | 139 | 83 | 6 | 13 | 147 | 20 | 151 | 5.64e-11 | 63.2 |
| MsG0780041236.01.T01 | AT5G52330 | 32.374 | 139 | 83 | 6 | 13 | 147 | 20 | 151 | 5.64e-11 | 63.2 |
| MsG0780041236.01.T01 | AT1G31400 | 27.338 | 139 | 95 | 3 | 12 | 148 | 7 | 141 | 8.79e-11 | 62.0 |
Find 64 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTCAATTGAAGTGCTTA+TGG | 0.241179 | 7:-88608904 | MsG0780041236.01.T01:CDS |
| TTGAAATAGTTTCCAGATTT+GGG | 0.266501 | 7:+88608985 | None:intergenic |
| GTTGAAATAGTTTCCAGATT+TGG | 0.273996 | 7:+88608984 | None:intergenic |
| CCCCATGTTCAATTTGCTTT+AGG | 0.275944 | 7:-88608666 | MsG0780041236.01.T01:CDS |
| GGGCCTTGAACTCCAGGATT+TGG | 0.290827 | 7:+88609005 | None:intergenic |
| CGACTACTTATCAATTTACT+TGG | 0.300586 | 7:-88609624 | MsG0780041236.01.T01:CDS |
| GAACTCCAGGATTTGGCCTT+GGG | 0.314486 | 7:+88609012 | None:intergenic |
| TCTGTATCAGTATGTTTAAT+AGG | 0.321275 | 7:+88608936 | None:intergenic |
| ACCTTCTGTAATTGTCTTGT+TGG | 0.323188 | 7:+88609520 | None:intergenic |
| TGAACTCCAGGATTTGGCCT+TGG | 0.329525 | 7:+88609011 | None:intergenic |
| GATCTGGCTTTCTCCGCATT+GGG | 0.338647 | 7:-88608810 | MsG0780041236.01.T01:CDS |
| CTCCATCCCTCAGACATATT+AGG | 0.360448 | 7:+88609587 | None:intergenic |
| TGGAGTTCAAGGCCCAAATC+TGG | 0.378140 | 7:-88608997 | MsG0780041236.01.T01:CDS |
| AATTTAGATTTGATCTTACT+TGG | 0.378814 | 7:-88608695 | MsG0780041236.01.T01:CDS |
| ATCAGTATGTTTAATAGGTT+CGG | 0.394828 | 7:+88608941 | None:intergenic |
| GTGAAGGATGCTTGTATTGT+TGG | 0.396568 | 7:-88609145 | MsG0780041236.01.T01:CDS |
| AGATTTGGGCCTTGAACTCC+AGG | 0.410070 | 7:+88608999 | None:intergenic |
| GAACTACAGGAAGTAAGATT+TGG | 0.411260 | 7:-88608867 | MsG0780041236.01.T01:CDS |
| TATAGCAGAGATGGGAGAAA+TGG | 0.412203 | 7:-88609903 | None:intergenic |
| TGATCTGGCTTTCTCCGCAT+TGG | 0.415947 | 7:-88608811 | MsG0780041236.01.T01:CDS |
| AAAATTTGTCTGTATCCAAC+GGG | 0.443718 | 7:-88609659 | MsG0780041236.01.T01:CDS |
| GGATAGCCGCCTGCAACAAA+AGG | 0.446112 | 7:+88609797 | None:intergenic |
| AGGCCAAATCCTGGAGTTCA+AGG | 0.455231 | 7:-88609008 | MsG0780041236.01.T01:CDS |
| CCATGTAAATTTCTCAACAT+TGG | 0.459723 | 7:+88609868 | None:intergenic |
| CTACTTATCAATTTACTTGG+AGG | 0.462622 | 7:-88609621 | MsG0780041236.01.T01:CDS |
| ATCCATAAGCACTTCAATTG+AGG | 0.469428 | 7:+88608902 | None:intergenic |
| TAAAAGAGGGTTTGCTGTGA+AGG | 0.490005 | 7:-88609161 | MsG0780041236.01.T01:CDS |
| GAAGTCCCAAGGCCAAATCC+TGG | 0.490222 | 7:-88609017 | MsG0780041236.01.T01:CDS |
| AAATTGCGACTTCTCTTTGA+CGG | 0.494978 | 7:+88608837 | None:intergenic |
