AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048172.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048172.01.T01 MTR_7g107200 43.132 364 150 6 9 315 12 375 1.04e-92 280
MsG0080048172.01.T01 MTR_1g042160 47.447 333 131 8 1 314 1 308 1.66e-89 270
MsG0080048172.01.T01 MTR_7g107160 50.296 338 119 11 9 317 129 446 1.19e-87 270
MsG0080048172.01.T01 MTR_7g107160 50.388 129 44 3 52 160 1 129 3.50e-31 122
MsG0080048172.01.T01 MTR_8g011730 34.648 355 170 10 9 315 13 353 5.00e-54 180
MsG0080048172.01.T01 MTR_7g107170 53.416 161 67 1 154 314 111 263 1.17e-48 164
MsG0080048172.01.T01 MTR_7g107170 74.713 87 22 0 219 305 1 87 3.43e-33 123
MsG0080048172.01.T01 MTR_2g034780 38.012 171 99 3 140 309 97 261 1.28e-29 114
MsG0080048172.01.T01 MTR_3g079840 37.589 141 70 5 1 124 45 184 1.39e-19 90.1
MsG0080048172.01.T01 MTR_3g079840 37.589 141 70 5 1 124 44 183 1.40e-19 90.1
MsG0080048172.01.T01 MTR_5g086700 36.842 133 69 4 4 122 55 186 1.48e-18 87.0
MsG0080048172.01.T01 MTR_5g086700 36.842 133 69 4 4 122 55 186 1.58e-18 86.7
MsG0080048172.01.T01 MTR_1g041240 36.719 128 67 4 10 124 59 185 1.68e-17 84.0
MsG0080048172.01.T01 MTR_1g041240 36.719 128 67 4 10 124 58 184 1.76e-17 83.6
MsG0080048172.01.T01 MTR_1g041240 36.719 128 67 4 10 124 57 183 1.95e-17 83.6
MsG0080048172.01.T01 MTR_5g091450 32.000 125 71 3 10 120 33 157 8.30e-16 78.6
MsG0080048172.01.T01 MTR_5g091180 31.618 136 77 4 10 131 46 179 7.28e-14 72.8
MsG0080048172.01.T01 MTR_5g091550 32.031 128 68 4 9 120 18 142 7.23e-11 63.2
MsG0080048172.01.T01 MTR_5g091550 32.031 128 68 4 9 120 18 142 7.28e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048172.01.T01 AT5G06600 41.860 129 60 4 10 124 56 183 1.28e-19 90.1
MsG0080048172.01.T01 AT5G06600 41.860 129 60 4 10 124 55 182 1.30e-19 90.1
MsG0080048172.01.T01 AT5G06600 41.860 129 60 4 10 124 56 183 1.60e-19 89.7
MsG0080048172.01.T01 AT3G11910 39.535 129 63 4 10 124 54 181 1.69e-17 84.0
MsG0080048172.01.T01 AT3G11910 39.535 129 63 4 10 124 54 181 1.69e-17 84.0
MsG0080048172.01.T01 AT3G11910 39.535 129 63 4 10 124 55 182 1.69e-17 84.0
MsG0080048172.01.T01 AT3G11910 39.535 129 63 4 10 124 55 182 1.69e-17 84.0
MsG0080048172.01.T01 AT3G58340 24.825 286 157 9 8 255 6 271 2.11e-11 64.3
MsG0080048172.01.T01 AT2G25320 31.646 158 83 5 10 143 404 560 9.13e-11 63.5
MsG0080048172.01.T01 AT2G25320 31.646 158 83 5 10 143 405 561 9.21e-11 63.5

Find 58 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGGCCTTCTTCTATTTC+TGG 0.076592 contig235end:+18865 MsG0080048172.01.T01:intergenic
CAATGCAAGTAAGGATTATT+TGG 0.155785 contig235end:-19046 MsG0080048172.01.T01:CDS
