AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041235.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041235.01.T01 MTR_1g042160 55.460 348 114 4 43 389 1 308 2.61e-131 379
MsG0780041235.01.T01 MTR_7g107200 50.000 376 161 6 43 391 1 376 2.50e-123 362
MsG0780041235.01.T01 MTR_7g107160 45.902 366 145 10 40 389 115 443 4.80e-87 271
MsG0780041235.01.T01 MTR_7g107160 60.952 105 41 0 110 214 1 105 6.48e-36 137
MsG0780041235.01.T01 MTR_7g107170 72.840 162 42 1 235 394 107 268 1.39e-78 243
MsG0780041235.01.T01 MTR_7g107170 60.920 87 34 0 294 380 1 87 2.50e-25 104
MsG0780041235.01.T01 MTR_8g011730 36.438 365 186 11 53 392 12 355 1.62e-64 210
MsG0780041235.01.T01 MTR_3g079840 45.070 142 77 1 43 184 44 184 3.53e-38 147
MsG0780041235.01.T01 MTR_3g079840 45.070 142 77 1 43 184 45 185 3.56e-38 147
MsG0780041235.01.T01 MTR_5g091450 46.154 130 69 1 55 184 33 161 1.74e-37 144
MsG0780041235.01.T01 MTR_5g086700 46.154 130 69 1 55 184 61 189 1.71e-36 142
MsG0780041235.01.T01 MTR_5g086700 46.154 130 69 1 55 184 61 189 1.78e-36 142
MsG0780041235.01.T01 MTR_1g041240 44.853 136 73 2 48 183 52 185 3.63e-35 138
MsG0780041235.01.T01 MTR_1g041240 44.853 136 73 2 48 183 51 184 3.84e-35 138
MsG0780041235.01.T01 MTR_1g041240 44.853 136 73 2 48 183 50 183 3.95e-35 137
MsG0780041235.01.T01 MTR_5g091180 36.957 138 87 0 43 180 34 171 7.12e-26 110
MsG0780041235.01.T01 MTR_5g091550 38.583 127 77 1 54 180 18 143 4.55e-24 103
MsG0780041235.01.T01 MTR_5g091550 38.583 127 77 1 54 180 18 143 5.84e-24 103
MsG0780041235.01.T01 MTR_1g044450 35.075 134 82 3 51 183 61 190 7.24e-19 89.4
MsG0780041235.01.T01 MTR_4g123750 32.168 143 88 4 56 189 20 162 5.02e-18 84.3
MsG0780041235.01.T01 MTR_4g123750 29.286 140 96 2 48 185 169 307 5.55e-12 66.6
MsG0780041235.01.T01 MTR_1g073790 33.582 134 84 3 51 183 58 187 1.17e-17 85.9
MsG0780041235.01.T01 MTR_1g073800 30.769 143 96 3 42 183 36 176 1.55e-17 84.3
MsG0780041235.01.T01 MTR_3g106700 33.333 141 84 2 55 185 406 546 3.15e-17 84.3
MsG0780041235.01.T01 MTR_3g106700 26.190 126 89 3 58 179 71 196 9.89e-11 64.3
MsG0780041235.01.T01 MTR_2g034780 38.583 127 73 2 244 368 122 245 4.80e-17 80.9
MsG0780041235.01.T01 MTR_8g006190 36.522 115 67 3 73 181 10 124 9.88e-16 79.0
MsG0780041235.01.T01 MTR_8g006190 34.821 112 65 4 84 189 13 122 1.28e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041235.01.T01 AT5G06600 50.000 142 70 1 43 184 44 184 2.83e-40 153
MsG0780041235.01.T01 AT5G06600 50.000 142 70 1 43 184 44 184 4.02e-40 152
MsG0780041235.01.T01 AT5G06600 50.000 142 70 1 43 184 43 183 4.06e-40 152
MsG0780041235.01.T01 AT3G11910 50.769 130 63 1 55 184 55 183 2.35e-38 147
MsG0780041235.01.T01 AT3G11910 50.769 130 63 1 55 184 55 183 2.35e-38 147
MsG0780041235.01.T01 AT3G11910 50.769 130 63 1 55 184 54 182 2.39e-38 147
MsG0780041235.01.T01 AT3G11910 50.769 130 63 1 55 184 54 182 2.39e-38 147
MsG0780041235.01.T01 AT3G58270 40.146 137 81 1 48 184 1 136 5.80e-26 107
MsG0780041235.01.T01 AT3G58270 40.146 137 81 1 48 184 1 136 5.80e-26 107
MsG0780041235.01.T01 AT3G58270 40.146 137 81 1 48 184 1 136 5.80e-26 107
MsG0780041235.01.T01 AT3G58250 32.749 171 109 3 54 218 9 179 6.78e-24 101
MsG0780041235.01.T01 AT3G58340 25.449 334 212 8 48 363 1 315 7.24e-24 101
MsG0780041235.01.T01 AT3G58370 35.811 148 93 1 50 195 4 151 1.59e-23 100
MsG0780041235.01.T01 AT3G58340 34.307 137 89 1 48 184 1 136 9.31e-23 98.2
MsG0780041235.01.T01 AT3G58410 35.075 134 83 2 48 181 1 130 1.26e-21 95.1
MsG0780041235.01.T01 AT3G58360 32.432 148 99 1 48 195 1 147 1.59e-21 94.4
MsG0780041235.01.T01 AT3G58210 30.723 166 114 1 48 212 1 166 2.44e-21 94.4
MsG0780041235.01.T01 AT3G27040 31.429 140 96 0 54 193 8 147 1.21e-19 88.6
MsG0780041235.01.T01 AT3G58260 34.043 141 90 2 48 185 1 141 1.25e-19 89.4
MsG0780041235.01.T01 AT3G58350 30.882 136 92 1 48 181 1 136 2.53e-19 88.2
MsG0780041235.01.T01 AT3G58350 30.882 136 92 1 48 181 1 136 2.53e-19 88.2
MsG0780041235.01.T01 AT3G44800 32.168 143 97 0 53 195 3 145 2.11e-18 85.9
MsG0780041235.01.T01 AT3G58200 33.058 121 81 0 48 168 1 121 4.65e-18 84.7
MsG0780041235.01.T01 AT5G52330 33.333 135 86 2 41 175 6 136 7.29e-18 85.1
MsG0780041235.01.T01 AT5G52330 33.333 135 86 2 41 175 6 136 7.29e-18 85.1
MsG0780041235.01.T01 AT5G52330 33.333 135 86 2 41 175 6 136 7.29e-18 85.1
MsG0780041235.01.T01 AT2G05420 31.973 147 92 2 56 195 10 155 1.87e-17 82.8
MsG0780041235.01.T01 AT5G43560 35.075 134 82 3 51 183 66 195 3.14e-17 84.3
MsG0780041235.01.T01 AT5G43560 35.075 134 82 3 51 183 66 195 3.14e-17 84.3