| TTTCAGCAGTGTAGAACTAC+AGG | 0.498012 | 7:-88608880 | MsG0780041236.01.T01:CDS |
| TCCATAAGCACTTCAATTGA+GGG | 0.498056 | 7:+88608903 | None:intergenic |
| AATTGCGACTTCTCTTTGAC+GGG | 0.499456 | 7:+88608838 | None:intergenic |
| CTTGAAGATCCTCACAAGCC+TGG | 0.504716 | 7:+88608739 | None:intergenic |
| TTGTTGCAGGCGGCTATCCA+TGG | 0.509193 | 7:-88609793 | MsG0780041236.01.T01:intron |
| AAGCTTCATCATCCTAAAAG+AGG | 0.516459 | 7:-88609175 | MsG0780041236.01.T01:CDS |
| GAAAATTTGTCTGTATCCAA+CGG | 0.522243 | 7:-88609660 | MsG0780041236.01.T01:CDS |
| TGTTGAGAAATTTACATGGA+AGG | 0.525784 | 7:-88609864 | MsG0780041236.01.T01:CDS |
| TGAAAAGCTGAAAGAGAATG+TGG | 0.531880 | 7:-88608610 | MsG0780041236.01.T01:CDS |
| CATGGATGACCAGGCTTGTG+AGG | 0.532003 | 7:-88608748 | MsG0780041236.01.T01:CDS |
| CCAATGTTGAGAAATTTACA+TGG | 0.532545 | 7:-88609868 | MsG0780041236.01.T01:CDS |
| TTCCTAAAGCAAATTGAACA+TGG | 0.538306 | 7:+88608664 | None:intergenic |
| GAATGTGGTAGCTCTTGAGC+TGG | 0.541953 | 7:-88608595 | MsG0780041236.01.T01:CDS |
| AAATCTGGAAACTATTTCAA+CGG | 0.552571 | 7:-88608982 | MsG0780041236.01.T01:CDS |
| AAGGCAAAATGCTGCTGCTG+AGG | 0.557732 | 7:-88608558 | None:intergenic |
| CTCCTAATATGTCTGAGGGA+TGG | 0.562239 | 7:-88609589 | MsG0780041236.01.T01:CDS |
| TCCTAAAGCAAATTGAACAT+GGG | 0.566420 | 7:+88608665 | None:intergenic |
| AATGCAAGTGGGAGTAGTTG+CGG | 0.567774 | 7:-88609223 | MsG0780041236.01.T01:CDS |
| GAAAACTCCTAATATGTCTG+AGG | 0.571235 | 7:-88609594 | MsG0780041236.01.T01:CDS |
| AGTGAAAGACATGGATGACC+AGG | 0.581108 | 7:-88608757 | MsG0780041236.01.T01:CDS |
| AGCTTCATCATCCTAAAAGA+GGG | 0.592122 | 7:-88609174 | MsG0780041236.01.T01:CDS |
| ATATTAAAGGGGAAGTCCCA+AGG | 0.606798 | 7:-88609028 | MsG0780041236.01.T01:intron |
| CCTAAAGCAAATTGAACATG+GGG | 0.611944 | 7:+88608666 | None:intergenic |
| ATCTGGCTTTCTCCGCATTG+GGG | 0.619168 | 7:-88608809 | MsG0780041236.01.T01:CDS |
| AAAACTCCTAATATGTCTGA+GGG | 0.631050 | 7:-88609593 | MsG0780041236.01.T01:CDS |
| GCTGGAAACAGAGAAGCTAA+AGG | 0.633198 | 7:-88608577 | MsG0780041236.01.T01:CDS |
| GATTGTGAGTTCAATGCAAG+TGG | 0.640240 | 7:-88609235 | MsG0780041236.01.T01:CDS |
| ACCAACAAGACAATTACAGA+AGG | 0.650806 | 7:-88609521 | MsG0780041236.01.T01:intron |
| GACTAGAAAAGTGAAAGACA+TGG | 0.661873 | 7:-88608766 | MsG0780041236.01.T01:CDS |
| AGGCTCAGAGTAAACCTCGT+CGG | 0.663038 | 7:+88609817 | None:intergenic |
| TTCTTGCTTGAAAACCGACG+AGG | 0.680918 | 7:-88609831 | MsG0780041236.01.T01:CDS |
| AATTTGTCTGTATCCAACGG+GGG | 0.722444 | 7:-88609657 | MsG0780041236.01.T01:CDS |
| ATAAAGAACTCTCCCCAATG+CGG | 0.724243 | 7:+88608797 | None:intergenic |