TTTAGAAAAGAAAATTTATT+TGG 0.215804 contig235end:-18545 MsG0080048172.01.T01:CDS
CAAGTCAAATTGAAATTAAA+TGG 0.219404 contig235end:+18592 MsG0080048172.01.T01:intergenic
TTCACAATAAACCCTCTTTC+AGG 0.229550 contig235end:+18988 MsG0080048172.01.T01:intergenic
CCAAAGTCTCGACCACATTT+TGG 0.231606 contig235end:+18842 MsG0080048172.01.T01:intergenic
CTCTCACCTTTCTTGTCTTA+AGG 0.269117 contig235end:+18668 MsG0080048172.01.T01:intergenic
GAACTTCTCTCACTTGAATA+AGG 0.276609 contig235end:-20218 MsG0080048172.01.T01:CDS
GGATGATTTGTTTGTATCAA+TGG 0.314357 contig235end:-20062 MsG0080048172.01.T01:CDS
AGTAAGGATTATTTGGGTTT+CGG 0.339740 contig235end:-19039 MsG0080048172.01.T01:CDS
GGAATGGGCATTCACTGCTT+TGG 0.343437 contig235end:-18707 MsG0080048172.01.T01:CDS
TTCCTCTAGTAATGGAATAA+AGG 0.345498 contig235end:+18789 MsG0080048172.01.T01:intergenic
GTGAAGGATGCTTGTATTGT+TGG 0.355564 contig235end:-18970 MsG0080048172.01.T01:CDS
CCTTCTTCTATTTCTGGCTC+TGG 0.363990 contig235end:+18871 MsG0080048172.01.T01:intergenic
GAATGGGCATTCACTGCTTT+GGG 0.364582 contig235end:-18706 MsG0080048172.01.T01:CDS
CCAAAATGTGGTCGAGACTT+TGG 0.376541 contig235end:-18842 MsG0080048172.01.T01:CDS
AATGCAAGTAAGGATTATTT+GGG 0.389997 contig235end:-19045 MsG0080048172.01.T01:CDS
GATGATTTGTTTGTATCAAT+GGG 0.396301 contig235end:-20061 MsG0080048172.01.T01:CDS
TGATGCAGCAAGAGACTTGT+TGG 0.401616 contig235end:-18422 MsG0080048172.01.T01:CDS
CTTTGAGTTCAATGCAAGTA+AGG 0.409663 contig235end:-19055 MsG0080048172.01.T01:CDS
AACTCGCAGGTTTAGGGAAT+GGG 0.417770 contig235end:-18722 MsG0080048172.01.T01:CDS
GTACACTGCTAATATGTCTC+AGG 0.423152 contig235end:-19995 MsG0080048172.01.T01:CDS
GGTCGAGACTTTGGATTTCA+AGG 0.447344 contig235end:-18833 MsG0080048172.01.T01:CDS
GTTGAAGCAGTTAAGTTAGC+TGG 0.452845 contig235end:+18898 MsG0080048172.01.T01:intergenic
GGTAGCTCTAGAGTTGGAAT+TGG 0.453675 contig235end:-18485 MsG0080048172.01.T01:CDS
TCTCTCACTTGAATAAGGTT+AGG 0.456671 contig235end:-20213 MsG0080048172.01.T01:intron
CATTTAATTTCAATTTGACT+TGG 0.466420 contig235end:-18591 MsG0080048172.01.T01:CDS
GTTGGAATTGGAAAGGCTAA+TGG 0.469386 contig235end:-18473 MsG0080048172.01.T01:CDS
ATGGATTTGGATGCTGAACT+AGG 0.469976 contig235end:-18379 MsG0080048172.01.T01:CDS
AATTTATTTGGAGAAATTGA+AGG 0.492678 contig235end:-18533 MsG0080048172.01.T01:CDS
GAGCTTCTTGATCCTGAAAG+AGG 0.499293 contig235end:-19000 MsG0080048172.01.T01:CDS
AAACTCGCAGGTTTAGGGAA+TGG 0.505546 contig235end:-18723 MsG0080048172.01.T01:CDS
TTATTTCCTTAAGACAAGAA+AGG 0.506188 contig235end:-18674 MsG0080048172.01.T01:CDS
TTTGGAGAAATTGAAGGAGG+CGG 0.506949 contig235end:-18527 MsG0080048172.01.T01:CDS
GTCGAGACTTTGGATTTCAA+GGG 0.521430 contig235end:-18832 MsG0080048172.01.T01:CDS