MsG0780041235.01.T01 AT3G58410 32.895 152 78 3 34 179 2 135 3.41e-17 82.4
MsG0780041235.01.T01 AT2G05410 30.872 149 101 2 48 195 1 148 4.89e-17 81.6
MsG0780041235.01.T01 AT1G31390 33.871 124 80 1 48 169 1 124 9.28e-17 80.1
MsG0780041235.01.T01 AT3G58220 26.286 175 121 4 56 226 13 183 6.14e-16 78.6
MsG0780041235.01.T01 AT3G44790 34.848 132 82 1 53 184 3 130 7.07e-16 78.6
MsG0780041235.01.T01 AT1G31400 28.947 152 103 2 48 197 1 149 7.22e-16 77.8
MsG0780041235.01.T01 AT3G58290 29.932 147 92 3 54 190 10 155 8.29e-16 77.8
MsG0780041235.01.T01 AT1G04300 33.582 134 84 3 51 183 65 194 1.10e-15 79.7
MsG0780041235.01.T01 AT3G17380 31.298 131 84 3 59 183 25 155 1.82e-15 77.0
MsG0780041235.01.T01 AT3G17380 31.429 140 93 2 48 185 168 306 5.08e-15 75.9
MsG0780041235.01.T01 AT2G25320 31.788 151 92 3 55 195 405 554 2.46e-15 78.6
MsG0780041235.01.T01 AT2G25320 27.737 137 88 3 58 183 76 212 1.90e-12 69.7
MsG0780041235.01.T01 AT2G25320 31.788 151 92 3 55 195 405 554 2.63e-15 78.6
MsG0780041235.01.T01 AT2G25320 27.737 137 88 3 58 183 76 212 2.13e-12 69.7
MsG0780041235.01.T01 AT2G25320 31.788 151 92 3 55 195 404 553 2.75e-15 78.6
MsG0780041235.01.T01 AT2G25320 27.737 137 88 3 58 183 75 211 2.27e-12 69.3
MsG0780041235.01.T01 AT5G26260 31.081 148 96 4 46 187 53 200 2.79e-15 77.0
MsG0780041235.01.T01 AT3G58220 29.104 134 87 4 55 184 12 141 1.23e-14 75.5
MsG0780041235.01.T01 AT2G32870 35.971 139 79 5 55 185 277 413 1.36e-14 75.5
MsG0780041235.01.T01 AT2G01790 29.496 139 96 1 58 194 11 149 1.38e-14 73.9
MsG0780041235.01.T01 AT3G58220 29.323 133 86 4 56 184 13 141 1.41e-14 74.7
MsG0780041235.01.T01 AT3G58220 29.104 134 87 4 55 184 12 141 1.96e-14 73.2
MsG0780041235.01.T01 AT3G58220 29.104 134 87 4 55 184 12 141 2.19e-14 74.3
MsG0780041235.01.T01 AT4G09780 32.117 137 84 2 55 182 214 350 5.15e-14 73.6
MsG0780041235.01.T01 AT2G25330 32.680 153 93 3 55 197 359 511 1.78e-13 72.4
MsG0780041235.01.T01 AT2G25330 26.562 128 90 3 58 181 50 177 1.29e-11 66.6
MsG0780041235.01.T01 AT3G58240 22.393 326 225 6 48 363 1 308 2.34e-13 70.9
MsG0780041235.01.T01 AT1G04300 31.690 142 84 4 51 183 65 202 2.64e-13 72.4
MsG0780041235.01.T01 AT3G58440 34.375 128 81 3 54 181 9 133 3.65e-13 71.6
MsG0780041235.01.T01 AT4G09780 31.757 148 81 4 55 182 214 361 1.46e-12 69.3
MsG0780041235.01.T01 AT5G26320 30.172 116 75 2 73 182 81 196 3.28e-12 67.8
MsG0780041235.01.T01 AT4G09770 31.967 122 82 1 55 175 160 281 4.99e-12 66.6
MsG0780041235.01.T01 AT4G09770 31.967 122 82 1 55 175 160 281 4.99e-12 66.6
MsG0780041235.01.T01 AT3G46190 30.882 136 87 3 56 191 183 311 6.92e-12 66.2
MsG0780041235.01.T01 AT4G09770 31.967 122 82 1 55 175 186 307 7.08e-12 66.6
MsG0780041235.01.T01 AT3G46190 30.882 136 87 3 56 191 163 291 1.00e-11 65.9
MsG0780041235.01.T01 AT2G32880 33.094 139 84 4 55 185 178 315 1.10e-11 65.9
MsG0780041235.01.T01 AT2G42460 29.078 141 97 2 48 188 2 139 3.86e-11 63.9

Find 72 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGAAATAGTTTCCATATT+TGG 0.110416 7:+88578462 None:intergenic
GCAAACTGCCAATATGTTTA+AGG 0.125935 7:-88580637 MsG0780041235.01.T01:CDS
CAACAGTTTATCAATATATT+TGG 0.160836 7:-88580667 MsG0780041235.01.T01:CDS
ATAGATTTAAATTCTGAATT+AGG 0.189765 7:-88577958 MsG0780041235.01.T01:CDS
GTGAAATAGTTTCCATATTT+GGG 0.271306 7:+88578463 None:intergenic
GGAATTGGAAGTCCCAAATA+TGG 0.305242 7:-88578475 MsG0780041235.01.T01:CDS
CAGTAGTGTAGAACAATTAG+AGG 0.327754 7:-88578364 MsG0780041235.01.T01:CDS
TTGTTTACATCGTTCCCTTT+TGG 0.328528 7:+88580687 None:intergenic
TGATGCTCCATTTCTACAAA+TGG 0.340050 7:+88580966 None:intergenic
TCAATGCAAGTCAGAAGAAC+TGG 0.356803 7:-88578677 MsG0780041235.01.T01:CDS
AGACCTCTTTGTCGTATAAT+CGG 0.360444 7:-88582434 MsG0780041235.01.T01:CDS
GAGCTAAACTCGTGAAAGTA+TGG 0.363455 7:+88578649 None:intergenic
TCAAAATGTGCATATGGAAT+TGG 0.368049 7:-88578490 MsG0780041235.01.T01:CDS
GATTTGGCATTTGCTGCATT+AGG 0.377780 7:-88578285 MsG0780041235.01.T01:CDS
GTGAAGGATGTTTGTATTGT+TGG 0.378900 7:-88578597 MsG0780041235.01.T01:CDS
GCTCCATCCCTTAAACATAT+TGG 0.387375 7:+88580629 None:intergenic
ATTTGGCATTTGCTGCATTA+GGG 0.390923 7:-88578284 MsG0780041235.01.T01:CDS
AGCTGAGGTTTCAGTTTGTA+AGG 0.397187 7:-88578574 MsG0780041235.01.T01:CDS
CCTCATGTTCAATCTGCATT+AGG 0.400815 7:-88578141 MsG0780041235.01.T01:CDS
TATGAATGACCAAGCTTGTA+AGG 0.406254 7:-88578223 MsG0780041235.01.T01:CDS
GTAATGACGCGACTCTTCTT+CGG 0.409853 7:+88578309 None:intergenic
TTCACGATAAAACCGTTGTT+AGG 0.413903 7:+88578615 None:intergenic
TACGACAAAGAGGTCTTCTC+TGG 0.416486 7:+88582441 None:intergenic
