AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023149.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023149.01.T01 MTR_8g088060 100.000 155 0 0 1 155 1 155 5.80e-114 319
MsG0480023149.01.T01 MTR_5g033960 99.355 155 1 0 1 155 1 155 2.24e-113 318
MsG0480023149.01.T01 MTR_7g105080 100.000 76 0 0 1 76 1 76 1.82e-49 155
MsG0480023149.01.T01 MTR_3g092130 100.000 76 0 0 1 76 1 76 1.82e-49 155
MsG0480023149.01.T01 MTR_1g059690 100.000 76 0 0 1 76 1 76 1.82e-49 155
MsG0480023149.01.T01 MTR_3g092130 100.000 76 0 0 1 76 1 76 2.45e-49 155
MsG0480023149.01.T01 MTR_5g092700 98.701 77 1 0 1 77 1 77 2.64e-49 155
MsG0480023149.01.T01 MTR_5g092700 62.162 74 28 0 3 76 79 152 5.31e-26 96.7
MsG0480023149.01.T01 MTR_4g073580 98.701 77 1 0 1 77 1 77 2.64e-49 155
MsG0480023149.01.T01 MTR_4g073580 62.162 74 28 0 3 76 79 152 5.31e-26 96.7
MsG0480023149.01.T01 MTR_4g073580 98.701 77 1 0 1 77 1 77 1.06e-48 155
MsG0480023149.01.T01 MTR_4g073580 44.231 104 28 1 3 76 79 182 1.78e-19 80.9
MsG0480023149.01.T01 MTR_7g116360 97.436 78 2 0 1 78 1 78 1.70e-48 156
MsG0480023149.01.T01 MTR_7g116360 97.436 78 2 0 1 78 77 154 1.70e-48 156
MsG0480023149.01.T01 MTR_7g116360 100.000 76 0 0 1 76 153 228 2.00e-48 156
MsG0480023149.01.T01 MTR_4g088485 97.436 78 2 0 1 78 1 78 1.87e-48 155
MsG0480023149.01.T01 MTR_4g088485 100.000 76 0 0 1 76 138 213 2.28e-48 155
MsG0480023149.01.T01 MTR_4g088485 78.205 78 2 1 1 78 77 139 1.54e-33 117
MsG0480023149.01.T01 MTR_1g066390 98.701 77 1 0 1 77 153 229 2.34e-48 156
MsG0480023149.01.T01 MTR_1g066390 97.436 78 2 0 1 78 1 78 2.49e-48 156
MsG0480023149.01.T01 MTR_1g066390 97.436 78 2 0 1 78 77 154 2.49e-48 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 1 78 4.85e-48 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 77 154 4.85e-48 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 153 230 4.85e-48 156
MsG0480023149.01.T01 MTR_4g080920 96.154 78 3 0 1 78 77 154 6.06e-48 155
MsG0480023149.01.T01 MTR_4g080920 96.154 78 3 0 1 78 1 78 8.87e-48 154
MsG0480023149.01.T01 MTR_4g080920 68.831 77 24 0 1 77 153 229 2.15e-29 107
MsG0480023149.01.T01 MTR_6g061930 97.436 78 2 0 1 78 1 78 1.16e-47 156
MsG0480023149.01.T01 MTR_6g061930 97.436 78 2 0 1 78 77 154 1.16e-47 156
MsG0480023149.01.T01 MTR_6g061930 100.000 76 0 0 1 76 214 289 1.41e-47 155
MsG0480023149.01.T01 MTR_6g061930 75.641 78 4 1 1 78 153 215 6.25e-31 113
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 1 78 1.40e-47 156
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 77 154 1.40e-47 156
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 153 230 1.40e-47 156
MsG0480023149.01.T01 MTR_4g081010 100.000 76 0 0 1 76 229 304 1.65e-47 156
MsG0480023149.01.T01 MTR_7g116360 97.436 78 2 0 1 78 49 126 1.55e-47 155
MsG0480023149.01.T01 MTR_7g116360 97.436 78 2 0 1 78 125 202 1.55e-47 155
MsG0480023149.01.T01 MTR_7g116360 100.000 76 0 0 1 76 201 276 1.82e-47 155
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 1 78 1.69e-47 155
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 77 154 1.69e-47 155
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 153 230 1.69e-47 155
MsG0480023149.01.T01 MTR_8g081020 97.436 78 2 0 1 78 1 78 7.32e-47 156
MsG0480023149.01.T01 MTR_8g081020 97.436 78 2 0 1 78 77 154 7.32e-47 156
MsG0480023149.01.T01 MTR_8g081020 97.436 78 2 0 1 78 153 230 7.32e-47 156
MsG0480023149.01.T01 MTR_8g081020 97.436 78 2 0 1 78 229 306 7.32e-47 156