ACCAGCAAGACACTTACAAA+AGG 0.526631 contig235end:-19922 MsG0080048172.01.T01:intron
AGCTTCTTGATCCTGAAAGA+GGG 0.537917 contig235end:-18999 MsG0080048172.01.T01:CDS
TCCTGACACAAAATAAGTGA+AGG 0.543719 contig235end:+18751 MsG0080048172.01.T01:intergenic
GAACATACTTCCTCTAGTAA+TGG 0.544728 contig235end:+18781 MsG0080048172.01.T01:intergenic
TGAAAGAGGGTTTATTGTGA+AGG 0.555016 contig235end:-18986 MsG0080048172.01.T01:CDS
TAATGTGGTAGCTCTAGAGT+TGG 0.557259 contig235end:-18491 MsG0080048172.01.T01:CDS
ATTGGAAAGGCTAATGGTAA+AGG 0.559107 contig235end:-18467 MsG0080048172.01.T01:CDS
CCAGAGCCAGAAATAGAAGA+AGG 0.562182 contig235end:-18871 MsG0080048172.01.T01:CDS
CTCTAGAGTTGGAATTGGAA+AGG 0.571519 contig235end:-18480 MsG0080048172.01.T01:CDS
TCTAAAGCAGATTGAACACA+AGG 0.573483 contig235end:+18562 MsG0080048172.01.T01:intergenic
ACTTTGGATTTCAAGGGTGT+AGG 0.575922 contig235end:-18826 MsG0080048172.01.T01:CDS
GGCCTTTATTCCATTACTAG+AGG 0.578841 contig235end:-18791 MsG0080048172.01.T01:CDS
TTATTTGGAGAAATTGAAGG+AGG 0.599804 contig235end:-18530 MsG0080048172.01.T01:CDS
CTGCTAATATGTCTCAGGGA+TGG 0.608102 contig235end:-19990 MsG0080048172.01.T01:CDS
CCTGACACAAAATAAGTGAA+GGG 0.611997 contig235end:+18752 MsG0080048172.01.T01:intergenic
TGATTTGTTTGTATCAATGG+GGG 0.614550 contig235end:-20059 MsG0080048172.01.T01:CDS
TGCAGCAAGAGACTTGTTGG+AGG 0.618326 contig235end:-18419 MsG0080048172.01.T01:CDS
ATGATTTGTTTGTATCAATG+GGG 0.633184 contig235end:-20060 MsG0080048172.01.T01:CDS
TGAGCGATGAGAAGTTCACA+TGG 0.645328 contig235end:-20249 MsG0080048172.01.T01:CDS
TACACTGCTAATATGTCTCA+GGG 0.650132 contig235end:-19994 MsG0080048172.01.T01:CDS
GGGTGTAGGACAAATAGAGA+AGG 0.651657 contig235end:-18812 MsG0080048172.01.T01:CDS
CTAACTTAACTGCTTCAACA+AGG 0.670044 contig235end:-18894 MsG0080048172.01.T01:CDS
AGAAGGCCAACACCAAAATG+TGG 0.670587 contig235end:-18854 MsG0080048172.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGTTATACTAATAA+TGG - contig235end:18995-19014 MsG0080048172.01.T01:CDS 10.0%
!! TTTAGAAAAGAAAATTTATT+TGG - contig235end:20083-20102 MsG0080048172.01.T01:intron 10.0%
!!! ATTATTAGTATAACTTTTTT+TGG + contig235end:18996-19015 MsG0080048172.01.T01:intergenic 10.0%
!! AATACAATAATAAGCAAAAA+TGG + contig235end:19227-19246 MsG0080048172.01.T01:intergenic 15.0%
!! ATCAAAATATTTACTATTTG+CGG - contig235end:18812-18831 MsG0080048172.01.T01:CDS 15.0%
!! TAAGAATCTTCAAAAAATTT+GGG - contig235end:20002-20021 MsG0080048172.01.T01:CDS 15.0%
!! TATTTGGTTAAAATAAGTTT+AGG + contig235end:18972-18991 MsG0080048172.01.T01:intergenic 15.0%
!!! ATTACTAACAAACAAAATTT+TGG + contig235end:19481-19500 MsG0080048172.01.T01:intergenic 15.0%