CAAACTGCCAATATGTTTAA+GGG 0.416894 7:-88580636 MsG0780041235.01.T01:CDS
GAGTCGCGTCATTACCGATT+TGG 0.417813 7:-88578301 MsG0780041235.01.T01:CDS
TCTGACTTGCATTGAGCTCA+TGG 0.419738 7:+88578685 None:intergenic
TGAAAGTCAAAATGTGCATA+TGG 0.420616 7:-88578496 MsG0780041235.01.T01:CDS
AGGATTCTTATGTTTCCAAA+AGG 0.435968 7:-88580702 MsG0780041235.01.T01:CDS
CTTGAAGATCCTTACAAGCT+TGG 0.447089 7:+88578214 None:intergenic
CTGAATTAGGATGTGGGAGT+TGG 0.450052 7:-88577945 MsG0780041235.01.T01:CDS
TTTGGAGGTTGAAAAGTTGA+AGG 0.458143 7:-88578094 MsG0780041235.01.T01:CDS
GTGCAAACTAGTGTAGAAAC+TGG 0.459502 7:+88578441 None:intergenic
AGACGCTTGTTGAAAGCAAA+AGG 0.463813 7:-88577991 MsG0780041235.01.T01:CDS
GGATATCCGCCGAGGACAAA+AGG 0.466392 7:+88580858 None:intergenic
TTAAATTCTGAATTAGGATG+TGG 0.474050 7:-88577952 MsG0780041235.01.T01:CDS
TAATGCAGCAAATGCCAAAT+CGG 0.482815 7:+88578287 None:intergenic
AGGGTTGTTCTCACCCTCAA+TGG 0.484578 7:-88578403 MsG0780041235.01.T01:CDS
TTATGTGGAGAAAGCTTTGG+AGG 0.493062 7:-88578109 MsG0780041235.01.T01:CDS
GATGCTCCATTTCTACAAAT+GGG 0.493972 7:+88580967 None:intergenic
AAGTTATGTGGAGAAAGCTT+TGG 0.500157 7:-88578112 MsG0780041235.01.T01:CDS
GGCATTTGCTGCATTAGGGA+GGG 0.501307 7:-88578280 MsG0780041235.01.T01:CDS
GACCTCTTTGTCGTATAATC+GGG 0.507218 7:-88582433 MsG0780041235.01.T01:CDS
GGATTCTTATGTTTCCAAAA+GGG 0.519973 7:-88580701 MsG0780041235.01.T01:CDS
TAAATTCTGAATTAGGATGT+GGG 0.522500 7:-88577951 MsG0780041235.01.T01:CDS
TTGTCCTCGGCGGATATCCA+TGG 0.523925 7:-88580854 MsG0780041235.01.T01:intron
AATTTAGATTTGATGTCACT+TGG 0.525067 7:-88578170 MsG0780041235.01.T01:CDS
TCTTGAAACGGAGAGGCTAA+AGG 0.526186 7:-88578052 MsG0780041235.01.T01:CDS
AATGGAGCATCAAGAAATGA+AGG 0.527699 7:-88580955 MsG0780041235.01.T01:CDS
TGCACTAAACCTACTGACAC+AGG 0.533031 7:-88578423 MsG0780041235.01.T01:CDS
ACCTCGTGTGATTGTCATGT+TGG 0.536099 7:+88580563 None:intergenic
TGGCATTTGCTGCATTAGGG+AGG 0.539387 7:-88578281 MsG0780041235.01.T01:CDS
TGTTTGTATTGTTGGAGCTG+AGG 0.551124 7:-88578589 MsG0780041235.01.T01:CDS
CAATGCAAGTCAGAAGAACT+GGG 0.551796 7:-88578676 MsG0780041235.01.T01:CDS
AGATATTTGAGAAATTTACA+TGG 0.560145 7:-88580929 MsG0780041235.01.T01:CDS
CCTAATGCAGATTGAACATG+AGG 0.581300 7:+88578141 None:intergenic
CTGCCAATATGTTTAAGGGA+TGG 0.581416 7:-88580632 MsG0780041235.01.T01:CDS
TGAAAAGTTGAAGGAGAATG+TGG 0.590764 7:-88578085 MsG0780041235.01.T01:CDS
ACGACAAAGAGGTCTTCTCT+GGG 0.591145 7:+88582442 None:intergenic
GGCTGAGACTCAATAAGTGA+AGG 0.596886 7:+88578330 None:intergenic
ATTAGGAATGAAAAGTTATG+TGG 0.599520 7:-88578124 MsG0780041235.01.T01:CDS
GGTAACGCTAGTTCTTGAAA+CGG 0.603557 7:-88578064 MsG0780041235.01.T01:CDS
GACAAAGAGGTCTTCTCTGG+GGG 0.617253 7:+88582444 None:intergenic
GTCCCGATTATACGACAAAG+AGG 0.618758 7:+88582431 None:intergenic
CGCTAGTTCTTGAAACGGAG+AGG 0.622684 7:-88578059 MsG0780041235.01.T01:CDS
GAGAACAACCCTGTGTCAGT+AGG 0.632827 7:+88578414 None:intergenic
TCCGCCGAGGACAAAAGGAT+CGG 0.635544 7:+88580863 None:intergenic
GCACTAAACCTACTGACACA+GGG 0.669892 7:-88578422 MsG0780041235.01.T01:CDS
CAGCTTCATGATCCTAACAA+CGG 0.670959 7:-88578627 MsG0780041235.01.T01:CDS
CGACAAAGAGGTCTTCTCTG+GGG 0.688246 7:+88582443 None:intergenic
AATGCAAGTCAGAAGAACTG+GGG 0.737691 7:-88578675 MsG0780041235.01.T01:CDS
CATACCATGGATATCCGCCG+AGG 0.754008 7:+88580850 None:intergenic
GCCAACATGACAATCACACG+AGG 0.760979 7:-88580564 MsG0780041235.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACAAAAATGTAATAAA+TGG + Chr7:88579639-88579658 None:intergenic 10.0%
!! TTAAAATGAAAAAAAGATAA+AGG - Chr7:88580686-88580705 MsG0780041235.01.T01:CDS 10.0%
!! TTTGAATGTAAATATTATAA+TGG + Chr7:88578198-88578217 None:intergenic 10.0%
!!! ATAGTTAGATAAATTTTATT+AGG + Chr7:88580761-88580780 None:intergenic 10.0%
!!! ATCTTTTTTTCATTTTAATT+TGG + Chr7:88580684-88580703 None:intergenic 10.0%
!!! CATATATTTTTTTATTTAAG+TGG - Chr7:88578853-88578872 MsG0780041235.01.T01:intron 10.0%
!!! CTTTTTTATGAAAAATTTAT+AGG - Chr7:88579595-88579614 MsG0780041235.01.T01:intron 10.0%
!!! TATATTTTTTTATTTAAGTG+GGG - Chr7:88578855-88578874 MsG0780041235.01.T01:intron 10.0%
!!! TTTATATATTTTACGATTTT+AGG + Chr7:88581086-88581105 None:intergenic 10.0%
!! ATAGATTTAAATTCTGAATT+AGG - Chr7:88582428-88582447 MsG0780041235.01.T01:CDS 15.0%
!! CTTAAAAATTCATATGAAAA+TGG + Chr7:88580544-88580563 None:intergenic 15.0%
!! GTATATAAAAATTGACAAAA+AGG - Chr7:88580657-88580676 MsG0780041235.01.T01:CDS 15.0%
!! TAAAAAAAATTAAGTGAAAG+AGG - Chr7:88578583-88578602 MsG0780041235.01.T01:CDS 15.0%
!! TAAGTGATTATACAAATTAT+GGG - Chr7:88578739-88578758 MsG0780041235.01.T01:intron 15.0%
