AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048944.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048944.01.T01 MTR_2g054880 93.850 374 23 0 1 374 1 374 0.0 737
MsG0080048944.01.T01 MTR_4g119900 37.539 317 161 8 26 333 142 430 2.93e-53 184
MsG0080048944.01.T01 MTR_4g119900 37.539 317 161 8 26 333 142 430 3.03e-53 184
MsG0080048944.01.T01 MTR_2g436780 37.864 309 171 8 26 333 144 432 7.11e-53 184
MsG0080048944.01.T01 MTR_2g436780 37.864 309 171 8 26 333 144 432 7.47e-53 183
MsG0080048944.01.T01 MTR_1g113940 36.877 301 165 8 18 307 3 289 2.52e-52 177
MsG0080048944.01.T01 MTR_6g091770 32.759 348 201 10 26 372 65 380 5.94e-49 169
MsG0080048944.01.T01 MTR_3g013960 35.224 335 165 14 25 331 255 565 2.80e-38 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048944.01.T01 AT1G04870 69.832 358 108 0 17 374 26 383 0.0 550
MsG0080048944.01.T01 AT1G04870 64.643 280 99 0 95 374 1 280 8.12e-142 404
MsG0080048944.01.T01 AT3G20020 35.112 356 183 7 26 352 83 419 1.19e-61 204
MsG0080048944.01.T01 AT3G20020 35.112 356 183 7 26 352 83 419 1.59e-61 204
MsG0080048944.01.T01 AT3G06930 35.905 337 190 11 2 333 121 436 3.27e-52 182
MsG0080048944.01.T01 AT3G06930 35.905 337 190 11 2 333 121 436 3.71e-52 182
MsG0080048944.01.T01 AT3G20020 32.584 356 170 8 26 352 83 397 9.51e-52 178
MsG0080048944.01.T01 AT4G29510 33.529 340 196 8 26 364 72 382 3.03e-51 176
MsG0080048944.01.T01 AT5G49020 36.893 309 174 9 26 333 149 437 9.47e-51 177
MsG0080048944.01.T01 AT5G49020 36.893 309 174 9 26 333 151 439 9.50e-51 178
MsG0080048944.01.T01 AT2G19670 32.927 328 190 8 26 352 48 346 1.62e-50 173
MsG0080048944.01.T01 AT3G12270 34.731 334 163 12 25 335 244 545 2.49e-39 148

Find 11 sgRNAs with CRISPR-Local

Find 457 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGAACTGTACGGTTATTA+AGG 0.177944 contig554end:+17008 MsG0080048944.01.T01:exon
ACTTGGTTCTTCCGATCATT+TGG 0.357148 contig554end:+17085 MsG0080048944.01.T01:exon
TCGAACTGTACGGTTATTAA+GGG 0.392893 contig554end:+17009 MsG0080048944.01.T01:exon
CAGCATTATTCAGTGATGGT+TGG 0.501524 contig554end:+17143 MsG0080048944.01.T01:exon
GTGTGACATGTGACTCATAA+GGG 0.519310 contig554end:+17112 MsG0080048944.01.T01:exon
TGTTTACAGAAGAAAGCAGT+TGG 0.534384 contig554end:+17049 MsG0080048944.01.T01:exon
TGTTCAGCATTATTCAGTGA+TGG 0.540471 contig554end:+17139 MsG0080048944.01.T01:exon
TTCAATCTTATCGAACTGTA+CGG 0.544210 contig554end:+16999 MsG0080048944.01.T01:exon
TGTGTGACATGTGACTCATA+AGG 0.556044 contig554end:+17111 MsG0080048944.01.T01:exon
TGGTTGGATAAACCTCGTAT+TGG 0.584299 contig554end:+17159 MsG0080048944.01.T01:exon
GTCACACAAAACCAAATGAT+CGG 0.588979 contig554end:-17096 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATGAATATTTCAAAA+AGG + contig554end:11443-11462 MsG0080048944.01.T01:intron 10.0%
!!! AGTTTTATCATTAAATAAAA+AGG - contig554end:13868-13887 None:intergenic 10.0%
!!! TAAGAAAATATTATTTTTTC+GGG + contig554end:11616-11635 MsG0080048944.01.T01:intron 10.0%
!! AACATTTAACAATTCATATA+AGG - contig554end:11883-11902 None:intergenic 15.0%
!! AATATAATAACAACATAGAT+TGG + contig554end:15340-15359 MsG0080048944.01.T01:intron 15.0%
!! TATACTATATATGAAAAATG+TGG + contig554end:12221-12240 MsG0080048944.01.T01:intron 15.0%
!! TTACACATAATAAAAACTAA+AGG - contig554end:14095-14114 None:intergenic 15.0%
!! TTATATGAATTGTTAAATGT+TGG + contig554end:11882-11901 MsG0080048944.01.T01:intron 15.0%
!! TTATTAAGTGGTTAATTATA+GGG + contig554end:11529-11548 MsG0080048944.01.T01:intron 15.0%
!!! AGAAAATAATTATTAGCTTA+TGG - contig554end:12574-12593 None:intergenic 15.0%
!!! ATATAGTACTTATTTTTGAA+AGG - contig554end:16618-16637 None:intergenic 15.0%
!! AAACAAAAACATTTCCTATT+AGG + contig554end:14359-14378 MsG0080048944.01.T01:intron 20.0%
!! AATATTACAATAGATAACTG+AGG + contig554end:16844-16863 MsG0080048944.01.T01:intron 20.0%
!! AGCAATTTGAATATTAATGA+AGG + contig554end:16213-16232 MsG0080048944.01.T01:intron 20.0%
!! ATTATTCAATAACCTGAAAA+AGG + contig554end:11684-11703 MsG0080048944.01.T01:intron 20.0%
!! GTTATTAAGTGGTTAATTAT+AGG + contig554end:11528-11547 MsG0080048944.01.T01:intron 20.0%
!! GTTGGAAATATATAGAAAAA+TGG + contig554end:15233-15252 MsG0080048944.01.T01:intron 20.0%
!! TATTGAATAATTGATGTATC+TGG - contig554end:11675-11694 None:intergenic 20.0%
!! TATTGATAAGAAATTTGTGT+AGG + contig554end:11086-11105 MsG0080048944.01.T01:intron 20.0%
!! TTAACCACAAATTATCAATT+TGG - contig554end:11556-11575 None:intergenic 20.0%
!!! AAAGAACAATTTTTTAGAGA+AGG + contig554end:15277-15296 MsG0080048944.01.T01:intron 20.0%
!!! AAGACATTTTTTTAATACTG+AGG + contig554end:16812-16831 MsG0080048944.01.T01:intron 20.0%
!!! AGACATTTTTTTAATACTGA+GGG + contig554end:16813-16832 MsG0080048944.01.T01:intron 20.0%
!!! ATAGGAAATGTTTTTGTTTT+AGG - contig554end:14358-14377 None:intergenic 20.0%
!!! ATTGATTTTCTTTTTTGAAC+AGG + contig554end:16958-16977 MsG0080048944.01.T01:intron 20.0%
!!! ATTTTTACATTGACTTAACA+TGG + contig554end:12819-12838 MsG0080048944.01.T01:intron 20.0%
!!! GTTACATAGAATTTTTGTTA+TGG + contig554end:13277-13296 MsG0080048944.01.T01:intron 20.0%
!!! TAAGGTTTTGAATTAAATCT+CGG + contig554end:11340-11359 MsG0080048944.01.T01:intron 20.0%
!!! TAGTGTAATGTTTTAATCAT+TGG + contig554end:16441-16460 MsG0080048944.01.T01:intron 20.0%
!!! TATTTTCTTATAATAGTGAC+CGG - contig554end:11606-11625 None:intergenic 20.0%
!!! TCAGTTTTACTATTCTAAAA+AGG - contig554end:13921-13940 None:intergenic 20.0%
!!! TTATATGATCTTCAACATTT+TGG - contig554end:14488-14507 None:intergenic 20.0%
! AAAAACTAAAGGAGATATGT+CGG - contig554end:14084-14103 None:intergenic 25.0%