MsG0480023149.01.T01 MTR_8g081020 100.000 76 0 0 1 76 305 380 8.50e-47 156
MsG0480023149.01.T01 MTR_4g091580 97.436 78 2 0 1 78 1 78 7.56e-47 156
MsG0480023149.01.T01 MTR_4g091580 97.436 78 2 0 1 78 77 154 7.56e-47 156
MsG0480023149.01.T01 MTR_4g091580 97.436 78 2 0 1 78 153 230 7.56e-47 156
MsG0480023149.01.T01 MTR_4g091580 100.000 76 0 0 1 76 305 380 8.87e-47 156
MsG0480023149.01.T01 MTR_4g091580 96.154 78 3 0 1 78 229 306 2.11e-46 155
MsG0480023149.01.T01 MTR_4g080797 97.436 78 2 0 1 78 1 78 7.64e-47 156
MsG0480023149.01.T01 MTR_4g080797 97.436 78 2 0 1 78 77 154 7.64e-47 156
MsG0480023149.01.T01 MTR_4g080797 97.436 78 2 0 1 78 153 230 7.64e-47 156
MsG0480023149.01.T01 MTR_4g080797 97.436 78 2 0 1 78 229 306 7.64e-47 156
MsG0480023149.01.T01 MTR_4g080797 100.000 76 0 0 1 76 305 380 8.87e-47 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 1 78 7.64e-47 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 77 154 7.64e-47 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 153 230 7.64e-47 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 229 306 7.64e-47 156
MsG0480023149.01.T01 MTR_8g018230 100.000 76 0 0 1 76 305 380 8.87e-47 156
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 1 78 7.80e-47 156
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 77 154 7.80e-47 156
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 153 230 7.80e-47 156
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 229 306 7.80e-47 156
MsG0480023149.01.T01 MTR_4g081010 100.000 76 0 0 1 76 305 380 9.16e-47 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 1 78 3.15e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 77 154 3.15e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 153 230 3.15e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 229 306 3.15e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 305 382 3.15e-46 156
MsG0480023149.01.T01 MTR_8g018230 100.000 76 0 0 1 76 381 456 3.65e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 1 78 3.15e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 77 154 3.15e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 153 230 3.15e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 229 306 3.15e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 305 382 3.15e-46 156
MsG0480023149.01.T01 MTR_8g018230 100.000 76 0 0 1 76 381 456 3.65e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 1 78 9.84e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 77 154 9.84e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 153 230 9.84e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 229 306 9.84e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 305 382 9.84e-46 156
MsG0480023149.01.T01 MTR_8g018230 97.436 78 2 0 1 78 381 458 9.84e-46 156
MsG0480023149.01.T01 MTR_8g018230 100.000 76 0 0 1 76 457 532 1.14e-45 156
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 1 78 9.94e-46 156
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 77 154 9.94e-46 156
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 153 230 9.94e-46 156
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 229 306 9.94e-46 156
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 305 382 9.94e-46 156
MsG0480023149.01.T01 MTR_4g081010 97.436 78 2 0 1 78 381 458 9.94e-46 156
MsG0480023149.01.T01 MTR_4g081010 100.000 76 0 0 1 76 457 532 1.15e-45 156