!!! TATAACTTTTTTTGGTTATT+TGG + contig235end:18988-19007 MsG0080048172.01.T01:intergenic 15.0%
!! AATTTATTTGGAGAAATTGA+AGG - contig235end:20095-20114 MsG0080048172.01.T01:intron 20.0%
!! CAAGTCAAATTGAAATTAAA+TGG + contig235end:20039-20058 MsG0080048172.01.T01:intergenic 20.0%
!! GTAAGAATCTTCAAAAAATT+TGG - contig235end:20001-20020 MsG0080048172.01.T01:CDS 20.0%
!! TCAAAATATTTACTATTTGC+GGG - contig235end:18813-18832 MsG0080048172.01.T01:CDS 20.0%
!! TTCTAACTCTTTCTAATATT+GGG + contig235end:19063-19082 MsG0080048172.01.T01:intergenic 20.0%
!! TTTCTAACTCTTTCTAATAT+TGG + contig235end:19064-19083 MsG0080048172.01.T01:intergenic 20.0%
!!! CATTTAATTTCAATTTGACT+TGG - contig235end:20037-20056 MsG0080048172.01.T01:CDS 20.0%
!!! CTAAGTTATTTTAGATTAGT+CGG - contig235end:18781-18800 MsG0080048172.01.T01:CDS 20.0%
!!! CTAATGTGATTTTTTTTGTT+GGG - contig235end:19360-19379 MsG0080048172.01.T01:intron 20.0%
! AATGCAAGTAAGGATTATTT+GGG - contig235end:19583-19602 MsG0080048172.01.T01:intron 25.0%
! ACATTAGGAGTTTAAAAAGT+CGG + contig235end:19347-19366 MsG0080048172.01.T01:intergenic 25.0%
! CCAACAAAAAAAATCACATT+AGG + contig235end:19362-19381 MsG0080048172.01.T01:intergenic 25.0%
! TGTTAGTAATTTCATAGAGT+TGG - contig235end:19491-19510 MsG0080048172.01.T01:intron 25.0%
! TTATTTCCTTAAGACAAGAA+AGG - contig235end:19954-19973 MsG0080048172.01.T01:CDS 25.0%
! TTCATTCAAATATCATACCA+TGG + contig235end:18479-18498 MsG0080048172.01.T01:intergenic 25.0%
! TTGAATATTAGAGTACAACT+AGG - contig235end:18758-18777 MsG0080048172.01.T01:CDS 25.0%
!! AGTTAGATTCTGGAAAATTT+AGG + contig235end:19555-19574 MsG0080048172.01.T01:intergenic 25.0%
!!! ATGATTTGTTTGTATCAATG+GGG - contig235end:18568-18587 MsG0080048172.01.T01:CDS 25.0%
!!! CCTAATGTGATTTTTTTTGT+TGG - contig235end:19359-19378 MsG0080048172.01.T01:intron 25.0%
!!! GATGATTTGTTTGTATCAAT+GGG - contig235end:18567-18586 MsG0080048172.01.T01:CDS 25.0%
AACAATAGTTTCGTATCATG+AGG + contig235end:18519-18538 MsG0080048172.01.T01:intergenic 30.0%
ACAATAGTTTCGTATCATGA+GGG + contig235end:18518-18537 MsG0080048172.01.T01:intergenic 30.0%
CAATGCAAGTAAGGATTATT+TGG - contig235end:19582-19601 MsG0080048172.01.T01:intron 30.0%
GAATCTTCAAAAAATTTGGG+AGG - contig235end:20005-20024 MsG0080048172.01.T01:CDS 30.0%
TAAACAAACAGCAAAAGAGA+CGG + contig235end:19443-19462 MsG0080048172.01.T01:intergenic 30.0%
TGTATTGTGTGTGAAATTTG+TGG - contig235end:19241-19260 MsG0080048172.01.T01:intron 30.0%
TTATTTGGAGAAATTGAAGG+AGG - contig235end:20098-20117 MsG0080048172.01.T01:intron 30.0%
TTGAACTCAAAGTTAGATTC+TGG + contig235end:19565-19584 MsG0080048172.01.T01:intergenic 30.0%