! AAATCCACTTACATATTGAA+AGG - contig554end:13983-14002 None:intergenic 25.0%
! AAGGAATATTTGCTTATACT+AGG + contig554end:11703-11722 MsG0080048944.01.T01:intron 25.0%
! AAGTCAATGTAAAAATAGCA+TGG - contig554end:12815-12834 None:intergenic 25.0%
! ACATTGTCAGAATTGAAAAA+GGG - contig554end:16363-16382 None:intergenic 25.0%
! ACTCTATTATATAGTCAAGA+TGG - contig554end:11731-11750 None:intergenic 25.0%
! AGAATAGAACAGCTAATTTA+TGG - contig554end:16263-16282 None:intergenic 25.0%
! AGGAATATTTGCTTATACTA+GGG + contig554end:11704-11723 MsG0080048944.01.T01:intron 25.0%
! ATAAAAAAATTCCCCTCATT+TGG - contig554end:15434-15453 None:intergenic 25.0%
! ATACAATTGAACTAGAATGA+AGG - contig554end:16413-16432 None:intergenic 25.0%
! ATATAAACACCAACACTTTA+AGG - contig554end:11937-11956 None:intergenic 25.0%
! ATTACCTATTTGAGAGTTTA+GGG + contig554end:11780-11799 MsG0080048944.01.T01:intron 25.0%
! ATTATCATGTAAAACTAGAG+AGG - contig554end:12767-12786 None:intergenic 25.0%
! CATTGAATAACTTATGTATC+TGG + contig554end:11641-11660 MsG0080048944.01.T01:intron 25.0%
! TAAAAAAATTCCCCTCATTT+GGG - contig554end:15433-15452 None:intergenic 25.0%
! TAATCAGTATTGTTAAGTAG+TGG + contig554end:12358-12377 MsG0080048944.01.T01:intron 25.0%
! TAATTTATGGAACTCATTGA+AGG - contig554end:16250-16269 None:intergenic 25.0%
! TACATTGTCAGAATTGAAAA+AGG - contig554end:16364-16383 None:intergenic 25.0%
! TATATATATCGCCAATGAAT+TGG - contig554end:14326-14345 None:intergenic 25.0%
! TCATACTTTCTGTGATAATT+TGG + contig554end:16337-16356 MsG0080048944.01.T01:intron 25.0%
! TGTTGTTAATTGCAGAAATA+CGG - contig554end:12497-12516 None:intergenic 25.0%
! TTAAAGAACATTCAAATGGA+AGG - contig554end:16764-16783 None:intergenic 25.0%
! TTCATTAGTGATACTTCAAT+GGG + contig554end:15622-15641 MsG0080048944.01.T01:intron 25.0%
! TTTGTTAATGAGCAAATCTT+TGG + contig554end:12969-12988 MsG0080048944.01.T01:intron 25.0%
!! ACCAGAAAATAGATAGTTTT+AGG + contig554end:13837-13856 MsG0080048944.01.T01:intron 25.0%
!! GTTTTATGACTTTTATCTAC+AGG + contig554end:15593-15612 MsG0080048944.01.T01:intron 25.0%
!! TAAGCAAATATTCCTTTTTC+AGG - contig554end:11699-11718 None:intergenic 25.0%
!!! AAAACCTCTTCTTTTGTTTA+TGG - contig554end:12093-12112 None:intergenic 25.0%
!!! AAACCTCTTCTTTTGTTTAT+GGG - contig554end:12092-12111 None:intergenic 25.0%
!!! AATGATTTGGTAAACTATGA+AGG + contig554end:12902-12921 MsG0080048944.01.T01:intron 25.0%
!!! AGTGGAAAAAAGAGTTTTAA+AGG - contig554end:14120-14139 None:intergenic 25.0%
!!! ATTGTTAGGTTTTATAGTTG+AGG - contig554end:16871-16890 None:intergenic 25.0%
!!! ATTTTCTTTTTTGAACAGGA+AGG + contig554end:16962-16981 MsG0080048944.01.T01:intron 25.0%
!!! CCAGAAAATAGATAGTTTTA+GGG + contig554end:13838-13857 MsG0080048944.01.T01:intron 25.0%
!!! CTTTAGTTTTCAATAGAACA+GGG + contig554end:12334-12353 MsG0080048944.01.T01:intron 25.0%
!!! GATTCAGATTTGTTAACATT+AGG - contig554end:12724-12743 None:intergenic 25.0%
!!! TAATGTTTTAATCATTGGAC+AGG + contig554end:16446-16465 MsG0080048944.01.T01:intron 25.0%
!!! TACTTCTAGTTTAAGTTGTA+AGG + contig554end:11322-11341 MsG0080048944.01.T01:intron 25.0%
!!! TCTTTAGTTTTCAATAGAAC+AGG + contig554end:12333-12352 MsG0080048944.01.T01:intron 25.0%
AAAAAAATTCCCCTCATTTG+GGG - contig554end:15432-15451 None:intergenic 30.0%
AAACCAAAATGAATTCCATG+TGG - contig554end:13388-13407 None:intergenic 30.0%
AACCAAAATGAATTCCATGT+GGG - contig554end:13387-13406 None:intergenic 30.0%
AACTACAAATCACACCATTA+AGG - contig554end:15576-15595 None:intergenic 30.0%
AACTTAATTGATACTTCCTC+CGG + contig554end:11584-11603 MsG0080048944.01.T01:intron 30.0%
AATATTAATGAAGGAGCTGA+TGG + contig554end:16222-16241 MsG0080048944.01.T01:intron 30.0%
ACAATGAAAAGGCTATAAGA+CGG - contig554end:13564-13583 None:intergenic 30.0%
ACTGACATGTATCAATGATT+TGG + contig554end:12889-12908 MsG0080048944.01.T01:intron 30.0%
ACTGTAACACTGTTGTATTA+CGG + contig554end:12442-12461 MsG0080048944.01.T01:intron 30.0%
ATGGTATTTGACGAAATCAA+TGG - contig554end:11395-11414 None:intergenic 30.0%
ATGTTGATGTTCTTGTTCTT+GGG - contig554end:13460-13479 None:intergenic 30.0%
CAAAAACATTTCCTATTAGG+TGG + contig554end:14362-14381 MsG0080048944.01.T01:intron 30.0%
CCATTTGAATGTTCTTTAAC+AGG + contig554end:16765-16784 MsG0080048944.01.T01:intron 30.0%
CCTGTTAAAGAACATTCAAA+TGG - contig554end:16768-16787 None:intergenic 30.0%
CTGACCTAAAAACATAAACT+TGG + contig554end:10787-10806 MsG0080048944.01.T01:exon 30.0%
CTTCATTAGTGATACTTCAA+TGG + contig554end:15621-15640 MsG0080048944.01.T01:intron 30.0%
GAACTCAAAAATTGTATTGG+GGG - contig554end:15410-15429 None:intergenic 30.0%
GATTACCTATTTGAGAGTTT+AGG + contig554end:11779-11798 MsG0080048944.01.T01:intron 30.0%
GGAACTCAAAAATTGTATTG+GGG - contig554end:15411-15430 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG - contig554end:15412-15431 None:intergenic 30.0%
GTTATAGCACTAATGCTTAA+GGG + contig554end:13712-13731 MsG0080048944.01.T01:intron 30.0%
TAAACCCTAAACTCTCAAAT+AGG - contig554end:11787-11806 None:intergenic 30.0%
TCTGACCAAAAATACAATAG+CGG - contig554end:13802-13821 None:intergenic 30.0%
TCTGCTTCATGAAAATGAAA+TGG + contig554end:12927-12946 MsG0080048944.01.T01:intron 30.0%
TGAAATCATCAAGAGAAAGT+TGG - contig554end:15711-15730 None:intergenic 30.0%
TGGAAGAAATAGAAGACATT+GGG - contig554end:15492-15511 None:intergenic 30.0%
TTAGTATCCTTAACTGAACT+GGG + contig554end:11028-11047 MsG0080048944.01.T01:intron 30.0%
TTCAATAACAGCAAAAGTCT+AGG + contig554end:14570-14589 MsG0080048944.01.T01:intron 30.0%
TTCAATCTTATCGAACTGTA+CGG + contig554end:16999-17018 MsG0080048944.01.T01:exon 30.0%
TTGATGTTATCATCTCTGAA+TGG + contig554end:11966-11985 MsG0080048944.01.T01:CDS 30.0%