MsG0480023149.01.T01 MTR_4g091580 97.436 78 2 0 1 78 1 78 1.00e-45 156
MsG0480023149.01.T01 MTR_4g091580 97.436 78 2 0 1 78 77 154 1.00e-45 156
MsG0480023149.01.T01 MTR_4g091580 97.436 78 2 0 1 78 153 230 1.00e-45 156
MsG0480023149.01.T01 MTR_4g091580 97.436 78 2 0 1 78 229 306 1.00e-45 156
MsG0480023149.01.T01 MTR_4g091580 97.436 78 2 0 1 78 381 458 1.00e-45 156
MsG0480023149.01.T01 MTR_4g091580 100.000 76 0 0 1 76 457 532 1.17e-45 156
MsG0480023149.01.T01 MTR_4g091580 94.872 78 4 0 1 78 305 382 3.29e-44 152
MsG0480023149.01.T01 MTR_4g088495 97.436 78 2 0 1 78 77 154 8.11e-45 156
MsG0480023149.01.T01 MTR_4g088495 97.436 78 2 0 1 78 153 230 8.11e-45 156
MsG0480023149.01.T01 MTR_4g088495 97.436 78 2 0 1 78 229 306 8.11e-45 156
MsG0480023149.01.T01 MTR_4g088495 97.436 78 2 0 1 78 305 382 8.11e-45 156
MsG0480023149.01.T01 MTR_4g088495 97.436 78 2 0 1 78 381 458 8.11e-45 156
MsG0480023149.01.T01 MTR_4g088495 97.436 78 2 0 1 78 457 534 8.11e-45 156
MsG0480023149.01.T01 MTR_4g088495 97.436 78 2 0 1 78 533 610 8.11e-45 156
MsG0480023149.01.T01 MTR_4g088495 97.436 78 2 0 1 78 609 686 8.11e-45 156
MsG0480023149.01.T01 MTR_4g088495 97.436 78 2 0 1 78 685 762 8.11e-45 156
MsG0480023149.01.T01 MTR_4g088495 100.000 76 0 0 1 76 761 836 9.40e-45 156
MsG0480023149.01.T01 MTR_4g088495 96.154 78 3 0 1 78 1 78 1.54e-43 153
MsG0480023149.01.T01 MTR_8g479250 94.872 78 4 0 1 78 141 218 2.34e-37 130
MsG0480023149.01.T01 MTR_8g479250 76.389 72 6 1 1 72 217 277 2.04e-26 101
MsG0480023149.01.T01 MTR_8g479250 100.000 41 0 0 1 41 1 41 2.67e-20 85.1
MsG0480023149.01.T01 MTR_8g479250 88.889 36 4 0 43 78 107 142 3.22e-14 68.6
MsG0480023149.01.T01 MTR_1g046640 71.053 76 22 0 1 76 240 315 5.73e-28 105
MsG0480023149.01.T01 MTR_5g076810 68.831 77 23 1 1 76 194 270 1.27e-27 103
MsG0480023149.01.T01 MTR_5g076660 69.863 73 22 0 1 73 266 338 8.56e-27 103
MsG0480023149.01.T01 MTR_5g067400 68.421 76 24 0 1 76 241 316 1.77e-25 99.4
MsG0480023149.01.T01 MTR_5g061310 60.000 75 30 0 1 75 2 76 1.15e-24 90.9
MsG0480023149.01.T01 MTR_5g076370 64.384 73 26 0 1 73 267 339 8.33e-23 92.4
MsG0480023149.01.T01 MTR_5g076505 61.333 75 29 0 1 75 240 314 8.67e-23 92.0
MsG0480023149.01.T01 MTR_2g038430 61.333 75 29 0 1 75 268 342 8.89e-23 92.4
MsG0480023149.01.T01 MTR_5g076720 65.333 75 26 0 1 75 315 389 4.12e-22 91.3
MsG0480023149.01.T01 MTR_1g046650 57.895 76 32 0 1 76 171 246 4.36e-22 89.0
MsG0480023149.01.T01 MTR_1g046650 57.895 76 32 0 1 76 240 315 6.79e-22 89.7
MsG0480023149.01.T01 MTR_1g046650 57.895 76 32 0 1 76 240 315 8.35e-22 89.4
MsG0480023149.01.T01 MTR_1g046650 57.895 76 32 0 1 76 271 346 1.24e-21 89.4
MsG0480023149.01.T01 MTR_5g076740 59.211 76 30 1 1 75 86 161 2.50e-21 85.1
MsG0480023149.01.T01 MTR_2g038420 60.000 75 30 0 1 75 260 334 2.53e-21 88.2
MsG0480023149.01.T01 MTR_7g094390 58.667 75 31 0 1 75 402 476 7.54e-20 85.1
MsG0480023149.01.T01 MTR_5g076520 57.333 75 31 1 1 74 244 318 1.03e-18 81.3
MsG0480023149.01.T01 MTR_7g024290 60.526 76 29 1 1 75 241 316 2.15e-18 80.1
MsG0480023149.01.T01 MTR_5g061290 53.333 75 35 0 1 75 252 326 1.53e-17 77.8
MsG0480023149.01.T01 MTR_4g009980 55.224 67 30 0 9 75 4 70 1.68e-17 72.4
MsG0480023149.01.T01 MTR_5g076350 48.684 76 38 1 1 75 8 83 3.67e-15 67.0
MsG0480023149.01.T01 MTR_5g076780 58.333 60 25 0 15 74 4 63 8.30e-15 65.5
MsG0480023149.01.T01 MTR_5g076760 58.621 58 24 0 10 67 4 61 8.44e-15 65.9