! AAAAAGTCGGAATTTAGAGT+TGG + contig235end:19334-19353 MsG0080048172.01.T01:intergenic 30.0%
! AGTAAGGATTATTTGGGTTT+CGG - contig235end:19589-19608 MsG0080048172.01.T01:intron 30.0%
! TTCCTCTAGTAATGGAATAA+AGG + contig235end:19842-19861 MsG0080048172.01.T01:intergenic 30.0%
!! AGATTTTGAAGAGATGGATT+TGG - contig235end:20236-20255 MsG0080048172.01.T01:CDS 30.0%
!! GGATGATTTGTTTGTATCAA+TGG - contig235end:18566-18585 MsG0080048172.01.T01:CDS 30.0%
!! TCAAGAAGTGTCAATTTAGT+TGG + contig235end:19530-19549 MsG0080048172.01.T01:intergenic 30.0%
!! TGATTTGTTTGTATCAATGG+GGG - contig235end:18569-18588 MsG0080048172.01.T01:CDS 30.0%
!!! TTGTGTTTTGACTTTGCTTT+AGG - contig235end:18545-18564 MsG0080048172.01.T01:CDS 30.0%
AGAAAAAAACTCGCAGGTTT+AGG - contig235end:19899-19918 MsG0080048172.01.T01:intron 35.0%
AGGTCAAAAATCAAGACTCA+GGG + contig235end:18936-18955 MsG0080048172.01.T01:intergenic 35.0%
ATTGGAAAGGCTAATGGTAA+AGG - contig235end:20161-20180 MsG0080048172.01.T01:intron 35.0%
CCTGACACAAAATAAGTGAA+GGG + contig235end:19879-19898 MsG0080048172.01.T01:intergenic 35.0%
CTAACTTAACTGCTTCAACA+AGG - contig235end:19734-19753 MsG0080048172.01.T01:intron 35.0%
CTCTTTAATCAGTGATCTAC+AGG - contig235end:18888-18907 MsG0080048172.01.T01:CDS 35.0%
GAAAAAAACTCGCAGGTTTA+GGG - contig235end:19900-19919 MsG0080048172.01.T01:intron 35.0%
GAACATACTTCCTCTAGTAA+TGG + contig235end:19850-19869 MsG0080048172.01.T01:intergenic 35.0%
GAACTTCTCTCACTTGAATA+AGG - contig235end:18410-18429 MsG0080048172.01.T01:CDS 35.0%
GGAAAAACTAAGGGATAATG+TGG - contig235end:20122-20141 MsG0080048172.01.T01:intron 35.0%
TACACTGCTAATATGTCTCA+GGG - contig235end:18634-18653 MsG0080048172.01.T01:CDS 35.0%
TAGGTCAAAAATCAAGACTC+AGG + contig235end:18937-18956 MsG0080048172.01.T01:intergenic 35.0%
TCCTGACACAAAATAAGTGA+AGG + contig235end:19880-19899 MsG0080048172.01.T01:intergenic 35.0%
TCTCTCACTTGAATAAGGTT+AGG - contig235end:18415-18434 MsG0080048172.01.T01:CDS 35.0%
TGAAAGAGGGTTTATTGTGA+AGG - contig235end:19642-19661 MsG0080048172.01.T01:intron 35.0%
TTCACAATAAACCCTCTTTC+AGG + contig235end:19643-19662 MsG0080048172.01.T01:intergenic 35.0%
! CTGTAGATCACTGATTAAAG+AGG + contig235end:18890-18909 MsG0080048172.01.T01:intergenic 35.0%
! CTTTGAGTTCAATGCAAGTA+AGG - contig235end:19573-19592 MsG0080048172.01.T01:intron 35.0%
! TCTAAAGCAGATTGAACACA+AGG + contig235end:20069-20088 MsG0080048172.01.T01:intergenic 35.0%
!! TAACTATACCTCTGAAGCAT+GGG - contig235end:19131-19150 MsG0080048172.01.T01:intron 35.0%
!! TTAACTATACCTCTGAAGCA+TGG - contig235end:19130-19149 MsG0080048172.01.T01:intron 35.0%
AAACAGCAAAAGAGACGGAT+TGG + contig235end:19438-19457 MsG0080048171.01.T01:intergenic 40.0%