| ATTGTGAGTTCAATGCAAGT+GGG | 0.724920 | 7:-88609234 | MsG0780041236.01.T01:CDS |
| AAATTTGTCTGTATCCAACG+GGG | 0.752195 | 7:-88609658 | MsG0780041236.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAGATTTGATCTTACT+TGG | - | Chr7:88609758-88609777 | MsG0780041236.01.T01:intron | 20.0% |
| !! | TACGACAAGTTAAAATTTAT+TGG | - | Chr7:88608705-88608724 | MsG0780041236.01.T01:CDS | 20.0% |
| !!! | TACAGATTTTAGTACTTTAT+AGG | - | Chr7:88609082-88609101 | MsG0780041236.01.T01:intron | 20.0% |
| ! | AAATCTGGAAACTATTTCAA+CGG | - | Chr7:88609471-88609490 | MsG0780041236.01.T01:intron | 25.0% |
| ! | ATCAGTATGTTTAATAGGTT+CGG | + | Chr7:88609515-88609534 | None:intergenic | 25.0% |
| ! | GAATAAAAGTAACATCTCAA+TGG | + | Chr7:88609145-88609164 | None:intergenic | 25.0% |
| ! | TCTGTATCAGTATGTTTAAT+AGG | + | Chr7:88609520-88609539 | None:intergenic | 25.0% |
| ! | TTCATTCAAATATCATACCA+TGG | + | Chr7:88608680-88608699 | None:intergenic | 25.0% |
| ! | TTGAAATAGTTTCCAGATTT+GGG | + | Chr7:88609471-88609490 | None:intergenic | 25.0% |
| ! | TTGTAAACTTAACTGCTAAT+AGG | - | Chr7:88608977-88608996 | MsG0780041236.01.T01:CDS | 25.0% |
| AAAACTCCTAATATGTCTGA+GGG | - | Chr7:88608860-88608879 | MsG0780041236.01.T01:CDS | 30.0% | |
| AAAATTTGTCTGTATCCAAC+GGG | - | Chr7:88608794-88608813 | MsG0780041236.01.T01:CDS | 30.0% | |
| CAGTTAAGTTTACAATGAGA+AGG | + | Chr7:88608972-88608991 | None:intergenic | 30.0% | |
| CCAATGTTGAGAAATTTACA+TGG | - | Chr7:88608585-88608604 | MsG0780041236.01.T01:CDS | 30.0% | |
| CCATGTAAATTTCTCAACAT+TGG | + | Chr7:88608588-88608607 | None:intergenic | 30.0% | |
| CGACTACTTATCAATTTACT+TGG | - | Chr7:88608829-88608848 | MsG0780041236.01.T01:CDS | 30.0% | |
| CTACTTATCAATTTACTTGG+AGG | - | Chr7:88608832-88608851 | MsG0780041236.01.T01:CDS | 30.0% | |
| GAAAATTTGTCTGTATCCAA+CGG | - | Chr7:88608793-88608812 | MsG0780041236.01.T01:CDS | 30.0% | |
| GTTGAAATAGTTTCCAGATT+TGG | + | Chr7:88609472-88609491 | None:intergenic | 30.0% | |
| TCCTAAAGCAAATTGAACAT+GGG | + | Chr7:88609791-88609810 | None:intergenic | 30.0% | |
| TGTATGAATTTGCCAGATTT+CGG | - | Chr7:88609194-88609213 | MsG0780041236.01.T01:CDS | 30.0% | |
| TGTTGAGAAATTTACATGGA+AGG | - | Chr7:88608589-88608608 | MsG0780041236.01.T01:CDS | 30.0% | |
| TTCCTAAAGCAAATTGAACA+TGG | + | Chr7:88609792-88609811 | None:intergenic | 30.0% | |
| TTTAGGTATCCACTTGAAAA+AGG | + | Chr7:88609006-88609025 | None:intergenic | 30.0% | |
| ! | CAGAAATCTTGTGGATTTTT+AGG | + | Chr7:88609023-88609042 | None:intergenic | 30.0% |
| !! | AAGTCGCAATTTTAATGATC+TGG | - | Chr7:88609627-88609646 | MsG0780041236.01.T01:CDS | 30.0% |