! AATTAGGTTTTTCATGCAAG+TGG - contig554end:13499-13518 None:intergenic 30.0%
! CATTGAAGTATCACTAATGA+AGG - contig554end:15623-15642 None:intergenic 30.0%
! CCCTAAAACTATCTATTTTC+TGG - contig554end:13841-13860 None:intergenic 30.0%
! GAAATTTGTGTAGGTTGTTT+TGG + contig554end:11095-11114 MsG0080048944.01.T01:intron 30.0%
! GAATGAAGTACTTCTGAATT+AGG - contig554end:13515-13534 None:intergenic 30.0%
! GCAACCAAGTTTATGTTTTT+AGG - contig554end:10794-10813 None:intergenic 30.0%
! TACTAACCTTGTCTTTAAAG+TGG - contig554end:11014-11033 None:intergenic 30.0%
! TATTTGAGAGTTTAGGGTTT+AGG + contig554end:11786-11805 MsG0080048944.01.T01:intron 30.0%
!! TGTAGAAGTGCTTAATTGTT+AGG - contig554end:16885-16904 None:intergenic 30.0%
!! TTCTTTTTGGTGATAGAGAA+AGG - contig554end:10932-10951 None:intergenic 30.0%
!!! AACTGCTTTTTTTCGGTTTT+TGG - contig554end:14813-14832 None:intergenic 30.0%
!!! ATTTTGGTTTGTTTGTCGTA+CGG + contig554end:13398-13417 MsG0080048944.01.T01:intron 30.0%
!!! CAAGTTTATGTTTTTAGGTC+AGG - contig554end:10789-10808 None:intergenic 30.0%
!!! TGTTCTCAACTGCTTTTTTT+CGG - contig554end:14820-14839 None:intergenic 30.0%
!!! TTATGTTTTTAGGTCAGGAT+TGG - contig554end:10784-10803 None:intergenic 30.0%
AACACAAAACTGTGTGGATA+TGG + contig554end:15934-15953 MsG0080048944.01.T01:CDS 35.0%
AACCAAAAATCTGAGCAACA+GGG + contig554end:14740-14759 MsG0080048944.01.T01:intron 35.0%
AACCTCAAAAATGCTTTAGC+AGG + contig554end:14406-14425 MsG0080048944.01.T01:intron 35.0%
AAGAAATAGAAGACATTGGG+AGG - contig554end:15489-15508 None:intergenic 35.0%
AAGCAATTCTGCTGTGTTAT+TGG + contig554end:15143-15162 MsG0080048944.01.T01:intron 35.0%
ACAAGAACATCAACATGTGT+TGG + contig554end:13464-13483 MsG0080048944.01.T01:intron 35.0%
ACCAAAATGAATTCCATGTG+GGG - contig554end:13386-13405 None:intergenic 35.0%
ACCTTTATAGATGAGAGACA+GGG + contig554end:16304-16323 MsG0080048944.01.T01:intron 35.0%
AGTTTAGATTCCTTTGTTCG+CGG + contig554end:16646-16665 MsG0080048944.01.T01:exon 35.0%
ATACATGTCAGTATCTCTGT+TGG - contig554end:12881-12900 None:intergenic 35.0%
ATACGGATAGCAGAAAAAAG+CGG - contig554end:12480-12499 None:intergenic 35.0%
ATCGAACTGTACGGTTATTA+AGG + contig554end:17008-17027 MsG0080048944.01.T01:exon 35.0%
CAATAATGCAACTGTGTAAG+TGG + contig554end:13652-13671 MsG0080048944.01.T01:intron 35.0%
CATACAAACAAACCTTTCTC+AGG - contig554end:11294-11313 None:intergenic 35.0%
CATGTTGATGTTCTTGTTCT+TGG - contig554end:13461-13480 None:intergenic 35.0%
CGAAATAGACAACGTTCTAT+AGG + contig554end:14299-14318 MsG0080048944.01.T01:intron 35.0%
CGTTATAGCACTAATGCTTA+AGG + contig554end:13711-13730 MsG0080048944.01.T01:intron 35.0%
CTGAGAAAACAAGAAACAAG+TGG + contig554end:12639-12658 MsG0080048944.01.T01:intron 35.0%
CTGTTTCCATATCAAGATAG+AGG + contig554end:15018-15037 MsG0080048944.01.T01:intron 35.0%
CTTCCCATAAACAAAAGAAG+AGG + contig554end:12086-12105 MsG0080048944.01.T01:intron 35.0%
GAAATCGAATAATCTTGAGC+AGG + contig554end:11227-11246 MsG0080048944.01.T01:CDS 35.0%
GAACATTCAAATGGAAGGAT+AGG - contig554end:16759-16778 None:intergenic 35.0%
GATGAAACAAAAGCCTTCTA+TGG + contig554end:13148-13167 MsG0080048944.01.T01:CDS 35.0%
GCAACCTTTCAATATGTAAG+TGG + contig554end:13976-13995 MsG0080048944.01.T01:intron 35.0%
GGGATAGTAGAACAAAAGTT+GGG + contig554end:13085-13104 MsG0080048944.01.T01:CDS 35.0%
GGGGAACTCAAAAATTGTAT+TGG - contig554end:15413-15432 None:intergenic 35.0%
GTAATACAACAGTGTTACAG+TGG - contig554end:12443-12462 None:intergenic 35.0%
GTCACACAAAACCAAATGAT+CGG - contig554end:17099-17118 None:intergenic 35.0%
GTGGAACAAGGATAGAAATT+AGG - contig554end:13762-13781 None:intergenic 35.0%
GTGGAAGAAATAGAAGACAT+TGG - contig554end:15493-15512 None:intergenic 35.0%
GTTAATGAGCAAATCTTTGG+TGG + contig554end:12972-12991 MsG0080048944.01.T01:intron 35.0%
GTTAGTATCCTTAACTGAAC+TGG + contig554end:11027-11046 MsG0080048944.01.T01:intron 35.0%
GTTATCATCTCTGAATGGAT+GGG + contig554end:11971-11990 MsG0080048944.01.T01:CDS 35.0%
GTTCTATAGGTCCAATTCAT+TGG + contig554end:14312-14331 MsG0080048944.01.T01:intron 35.0%
TACCTTTATAGATGAGAGAC+AGG + contig554end:16303-16322 MsG0080048944.01.T01:intron 35.0%
TATCAAGATAGAGGTTGCAA+TGG + contig554end:15027-15046 MsG0080048944.01.T01:intron 35.0%
TCAAAAATTGTATTGGGGGA+GGG - contig554end:15406-15425 None:intergenic 35.0%
TCATGATTGCATGGAAGAAA+GGG - contig554end:13615-13634 None:intergenic 35.0%
TCGAACTGTACGGTTATTAA+GGG + contig554end:17009-17028 MsG0080048944.01.T01:exon 35.0%
TCTGAACTTGGTTTATGAGT+GGG - contig554end:13539-13558 None:intergenic 35.0%
TGGGATAGTAGAACAAAAGT+TGG + contig554end:13084-13103 MsG0080048944.01.T01:CDS 35.0%
TGTAGATTACTGTACACACT+GGG + contig554end:16114-16133 MsG0080048944.01.T01:CDS 35.0%
TGTCTATTTCGCCAATGAAT+TGG - contig554end:14290-14309 None:intergenic 35.0%
TGTGTACAGTAATCTACACT+AGG - contig554end:16112-16131 None:intergenic 35.0%
TGTTATCATCTCTGAATGGA+TGG + contig554end:11970-11989 MsG0080048944.01.T01:CDS 35.0%
TGTTCAGCATTATTCAGTGA+TGG + contig554end:17139-17158 MsG0080048944.01.T01:exon 35.0%
TGTTGAAGCTACTAAGATGT+CGG + contig554end:11185-11204 MsG0080048944.01.T01:CDS 35.0%
TGTTTACAGAAGAAAGCAGT+TGG + contig554end:17049-17068 MsG0080048944.01.T01:exon 35.0%
TTCACTCTTGCACAATGAAA+AGG - contig554end:13575-13594 None:intergenic 35.0%
TTCATGATTGCATGGAAGAA+AGG - contig554end:13616-13635 None:intergenic 35.0%
TTCTGAACTTGGTTTATGAG+TGG - contig554end:13540-13559 None:intergenic 35.0%
TTCTGCAATTAACAACACTG+AGG + contig554end:12500-12519 MsG0080048944.01.T01:intron 35.0%
TTGAGTAGAAGAAAAAGCTG+TGG - contig554end:14783-14802 None:intergenic 35.0%