AAACGGTGAAGTACATGTAC+CGG - contig235end:19159-19178 MsG0080048172.01.T01:intron 40.0%
ACCAGCAAGACACTTACAAA+AGG - contig235end:18706-18725 MsG0080048172.01.T01:CDS 40.0%
AGCTTCTTGATCCTGAAAGA+GGG - contig235end:19629-19648 MsG0080048172.01.T01:intron 40.0%
ATGGATTTGGATGCTGAACT+AGG - contig235end:20249-20268 MsG0080048172.01.T01:CDS 40.0%
CTCTCACCTTTCTTGTCTTA+AGG + contig235end:19963-19982 MsG0080048172.01.T01:intergenic 40.0%
GACTCAAACCCACGAAATTA+GGG + contig235end:18846-18865 MsG0080048172.01.T01:intergenic 40.0%
GGCCTTTATTCCATTACTAG+AGG - contig235end:19837-19856 MsG0080048172.01.T01:intron 40.0%
GTACACTGCTAATATGTCTC+AGG - contig235end:18633-18652 MsG0080048172.01.T01:CDS 40.0%
GTCGAGACTTTGGATTTCAA+GGG - contig235end:19796-19815 MsG0080048172.01.T01:intron 40.0%
GTGAAGGATGCTTGTATTGT+TGG - contig235end:19658-19677 MsG0080048172.01.T01:intron 40.0%
GTTCAAGTCCCTAATTTCGT+GGG - contig235end:18835-18854 MsG0080048172.01.T01:CDS 40.0%
GTTGAAGCAGTTAAGTTAGC+TGG + contig235end:19733-19752 MsG0080048172.01.T01:intergenic 40.0%
GTTGGAATTGGAAAGGCTAA+TGG - contig235end:20155-20174 MsG0080048172.01.T01:intron 40.0%
TTTGGAGAAATTGAAGGAGG+CGG - contig235end:20101-20120 MsG0080048172.01.T01:intron 40.0%
! ACCTTTTGTAAGTGTCTTGC+TGG + contig235end:18710-18729 MsG0080048172.01.T01:intergenic 40.0%
! ACTTTGGATTTCAAGGGTGT+AGG - contig235end:19802-19821 MsG0080048172.01.T01:intron 40.0%
! CTGAAGCATGGGTTGTAAAA+CGG - contig235end:19142-19161 MsG0080048172.01.T01:intron 40.0%
! GTTTAGGTTCAGAGTTCACT+AGG + contig235end:18956-18975 MsG0080048172.01.T01:intergenic 40.0%
! TTTTACAACCCATGCTTCAG+AGG + contig235end:19142-19161 MsG0080048172.01.T01:intergenic 40.0%
!! CTCTAGAGTTGGAATTGGAA+AGG - contig235end:20148-20167 MsG0080048172.01.T01:intron 40.0%
!! GGCAGAAGATTTTGAAGAGA+TGG - contig235end:20230-20249 MsG0080048172.01.T01:CDS 40.0%
!! TAATGTGGTAGCTCTAGAGT+TGG - contig235end:20137-20156 MsG0080048172.01.T01:intron 40.0%
!! TGTTGGCCTTCTTCTATTTC+TGG + contig235end:19766-19785 MsG0080048172.01.T01:intergenic 40.0%
!!! CCCTTCACTTATTTTGTGTC+AGG - contig235end:19876-19895 MsG0080048172.01.T01:intron 40.0%
AAACTCGCAGGTTTAGGGAA+TGG - contig235end:19905-19924 MsG0080048172.01.T01:intron 45.0%
AACGGTGAAGTACATGTACC+GGG - contig235end:19160-19179 MsG0080048172.01.T01:intron 45.0%
AACTCGCAGGTTTAGGGAAT+GGG - contig235end:19906-19925 MsG0080048172.01.T01:intron 45.0%
AGAAGGCCAACACCAAAATG+TGG - contig235end:19774-19793 MsG0080048172.01.T01:intron 45.0%
CCAAAATGTGGTCGAGACTT+TGG - contig235end:19786-19805 MsG0080048172.01.T01:intron 45.0%