MsG0480023149.01.T01 MTR_5g076340 50.649 77 36 2 1 75 9 85 2.27e-14 64.7
MsG0480023149.01.T01 MTR_4g080783 41.176 85 46 1 44 124 7 91 2.52e-12 59.7
MsG0480023149.01.T01 MTR_4g070200 56.140 57 21 2 45 101 17 69 8.59e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023149.01.T01 AT2G47110 96.129 155 6 0 1 155 1 155 1.93e-108 305
MsG0480023149.01.T01 AT2G47110 96.129 155 6 0 1 155 1 155 1.93e-108 305
MsG0480023149.01.T01 AT3G62250 96.711 152 5 0 1 152 1 152 4.49e-108 305
MsG0480023149.01.T01 AT1G23410 91.558 154 13 0 1 154 1 154 2.65e-91 262
MsG0480023149.01.T01 AT3G52590 100.000 76 0 0 1 76 1 76 1.82e-49 155
MsG0480023149.01.T01 AT2G36170 100.000 76 0 0 1 76 1 76 1.82e-49 155
MsG0480023149.01.T01 AT4G05050 97.436 78 2 0 1 78 1 78 2.23e-49 156
MsG0480023149.01.T01 AT4G05050 100.000 76 0 0 1 76 77 152 2.62e-49 155
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 2.23e-49 156
MsG0480023149.01.T01 AT4G05320 100.000 76 0 0 1 76 77 152 2.62e-49 155
MsG0480023149.01.T01 AT2G35635 98.701 77 1 0 1 77 1 77 2.76e-49 155
MsG0480023149.01.T01 AT2G35635 62.162 74 28 0 3 76 79 152 1.74e-25 95.5
MsG0480023149.01.T01 AT1G31340 98.701 77 1 0 1 77 1 77 4.17e-49 155
MsG0480023149.01.T01 AT1G31340 63.514 74 27 0 3 76 79 152 1.49e-26 98.2
MsG0480023149.01.T01 AT4G05050 97.436 78 2 0 1 78 1 78 1.78e-48 156
MsG0480023149.01.T01 AT4G05050 97.436 78 2 0 1 78 77 154 1.78e-48 156
MsG0480023149.01.T01 AT4G05050 100.000 76 0 0 1 76 153 228 2.09e-48 156
MsG0480023149.01.T01 AT4G05050 97.436 78 2 0 1 78 1 78 1.78e-48 156
MsG0480023149.01.T01 AT4G05050 97.436 78 2 0 1 78 77 154 1.78e-48 156
MsG0480023149.01.T01 AT4G05050 100.000 76 0 0 1 76 153 228 2.09e-48 156
MsG0480023149.01.T01 AT4G05050 97.436 78 2 0 1 78 1 78 1.78e-48 156
MsG0480023149.01.T01 AT4G05050 97.436 78 2 0 1 78 77 154 1.78e-48 156
MsG0480023149.01.T01 AT4G05050 100.000 76 0 0 1 76 153 228 2.09e-48 156
MsG0480023149.01.T01 AT4G02890 97.436 78 2 0 1 78 1 78 1.78e-48 156
MsG0480023149.01.T01 AT4G02890 97.436 78 2 0 1 78 77 154 1.78e-48 156
MsG0480023149.01.T01 AT4G02890 100.000 76 0 0 1 76 153 228 2.09e-48 156
MsG0480023149.01.T01 AT4G02890 97.436 78 2 0 1 78 1 78 1.78e-48 156
MsG0480023149.01.T01 AT4G02890 97.436 78 2 0 1 78 77 154 1.78e-48 156
MsG0480023149.01.T01 AT4G02890 100.000 76 0 0 1 76 153 228 2.09e-48 156
MsG0480023149.01.T01 AT1G55060 96.154 78 3 0 1 78 77 154 6.73e-48 155
MsG0480023149.01.T01 AT1G55060 96.104 77 3 0 1 77 153 229 5.97e-46 150
MsG0480023149.01.T01 AT1G55060 84.615 78 12 0 1 78 1 78 1.18e-41 139
MsG0480023149.01.T01 AT5G03240 98.701 77 1 0 1 77 229 305 8.40e-48 157
MsG0480023149.01.T01 AT5G03240 97.436 78 2 0 1 78 1 78 1.31e-47 156
MsG0480023149.01.T01 AT5G03240 97.436 78 2 0 1 78 77 154 1.31e-47 156
MsG0480023149.01.T01 AT5G03240 97.436 78 2 0 1 78 153 230 1.31e-47 156
MsG0480023149.01.T01 AT5G03240 98.701 77 1 0 1 77 229 305 8.40e-48 157
MsG0480023149.01.T01 AT5G03240 97.436 78 2 0 1 78 1 78 1.31e-47 156
MsG0480023149.01.T01 AT5G03240 97.436 78 2 0 1 78 77 154 1.31e-47 156
MsG0480023149.01.T01 AT5G03240 97.436 78 2 0 1 78 153 230 1.31e-47 156
MsG0480023149.01.T01 AT5G03240 98.701 77 1 0 1 77 229 305 8.40e-48 157
MsG0480023149.01.T01 AT5G03240 97.436 78 2 0 1 78 1 78 1.31e-47 156
MsG0480023149.01.T01 AT5G03240 97.436 78 2 0 1 78 77 154 1.31e-47 156
MsG0480023149.01.T01 AT5G03240 97.436 78 2 0 1 78 153 230 1.31e-47 156