| !! | ATATGCTATGGTTTTGCTTT+AGG | - | Chr7:88608771-88608790 | MsG0780041236.01.T01:CDS | 30.0% |
| !!! | TAGTGTGTTTTGATATGCTA+TGG | - | Chr7:88608759-88608778 | MsG0780041236.01.T01:CDS | 30.0% |
| AAATTGCGACTTCTCTTTGA+CGG | + | Chr7:88609619-88609638 | None:intergenic | 35.0% | |
| AAATTTGTCTGTATCCAACG+GGG | - | Chr7:88608795-88608814 | MsG0780041236.01.T01:CDS | 35.0% | |
| AAGCTTCATCATCCTAAAAG+AGG | - | Chr7:88609278-88609297 | MsG0780041236.01.T01:intron | 35.0% | |
| ACCAACAAGACAATTACAGA+AGG | - | Chr7:88608932-88608951 | MsG0780041236.01.T01:CDS | 35.0% | |
| ACCTTCTGTAATTGTCTTGT+TGG | + | Chr7:88608936-88608955 | None:intergenic | 35.0% | |
| AGCTTCATCATCCTAAAAGA+GGG | - | Chr7:88609279-88609298 | MsG0780041236.01.T01:intron | 35.0% | |
| AGTCCAACAAGCCATATTAA+AGG | - | Chr7:88609412-88609431 | MsG0780041236.01.T01:intron | 35.0% | |
| ATCCACAAGATTTCTGTCAA+TGG | - | Chr7:88609027-88609046 | MsG0780041236.01.T01:intron | 35.0% | |
| ATCCATAAGCACTTCAATTG+AGG | + | Chr7:88609554-88609573 | None:intergenic | 35.0% | |
| ATTGTGAGTTCAATGCAAGT+GGG | - | Chr7:88609219-88609238 | MsG0780041236.01.T01:CDS | 35.0% | |
| CAAGATTTCTGTCAATGGTA+TGG | - | Chr7:88609032-88609051 | MsG0780041236.01.T01:intron | 35.0% | |
| CCTAAAGCAAATTGAACATG+GGG | + | Chr7:88609790-88609809 | None:intergenic | 35.0% | |
| GAAAACTCCTAATATGTCTG+AGG | - | Chr7:88608859-88608878 | MsG0780041236.01.T01:CDS | 35.0% | |
| GAACTACAGGAAGTAAGATT+TGG | - | Chr7:88609586-88609605 | MsG0780041236.01.T01:CDS | 35.0% | |
| GACTAGAAAAGTGAAAGACA+TGG | - | Chr7:88609687-88609706 | MsG0780041236.01.T01:intron | 35.0% | |
| GTAACTGTTTCCCTAACATT+TGG | - | Chr7:88609388-88609407 | MsG0780041236.01.T01:intron | 35.0% | |
| GTCCAACAAGCCATATTAAA+GGG | - | Chr7:88609413-88609432 | MsG0780041236.01.T01:intron | 35.0% | |
| TACCATTGACAGAAATCTTG+TGG | + | Chr7:88609032-88609051 | None:intergenic | 35.0% | |
| TCCAACAAGCCATATTAAAG+GGG | - | Chr7:88609414-88609433 | MsG0780041236.01.T01:intron | 35.0% | |
| TCCATAAGCACTTCAATTGA+GGG | + | Chr7:88609553-88609572 | None:intergenic | 35.0% | |
| TGAAAAGCTGAAAGAGAATG+TGG | - | Chr7:88609843-88609862 | MsG0780041236.01.T01:CDS | 35.0% | |
| TGTTGGACTTCCAAATGTTA+GGG | + | Chr7:88609401-88609420 | None:intergenic | 35.0% | |
| TTGTTGGACTTCCAAATGTT+AGG | + | Chr7:88609402-88609421 | None:intergenic | 35.0% | |
| !! | GGATCTTCAAGTTTTATGGA+AGG | - | Chr7:88609726-88609745 | MsG0780041236.01.T01:intron | 35.0% |
| !! | GTGAGGATCTTCAAGTTTTA+TGG | - | Chr7:88609722-88609741 | MsG0780041236.01.T01:intron | 35.0% |