CCAGAGCCAGAAATAGAAGA+AGG - contig235end:19757-19776 MsG0080048172.01.T01:intron 45.0%
CTGCTAATATGTCTCAGGGA+TGG - contig235end:18638-18657 MsG0080048172.01.T01:CDS 45.0%
GAAGGAGGCGGAAAAACTAA+GGG - contig235end:20113-20132 MsG0080048172.01.T01:intron 45.0%
GAATGGGCATTCACTGCTTT+GGG - contig235end:19922-19941 MsG0080048172.01.T01:intron 45.0%
GAGCTTCTTGATCCTGAAAG+AGG - contig235end:19628-19647 MsG0080048172.01.T01:intron 45.0%
GGACTCAAACCCACGAAATT+AGG + contig235end:18847-18866 MsG0080048172.01.T01:intergenic 45.0%
GGGTGTAGGACAAATAGAGA+AGG - contig235end:19816-19835 MsG0080048172.01.T01:intron 45.0%
GGTCGAGACTTTGGATTTCA+AGG - contig235end:19795-19814 MsG0080048172.01.T01:intron 45.0%
GGTCTTCTTCACCATGACAA+CGG + contig235end:18869-18888 MsG0080048172.01.T01:intergenic 45.0%
GGTTCAAGTCCCTAATTTCG+TGG - contig235end:18834-18853 MsG0080048172.01.T01:CDS 45.0%
GTCAGGAGAAAAAAACTCGC+AGG - contig235end:19893-19912 MsG0080048172.01.T01:intron 45.0%
GTCTTCTTCACCATGACAAC+GGG + contig235end:18868-18887 MsG0080048172.01.T01:intergenic 45.0%
TACAGTACACGTACCCAGTA+CGG + contig235end:19193-19212 MsG0080048172.01.T01:intergenic 45.0%
TGAAGGAGGCGGAAAAACTA+AGG - contig235end:20112-20131 MsG0080048172.01.T01:intron 45.0%
TGAGCGATGAGAAGTTCACA+TGG - contig235end:18379-18398 MsG0080048172.01.T01:CDS 45.0%
TGATGCAGCAAGAGACTTGT+TGG - contig235end:20206-20225 MsG0080048172.01.T01:intron 45.0%
TGTTTGTATCAATGGGGGAC+AGG - contig235end:18574-18593 MsG0080048172.01.T01:CDS 45.0%
! CCAAAGTCTCGACCACATTT+TGG + contig235end:19789-19808 MsG0080048172.01.T01:intergenic 45.0%
!! CCTTCTTCTATTTCTGGCTC+TGG + contig235end:19760-19779 MsG0080048172.01.T01:intergenic 45.0%
!! GGTAGCTCTAGAGTTGGAAT+TGG - contig235end:20143-20162 MsG0080048172.01.T01:intron 45.0%
!! TCTCGACCACATTTTGGTGT+TGG + contig235end:19783-19802 MsG0080048172.01.T01:intergenic 45.0%
ACAGTACACGTACCCAGTAC+GGG + contig235end:19192-19211 MsG0080048172.01.T01:intergenic 50.0%
ATACCATGGATAGCCGCCAA+GGG + contig235end:18465-18484 MsG0080048172.01.T01:intergenic 50.0%
GGAATGGGCATTCACTGCTT+TGG - contig235end:19921-19940 MsG0080048172.01.T01:intron 50.0%
GGGTACGTGTACTGTACTTG+TGG - contig235end:19197-19216 MsG0080048172.01.T01:intron 50.0%
TACTCTGAGCCTTTCACCCT+TGG - contig235end:18446-18465 MsG0080048172.01.T01:CDS 50.0%
!! TGCAGCAAGAGACTTGTTGG+AGG - contig235end:20209-20228 MsG0080048172.01.T01:intron 50.0%
CATACCATGGATAGCCGCCA+AGG + contig235end:18466-18485 MsG0080048172.01.T01:intergenic 55.0%
GGGTTTGAGTCCCGTTGTCA+TGG - contig235end:18855-18874 MsG0080048172.01.T01:CDS 55.0%
TCTGAGCCTTTCACCCTTGG+CGG - contig235end:18449-18468 MsG0080048172.01.T01:CDS 55.0%