MsG0480023149.01.T01 AT5G20620 98.701 77 1 0 1 77 229 305 8.40e-48 157
MsG0480023149.01.T01 AT5G20620 97.436 78 2 0 1 78 1 78 1.31e-47 156
MsG0480023149.01.T01 AT5G20620 97.436 78 2 0 1 78 77 154 1.31e-47 156
MsG0480023149.01.T01 AT5G20620 97.436 78 2 0 1 78 153 230 1.31e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 1.50e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 1.50e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 1.50e-47 156
MsG0480023149.01.T01 AT4G05320 100.000 76 0 0 1 76 229 304 1.76e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 1.50e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 1.50e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 1.50e-47 156
MsG0480023149.01.T01 AT4G05320 100.000 76 0 0 1 76 229 304 1.76e-47 156
MsG0480023149.01.T01 AT4G02890 97.436 78 2 0 1 78 1 78 1.50e-47 156
MsG0480023149.01.T01 AT4G02890 97.436 78 2 0 1 78 77 154 1.50e-47 156
MsG0480023149.01.T01 AT4G02890 97.436 78 2 0 1 78 153 230 1.50e-47 156
MsG0480023149.01.T01 AT4G02890 100.000 76 0 0 1 76 229 304 1.76e-47 156
MsG0480023149.01.T01 AT4G02890 97.436 78 2 0 1 78 1 78 1.50e-47 156
MsG0480023149.01.T01 AT4G02890 97.436 78 2 0 1 78 77 154 1.50e-47 156
MsG0480023149.01.T01 AT4G02890 97.436 78 2 0 1 78 153 230 1.50e-47 156
MsG0480023149.01.T01 AT4G02890 100.000 76 0 0 1 76 229 304 1.76e-47 156
MsG0480023149.01.T01 AT1G65350 97.436 78 2 0 1 78 1 78 2.41e-47 156
MsG0480023149.01.T01 AT1G65350 96.154 78 3 0 1 78 152 229 3.37e-46 153
MsG0480023149.01.T01 AT1G65350 96.154 78 2 1 1 78 77 153 2.18e-44 148
MsG0480023149.01.T01 AT1G65350 79.121 91 5 1 1 77 228 318 1.09e-38 134
MsG0480023149.01.T01 AT5G20620 98.701 77 1 0 1 77 305 381 4.79e-47 157
MsG0480023149.01.T01 AT5G20620 97.436 78 2 0 1 78 1 78 7.42e-47 156
MsG0480023149.01.T01 AT5G20620 97.436 78 2 0 1 78 77 154 7.42e-47 156
MsG0480023149.01.T01 AT5G20620 97.436 78 2 0 1 78 153 230 7.42e-47 156
MsG0480023149.01.T01 AT5G20620 97.436 78 2 0 1 78 229 306 7.42e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 8.00e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 8.00e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 8.00e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 229 306 8.00e-47 156
MsG0480023149.01.T01 AT4G05320 100.000 76 0 0 1 76 305 380 9.29e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 8.00e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 8.00e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 8.00e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 229 306 8.00e-47 156
MsG0480023149.01.T01 AT4G05320 100.000 76 0 0 1 76 305 380 9.29e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 8.00e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 8.00e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 8.00e-47 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 229 306 8.00e-47 156
MsG0480023149.01.T01 AT4G05320 100.000 76 0 0 1 76 305 380 9.29e-47 156
MsG0480023149.01.T01 AT5G37640 94.872 78 4 0 1 78 79 156 2.19e-46 154
MsG0480023149.01.T01 AT5G37640 91.026 78 7 0 1 78 155 232 2.28e-42 143
MsG0480023149.01.T01 AT5G37640 92.208 77 5 1 1 76 231 307 3.53e-40 137
MsG0480023149.01.T01 AT5G37640 76.923 78 18 0 1 78 3 80 1.20e-33 120
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 3.30e-46 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 3.30e-46 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 3.30e-46 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 229 306 3.30e-46 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 305 382 3.30e-46 156