| !!! | AATAGGCTTCCTTTTTCAAG+TGG | - | Chr7:88608994-88609013 | MsG0780041236.01.T01:CDS | 35.0% |
| !!! | CTTTCACTTTTCTAGTCTTG+AGG | + | Chr7:88609684-88609703 | None:intergenic | 35.0% |
| AACTCACAATCACCGAAATC+TGG | + | Chr7:88609209-88609228 | None:intergenic | 40.0% | |
| AATTGCGACTTCTCTTTGAC+GGG | + | Chr7:88609618-88609637 | None:intergenic | 40.0% | |
| AATTTGTCTGTATCCAACGG+GGG | - | Chr7:88608796-88608815 | MsG0780041236.01.T01:CDS | 40.0% | |
| ATAAAGAACTCTCCCCAATG+CGG | + | Chr7:88609659-88609678 | None:intergenic | 40.0% | |
| ATATTAAAGGGGAAGTCCCA+AGG | - | Chr7:88609425-88609444 | MsG0780041236.01.T01:intron | 40.0% | |
| GATTGTGAGTTCAATGCAAG+TGG | - | Chr7:88609218-88609237 | MsG0780041236.01.T01:CDS | 40.0% | |
| GTGAAGGATGCTTGTATTGT+TGG | - | Chr7:88609308-88609327 | MsG0780041236.01.T01:intron | 40.0% | |
| TTGGGACTTCCCCTTTAATA+TGG | + | Chr7:88609426-88609445 | None:intergenic | 40.0% | |
| TTTCAGCAGTGTAGAACTAC+AGG | - | Chr7:88609573-88609592 | MsG0780041236.01.T01:CDS | 40.0% | |
| ! | ACCCTCAATTGAAGTGCTTA+TGG | - | Chr7:88609549-88609568 | MsG0780041236.01.T01:CDS | 40.0% |
| ! | CCCCATGTTCAATTTGCTTT+AGG | - | Chr7:88609787-88609806 | MsG0780041236.01.T01:intron | 40.0% |
| ! | TCCCCTTTAATATGGCTTGT+TGG | + | Chr7:88609418-88609437 | None:intergenic | 40.0% |
| ! | TTCACAGCAAACCCTCTTTT+AGG | + | Chr7:88609293-88609312 | None:intergenic | 40.0% |
| !! | TAAAAGAGGGTTTGCTGTGA+AGG | - | Chr7:88609292-88609311 | MsG0780041236.01.T01:intron | 40.0% |
| AATGCAAGTGGGAGTAGTTG+CGG | - | Chr7:88609230-88609249 | MsG0780041236.01.T01:CDS | 45.0% | |
| AGTGAAAGACATGGATGACC+AGG | - | Chr7:88609696-88609715 | MsG0780041236.01.T01:intron | 45.0% | |
| CTCCATCCCTCAGACATATT+AGG | + | Chr7:88608869-88608888 | None:intergenic | 45.0% | |
| CTCCTAATATGTCTGAGGGA+TGG | - | Chr7:88608864-88608883 | MsG0780041236.01.T01:CDS | 45.0% | |
| GCTGGAAACAGAGAAGCTAA+AGG | - | Chr7:88609876-88609895 | MsG0780041236.01.T01:CDS | 45.0% | |
| TTCTTGCTTGAAAACCGACG+AGG | - | Chr7:88608622-88608641 | MsG0780041236.01.T01:CDS | 45.0% | |
| ! | TACTCTGAGCCTTTTGTTGC+AGG | - | Chr7:88608647-88608666 | MsG0780041236.01.T01:CDS | 45.0% |
| AGATTTGGGCCTTGAACTCC+AGG | + | Chr7:88609457-88609476 | None:intergenic | 50.0% | |
| AGGCCAAATCCTGGAGTTCA+AGG | - | Chr7:88609445-88609464 | MsG0780041236.01.T01:intron | 50.0% | |
| AGGCTCAGAGTAAACCTCGT+CGG | + | Chr7:88608639-88608658 | None:intergenic | 50.0% | |
| CTTGAAGATCCTCACAAGCC+TGG | + | Chr7:88609717-88609736 | None:intergenic | 50.0% | |
| GAATGTGGTAGCTCTTGAGC+TGG | - | Chr7:88609858-88609877 | MsG0780041236.01.T01:CDS | 50.0% | |