!! TTAAGTGATTATACAAATTA+TGG - Chr7:88578738-88578757 MsG0780041235.01.T01:intron 15.0%
!! TTGAAATGAAAAAAAGATAA+AGG + Chr7:88580506-88580525 None:intergenic 15.0%
!!! AAATTACGTTTTATTTTACT+AGG + Chr7:88578498-88578517 None:intergenic 15.0%
!!! AATTACGTTTTATTTTACTA+GGG + Chr7:88578497-88578516 None:intergenic 15.0%
!!! ATATTTTTTTATTTAAGTGG+GGG - Chr7:88578856-88578875 MsG0780041235.01.T01:intron 15.0%
!!! TATTTTTCTAAACGATAAAA+TGG + Chr7:88581423-88581442 None:intergenic 15.0%
!!! TTACTCTATAATTTAGAATT+TGG - Chr7:88581236-88581255 MsG0780041235.01.T01:intron 15.0%
!!! TTCATGATTTTATTTTCTTA+TGG - Chr7:88580571-88580590 MsG0780041235.01.T01:CDS 15.0%
!!! TTTTTCTTTTTTAAGTAGTT+TGG + Chr7:88580203-88580222 None:intergenic 15.0%
!! AAATTAAAGGACTATGATTA+AGG - Chr7:88581497-88581516 MsG0780041235.01.T01:intron 20.0%
!! ACAAAATACATTTCAAAAGA+AGG + Chr7:88581118-88581137 None:intergenic 20.0%
!! AGATATTTGAGAAATTTACA+TGG - Chr7:88579457-88579476 MsG0780041235.01.T01:intron 20.0%
!! AGTAACAAAACTAAATGAAA+TGG + Chr7:88578068-88578087 None:intergenic 20.0%
!! CAACAGTTTATCAATATATT+TGG - Chr7:88579719-88579738 MsG0780041235.01.T01:intron 20.0%
!! GTTACCTAAAATAAAGTTAA+GGG + Chr7:88580475-88580494 None:intergenic 20.0%
!! GTTCGATAAATTATTAGTAT+CGG - Chr7:88578980-88578999 MsG0780041235.01.T01:intron 20.0%
!! TAAGAACTTCTAAATATGAA+AGG - Chr7:88578557-88578576 MsG0780041235.01.T01:CDS 20.0%
!! TAATATCTTGTTGCATAATT+GGG + Chr7:88580425-88580444 None:intergenic 20.0%
!! TGTTACCTAAAATAAAGTTA+AGG + Chr7:88580476-88580495 None:intergenic 20.0%
!! TTAATATCTTGTTGCATAAT+TGG + Chr7:88580426-88580445 None:intergenic 20.0%
!! TTACATGAATTTCATCTAAT+AGG + Chr7:88578153-88578172 None:intergenic 20.0%
!! TTACCTAAAATAAAGTTAAG+GGG + Chr7:88580474-88580493 None:intergenic 20.0%
!! TTTAGATGAAAAATCACTAA+TGG - Chr7:88581386-88581405 MsG0780041235.01.T01:intron 20.0%
!! TTTAGGAGGAAAAATAATAA+AGG + Chr7:88581069-88581088 None:intergenic 20.0%
!!! AAAAAAAGAGTATACATGAT+TGG + Chr7:88579009-88579028 None:intergenic 20.0%
!!! AATATATATAAGTATTGGCT+TGG + Chr7:88579200-88579219 None:intergenic 20.0%
!!! AGTATATATTTTCTTTTGAG+AGG - Chr7:88580252-88580271 MsG0780041235.01.T01:intron 20.0%
!!! ATACTTTATCTTTTTAACGA+CGG - Chr7:88581033-88581052 MsG0780041235.01.T01:intron 20.0%
!!! ATATATATAAGTATTGGCTT+GGG + Chr7:88579199-88579218 None:intergenic 20.0%
!!! ATATATTTTACGATTTTAGG+AGG + Chr7:88581083-88581102 None:intergenic 20.0%
!!! ATTACGTTTTATTTTACTAG+GGG + Chr7:88578496-88578515 None:intergenic 20.0%
!!! TATTTTTTTATTTAAGTGGG+GGG - Chr7:88578857-88578876 MsG0780041235.01.T01:intron 20.0%
!!! TTAATTCTTTTTATGTGTGA+CGG - Chr7:88579280-88579299 MsG0780041235.01.T01:intron 20.0%
!!! TTTTGTATTTTGATCTGATT+TGG - Chr7:88579649-88579668 MsG0780041235.01.T01:intron 20.0%
! AAATTGACATTCGTTTAAGA+TGG + Chr7:88581359-88581378 None:intergenic 25.0%
! AAGAGGTGAAATTTATCTAA+CGG - Chr7:88578600-88578619 MsG0780041235.01.T01:CDS 25.0%
! AATCACTTAATCAGTCAATT+TGG + Chr7:88578728-88578747 None:intergenic 25.0%
! AATTTAGATTTGATGTCACT+TGG - Chr7:88582216-88582235 MsG0780041235.01.T01:intron 25.0%
! ACTAAAGTGAATTACATTGT+TGG - Chr7:88580832-88580851 MsG0780041235.01.T01:intron 25.0%
! AGATATCTTAAAACGAGATA+TGG + Chr7:88581563-88581582 None:intergenic 25.0%
! ATTAGGAATGAAAAGTTATG+TGG - Chr7:88582262-88582281 MsG0780041235.01.T01:intron 25.0%
! CTTAATTTCAGATAACAGTT+TGG + Chr7:88580713-88580732 None:intergenic 25.0%
! GATCAGATTTATGTACAAAA+AGG - Chr7:88578773-88578792 MsG0780041235.01.T01:intron 25.0%
! GATTTCATATACATCACATA+AGG - Chr7:88578221-88578240 MsG0780041235.01.T01:CDS 25.0%
! GTATAGTTGTTATCTAGAAA+AGG + Chr7:88581017-88581036 None:intergenic 25.0%
! TAAATTCTGAATTAGGATGT+GGG - Chr7:88582435-88582454 MsG0780041235.01.T01:CDS 25.0%
! TATACATCACATAAGGTAAA+AGG - Chr7:88578228-88578247 MsG0780041235.01.T01:CDS 25.0%
! TCATATGAAAATGGATCAAA+AGG + Chr7:88580535-88580554 None:intergenic 25.0%
! TGAAAAATCACTAATGGTTA+TGG - Chr7:88581392-88581411 MsG0780041235.01.T01:intron 25.0%
! TTAAATTCTGAATTAGGATG+TGG - Chr7:88582434-88582453 MsG0780041235.01.T01:CDS 25.0%
! TTTCTAAACGATAAAATGGT+GGG + Chr7:88581419-88581438 None:intergenic 25.0%
!! ATTTTTCCCATTTGTAGAAA+TGG - Chr7:88579413-88579432 MsG0780041235.01.T01:intron 25.0%
!! TAATTCTTTTTATGTGTGAC+GGG - Chr7:88579281-88579300 MsG0780041235.01.T01:intron 25.0%
!! TTCGAATCACTTAGAAATTT+TGG - Chr7:88579561-88579580 MsG0780041235.01.T01:intron 25.0%
!! TTTTCTAAACGATAAAATGG+TGG + Chr7:88581420-88581439 None:intergenic 25.0%