TTGCAACCTCTATCTTGATA+TGG - contig554end:15027-15046 None:intergenic 35.0%
TTTCCTGTTTATGCTTACCA+GGG + contig554end:16040-16059 MsG0080048944.01.T01:intron 35.0%
TTTCGTCAAATACCATGACT+AGG + contig554end:11399-11418 MsG0080048944.01.T01:intron 35.0%
TTTCTTATAATAGTGACCGG+AGG - contig554end:11603-11622 None:intergenic 35.0%
! AGCATGGTAATGTGCAAATT+GGG - contig554end:12799-12818 None:intergenic 35.0%
! CAAACACCACTTTAAAGACA+AGG + contig554end:11005-11024 MsG0080048944.01.T01:CDS 35.0%
! CACTTTTATACACTACAGCA+TGG - contig554end:13425-13444 None:intergenic 35.0%
! CTCTCATCTATAAAGGTACA+AGG - contig554end:16301-16320 None:intergenic 35.0%
! GGGACTAGATTGTTATTAAG+TGG + contig554end:11517-11536 MsG0080048944.01.T01:intron 35.0%
! GGGTCCAAATTGATAATTTG+TGG + contig554end:11549-11568 MsG0080048944.01.T01:intron 35.0%
! TAGCATGGTAATGTGCAAAT+TGG - contig554end:12800-12819 None:intergenic 35.0%
! TATAAGACGGATTCTGAACT+TGG - contig554end:13551-13570 None:intergenic 35.0%
!! ACACCATTAAGGCTTTGTTT+GGG - contig554end:15565-15584 None:intergenic 35.0%
!! AGAGAGGTTTTGTGTTATGA+AGG - contig554end:12751-12770 None:intergenic 35.0%
!! ATCTCACTTTAGGCTTTGTT+TGG + contig554end:15174-15193 MsG0080048944.01.T01:intron 35.0%
!! ATTTGATAGTGTCCTAGTCA+TGG - contig554end:11414-11433 None:intergenic 35.0%
!! CTGTGAGATTCAAAAGCATT+CGG + contig554end:16578-16597 MsG0080048944.01.T01:exon 35.0%
!! GGTTTTGTGTTATGAAGGAA+TGG - contig554end:12746-12765 None:intergenic 35.0%
!! TCTCACTTTAGGCTTTGTTT+GGG + contig554end:15175-15194 MsG0080048944.01.T01:intron 35.0%
!! TGTGAGATTCAAAAGCATTC+GGG + contig554end:16579-16598 MsG0080048944.01.T01:exon 35.0%
!! TTTAGGGTTTAGGACTAGTT+TGG + contig554end:11796-11815 MsG0080048944.01.T01:intron 35.0%
!!! AGTGGCTCTATTTTAGTGAA+GGG - contig554end:12691-12710 None:intergenic 35.0%
!!! ATTTTTGAGTTCCCCAAATG+AGG + contig554end:15418-15437 MsG0080048944.01.T01:intron 35.0%
!!! GATCTGAGAGCATTTCTTTT+TGG - contig554end:10945-10964 None:intergenic 35.0%
!!! GCTATTGTATTTTTGGTCAG+AGG + contig554end:13801-13820 MsG0080048944.01.T01:intron 35.0%
!!! TTGGCGTTGCTTTTAATACT+TGG + contig554end:17068-17087 MsG0080048944.01.T01:exon 35.0%
!!! TTTTTAGGTCAGGATTGGTT+TGG - contig554end:10779-10798 None:intergenic 35.0%
!!! TTTTTGAGTTCCCCAAATGA+GGG + contig554end:15419-15438 MsG0080048944.01.T01:intron 35.0%
AAAAGCTGCACATAAAGCAG+AGG + contig554end:12306-12325 MsG0080048944.01.T01:intron 40.0%
AACAGAACACAGAGATAGAG+CGG + contig554end:14666-14685 MsG0080048944.01.T01:intron 40.0%
AACTCAATCTCATGTTCAGC+TGG - contig554end:16079-16098 None:intergenic 40.0%
AATACTTACATCACCCCTGT+TGG - contig554end:12061-12080 None:intergenic 40.0%
AATTTCTGTAGACGTCGTTG+TGG + contig554end:15785-15804 MsG0080048944.01.T01:intron 40.0%
ACAAAACTGTGTGGATATGG+AGG + contig554end:15937-15956 MsG0080048944.01.T01:CDS 40.0%
ACAAGCCAGCACATAATGTA+GGG - contig554end:13318-13337 None:intergenic 40.0%
ACAGAGAACACAAAACTGTG+TGG + contig554end:15928-15947 MsG0080048944.01.T01:CDS 40.0%
ACAGTAATCTACACTAGGAG+CGG - contig554end:16107-16126 None:intergenic 40.0%
ACATTAGGTGAATAGAGCAG+TGG - contig554end:12709-12728 None:intergenic 40.0%
ACCCTGTCTCTCATCTATAA+AGG - contig554end:16308-16327 None:intergenic 40.0%
ACTCCCAAACAAAGCCTTAA+TGG + contig554end:15559-15578 MsG0080048944.01.T01:intron 40.0%
AGAACATCAACATGTGTTGG+TGG + contig554end:13467-13486 MsG0080048944.01.T01:intron 40.0%
AGTCTCCTCTGATGAGATTT+GGG - contig554end:15665-15684 None:intergenic 40.0%
AGTTTATCCGATAGTCTGTG+AGG + contig554end:11496-11515 MsG0080048944.01.T01:intron 40.0%
ATAGCTATAATGCCCATGCA+AGG - contig554end:15999-16018 None:intergenic 40.0%
ATCCTTAACTGAACTGGGTT+TGG + contig554end:11033-11052 MsG0080048944.01.T01:intron 40.0%
ATGAATTCCATGTGGGGATT+AGG - contig554end:13380-13399 None:intergenic 40.0%
ATGTGCAAATTGGGGTAGTT+AGG - contig554end:12790-12809 None:intergenic 40.0%
ATTAGGTGGAGTCTGTTGTA+TGG + contig554end:14376-14395 MsG0080048944.01.T01:intron 40.0%
ATTTGACAACACTGTTCTGC+AGG + contig554end:14263-14282 MsG0080048944.01.T01:intron 40.0%
CAAAACTGTGTGGATATGGA+GGG + contig554end:15938-15957 MsG0080048944.01.T01:CDS 40.0%
CAATACACTATTCGCAACCA+TGG - contig554end:14631-14650 None:intergenic 40.0%
CAGCAAAGTTCATGATTGCA+TGG - contig554end:13624-13643 None:intergenic 40.0%
CAGCATTATTCAGTGATGGT+TGG + contig554end:17143-17162 MsG0080048944.01.T01:exon 40.0%
CAGGTTGTTGAGGTTATTGA+GGG + contig554end:11246-11265 MsG0080048944.01.T01:CDS 40.0%
CATGTGTAGGAGGATTTAAG+AGG - contig554end:16476-16495 None:intergenic 40.0%
CCAAAAGTAGAGGCAATTCA+CGG - contig554end:15053-15072 None:intergenic 40.0%
CTATCCTTGTTCCACTGTAA+GGG + contig554end:13767-13786 MsG0080048944.01.T01:intron 40.0%
CTCAAAAATTGTATTGGGGG+AGG - contig554end:15407-15426 None:intergenic 40.0%
CTGTGATTGCCTTAAAGTGT+TGG + contig554end:11925-11944 MsG0080048944.01.T01:intron 40.0%
CTTCATCCACATCAAGTCAT+AGG + contig554end:15814-15833 MsG0080048944.01.T01:CDS 40.0%
GAACCAAAAATCTGAGCAAC+AGG + contig554end:14739-14758 MsG0080048944.01.T01:intron 40.0%
GAAGGGAAACCATCGTTTAA+TGG + contig554end:16542-16561 MsG0080048944.01.T01:exon 40.0%
GAATGAAGGTCACAGGTTAT+AGG - contig554end:16399-16418 None:intergenic 40.0%
GATAGAAAACTCTCCTCCAA+GGG + contig554end:12661-12680 MsG0080048944.01.T01:intron 40.0%
GATGTTACATTGCCTGAGAA+AGG + contig554end:11279-11298 MsG0080048944.01.T01:CDS 40.0%
GCACTATAGCTCATGTTCAA+TGG - contig554end:14983-15002 None:intergenic 40.0%
GCAGAGGAAATACTATCTAC+AGG + contig554end:13210-13229 MsG0080048944.01.T01:intron 40.0%
GCATTTGTCACCAAAAGTAG+AGG - contig554end:15063-15082 None:intergenic 40.0%