ACCCAGTACGGGTGTGTACC+CGG + contig235end:19181-19200 MsG0080048172.01.T01:intergenic 60.0%
ACCGGGTACACACCCGTACT+GGG - contig235end:19177-19196 MsG0080048172.01.T01:intron 60.0%
GGATAGCCGCCAAGGGTGAA+AGG + contig235end:18458-18477 MsG0080048172.01.T01:intergenic 60.0%
TACCGGGTACACACCCGTAC+TGG - contig235end:19176-19195 MsG0080048172.01.T01:intron 60.0%
TCACCCTTGGCGGCTATCCA+TGG - contig235end:18459-18478 MsG0080048172.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
contig235end gene 18363 20287 18363 ID=MsG0080048172.01;Name=MsG0080048172.01
contig235end mRNA 18363 20287 18363 ID=MsG0080048172.01.T01;Parent=MsG0080048172.01;Name=MsG0080048172.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|1|1|3|0|318
contig235end exon 20214 20287 20214 ID=MsG0080048172.01.T01:exon:975;Parent=MsG0080048172.01.T01
contig235end exon 19923 20083 19923 ID=MsG0080048172.01.T01:exon:976;Parent=MsG0080048172.01.T01
contig235end exon 18363 19084 18363 ID=MsG0080048172.01.T01:exon:977;Parent=MsG0080048172.01.T01
contig235end CDS 20214 20287 20214 ID=MsG0080048172.01.T01:cds;Parent=MsG0080048172.01.T01
contig235end CDS 19923 20083 19923 ID=MsG0080048172.01.T01:cds;Parent=MsG0080048172.01.T01
contig235end CDS 18363 19084 18363 ID=MsG0080048172.01.T01:cds;Parent=MsG0080048172.01.T01
Gene Sequence

>MsG0080048172.01.T01

ATGGAGAGTCAAGAATTGAGCGATGAGAAGTTCACATGGAAGATTGAGAACTTCTCTCACTTGAATAAGGTTAGGATGATTTGTTTGTATCAATGGGGGACAGGAGTAGACGATTACTTATCGATTTATTTGTATGATGTGTACACTGCTAATATGTCTCAGGGATGGAGCAGAGATGTCAAACTTAAGTTGCTTGTATTCAATCAAGTTGATACCAGCAAGACACTTACAAAAGAATCTAACTTTGAGTTCAATGCAAGTAAGGATTATTTGGGTTTCGGATTCATGACGTTATCTGAGCTTCTTGATCCTGAAAGAGGGTTTATTGTGAAGGATGCTTGTATTGTTGGTGTTGAAGTTTATGTTTGTAAATCAACACATGAGAAAGCAATCATTCAACCAGCTAACTTAACTGCTTCAACAAGGCCAGAGCCAGAAATAGAAGAAGGCCAACACCAAAATGTGGTCGAGACTTTGGATTTCAAGGGTGTAGGACAAATAGAGAAGGCCTTTATTCCATTACTAGAGGAAGTATGTTCTCAACACCCTTCACTTATTTTGTGTCAGGAGAAAAAAACTCGCAGGTTTAGGGAATGGGCATTCACTGCTTTGGGCAGAGTTCTTTATTTCCTTAAGACAAGAAAGGTGAGAGATATGAATGACTTAGCTTGTAAGAATCTTCAAAAAATTTGGGAGGAACTTCAACCATTTAATTTCAATTTGACTTGGTTAGAGCCTTGTGTTCAATCTGCTTTAGAAAAGAAAATTTATTTGGAGAAATTGAAGGAGGCGGAAAAACTAAGGGATAATGTGGTAGCTCTAGAGTTGGAATTGGAAAGGCTAATGGTAAAGGCTGCTACTGTAGAGATAAATCTTGATGCAGCAAGAGACTTGTTGGAGGCAGAAGATTTTGAAGAGATGGATTTGGATGCTGAACTAGGATTTATGAAAACATAA
Protein sequence

>MsG0080048172.01.T01

MESQELSDEKFTWKIENFSHLNKVRMICLYQWGTGVDDYLSIYLYDVYTANMSQGWSRDVKLKLLVFNQVDTSKTLTKESNFEFNASKDYLGFGFMTLSELLDPERGFIVKDACIVGVEVYVCKSTHEKAIIQPANLTASTRPEPEIEEGQHQNVVETLDFKGVGQIEKAFIPLLEEVCSQHPSLILCQEKKTRRFREWAFTALGRVLYFLKTRKVRDMNDLACKNLQKIWEELQPFNFNLTWLEPCVQSALEKKIYLEKLKEAEKLRDNVVALELELERLMVKAATVEINLDAARDLLEAEDFEEMDLDAELGFMKT*