!!! AAATATTTTGTCTGAAGCTT+TGG - Chr7:88581471-88581490 MsG0780041235.01.T01:intron 25.0%
!!! ATCCATAATTTTTTCCATTG+AGG + Chr7:88582000-88582019 None:intergenic 25.0%
!!! ATTTTGATCTGATTTGGTTT+TGG - Chr7:88579655-88579674 MsG0780041235.01.T01:intron 25.0%
!!! CATTTTAATGAGATGTGAAT+TGG - Chr7:88581303-88581322 MsG0780041235.01.T01:intron 25.0%
!!! GAAGCTTTGGATTAAATTAA+AGG - Chr7:88581484-88581503 MsG0780041235.01.T01:intron 25.0%
!!! GTTGATTTGATTACAGTATT+AGG - Chr7:88581618-88581637 MsG0780041235.01.T01:intron 25.0%
!!! TAAGGATCTTCAAGTTTTAT+GGG - Chr7:88582181-88582200 MsG0780041235.01.T01:intron 25.0%
!!! TATATTTTCTTTTGAGAGGT+AGG - Chr7:88580256-88580275 MsG0780041235.01.T01:intron 25.0%
!!! TCCATAATTTTTTCCATTGA+GGG + Chr7:88581999-88582018 None:intergenic 25.0%
!!! TTCTTTTTTAAGTAGTTTGG+TGG + Chr7:88580200-88580219 None:intergenic 25.0%
!!! TTTATCGAACCTTTTAATTC+AGG + Chr7:88578970-88578989 None:intergenic 25.0%
AAATTAAAACAATGCCGTCT+CGG - Chr7:88578435-88578454 MsG0780041235.01.T01:CDS 30.0%
ACAAAATTTCTACCGTCAAA+AGG + Chr7:88579860-88579879 None:intergenic 30.0%
ACCCTCAATGGAAAAAATTA+TGG - Chr7:88581995-88582014 MsG0780041235.01.T01:intron 30.0%
ACTAGTATTCTACGAATGAA+AGG - Chr7:88581270-88581289 MsG0780041235.01.T01:intron 30.0%
AGGATTCTTATGTTTCCAAA+AGG - Chr7:88579684-88579703 MsG0780041235.01.T01:intron 30.0%
ATTGTATGACATGTCATGAT+TGG + Chr7:88579917-88579936 None:intergenic 30.0%
CAAAATTTCTACCGTCAAAA+GGG + Chr7:88579859-88579878 None:intergenic 30.0%
CAAACTGCCAATATGTTTAA+GGG - Chr7:88579750-88579769 MsG0780041235.01.T01:intron 30.0%
CATAAGATCAAGATATGTAC+CGG + Chr7:88579259-88579278 None:intergenic 30.0%
GGATTCTTATGTTTCCAAAA+GGG - Chr7:88579685-88579704 MsG0780041235.01.T01:intron 30.0%
GTGATTATACAAATTATGGG+TGG - Chr7:88578742-88578761 MsG0780041235.01.T01:intron 30.0%
TAAAACGAGATATGGAAACA+TGG + Chr7:88581555-88581574 None:intergenic 30.0%
TAGGAGAATAAATGTAAGAG+AGG + Chr7:88578134-88578153 None:intergenic 30.0%
TCAAAATGTGCATATGGAAT+TGG - Chr7:88581896-88581915 MsG0780041235.01.T01:intron 30.0%
TGAAAGTCAAAATGTGCATA+TGG - Chr7:88581890-88581909 MsG0780041235.01.T01:intron 30.0%
TTCTAAACGATAAAATGGTG+GGG + Chr7:88581418-88581437 None:intergenic 30.0%
TTCTTATGCAATCAAAGACA+AGG + Chr7:88580621-88580640 None:intergenic 30.0%
TTGTGTTTCAAATATGCATG+TGG - Chr7:88579876-88579895 MsG0780041235.01.T01:intron 30.0%
! ATGATCCAATTTTCCTTTCA+AGG - Chr7:88580361-88580380 MsG0780041235.01.T01:intron 30.0%
! TCGTTTAAGATGGAATTTGT+TGG + Chr7:88581349-88581368 None:intergenic 30.0%
! TTTGTCGTTTCATTCATTCA+TGG - Chr7:88580306-88580325 MsG0780041235.01.T01:intron 30.0%
! TTTTATGACTAGTGACTAGA+TGG + Chr7:88578384-88578403 None:intergenic 30.0%
! TTTTTCCAAGGTGAATAAGT+GGG + Chr7:88580166-88580185 None:intergenic 30.0%
!! GTAAGGATCTTCAAGTTTTA+TGG - Chr7:88582180-88582199 MsG0780041235.01.T01:intron 30.0%
!! TTGTTTTACACAAACGAACA+CGG - Chr7:88580098-88580117 MsG0780041235.01.T01:intron 30.0%
!!! ATCTGATTTGGTTTTGGTTT+AGG - Chr7:88579661-88579680 MsG0780041235.01.T01:intron 30.0%
!!! CATTTTGACTTTCAGATGTT+AGG + Chr7:88581884-88581903 None:intergenic 30.0%
!!! GTTAGAATTCGTTTTTTCCA+AGG + Chr7:88580178-88580197 None:intergenic 30.0%
!!! TAGCCCCTTAACTTTATTTT+AGG - Chr7:88580468-88580487 MsG0780041235.01.T01:intron 30.0%
!!! TTTTTTCCAAGGTGAATAAG+TGG + Chr7:88580167-88580186 None:intergenic 30.0%
AAGTTATGTGGAGAAAGCTT+TGG - Chr7:88582274-88582293 MsG0780041235.01.T01:intron 35.0%
ACGGTACATGATTATATGCA+GGG - Chr7:88580117-88580136 MsG0780041235.01.T01:intron 35.0%
AGACCTCTTTGTCGTATAAT+CGG - Chr7:88577952-88577971 MsG0780041235.01.T01:CDS 35.0%
AGAGGTAAGATTACGTTACA+AGG + Chr7:88579041-88579060 None:intergenic 35.0%
AGTGATTCGAATTCATACCA+TGG + Chr7:88579552-88579571 None:intergenic 35.0%
CAAATTATGGGTGGTTTGAT+AGG - Chr7:88578751-88578770 MsG0780041235.01.T01:intron 35.0%
CAGTAGTGTAGAACAATTAG+AGG - Chr7:88582022-88582041 MsG0780041235.01.T01:intron 35.0%
CCAATCCTTGAAAGGAAAAT+TGG + Chr7:88580369-88580388 None:intergenic 35.0%
CGGTACATATCTTGATCTTA+TGG - Chr7:88579257-88579276 MsG0780041235.01.T01:intron 35.0%
CTAGACTACTTGACAAAAAG+TGG - Chr7:88580921-88580940 MsG0780041235.01.T01:CDS 35.0%
CTTTATCAACCAATCATGAC+AGG - Chr7:88580040-88580059 MsG0780041235.01.T01:intron 35.0%
GAATGAGTACATCATGACAT+AGG - Chr7:88578036-88578055 MsG0780041235.01.T01:CDS 35.0%
GACATGTCATACAATGTTAG+TGG - Chr7:88579922-88579941 MsG0780041235.01.T01:intron 35.0%
GATGCTCCATTTCTACAAAT+GGG + Chr7:88579422-88579441 None:intergenic 35.0%