GCTCATATCAACACCATAGA+AGG - contig554end:13164-13183 None:intergenic 40.0%
GGCAATCACAGAATACACAA+AGG - contig554end:11916-11935 None:intergenic 40.0%
GGTGACTATGATCTCACTTT+AGG + contig554end:15164-15183 MsG0080048944.01.T01:intron 40.0%
GGTGGTTTGATGTACATTTC+CGG + contig554end:15959-15978 MsG0080048944.01.T01:CDS 40.0%
GTAATGTGCTGGAAATAGCA+TGG - contig554end:12859-12878 None:intergenic 40.0%
GTAGATTACTGTACACACTG+GGG + contig554end:16115-16134 MsG0080048944.01.T01:CDS 40.0%
GTGGTTTGATGTACATTTCC+GGG + contig554end:15960-15979 MsG0080048944.01.T01:CDS 40.0%
GTGTAGATTACTGTACACAC+TGG + contig554end:16113-16132 MsG0080048944.01.T01:CDS 40.0%
GTGTGACATGTGACTCATAA+GGG + contig554end:17112-17131 MsG0080048944.01.T01:exon 40.0%
GTTTATCCGATAGTCTGTGA+GGG + contig554end:11497-11516 MsG0080048944.01.T01:intron 40.0%
GTTTCCTGTTTATGCTTACC+AGG + contig554end:16039-16058 MsG0080048944.01.T01:intron 40.0%
TAATCTTGAGCAGGTTGTTG+AGG + contig554end:11236-11255 MsG0080048944.01.T01:CDS 40.0%
TACAACAGACTCCACCTAAT+AGG - contig554end:14376-14395 None:intergenic 40.0%
TACAAGCCAGCACATAATGT+AGG - contig554end:13319-13338 None:intergenic 40.0%
TACGCAAAACCTTGATGTTG+CGG + contig554end:11824-11843 MsG0080048944.01.T01:intron 40.0%
TCCTTAACTGAACTGGGTTT+GGG + contig554end:11034-11053 MsG0080048944.01.T01:intron 40.0%
TCTACTATCCCAGTCCTAAT+GGG - contig554end:13076-13095 None:intergenic 40.0%
TCTATCCTTGTTCCACTGTA+AGG + contig554end:13766-13785 MsG0080048944.01.T01:intron 40.0%
TGAACTAGAATGAAGGTCAC+AGG - contig554end:16406-16425 None:intergenic 40.0%
TGCAATCATGAACTTTGCTG+TGG + contig554end:13624-13643 MsG0080048944.01.T01:intron 40.0%
TGGTTGGATAAACCTCGTAT+TGG + contig554end:17159-17178 MsG0080048944.01.T01:exon 40.0%
TGTGTGACATGTGACTCATA+AGG + contig554end:17111-17130 MsG0080048944.01.T01:exon 40.0%
TTCTACTATCCCAGTCCTAA+TGG - contig554end:13077-13096 None:intergenic 40.0%
TTGCATGGGCATTATAGCTA+TGG + contig554end:15998-16017 MsG0080048944.01.T01:intron 40.0%
TTTCTAATGAGTCGCTCGAA+GGG + contig554end:16525-16544 MsG0080048944.01.T01:exon 40.0%
! AAGAAAGGGCTTTTGGATCA+AGG - contig554end:13601-13620 None:intergenic 40.0%
! ACTTGGTTCTTCCGATCATT+TGG + contig554end:17085-17104 MsG0080048944.01.T01:exon 40.0%
! AGAAAGGGCTTTTGGATCAA+GGG - contig554end:13600-13619 None:intergenic 40.0%
! AGCAAATCTTTGGTGGCTTT+CGG + contig554end:12979-12998 MsG0080048944.01.T01:intron 40.0%
! AGCAGCCGCTATTGTATTTT+TGG + contig554end:13794-13813 MsG0080048944.01.T01:intron 40.0%
! ATAGAGTTTAGAGCATACCG+TGG - contig554end:16688-16707 None:intergenic 40.0%
! ATTAGCGTAGTCGACTTCTT+TGG - contig554end:10893-10912 None:intergenic 40.0%
! GAACATCAACATGTGTTGGT+GGG + contig554end:13468-13487 MsG0080048944.01.T01:intron 40.0%
! GAAGTGGGATTCTTGCTATA+TGG + contig554end:11130-11149 MsG0080048944.01.T01:CDS 40.0%
! GATAAACCTCGTATTGGTAC+GGG + contig554end:17165-17184 MsG0080048944.01.T01:exon 40.0%
! GCATGGTAATGTGCAAATTG+GGG - contig554end:12798-12817 None:intergenic 40.0%
! GGATAAACCTCGTATTGGTA+CGG + contig554end:17164-17183 MsG0080048944.01.T01:exon 40.0%
! GTGATTTGTCATAGAGCAGT+TGG + contig554end:14942-14961 MsG0080048944.01.T01:intron 40.0%
! TAGAGTTTAGAGCATACCGT+GGG - contig554end:16687-16706 None:intergenic 40.0%
! TCCCCACATGGAATTCATTT+TGG + contig554end:13382-13401 MsG0080048944.01.T01:intron 40.0%
! TTAGCGTAGTCGACTTCTTT+GGG - contig554end:10892-10911 None:intergenic 40.0%
! TTGGTGATAGAGAAAGGAGT+AGG - contig554end:10926-10945 None:intergenic 40.0%
! TTTTCTAATGAGTCGCTCGA+AGG + contig554end:16524-16543 MsG0080048944.01.T01:exon 40.0%
!! ACACAGCAGAATTGCTTTTG+CGG - contig554end:15140-15159 None:intergenic 40.0%
!! ACACAGTTTTGTGTTCTCTG+TGG - contig554end:15929-15948 None:intergenic 40.0%
!! CACACCATTAAGGCTTTGTT+TGG - contig554end:15566-15585 None:intergenic 40.0%
!! GTCCTGCTAAAGCATTTTTG+AGG - contig554end:14411-14430 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - contig554end:15558-15577 None:intergenic 40.0%
!! TATCTCTGTTGGTAATGTGC+TGG - contig554end:12870-12889 None:intergenic 40.0%
!! TGGTGTTGATATGAGCACTT+TGG + contig554end:13168-13187 MsG0080048944.01.T01:intron 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + contig554end:15182-15201 MsG0080048944.01.T01:intron 40.0%
!!! CAGTGGCTCTATTTTAGTGA+AGG - contig554end:12692-12711 None:intergenic 40.0%
!!! GAGGGTTTTGGAAAAAAGGA+AGG - contig554end:15521-15540 None:intergenic 40.0%
!!! GTGTAGGTTGTTTTGGATGT+TGG + contig554end:11102-11121 MsG0080048944.01.T01:intron 40.0%
!!! TTTTGAGTTCCCCAAATGAG+GGG + contig554end:15420-15439 MsG0080048944.01.T01:intron 40.0%
AAGATGCTCTGACCTTGCAT+GGG + contig554end:15984-16003 MsG0080048944.01.T01:intron 45.0%
ACCCAAACCCAGTTCAGTTA+AGG - contig554end:11038-11057 None:intergenic 45.0%
AGCTGTTTACATCGATGTGC+TGG + contig554end:15096-15115 MsG0080048944.01.T01:intron 45.0%
AGGTCATGTTGAAGTTGGGA+TGG - contig554end:14041-14060 None:intergenic 45.0%
ATAGAAGACATTGGGAGGAG+AGG - contig554end:15484-15503 None:intergenic 45.0%
ATGTCCCTTACAGTGGAACA+AGG - contig554end:13774-13793 None:intergenic 45.0%
ATTTCCCCAATAGCGAAGCT+TGG + contig554end:14183-14202 MsG0080048944.01.T01:intron 45.0%
CAATTGTTGCCGCAACATCA+AGG - contig554end:11836-11855 None:intergenic 45.0%
CAGTCTCCTCTGATGAGATT+TGG - contig554end:15666-15685 None:intergenic 45.0%
CATCAAGTCATAGGAACTGC+TGG + contig554end:15823-15842 MsG0080048944.01.T01:CDS 45.0%
CATGGTTCTTACTCACTCAG+CGG - contig554end:10821-10840 None:intergenic 45.0%
CGTTTAATGGAGGTTGAGCT+TGG + contig554end:16555-16574 MsG0080048944.01.T01:exon 45.0%
CTATCCAAGCTTCGCTATTG+GGG - contig554end:14190-14209 None:intergenic 45.0%