MsG0480023149.01.T01 AT4G05320 100.000 76 0 0 1 76 381 456 3.83e-46 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 1 78 3.30e-46 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 77 154 3.30e-46 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 153 230 3.30e-46 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 229 306 3.30e-46 156
MsG0480023149.01.T01 AT4G05320 97.436 78 2 0 1 78 305 382 3.30e-46 156
MsG0480023149.01.T01 AT4G05320 100.000 76 0 0 1 76 381 456 3.83e-46 156
MsG0480023149.01.T01 AT3G09790 91.026 78 7 0 1 78 79 156 1.54e-39 140
MsG0480023149.01.T01 AT3G09790 83.333 78 13 0 1 78 3 80 4.79e-36 131
MsG0480023149.01.T01 AT3G09790 79.730 74 15 0 1 74 552 625 1.33e-30 116
MsG0480023149.01.T01 AT3G09790 69.231 78 24 0 1 78 393 470 9.96e-28 108
MsG0480023149.01.T01 AT3G09790 73.684 76 18 1 1 74 319 394 9.82e-27 105
MsG0480023149.01.T01 AT3G09790 68.675 83 21 1 1 78 238 320 4.61e-26 103
MsG0480023149.01.T01 AT3G09790 67.073 82 20 2 1 75 155 236 1.24e-25 102
MsG0480023149.01.T01 AT3G09790 64.706 85 23 1 1 78 469 553 1.24e-24 99.4
MsG0480023149.01.T01 AT3G09790 91.026 78 7 0 1 78 79 156 1.54e-39 140
MsG0480023149.01.T01 AT3G09790 83.333 78 13 0 1 78 3 80 4.79e-36 131
MsG0480023149.01.T01 AT3G09790 79.730 74 15 0 1 74 552 625 1.33e-30 116
MsG0480023149.01.T01 AT3G09790 69.231 78 24 0 1 78 393 470 9.96e-28 108
MsG0480023149.01.T01 AT3G09790 73.684 76 18 1 1 74 319 394 9.82e-27 105
MsG0480023149.01.T01 AT3G09790 68.675 83 21 1 1 78 238 320 4.61e-26 103
MsG0480023149.01.T01 AT3G09790 67.073 82 20 2 1 75 155 236 1.24e-25 102
MsG0480023149.01.T01 AT3G09790 64.706 85 23 1 1 78 469 553 1.24e-24 99.4
MsG0480023149.01.T01 AT1G53930 75.342 73 18 0 1 73 86 158 1.27e-32 114
MsG0480023149.01.T01 AT1G53950 61.972 71 27 0 1 71 69 139 1.28e-24 92.8
MsG0480023149.01.T01 AT1G11980 55.263 76 34 0 1 76 1 76 7.22e-24 89.0
MsG0480023149.01.T01 AT1G53945 44.286 70 39 0 1 70 46 115 2.23e-12 60.8
MsG0480023149.01.T01 AT5G42220 38.889 72 44 0 1 72 24 95 3.96e-12 63.5
MsG0480023149.01.T01 AT5G42220 38.889 72 44 0 1 72 24 95 3.96e-12 63.5
MsG0480023149.01.T01 AT4G12570 38.667 75 45 1 1 74 95 169 7.32e-12 62.8

Find 44 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTTATCGTCTTCCCTGTT+AGG 0.275426 4:-81457527 None:intergenic
TCCTTCCTTATCCTGGATCT+TGG 0.283815 4:-81457589 None:intergenic
TGCTTGTGCTTGATCTTCTT+AGG 0.315697 4:-81457768 None:intergenic
ATCTTCGTGAAAACCCTAAC+AGG 0.342406 4:+81457513 MsG0480023149.01.T01:CDS
GAATCTAAGCTTCAGCCTTC+TGG 0.355525 4:-81457956 None:intergenic
GGTGAAGAGTGGATTCCTTC+TGG 0.367185 4:-81457689 None:intergenic
TTCCTTCTGGATGTTGTAAT+CGG 0.389946 4:-81457676 None:intergenic
GTGCTTGATCTTCTTAGGCT+TGG 0.399157 4:-81457763 None:intergenic
CCAGCACCACACTCAGCATT+AGG 0.399166 4:-81457870 None:intergenic
AAGATGAGACGTTGCTGGTC+AGG 0.401920 4:-81457618 None:intergenic
GCCGTCTTCCAACTGCTTAC+CGG 0.409303 4:-81457643 None:intergenic
GTGGAATTCCTTCCTTATCC+TGG 0.410864 4:-81457596 None:intergenic
CACCTTGTTCTCCGTCTTCG+TGG 0.413158 4:+81457708 MsG0480023149.01.T01:CDS
CCTAATGCTGAGTGTGGTGC+TGG 0.421706 4:+81457870 MsG0480023149.01.T01:CDS
GGTTATCGTCTTCCCTGTTA+GGG 0.439791 4:-81457526 None:intergenic
CGGCGAAGATGAGACGTTGC+TGG 0.481917 4:-81457623 None:intergenic