GCAAACTGCCAATATGTTTA+AGG - Chr7:88579749-88579768 MsG0780041235.01.T01:intron 35.0%
GTGAAGGATGTTTGTATTGT+TGG - Chr7:88581789-88581808 MsG0780041235.01.T01:intron 35.0%
TAAAAAAGAAGCAGCAGAAG+AGG + Chr7:88579059-88579078 None:intergenic 35.0%
TAATGCAGCAAATGCCAAAT+CGG + Chr7:88582102-88582121 None:intergenic 35.0%
TATGAATGACCAAGCTTGTA+AGG - Chr7:88582163-88582182 MsG0780041235.01.T01:intron 35.0%
TCGCTAAAATTGTAGAAGAG+AGG - Chr7:88580888-88580907 MsG0780041235.01.T01:CDS 35.0%
TGAAAAGTTGAAGGAGAATG+TGG - Chr7:88582301-88582320 MsG0780041235.01.T01:intron 35.0%
TGATGCTCCATTTCTACAAA+TGG + Chr7:88579423-88579442 None:intergenic 35.0%
TTCACGATAAAACCGTTGTT+AGG + Chr7:88581774-88581793 None:intergenic 35.0%
TTCTAATGACCTGTCATGAT+TGG + Chr7:88580052-88580071 None:intergenic 35.0%
TTCTACGAATGAAAGGATTC+TGG - Chr7:88581277-88581296 MsG0780041235.01.T01:intron 35.0%
TTTGGAGGTTGAAAAGTTGA+AGG - Chr7:88582292-88582311 MsG0780041235.01.T01:intron 35.0%
! AATGGAGCATCAAGAAATGA+AGG - Chr7:88579431-88579450 MsG0780041235.01.T01:intron 35.0%
! ATTTGGCATTTGCTGCATTA+GGG - Chr7:88582102-88582121 MsG0780041235.01.T01:intron 35.0%
! CCAATTTTCCTTTCAAGGAT+TGG - Chr7:88580366-88580385 MsG0780041235.01.T01:intron 35.0%
! CTTTTTAACGACGGCAAAAT+TGG - Chr7:88581042-88581061 MsG0780041235.01.T01:intron 35.0%
! TAGAACTCTATCCCTTTTGA+CGG - Chr7:88579845-88579864 MsG0780041235.01.T01:intron 35.0%
! TTGTTTACATCGTTCCCTTT+TGG + Chr7:88579702-88579721 None:intergenic 35.0%
! TTTTCCAAGGTGAATAAGTG+GGG + Chr7:88580165-88580184 None:intergenic 35.0%
!! ATAATGGATCTCACCTAAAG+TGG + Chr7:88578182-88578201 None:intergenic 35.0%
!! ATTTATCTAACGGTGTCGTT+TGG - Chr7:88578610-88578629 MsG0780041235.01.T01:CDS 35.0%
!! TAACAACGGTTTTATCGTGA+AGG - Chr7:88581773-88581792 MsG0780041235.01.T01:intron 35.0%
!! TTTTTATTTAAGTGGGGGGT+TGG - Chr7:88578861-88578880 MsG0780041235.01.T01:intron 35.0%
!!! ATAAGTATTGGCTTGGGTTT+TGG + Chr7:88579193-88579212 None:intergenic 35.0%
!!! TAAGTATTGGCTTGGGTTTT+GGG + Chr7:88579192-88579211 None:intergenic 35.0%
!!! TGATTTGGTTTTGGTTTAGG+AGG - Chr7:88579664-88579683 MsG0780041235.01.T01:intron 35.0%
AATGCAAGTCAGAAGAACTG+GGG - Chr7:88581711-88581730 MsG0780041235.01.T01:intron 40.0%
AGCTGAGGTTTCAGTTTGTA+AGG - Chr7:88581812-88581831 MsG0780041235.01.T01:intron 40.0%
AGTAATCCCTCGTTCTTAAG+TGG - Chr7:88578004-88578023 MsG0780041235.01.T01:CDS 40.0%
ATGCATTTCCCTACTACCAA+GGG + Chr7:88580341-88580360 None:intergenic 40.0%
CAATGCAAGTCAGAAGAACT+GGG - Chr7:88581710-88581729 MsG0780041235.01.T01:intron 40.0%
CACGGTACATGATTATATGC+AGG - Chr7:88580116-88580135 MsG0780041235.01.T01:intron 40.0%
CAGCTTCATGATCCTAACAA+CGG - Chr7:88581759-88581778 MsG0780041235.01.T01:intron 40.0%
CATGTAAGTCTCACCACTTT+AGG - Chr7:88578166-88578185 MsG0780041235.01.T01:CDS 40.0%
CCTAATGCAGATTGAACATG+AGG + Chr7:88582248-88582267 None:intergenic 40.0%
CCTCATGTTCAATCTGCATT+AGG - Chr7:88582245-88582264 MsG0780041235.01.T01:intron 40.0%
CGGTACATGATTATATGCAG+GGG - Chr7:88580118-88580137 MsG0780041235.01.T01:intron 40.0%
CTGCCAATATGTTTAAGGGA+TGG - Chr7:88579754-88579773 MsG0780041235.01.T01:intron 40.0%
CTTGAAGATCCTTACAAGCT+TGG + Chr7:88582175-88582194 None:intergenic 40.0%
GACCTCTTTGTCGTATAATC+GGG - Chr7:88577953-88577972 MsG0780041235.01.T01:CDS 40.0%
GAGCTAAACTCGTGAAAGTA+TGG + Chr7:88581740-88581759 None:intergenic 40.0%
GATGTGAATTGGACCATGAA+AGG - Chr7:88581314-88581333 MsG0780041235.01.T01:intron 40.0%
GCTAAATAGCTCACCCAAAT+TGG - Chr7:88579123-88579142 MsG0780041235.01.T01:intron 40.0%
GCTCCATCCCTTAAACATAT+TGG + Chr7:88579760-88579779 None:intergenic 40.0%
GGAATTGGAAGTCCCAAATA+TGG - Chr7:88581911-88581930 MsG0780041235.01.T01:intron 40.0%
GTGCAAACTAGTGTAGAAAC+TGG + Chr7:88581948-88581967 None:intergenic 40.0%
GTGGAAAAGGGTAAAACGAA+TGG - Chr7:88578651-88578670 MsG0780041235.01.T01:CDS 40.0%
TATGCATTTCCCTACTACCA+AGG + Chr7:88580342-88580361 None:intergenic 40.0%
TCAATGCAAGTCAGAAGAAC+TGG - Chr7:88581709-88581728 MsG0780041235.01.T01:intron 40.0%
TGTTTGTATTGTTGGAGCTG+AGG - Chr7:88581797-88581816 MsG0780041235.01.T01:intron 40.0%
TTGGCATGTCTTTCCTTTCA+TGG + Chr7:88581330-88581349 None:intergenic 40.0%
TTTCCTTTCAAGGATTGGAG+TGG - Chr7:88580371-88580390 MsG0780041235.01.T01:intron 40.0%
! AGACGCTTGTTGAAAGCAAA+AGG - Chr7:88582395-88582414 MsG0780041235.01.T01:intron 40.0%
! GATTTGGCATTTGCTGCATT+AGG - Chr7:88582101-88582120 MsG0780041235.01.T01:intron 40.0%
! GGTAACGCTAGTTCTTGAAA+CGG - Chr7:88582322-88582341 MsG0780041235.01.T01:intron 40.0%
! TTATGTGGAGAAAGCTTTGG+AGG - Chr7:88582277-88582296 MsG0780041235.01.T01:intron 40.0%