CTCTGATGAGATTTGGGCAT+GGG - contig554end:15659-15678 None:intergenic 45.0%
CTTCGCTATTGGGGAAATTG+TGG - contig554end:14181-14200 None:intergenic 45.0%
GAACAATCCTAATCCCCACA+TGG + contig554end:13370-13389 MsG0080048944.01.T01:intron 45.0%
GAGGAGGTCATGTTGAAGTT+GGG - contig554end:14045-14064 None:intergenic 45.0%
GATAGAGCGGAACAGTGATT+AGG + contig554end:14679-14698 MsG0080048944.01.T01:intron 45.0%
GCAGGTTGTTGAGGTTATTG+AGG + contig554end:11245-11264 MsG0080048944.01.T01:CDS 45.0%
GCAGTTCCTATGACTTGATG+TGG - contig554end:15823-15842 None:intergenic 45.0%
GCATGCTGTTCTAATCTTCG+CGG - contig554end:14715-14734 None:intergenic 45.0%
GCTATCCAAGCTTCGCTATT+GGG - contig554end:14191-14210 None:intergenic 45.0%
GCTCAACCTCCATTAAACGA+TGG - contig554end:16554-16573 None:intergenic 45.0%
GCTGAGTGAGTAAGAACCAT+GGG + contig554end:10820-10839 MsG0080048944.01.T01:exon 45.0%
GGAAAAAAGGAAGGAGCAAG+TGG - contig554end:15512-15531 None:intergenic 45.0%
GGATAGAAAACTCTCCTCCA+AGG + contig554end:12660-12679 MsG0080048944.01.T01:intron 45.0%
GGGAAACCATCGTTTAATGG+AGG + contig554end:16545-16564 MsG0080048944.01.T01:exon 45.0%
GGTTATTGAGGGTTCTGTTG+AGG + contig554end:11257-11276 MsG0080048944.01.T01:CDS 45.0%
GTTCTGCAGGTCCAATTCAT+TGG + contig554end:14276-14295 MsG0080048944.01.T01:intron 45.0%
TAAAAGTTGAAGCCTGCGTG+CGG + contig554end:14595-14614 MsG0080048944.01.T01:intron 45.0%
TAAGATGCTCTGACCTTGCA+TGG + contig554end:15983-16002 MsG0080048944.01.T01:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG - contig554end:15483-15502 None:intergenic 45.0%
TCACCATCACTCACATGTGT+AGG - contig554end:16489-16508 None:intergenic 45.0%
TCATGTTGAAGTTGGGATGG+AGG - contig554end:14038-14057 None:intergenic 45.0%
TCTAGTCCCTCACAGACTAT+CGG - contig554end:11506-11525 None:intergenic 45.0%
TGCAACTGTGTAAGTGGCTT+TGG + contig554end:13658-13677 MsG0080048944.01.T01:intron 45.0%
TGCTATCCAAGCTTCGCTAT+TGG - contig554end:14192-14211 None:intergenic 45.0%
TTTAGTGAAGGGCAAACCCT+TGG - contig554end:12680-12699 None:intergenic 45.0%
! AACTGAACTGGGTTTGGGTT+TGG + contig554end:11039-11058 MsG0080048944.01.T01:intron 45.0%
! ACTGAACTGGGTTTGGGTTT+GGG + contig554end:11040-11059 MsG0080048944.01.T01:intron 45.0%
! AGGAACTGCTGGTCTAGTAA+AGG + contig554end:15834-15853 MsG0080048944.01.T01:CDS 45.0%
! CCGTGAATTGCCTCTACTTT+TGG + contig554end:15050-15069 MsG0080048944.01.T01:intron 45.0%
! CTACATCTGCTTGCTGAAAC+TGG + contig554end:14147-14166 MsG0080048944.01.T01:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + contig554end:15187-15206 MsG0080048944.01.T01:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - contig554end:15206-15187 None:intergenic 45.0%
! GAAAGGGCTTTTGGATCAAG+GGG - contig554end:13599-13618 None:intergenic 45.0%
! TAGCGTAGTCGACTTCTTTG+GGG - contig554end:10891-10910 None:intergenic 45.0%
! TGCATGGAAGAAAGGGCTTT+TGG - contig554end:13608-13627 None:intergenic 45.0%
! TGCCCTGTTGCTCAGATTTT+TGG - contig554end:14745-14764 None:intergenic 45.0%
! TTTGGCAAAGCCTTTTGCTG+AGG + contig554end:13186-13205 MsG0080048944.01.T01:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + contig554end:15186-15205 MsG0080048944.01.T01:intron 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - contig554end:15205-15186 None:intergenic 45.0%
!! TCAAGAGCGCTGTCAAATTG+AGG + contig554end:13688-13707 MsG0080048944.01.T01:intron 45.0%
!! TTAGGTCAGGATTGGTTTGG+CGG - contig554end:10776-10795 None:intergenic 45.0%
!!! AGGGGAGGGTTTTGGAAAAA+AGG - contig554end:15525-15544 None:intergenic 45.0%
!!! GTTGTTTTGGATGTTGGTGC+TGG + contig554end:11108-11127 MsG0080048944.01.T01:CDS 45.0%
!! AAATTAAAATATGTATAAAT+TGG - contig554end:15770-15789 None:intergenic 5.0%
!!! ATAAGAAAATATTATTTTTT+CGG + contig554end:11615-11634 MsG0080048944.01.T01:intron 5.0%
!!! TTTAAAAATATTTATTTTGT+AGG + contig554end:13020-13039 MsG0080048944.01.T01:intron 5.0%
AACTGTGTGGATATGGAGGG+TGG + contig554end:15941-15960 MsG0080048944.01.T01:CDS 50.0%
AGACTCACTGGAAATGGAGG+AGG - contig554end:14061-14080 None:intergenic 50.0%
AGCAGATGTAGCAGCAACAG+TGG - contig554end:14138-14157 None:intergenic 50.0%
AGCTCAAGCAGGTGCAAAGA+AGG + contig554end:11155-11174 MsG0080048944.01.T01:CDS 50.0%
ATCCACATGCGAGCATGACT+AGG - contig554end:13049-13068 None:intergenic 50.0%
ATCCTAGTCATGCTCGCATG+TGG + contig554end:13044-13063 MsG0080048944.01.T01:CDS 50.0%
CCATCACTCACATGTGTAGG+AGG - contig554end:16486-16505 None:intergenic 50.0%
CCATGCCCAAATCTCATCAG+AGG + contig554end:15657-15676 MsG0080048944.01.T01:intron 50.0%
CCTCCTACACATGTGAGTGA+TGG + contig554end:16483-16502 MsG0080048944.01.T01:exon 50.0%
CCTCTGATGAGATTTGGGCA+TGG - contig554end:15660-15679 None:intergenic 50.0%
CGCTGAGTGAGTAAGAACCA+TGG + contig554end:10819-10838 MsG0080048944.01.T01:exon 50.0%
CGTCCCTGGTAAGCATAAAC+AGG - contig554end:16046-16065 None:intergenic 50.0%
GAGATATGTCGGAGACTCAC+TGG - contig554end:14073-14092 None:intergenic 50.0%
GAGCTTCAAGCAGTATCCCA+CGG + contig554end:16668-16687 MsG0080048944.01.T01:exon 50.0%
GCGAAGCTTGGATAGCATTG+TGG + contig554end:14195-14214 MsG0080048944.01.T01:intron 50.0%
GCTATATGGTCAGCTCAAGC+AGG + contig554end:11144-11163 MsG0080048944.01.T01:CDS 50.0%
GCTCTCAGATCGTGTTCGTA+TGG + contig554end:10954-10973 MsG0080048944.01.T01:CDS 50.0%
GGAGGAGGTCATGTTGAAGT+TGG - contig554end:14046-14065 None:intergenic 50.0%
GGCGATTACCAGTCAGCTAT+GGG + contig554end:13106-13125 MsG0080048944.01.T01:CDS 50.0%
GTAATCTACACTAGGAGCGG+TGG - contig554end:16104-16123 None:intergenic 50.0%
GTCAGCCCTACATTATGTGC+TGG + contig554end:13310-13329 MsG0080048944.01.T01:intron 50.0%