GATCTTCTTAGGCTTGGTGT+AGG 0.499446 4:-81457757 None:intergenic
CAAAGCCAAGATCCAGGATA+AGG 0.503228 4:+81457584 MsG0480023149.01.T01:CDS
TAAGGTTGATGATTCTGGTA+AGG 0.507107 4:+81457824 MsG0480023149.01.T01:CDS
CTGGTAAGGTGCAGAGGTTG+AGG 0.530489 4:+81457838 MsG0480023149.01.T01:CDS
CAACGTCAAAGCCAAGATCC+AGG 0.536628 4:+81457578 MsG0480023149.01.T01:CDS
CACCACGAAGACGGAGAACA+AGG 0.547100 4:-81457710 None:intergenic
AGAAGATCAAGCACAAGCAT+AGG 0.547871 4:+81457772 MsG0480023149.01.T01:CDS
CATCTTCGCCGGTAAGCAGT+TGG 0.562227 4:+81457635 MsG0480023149.01.T01:CDS
GCCGGTAAGCAGTTGGAAGA+CGG 0.576011 4:+81457642 MsG0480023149.01.T01:CDS
ATGAGACGTTGCTGGTCAGG+TGG 0.590188 4:-81457615 None:intergenic
ACGGAGAACAAGGTGAAGAG+TGG 0.590212 4:-81457700 None:intergenic
TCTTAGCGCCACCACGAAGA+CGG 0.590816 4:-81457719 None:intergenic
CAGCAACGTCTCATCTTCGC+CGG 0.594080 4:+81457624 MsG0480023149.01.T01:CDS
TGTTGTAATCGGCGAGAGTG+CGG 0.600891 4:-81457665 None:intergenic
TGTCAGAAGACTCAACCTCA+AGG 0.602618 4:-81457548 None:intergenic
TTCAGCCTTCTGGTAAACAT+AGG 0.603941 4:-81457946 None:intergenic
GCCAAGATCCAGGATAAGGA+AGG 0.608413 4:+81457588 MsG0480023149.01.T01:CDS
CTTGTTCTCCGTCTTCGTGG+TGG 0.619238 4:+81457711 MsG0480023149.01.T01:CDS
GATCAAGCACAAGCATAGGA+AGG 0.622172 4:+81457776 MsG0480023149.01.T01:CDS
ATGATTCTGGTAAGGTGCAG+AGG 0.622645 4:+81457832 MsG0480023149.01.T01:CDS
GTCAGAAGACTCAACCTCAA+GGG 0.624869 4:-81457547 None:intergenic
TAAGGTGCAGAGGTTGAGGA+AGG 0.629109 4:+81457842 MsG0480023149.01.T01:CDS
CGTCATTATTGTGGTAAGTG+TGG 0.634236 4:+81457918 MsG0480023149.01.T01:CDS
CGCCGATTACAACATCCAGA+AGG 0.636889 4:+81457674 MsG0480023149.01.T01:CDS
TCTTACCTATGTTTACCAGA+AGG 0.642596 4:+81457941 MsG0480023149.01.T01:CDS
GAGTGTCCTAATGCTGAGTG+TGG 0.690300 4:+81457864 MsG0480023149.01.T01:CDS
TCTTCGTGAAAACCCTAACA+GGG 0.705571 4:+81457514 MsG0480023149.01.T01:CDS
AGGGAAGACGATAACCCTTG+AGG 0.708675 4:+81457533 MsG0480023149.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATAAGGTTGATGATTC+TGG + Chr4:81457819-81457838 MsG0480023149.01.T01:CDS 25.0%
!! CATTTTGATCGTCATTATTG+TGG + Chr4:81457909-81457928 MsG0480023149.01.T01:CDS 30.0%
!! TGCTGTTCTTCAGTTTTATA+AGG + Chr4:81457806-81457825 MsG0480023149.01.T01:CDS 30.0%
TCTTACCTATGTTTACCAGA+AGG + Chr4:81457941-81457960 MsG0480023149.01.T01:CDS 35.0%
TTCCTTCTGGATGTTGTAAT+CGG - Chr4:81457679-81457698 None:intergenic 35.0%
!! TAAGGTTGATGATTCTGGTA+AGG + Chr4:81457824-81457843 MsG0480023149.01.T01:CDS 35.0%
AGAAGATCAAGCACAAGCAT+AGG + Chr4:81457772-81457791 MsG0480023149.01.T01:CDS 40.0%
ATCTTCGTGAAAACCCTAAC+AGG + Chr4:81457513-81457532 MsG0480023149.01.T01:CDS 40.0%
CGTCATTATTGTGGTAAGTG+TGG + Chr4:81457918-81457937 MsG0480023149.01.T01:CDS 40.0%
TCTTCGTGAAAACCCTAACA+GGG + Chr4:81457514-81457533 MsG0480023149.01.T01:CDS 40.0%
TGCTTGTGCTTGATCTTCTT+AGG - Chr4:81457771-81457790 None:intergenic 40.0%
TTCAGCCTTCTGGTAAACAT+AGG - Chr4:81457949-81457968 None:intergenic 40.0%
ATGATTCTGGTAAGGTGCAG+AGG + Chr4:81457832-81457851 MsG0480023149.01.T01:CDS 45.0%
CAAAGCCAAGATCCAGGATA+AGG + Chr4:81457584-81457603 MsG0480023149.01.T01:CDS 45.0%
GATCAAGCACAAGCATAGGA+AGG + Chr4:81457776-81457795 MsG0480023149.01.T01:CDS 45.0%
GGTTATCGTCTTCCCTGTTA+GGG - Chr4:81457529-81457548 None:intergenic 45.0%
GTCAGAAGACTCAACCTCAA+GGG - Chr4:81457550-81457569 None:intergenic 45.0%
GTGCTTGATCTTCTTAGGCT+TGG - Chr4:81457766-81457785 None:intergenic 45.0%