! TTTACCCTTTTCCACAACAG+AGG + Chr7:88578646-88578665 None:intergenic 40.0%
!! TTGAGCTCATGGTTAGTTTC+TGG + Chr7:88581693-88581712 None:intergenic 40.0%
!!! CTTTTTATGTGTGACGGGTA+CGG - Chr7:88579286-88579305 MsG0780041235.01.T01:intron 40.0%
!!! TTTTTATGTGTGACGGGTAC+GGG - Chr7:88579287-88579306 MsG0780041235.01.T01:intron 40.0%
AACACCCCACTTATTCACCT+TGG - Chr7:88580158-88580177 MsG0780041235.01.T01:intron 45.0%
ACATGATTATATGCAGGGGC+TGG - Chr7:88580122-88580141 MsG0780041235.01.T01:intron 45.0%
ACCTCGTGTGATTGTCATGT+TGG + Chr7:88579826-88579845 None:intergenic 45.0%
ACGACAAAGAGGTCTTCTCT+GGG + Chr7:88577947-88577966 None:intergenic 45.0%
ATCCCAACCACTTAAGAACG+AGG + Chr7:88578014-88578033 None:intergenic 45.0%
ATCCCTCGTTCTTAAGTGGT+TGG - Chr7:88578008-88578027 MsG0780041235.01.T01:CDS 45.0%
CACTCCTCTGTTGTGGAAAA+GGG - Chr7:88578639-88578658 MsG0780041235.01.T01:CDS 45.0%
CTGAATTAGGATGTGGGAGT+TGG - Chr7:88582441-88582460 MsG0780041235.01.T01:CDS 45.0%
GATTTGTCACTCCTCTGTTG+TGG - Chr7:88578632-88578651 MsG0780041235.01.T01:CDS 45.0%
GCACTAAACCTACTGACACA+GGG - Chr7:88581964-88581983 MsG0780041235.01.T01:intron 45.0%
GGCTGAGACTCAATAAGTGA+AGG + Chr7:88582059-88582078 None:intergenic 45.0%
GTAATGACGCGACTCTTCTT+CGG + Chr7:88582080-88582099 None:intergenic 45.0%
GTCCCGATTATACGACAAAG+AGG + Chr7:88577958-88577977 None:intergenic 45.0%
TACGACAAAGAGGTCTTCTC+TGG + Chr7:88577948-88577967 None:intergenic 45.0%
TCACTCCTCTGTTGTGGAAA+AGG - Chr7:88578638-88578657 MsG0780041235.01.T01:CDS 45.0%
TCCCAACCACTTAAGAACGA+GGG + Chr7:88578013-88578032 None:intergenic 45.0%
TCCCTCGTTCTTAAGTGGTT+GGG - Chr7:88578009-88578028 MsG0780041235.01.T01:CDS 45.0%
TCTTGAAACGGAGAGGCTAA+AGG - Chr7:88582334-88582353 MsG0780041235.01.T01:intron 45.0%
TGCAATGTGCTCAACTAGGT+CGG + Chr7:88578931-88578950 None:intergenic 45.0%
TGCACTAAACCTACTGACAC+AGG - Chr7:88581963-88581982 MsG0780041235.01.T01:intron 45.0%
TGTTTGAGTCCCGTAGCATT+TGG - Chr7:88578901-88578920 MsG0780041235.01.T01:intron 45.0%
! ATTCTCTCCGGTGCCAATTT+GGG + Chr7:88579139-88579158 None:intergenic 45.0%
! TACTCCGATCCTTTTGTCCT+CGG - Chr7:88579519-88579538 MsG0780041235.01.T01:intron 45.0%
! TCTGACTTGCATTGAGCTCA+TGG + Chr7:88581704-88581723 None:intergenic 45.0%
!! CGAACCTTTTAATTCAGGCC+CGG + Chr7:88578965-88578984 None:intergenic 45.0%
!! TTGGAGTGGTGGTGGAATTT+AGG - Chr7:88580385-88580404 MsG0780041235.01.T01:intron 45.0%
!! AAATAAATATATATAAGTAT+TGG + Chr7:88579205-88579224 None:intergenic 5.0%
!!! ATATATTTTTTTATTTAAGT+GGG - Chr7:88578854-88578873 MsG0780041235.01.T01:intron 5.0%
!!! ATTTTAAACTTTAAAAATTA+TGG + Chr7:88579953-88579972 None:intergenic 5.0%
AAGGCCGGGCCTGAATTAAA+AGG - Chr7:88578958-88578977 MsG0780041235.01.T01:intron 50.0%
AAGTAGTTGTGCAGCACTGC+CGG - Chr7:88579237-88579256 MsG0780041235.01.T01:intron 50.0%
AGCCTCCTATTTCACCGAGA+CGG + Chr7:88578452-88578471 None:intergenic 50.0%
AGGGTTGTTCTCACCCTCAA+TGG - Chr7:88581983-88582002 MsG0780041235.01.T01:intron 50.0%
CAATGCCGTCTCGGTGAAAT+AGG - Chr7:88578444-88578463 MsG0780041235.01.T01:CDS 50.0%
CCACCACTCCAATCCTTGAA+AGG + Chr7:88580377-88580396 None:intergenic 50.0%
CCTTTCAAGGATTGGAGTGG+TGG - Chr7:88580374-88580393 MsG0780041235.01.T01:intron 50.0%
CGACAAAGAGGTCTTCTCTG+GGG + Chr7:88577946-88577965 None:intergenic 50.0%
GAATCGAACGTGAGACCTTG+CGG - Chr7:88579155-88579174 MsG0780041235.01.T01:intron 50.0%
GACAAAGAGGTCTTCTCTGG+GGG + Chr7:88577945-88577964 None:intergenic 50.0%
GAGAACAACCCTGTGTCAGT+AGG + Chr7:88581975-88581994 None:intergenic 50.0%
GCAATGTGCTCAACTAGGTC+GGG + Chr7:88578930-88578949 None:intergenic 50.0%
GCCAACATGACAATCACACG+AGG - Chr7:88579822-88579841 MsG0780041235.01.T01:intron 50.0%
GGAGTGCAATGTGCTCAACT+AGG + Chr7:88578935-88578954 None:intergenic 50.0%
GTCTCACGTTCGATTCTCTC+CGG + Chr7:88579151-88579170 None:intergenic 50.0%
TAGCTCACCCAAATTGGCAC+CGG - Chr7:88579129-88579148 MsG0780041235.01.T01:intron 50.0%
TCTCGGTGAAATAGGAGGCT+CGG - Chr7:88578452-88578471 MsG0780041235.01.T01:CDS 50.0%
TTCAAGGATTGGAGTGGTGG+TGG - Chr7:88580377-88580396 MsG0780041235.01.T01:intron 50.0%
TTCATGGACTCTCTGACCCT+TGG - Chr7:88580322-88580341 MsG0780041235.01.T01:intron 50.0%
TTGAGTCCCGTAGCATTTGG+AGG - Chr7:88578904-88578923 MsG0780041235.01.T01:intron 50.0%
TTTAATTCAGGCCCGGCCTT+GGG + Chr7:88578958-88578977 None:intergenic 50.0%
! ACTCTCTGACCCTTGGTAGT+AGG - Chr7:88580329-88580348 MsG0780041235.01.T01:intron 50.0%
! CGCTAGTTCTTGAAACGGAG+AGG - Chr7:88582327-88582346 MsG0780041235.01.T01:intron 50.0%