GTGCAATGCAAGCAAGCAGT+AGG + contig554end:14914-14933 MsG0080048944.01.T01:intron 50.0%
TAGTCATGCTCGCATGTGGA+TGG + contig554end:13048-13067 MsG0080048944.01.T01:CDS 50.0%
TGACTGTTTGACTGCCACAG+TGG + contig554end:15861-15880 MsG0080048944.01.T01:CDS 50.0%
TGCAAGCAAGCAGTAGGTGT+AGG + contig554end:14920-14939 MsG0080048944.01.T01:intron 50.0%
TGTCGGAGACTCACTGGAAA+TGG - contig554end:14067-14086 None:intergenic 50.0%
TGTTGAAGTTGGGATGGAGG+AGG - contig554end:14035-14054 None:intergenic 50.0%
TTCCTCTATGTCTGCCACTG+TGG - contig554end:15878-15897 None:intergenic 50.0%
TTCCTCTGCTCCTCAGCAAA+AGG - contig554end:13199-13218 None:intergenic 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG + contig554end:15192-15211 MsG0080048944.01.T01:intron 50.0%
! CAAGGTCAGAGCATCTTACC+CGG - contig554end:15981-16000 None:intergenic 50.0%
! GTAGTCGACTTCTTTGGGGA+CGG - contig554end:10887-10906 None:intergenic 50.0%
! TCAACATGTGTTGGTGGGTC+AGG + contig554end:13473-13492 MsG0080048944.01.T01:intron 50.0%
! TGTATTGGGGGAGGGTTTTG+AGG - contig554end:15398-15417 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + contig554end:15185-15204 MsG0080048944.01.T01:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - contig554end:15204-15185 None:intergenic 50.0%
!! GTATTGGGGGAGGGTTTTGA+GGG - contig554end:15397-15416 None:intergenic 50.0%
!! TCAGGATTGGTTTGGCGGTA+GGG - contig554end:10771-10790 None:intergenic 50.0%
!! TGGATGTTGGTGCTGGAAGT+GGG + contig554end:11115-11134 MsG0080048944.01.T01:CDS 50.0%
!! TTGGATGTTGGTGCTGGAAG+TGG + contig554end:11114-11133 MsG0080048944.01.T01:CDS 50.0%
!!! AGGGTTTTGAGGGGTTATGG+AGG - contig554end:15387-15406 None:intergenic 50.0%
!!! GGGTTTTGAGGGGTTATGGA+GGG - contig554end:15386-15405 None:intergenic 50.0%
!!! GTTTTCGGAAGAAGTGCCCA+TGG - contig554end:10839-10858 None:intergenic 50.0%
!!! TATTGGGGGAGGGTTTTGAG+GGG - contig554end:15396-15415 None:intergenic 50.0%
ACATTGGGAGGAGAGGGCTT+TGG - contig554end:15477-15496 None:intergenic 55.0%
ACCAGTCAGCTATGGGCGAT+TGG + contig554end:13113-13132 MsG0080048944.01.T01:CDS 55.0%
ACTTCTTCCGAAAACGCCGC+CGG + contig554end:10844-10863 MsG0080048944.01.T01:CDS 55.0%
AGTGAAGGGCAAACCCTTGG+AGG - contig554end:12677-12696 None:intergenic 55.0%
CGGAGACTCACTGGAAATGG+AGG - contig554end:14064-14083 None:intergenic 55.0%
CGTGCGGTTGAATGATGCCA+TGG + contig554end:14611-14630 MsG0080048944.01.T01:intron 55.0%
GAAATGTGCGCTAGCTCAGC+TGG + contig554end:14878-14897 MsG0080048944.01.T01:intron 55.0%
GCATGTGGATGGCACCCATT+AGG + contig554end:13059-13078 MsG0080048944.01.T01:CDS 55.0%
GCTTGAAGCTCCGCGAACAA+AGG - contig554end:16659-16678 None:intergenic 55.0%
GGATGGCACCCATTAGGACT+GGG + contig554end:13065-13084 MsG0080048944.01.T01:CDS 55.0%
GGCTGCTATGTCCCTTACAG+TGG - contig554end:13781-13800 None:intergenic 55.0%
GGGCGATTACCAGTCAGCTA+TGG + contig554end:13105-13124 MsG0080048944.01.T01:CDS 55.0%
GGTTCTTACTCACTCAGCGG+TGG - contig554end:10818-10837 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG + contig554end:15191-15210 MsG0080048944.01.T01:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - contig554end:15210-15191 None:intergenic 55.0%
TCATATGTGCTCGTGACCGC+TGG + contig554end:12029-12048 MsG0080048944.01.T01:CDS 55.0%
TGCCACAGTGGCAGACATAG+AGG + contig554end:15873-15892 MsG0080048944.01.T01:CDS 55.0%
TGCTTACCAGGGACGAAGTG+AGG + contig554end:16051-16070 MsG0080048944.01.T01:intron 55.0%
TGGATGGCACCCATTAGGAC+TGG + contig554end:13064-13083 MsG0080048944.01.T01:CDS 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - contig554end:15209-15190 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - contig554end:15548-15567 None:intergenic 55.0%
! AGCCTTTTGCTGAGGAGCAG+AGG + contig554end:13194-13213 MsG0080048944.01.T01:intron 55.0%
!! ACCGCTGGCTCAAACCAACA+GGG + contig554end:12044-12063 MsG0080048944.01.T01:CDS 55.0%
!! AGAGCAGTTGGTGTTGCACG+AGG + contig554end:14954-14973 MsG0080048944.01.T01:intron 55.0%
!! GTCAGGATTGGTTTGGCGGT+AGG - contig554end:10772-10791 None:intergenic 55.0%
!!! GGGAGGGTTTTGAGGGGTTA+TGG - contig554end:15390-15409 None:intergenic 55.0%
CTGGATCCTCACTTCGTCCC+TGG - contig554end:16060-16079 None:intergenic 60.0%
CTGTACACACTGGGGTCAGC+AGG + contig554end:16123-16142 MsG0080048944.01.T01:CDS 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG + contig554end:15197-15216 MsG0080048944.01.T01:intron 60.0%
GCCAATCGCCCATAGCTGAC+TGG - contig554end:13117-13136 None:intergenic 60.0%
GGAGTTTGGAGGGGAAGGGA+GGG + contig554end:15196-15215 MsG0080048944.01.T01:intron 60.0%
GGCATCATTCAACCGCACGC+AGG - contig554end:14610-14629 None:intergenic 60.0%
TGCGCTAGCTCAGCTGGACT+GGG + contig554end:14884-14903 MsG0080048944.01.T01:intron 60.0%
! GTCGACTTCTTTGGGGACGG+CGG - contig554end:10884-10903 None:intergenic 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG - contig554end:15474-15493 None:intergenic 60.0%
!! CCCCTGTTGGTTTGAGCCAG+CGG - contig554end:12048-12067 None:intergenic 60.0%
!! CCGCTGGCTCAAACCAACAG+GGG + contig554end:12045-12064 MsG0080048944.01.T01:CDS 60.0%
!! GACCGCTGGCTCAAACCAAC+AGG + contig554end:12043-12062 MsG0080048944.01.T01:CDS 60.0%
GAAGGGAGGGGAGGGCTTTG+GGG + contig554end:15209-15228 MsG0080048944.01.T01:intron 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG - contig554end:15543-15562 None:intergenic 65.0%
GCGCTAGCTCAGCTGGACTG+GGG + contig554end:14885-14904 MsG0080048944.01.T01:intron 65.0%
GGAAGGGAGGGGAGGGCTTT+GGG + contig554end:15208-15227 MsG0080048944.01.T01:intron 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG - contig554end:15544-15563 None:intergenic 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG + contig554end:15195-15214 MsG0080048944.01.T01:intron 65.0%