| TGAACTCCAGGATTTGGCCT+TGG | + | Chr7:88609445-88609464 | None:intergenic | 50.0% | |
| TGGAGTTCAAGGCCCAAATC+TGG | - | Chr7:88609456-88609475 | MsG0780041236.01.T01:intron | 50.0% | |
| ! | GAACTCCAGGATTTGGCCTT+GGG | + | Chr7:88609444-88609463 | None:intergenic | 50.0% |
| ! | TCTGAGCCTTTTGTTGCAGG+CGG | - | Chr7:88608650-88608669 | MsG0780041236.01.T01:CDS | 50.0% |
| !! | ATCTGGCTTTCTCCGCATTG+GGG | - | Chr7:88609644-88609663 | MsG0780041236.01.T01:CDS | 50.0% |
| !! | GATCTGGCTTTCTCCGCATT+GGG | - | Chr7:88609643-88609662 | MsG0780041236.01.T01:CDS | 50.0% |
| !! | TGATCTGGCTTTCTCCGCAT+TGG | - | Chr7:88609642-88609661 | MsG0780041236.01.T01:CDS | 50.0% |
| CATGGATGACCAGGCTTGTG+AGG | - | Chr7:88609705-88609724 | MsG0780041236.01.T01:intron | 55.0% | |
| GAAGTCCCAAGGCCAAATCC+TGG | - | Chr7:88609436-88609455 | MsG0780041236.01.T01:intron | 55.0% | |
| GGATAGCCGCCTGCAACAAA+AGG | + | Chr7:88608659-88608678 | None:intergenic | 55.0% | |
| GGGCCTTGAACTCCAGGATT+TGG | + | Chr7:88609451-88609470 | None:intergenic | 55.0% | |
| TGTCTGTATCCAACGGGGGA+TGG | - | Chr7:88608800-88608819 | MsG0780041236.01.T01:CDS | 55.0% | |
| TTGTTGCAGGCGGCTATCCA+TGG | - | Chr7:88608660-88608679 | MsG0780041236.01.T01:CDS | 55.0% | |
| TCGTCTACTCCATCCCCCGT+TGG | + | Chr7:88608812-88608831 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 88608560 | 88609915 | 88608560 | ID=MsG0780041236.01;Name=MsG0780041236.01 |
| Chr7 | mRNA | 88608560 | 88609915 | 88608560 | ID=MsG0780041236.01.T01;Parent=MsG0780041236.01;Name=MsG0780041236.01.T01;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|1|1|4|0|301 |
| Chr7 | exon | 88609794 | 88609915 | 88609794 | ID=MsG0780041236.01.T01:exon:12161;Parent=MsG0780041236.01.T01 |
| Chr7 | exon | 88609522 | 88609682 | 88609522 | ID=MsG0780041236.01.T01:exon:12160;Parent=MsG0780041236.01.T01 |
| Chr7 | exon | 88609125 | 88609265 | 88609125 | ID=MsG0780041236.01.T01:exon:12159;Parent=MsG0780041236.01.T01 |
| Chr7 | exon | 88608560 | 88609041 | 88608560 | ID=MsG0780041236.01.T01:exon:12158;Parent=MsG0780041236.01.T01 |
| Chr7 | CDS | 88609794 | 88609915 | 88609794 | ID=MsG0780041236.01.T01:cds;Parent=MsG0780041236.01.T01 |
| Chr7 | CDS | 88609522 | 88609682 | 88609522 | ID=MsG0780041236.01.T01:cds;Parent=MsG0780041236.01.T01 |
| Chr7 | CDS | 88609125 | 88609265 | 88609125 | ID=MsG0780041236.01.T01:cds;Parent=MsG0780041236.01.T01 |
| Chr7 | CDS | 88608560 | 88609041 | 88608560 | ID=MsG0780041236.01.T01:cds;Parent=MsG0780041236.01.T01 |
| Gene Sequence |
| Protein sequence |