! CTCTCTGACCCTTGGTAGTA+GGG - Chr7:88580330-88580349 MsG0780041235.01.T01:intron 50.0%
! GAGTCGCGTCATTACCGATT+TGG - Chr7:88582085-88582104 MsG0780041235.01.T01:intron 50.0%
! GATTCTCTCCGGTGCCAATT+TGG + Chr7:88579140-88579159 None:intergenic 50.0%
! GGCATTTGCTGCATTAGGGA+GGG - Chr7:88582106-88582125 MsG0780041235.01.T01:intron 50.0%
! GGTGAATAAGTGGGGTGTTC+CGG + Chr7:88580157-88580176 None:intergenic 50.0%
! TGGCATTTGCTGCATTAGGG+AGG - Chr7:88582105-88582124 MsG0780041235.01.T01:intron 50.0%
!! TTTTAATTCAGGCCCGGCCT+TGG + Chr7:88578959-88578978 None:intergenic 50.0%
CATACCATGGATATCCGCCG+AGG + Chr7:88579539-88579558 None:intergenic 55.0%
GGATATCCGCCGAGGACAAA+AGG + Chr7:88579531-88579550 None:intergenic 55.0%
TCCGCCGAGGACAAAAGGAT+CGG + Chr7:88579526-88579545 None:intergenic 55.0%
TGCCGTCTCGGTGAAATAGG+AGG - Chr7:88578447-88578466 MsG0780041235.01.T01:CDS 55.0%
TTAATTCAGGCCCGGCCTTG+GGG + Chr7:88578957-88578976 None:intergenic 55.0%
TTGTCCTCGGCGGATATCCA+TGG - Chr7:88579532-88579551 MsG0780041235.01.T01:intron 55.0%
! TCCGATCCTTTTGTCCTCGG+CGG - Chr7:88579522-88579541 MsG0780041235.01.T01:intron 55.0%
ACATTGCACTCCCCCAAGGC+CGG - Chr7:88578943-88578962 MsG0780041235.01.T01:intron 60.0%
GAGCACATTGCACTCCCCCA+AGG - Chr7:88578939-88578958 MsG0780041235.01.T01:intron 60.0%
GGTCGGGCCTCCAAATGCTA+CGG + Chr7:88578914-88578933 None:intergenic 60.0%
GTCGGGCCTCCAAATGCTAC+GGG + Chr7:88578913-88578932 None:intergenic 60.0%
TAATTCAGGCCCGGCCTTGG+GGG + Chr7:88578956-88578975 None:intergenic 60.0%
TCGAACGTGAGACCTTGCGG+AGG - Chr7:88579158-88579177 MsG0780041235.01.T01:intron 60.0%
CAGGGGCTGGAGTTCGAAGC+CGG - Chr7:88580135-88580154 MsG0780041235.01.T01:intron 65.0%
CATTGCACTCCCCCAAGGCC+GGG - Chr7:88578944-88578963 MsG0780041235.01.T01:intron 65.0%
! TGGGAGTGTGCTCCTCCGCA+AGG + Chr7:88579173-88579192 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 88577936 88582472 88577936 ID=MsG0780041235.01;Name=MsG0780041235.01
Chr7 mRNA 88577936 88582472 88577936 ID=MsG0780041235.01.T01;Parent=MsG0780041235.01;Name=MsG0780041235.01.T01;_AED=0.47;_eAED=0.49;_QI=0|0|0|0.75|0.66|0.5|4|0|395
Chr7 exon 88582404 88582472 88582404 ID=MsG0780041235.01.T01:exon:12157;Parent=MsG0780041235.01.T01
Chr7 exon 88580855 88581033 88580855 ID=MsG0780041235.01.T01:exon:12156;Parent=MsG0780041235.01.T01
Chr7 exon 88580565 88580725 88580565 ID=MsG0780041235.01.T01:exon:12155;Parent=MsG0780041235.01.T01
Chr7 exon 88577936 88578714 88577936 ID=MsG0780041235.01.T01:exon:12154;Parent=MsG0780041235.01.T01
Chr7 CDS 88582404 88582472 88582404 ID=MsG0780041235.01.T01:cds;Parent=MsG0780041235.01.T01
Chr7 CDS 88580855 88581033 88580855 ID=MsG0780041235.01.T01:cds;Parent=MsG0780041235.01.T01
Chr7 CDS 88580565 88580725 88580565 ID=MsG0780041235.01.T01:cds;Parent=MsG0780041235.01.T01
Chr7 CDS 88577936 88578714 88577936 ID=MsG0780041235.01.T01:cds;Parent=MsG0780041235.01.T01
Gene Sequence

>MsG0780041235.01.T01

ATGGATCCCCCAGAGAAGACCTCTTTGTCGTATAATCGGGACAACGACATTTATGTCGAAAATCAAAGATGTTTTACTGTGTCTATTTTTGTTAATTTTAACTGCATATTTTTCCCATTTGTAGAAATGGAGCATCAAGAAATGAAGGATGAGATATTTGAGAAATTTACATGGAAGATTGAGAACTTCTCTCGTTTGAACACTAATGAGCTTTACTCCGATCCTTTTGTCCTCGGCGGATATCCATGGAGGATTCTTATGTTTCCAAAAGGGAACGATGTAAACAACAGTTTATCAATATATTTGGAAGCTATGCAAACTGCCAATATGTTTAAGGGATGGAGCAGAGATGTGAAATTTAAACTGCTTGTATTCAATCAGATCAATGCCAACATGACAATCACACGAGAAACTAACCATGAGCTCAATGCAAGTCAGAAGAACTGGGGTTTCCATACTTTCACGAGTTTAGCTCAGCTTCATGATCCTAACAACGGTTTTATCGTGAAGGATGTTTGTATTGTTGGAGCTGAGGTTTCAGTTTGTAAGGTAACACATGAGAACAAAGTGAATCAAGAAGCGAACTTAGCTGTTTTCCTAACATCTGAAAGTCAAAATGTGCATATGGAATTGGAAGTCCCAAATATGGAAACTATTTCACCAGTTTCTACACTAGTTTGCACTAAACCTACTGACACAGGGTTGTTCTCACCCTCAATGGAAAAAATTATGGATTTCAGTAGTGTAGAACAATTAGAGGAAATATATAATCCTTCACTTATTGAGTCTCAGCCGAAGAAGAGTCGCGTCATTACCGATTTGGCATTTGCTGCATTAGGGAGGGTTTTTTATTTCTTTAAGACTAAAAAAGTGAAAGATATGAATGACCAAGCTTGTAAGGATCTTCAAGTTTTATGGGATGAACTTAAGAAATTTAGATTTGATGTCACTTGGCTAGAGCCTCATGTTCAATCTGCATTAGGAATGAAAAGTTATGTGGAGAAAGCTTTGGAGGTTGAAAAGTTGAAGGAGAATGTGGTAACGCTAGTTCTTGAAACGGAGAGGCTAAAGGCAAAGTTGCTTGCTGCTGAAGTAAATCTTGACATAGAAAGACGCTTGTTGAAAGCAAAAGGCTTCAAAGAAATAGATTTAAATTCTGAATTAGGATGTGGGAGTTGGAAGTCATAG
Protein sequence

>MsG0780041235.01.T01

MDPPEKTSLSYNRDNDIYVENQRCFTVSIFVNFNCIFFPFVEMEHQEMKDEIFEKFTWKIENFSRLNTNELYSDPFVLGGYPWRILMFPKGNDVNNSLSIYLEAMQTANMFKGWSRDVKFKLLVFNQINANMTITRETNHELNASQKNWGFHTFTSLAQLHDPNNGFIVKDVCIVGAEVSVCKVTHENKVNQEANLAVFLTSESQNVHMELEVPNMETISPVSTLVCTKPTDTGLFSPSMEKIMDFSSVEQLEEIYNPSLIESQPKKSRVITDLAFAALGRVFYFFKTKKVKDMNDQACKDLQVLWDELKKFRFDVTWLEPHVQSALGMKSYVEKALEVEKLKENVVTLVLETERLKAKLLAAEVNLDIERRLLKAKGFKEIDLNSELGCGSWKS*