GTGCGCTAGCTCAGCTGGAC+TGG + contig554end:14883-14902 MsG0080048944.01.T01:intron 65.0%
TCTTCCGAAAACGCCGCCGG+TGG + contig554end:10847-10866 MsG0080048944.01.T01:CDS 65.0%
TTGGAGGGGAAGGGAGGGGA+GGG + contig554end:15201-15220 MsG0080048944.01.T01:intron 65.0%
TTTGGAGGGGAAGGGAGGGG+AGG + contig554end:15200-15219 MsG0080048944.01.T01:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG + contig554end:15210-15229 MsG0080048944.01.T01:intron 65.0%
GGGAAGGGAGGGGAGGGCTT+TGG + contig554end:15207-15226 MsG0080048944.01.T01:intron 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG - contig554end:15545-15564 None:intergenic 70.0%
TCCGAAAACGCCGCCGGTGG+TGG + contig554end:10850-10869 MsG0080048944.01.T01:CDS 70.0%
TTGGAGGGGAGGGGAGGGGA+GGG - contig554end:15539-15558 None:intergenic 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG - contig554end:15540-15559 None:intergenic 70.0%
! CTTTGGGGACGGCGGTGCCT+CGG - contig554end:10876-10895 None:intergenic 70.0%
! GCCACCACCGGCGGCGTTTT+CGG - contig554end:10854-10873 None:intergenic 70.0%
! GGGAGGGGAGGGGAGGGTTT+TGG - contig554end:15533-15552 None:intergenic 70.0%
!! AGGGAGGGGAGGGCTTTGGG+GGG + contig554end:15211-15230 MsG0080048944.01.T01:intron 70.0%
!! AGGGGAGGGCTTTGGGGGGT+TGG + contig554end:15215-15234 MsG0080048944.01.T01:intron 70.0%
! GGCGGTGCCTCGGCCACCAC+CGG - contig554end:10866-10885 None:intergenic 80.0%
! GGTGCCTCGGCCACCACCGG+CGG - contig554end:10863-10882 None:intergenic 80.0%
!! AACGCCGCCGGTGGTGGCCG+AGG + contig554end:10856-10875 MsG0080048944.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
contig554end gene 10766 17184 10766 ID=MsG0080048944.01;
contig554end mRNA 10766 17184 10766 ID=MsG0080048944.01.T01;Parent=MsG0080048944.01
contig554end exon 10766 11026 10766 ID=MsG0080048944.01.T01.exon;Parent=MsG0080048944.01.T01
contig554end CDS 10838 11026 10838 ID=MsG0080048944.01.T01.cds;Parent=MsG0080048944.01.T01
contig554end CDS 11108 11300 11108 ID=MsG0080048944.01.T01.cds;Parent=MsG0080048944.01.T01
contig554end exon 11108 11300 11108 ID=MsG0080048944.01.T01.exon;Parent=MsG0080048944.01.T01
contig554end CDS 11966 12071 11966 ID=MsG0080048944.01.T01.cds;Parent=MsG0080048944.01.T01
contig554end exon 11966 12071 11966 ID=MsG0080048944.01.T01.exon;Parent=MsG0080048944.01.T01
contig554end CDS 13042 13169 13042 ID=MsG0080048944.01.T01.cds;Parent=MsG0080048944.01.T01
contig554end exon 13042 13169 13042 ID=MsG0080048944.01.T01.exon;Parent=MsG0080048944.01.T01
contig554end CDS 14078 14097 14078 ID=MsG0080048944.01.T01.cds;Parent=MsG0080048944.01.T01
contig554end exon 14078 14097 14078 ID=MsG0080048944.01.T01.exon;Parent=MsG0080048944.01.T01
contig554end CDS 14601 14611 14601 ID=MsG0080048944.01.T01.cds;Parent=MsG0080048944.01.T01
contig554end exon 14601 14611 14601 ID=MsG0080048944.01.T01.exon;Parent=MsG0080048944.01.T01
contig554end CDS 14725 14734 14725 ID=MsG0080048944.01.T01.cds;Parent=MsG0080048944.01.T01
contig554end exon 14725 14734 14725 ID=MsG0080048944.01.T01.exon;Parent=MsG0080048944.01.T01
contig554end CDS 15594 15614 15594 ID=MsG0080048944.01.T01.cds;Parent=MsG0080048944.01.T01
contig554end exon 15594 15614 15594 ID=MsG0080048944.01.T01.exon;Parent=MsG0080048944.01.T01
contig554end CDS 15796 15981 15796 ID=MsG0080048944.01.T01.cds;Parent=MsG0080048944.01.T01
contig554end exon 15796 15981 15796 ID=MsG0080048944.01.T01.exon;Parent=MsG0080048944.01.T01
contig554end CDS 16061 16144 16061 ID=MsG0080048944.01.T01.cds;Parent=MsG0080048944.01.T01
contig554end exon 16061 16144 16061 ID=MsG0080048944.01.T01.exon;Parent=MsG0080048944.01.T01
contig554end CDS 16468 16644 16468 ID=MsG0080048944.01.T01.cds;Parent=MsG0080048944.01.T01
contig554end exon 16468 16689 16468 ID=MsG0080048944.01.T01.exon;Parent=MsG0080048944.01.T01
contig554end exon 16980 17184 16980 ID=MsG0080048944.01.T01.exon;Parent=MsG0080048944.01.T01
Gene Sequence

>MsG0080048944.01.T01

ATGGGCACTTCTTCCGAAAACGCCGCCGGTGGTGGCCGAGGCACCGCCGTCCCCAAAGAAGTCGACTACGCTAATTACTTTTGCACCTACTCCTTTCTCTATCACCAAAAAGAAATGCTCTCAGATCGTGTTCGTATGGATGCTTACTTCAACGCTGTTTTTGAAAACAAACACCACTTTAAAGACAAGGTTGTTTTGGATGTTGGTGCTGGAAGTGGGATTCTTGCTATATGGTCAGCTCAAGCAGGTGCAAAGAAGGTTTATGCTGTTGAAGCTACTAAGATGTCGGAACATGCTCGTGCGCTTGTGAAATCGAATAATCTTGAGCAGGTTGTTGAGGTTATTGAGGGTTCTGTTGAGGATGTTACATTGCCTGAGAAAGTTGATGTTATCATCTCTGAATGGATGGGTTATTTTCTTTTGCGAGAATCTATGTTTGATTCTGTCATATGTGCTCGTGACCGCTGGCTCAAACCAACAGGGGTGATGTATCCTAGTCATGCTCGCATGTGGATGGCACCCATTAGGACTGGGATAGTAGAACAAAAGTTGGGCGATTACCAGTCAGCTATGGGCGATTGGCACAACTTTGTCGATGAAACAAAAGCCTTCTATGTCTCCGACATATCTCCTTTATTGAAGCCTGCAACAGCATGCTTTTATGACTTTTATCTACAGACGTCGTTGTGGAGCAATCTTCATCCACATCAAGTCATAGGAACTGCTGGTCTAGTAAAGGAAATTGACTGTTTGACTGCCACAGTGGCAGACATAGAGGAAGTCAGATCAAACTTTTCTCTGTCAATAACCACAGAGAACACAAAACTGTGTGGATATGGAGGGTGGTTTGATGTACATTTCCGGGGACGAAGTGAGGATCCAGCTGAACATGAGATTGAGTTAACCACCGCTCCTAGTGTAGATTACTGTACACACTGGGGTCAGCAGGTTTTCCTCTTAAATCCTCCTACACATGTGAGTGATGGTGATGAGTTAACTGTTAATTTTCTAATGAGTCGCTCGAAGGGAAACCATCGTTTAATGGAGGTTGAGCTTGGCTGTGAGATTCAAAAGCATTCGGGCAAGCTTGCTACACCTTTCAAAAATAAGTACTATATTGAATGA
Protein sequence

>MsG0080048944.01.T01

MGTSSENAAGGGRGTAVPKEVDYANYFCTYSFLYHQKEMLSDRVRMDAYFNAVFENKHHFKDKVVLDVGAGSGILAIWSAQAGAKKVYAVEATKMSEHARALVKSNNLEQVVEVIEGSVEDVTLPEKVDVIISEWMGYFLLRESMFDSVICARDRWLKPTGVMYPSHARMWMAPIRTGIVEQKLGDYQSAMGDWHNFVDETKAFYVSDISPLLKPATACFYDFYLQTSLWSNLHPHQVIGTAGLVKEIDCLTATVADIEEVRSNFSLSITTENTKLCGYGGWFDVHFRGRSEDPAEHEIELTTAPSVDYCTHWGQQVFLLNPPTHVSDGDELTVNFLMSRSKGNHRLMEVELGCEIQKHSGKLATPFKNKYYIE*