GTGGAATTCCTTCCTTATCC+TGG - Chr4:81457599-81457618 None:intergenic 45.0%
TCCTTCCTTATCCTGGATCT+TGG - Chr4:81457592-81457611 None:intergenic 45.0%
TGTCAGAAGACTCAACCTCA+AGG - Chr4:81457551-81457570 None:intergenic 45.0%
!! GATCTTCTTAGGCTTGGTGT+AGG - Chr4:81457760-81457779 None:intergenic 45.0%
!! GTGTGGTGCTGGAACTTTTA+TGG + Chr4:81457881-81457900 MsG0480023149.01.T01:CDS 45.0%
AAGATGAGACGTTGCTGGTC+AGG - Chr4:81457621-81457640 None:intergenic 50.0%
ACGGAGAACAAGGTGAAGAG+TGG - Chr4:81457703-81457722 None:intergenic 50.0%
AGGGAAGACGATAACCCTTG+AGG + Chr4:81457533-81457552 MsG0480023149.01.T01:CDS 50.0%
CAACGTCAAAGCCAAGATCC+AGG + Chr4:81457578-81457597 MsG0480023149.01.T01:CDS 50.0%
GAGTGTCCTAATGCTGAGTG+TGG + Chr4:81457864-81457883 MsG0480023149.01.T01:CDS 50.0%
GCCAAGATCCAGGATAAGGA+AGG + Chr4:81457588-81457607 MsG0480023149.01.T01:CDS 50.0%
GGGTTATCGTCTTCCCTGTT+AGG - Chr4:81457530-81457549 None:intergenic 50.0%
TAAGGTGCAGAGGTTGAGGA+AGG + Chr4:81457842-81457861 MsG0480023149.01.T01:CDS 50.0%
TGTTGTAATCGGCGAGAGTG+CGG - Chr4:81457668-81457687 None:intergenic 50.0%
! CGCCGATTACAACATCCAGA+AGG + Chr4:81457674-81457693 MsG0480023149.01.T01:CDS 50.0%
! GGTGAAGAGTGGATTCCTTC+TGG - Chr4:81457692-81457711 None:intergenic 50.0%
ATGAGACGTTGCTGGTCAGG+TGG - Chr4:81457618-81457637 None:intergenic 55.0%
CACCACGAAGACGGAGAACA+AGG - Chr4:81457713-81457732 None:intergenic 55.0%
CACCTTGTTCTCCGTCTTCG+TGG + Chr4:81457708-81457727 MsG0480023149.01.T01:CDS 55.0%
CAGCAACGTCTCATCTTCGC+CGG + Chr4:81457624-81457643 MsG0480023149.01.T01:CDS 55.0%
CATCTTCGCCGGTAAGCAGT+TGG + Chr4:81457635-81457654 MsG0480023149.01.T01:CDS 55.0%
CCAGCACCACACTCAGCATT+AGG - Chr4:81457873-81457892 None:intergenic 55.0%
CCTAATGCTGAGTGTGGTGC+TGG + Chr4:81457870-81457889 MsG0480023149.01.T01:CDS 55.0%
CTGGTAAGGTGCAGAGGTTG+AGG + Chr4:81457838-81457857 MsG0480023149.01.T01:CDS 55.0%
CTTGTTCTCCGTCTTCGTGG+TGG + Chr4:81457711-81457730 MsG0480023149.01.T01:CDS 55.0%
GCCGGTAAGCAGTTGGAAGA+CGG + Chr4:81457642-81457661 MsG0480023149.01.T01:CDS 55.0%
GCCGTCTTCCAACTGCTTAC+CGG - Chr4:81457646-81457665 None:intergenic 55.0%
TCTTAGCGCCACCACGAAGA+CGG - Chr4:81457722-81457741 None:intergenic 55.0%
CGGCGAAGATGAGACGTTGC+TGG - Chr4:81457626-81457645 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 81457507 81457974 81457507 ID=MsG0480023149.01;Name=MsG0480023149.01
Chr4 mRNA 81457507 81457974 81457507 ID=MsG0480023149.01.T01;Parent=MsG0480023149.01;Name=MsG0480023149.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|155
Chr4 exon 81457507 81457974 81457507 ID=MsG0480023149.01.T01:exon:5520;Parent=MsG0480023149.01.T01
Chr4 CDS 81457507 81457974 81457507 ID=MsG0480023149.01.T01:cds;Parent=MsG0480023149.01.T01
Gene Sequence

>MsG0480023149.01.T01

ATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTTGAGGTTGAGTCTTCTGACACAATCGACAACGTCAAAGCCAAGATCCAGGATAAGGAAGGAATTCCACCTGACCAGCAACGTCTCATCTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACTCTCGCCGATTACAACATCCAGAAGGAATCCACTCTTCACCTTGTTCTCCGTCTTCGTGGTGGCGCTAAGAAGCGTAAGAAGAAGACCTACACCAAGCCTAAGAAGATCAAGCACAAGCATAGGAAGGTGAAGCTTGCTGTTCTTCAGTTTTATAAGGTTGATGATTCTGGTAAGGTGCAGAGGTTGAGGAAGGAGTGTCCTAATGCTGAGTGTGGTGCTGGAACTTTTATGGCGAATCATTTTGATCGTCATTATTGTGGTAAGTGTGGTCTTACCTATGTTTACCAGAAGGCTGAAGCTTAG

Protein sequence

>MsG0480023149.01.T01

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHRKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAEA*