AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001234.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001234.01.T01 MTR_1g033420 97.428 311 8 0 1 311 18 328 0.0 639
MsG0180001234.01.T01 MTR_5g029100 57.292 288 118 2 10 292 36 323 2.08e-121 352
MsG0180001234.01.T01 MTR_5g029100 56.089 271 102 3 21 286 28 286 1.97e-107 315
MsG0180001234.01.T01 MTR_8g090100 49.655 290 134 5 4 286 9 293 2.10e-98 293
MsG0180001234.01.T01 MTR_8g064180 46.125 271 140 1 10 274 40 310 9.12e-84 255
MsG0180001234.01.T01 MTR_4g057450 43.116 276 142 5 2 274 41 304 1.71e-72 226
MsG0180001234.01.T01 MTR_2g095800 41.948 267 144 5 12 274 50 309 5.04e-67 212
MsG0180001234.01.T01 MTR_1g063020 41.509 265 143 5 14 274 38 294 8.50e-66 209
MsG0180001234.01.T01 MTR_7g102260 41.791 268 144 5 11 274 32 291 9.52e-65 206
MsG0180001234.01.T01 MTR_8g013055 40.530 264 149 4 14 275 29 286 1.75e-63 202
MsG0180001234.01.T01 MTR_7g084750 37.770 278 160 6 5 277 21 290 2.19e-59 192
MsG0180001234.01.T01 MTR_6g033085 38.434 281 156 8 4 277 20 290 3.88e-59 191
MsG0180001234.01.T01 MTR_4g097700 39.777 269 153 7 11 275 62 325 1.01e-57 189
MsG0180001234.01.T01 MTR_4g097640 42.562 242 132 6 36 275 52 288 2.03e-57 187
MsG0180001234.01.T01 MTR_4g097670 42.562 242 132 6 36 275 52 288 2.03e-57 187
MsG0180001234.01.T01 MTR_7g084770 37.956 274 159 5 8 277 24 290 5.41e-57 186
MsG0180001234.01.T01 MTR_7g084760 37.818 275 160 5 8 278 24 291 7.40e-57 186
MsG0180001234.01.T01 MTR_6g033055 36.786 280 162 6 4 277 20 290 8.69e-57 185
MsG0180001234.01.T01 MTR_2g089140 38.148 270 150 7 16 275 25 287 1.17e-55 182
MsG0180001234.01.T01 MTR_5g091730 38.550 262 147 6 16 274 28 278 4.90e-55 181
MsG0180001234.01.T01 MTR_4g045853 38.007 271 149 7 16 275 27 289 1.29e-54 180
MsG0180001234.01.T01 MTR_1g105900 36.842 266 157 7 16 276 34 293 3.22e-54 179
MsG0180001234.01.T01 MTR_4g126920 37.358 265 156 6 16 276 25 283 4.44e-54 178
MsG0180001234.01.T01 MTR_4g128410 39.474 266 144 8 16 274 25 280 6.50e-54 177
MsG0180001234.01.T01 MTR_1g105495 35.227 264 166 4 16 276 35 296 1.62e-53 177
MsG0180001234.01.T01 MTR_7g093530 37.500 256 151 5 24 276 32 281 5.98e-52 172
MsG0180001234.01.T01 MTR_7g056090 35.985 264 158 6 14 276 30 283 6.12e-52 172
MsG0180001234.01.T01 MTR_4g128400 37.500 256 151 5 24 276 36 285 1.64e-51 172
MsG0180001234.01.T01 MTR_4g128570 35.581 267 151 5 11 275 26 273 5.56e-51 170
MsG0180001234.01.T01 MTR_2g049130 34.661 251 152 7 14 261 27 268 2.70e-50 168
MsG0180001234.01.T01 MTR_4g128580 37.828 267 153 7 16 275 26 286 2.78e-50 168
MsG0180001234.01.T01 MTR_3g089540 36.842 266 158 6 16 279 30 287 3.18e-50 168
MsG0180001234.01.T01 MTR_2g089140 39.301 229 124 6 57 275 1 224 6.71e-50 166
MsG0180001234.01.T01 MTR_3g084630 37.165 261 151 6 16 274 28 277 2.19e-49 166
MsG0180001234.01.T01 MTR_3g084620 37.165 261 151 6 16 274 28 277 2.24e-49 166
MsG0180001234.01.T01 MTR_2g049030 34.444 270 155 9 10 274 24 276 1.08e-48 164
MsG0180001234.01.T01 MTR_6g088320 34.749 259 152 8 24 274 34 283 1.80e-48 164
MsG0180001234.01.T01 MTR_2g038860 35.688 269 157 6 16 275 26 287 3.57e-48 163
MsG0180001234.01.T01 MTR_2g038705 35.688 269 157 6 16 275 26 287 3.57e-48 163
MsG0180001234.01.T01 MTR_8g081040 35.632 261 156 5 16 274 31 281 2.19e-46 158
MsG0180001234.01.T01 MTR_8g102220 35.632 261 143 7 16 274 29 266 8.47e-46 156
MsG0180001234.01.T01 MTR_8g102910 35.249 261 155 7 20 274 27 279 8.72e-46 157
MsG0180001234.01.T01 MTR_4g128590 36.239 218 125 6 65 274 64 275 1.72e-40 142
MsG0180001234.01.T01 MTR_8g032640 36.788 193 108 6 20 211 19 198 1.71e-21 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001234.01.T01 AT1G14720 68.121 298 93 2 9 304 24 321 6.16e-157 442
MsG0180001234.01.T01 AT2G01850 66.445 301 99 2 9 307 24 324 1.26e-152 431
MsG0180001234.01.T01 AT1G32170 58.885 287 115 3 10 293 26 312 1.29e-121 353
MsG0180001234.01.T01 AT4G18990 53.289 304 127 3 10 299 34 336 4.19e-111 326
MsG0180001234.01.T01 AT4G18990 52.155 232 96 3 82 299 32 262 8.43e-82 249
MsG0180001234.01.T01 AT1G10550 44.891 274 139 2 11 274 38 309 4.41e-81 248
MsG0180001234.01.T01 AT4G13090 44.815 270 139 5 9 274 25 288 2.84e-71 223
MsG0180001234.01.T01 AT4G13080 41.544 272 153 3 3 274 26 291 9.64e-69 216
MsG0180001234.01.T01 AT3G25050 40.377 265 148 5 13 274 32 289 4.02e-65 207
MsG0180001234.01.T01 AT5G13870 38.710 279 160 5 3 277 19 290 7.27e-64 204
MsG0180001234.01.T01 AT5G13870 38.710 279 160 5 3 277 19 290 7.27e-64 204
MsG0180001234.01.T01 AT5G13870 38.710 279 160 5 3 277 19 290 7.27e-64 204
MsG0180001234.01.T01 AT3G44990 40.304 263 147 4 15 274 38 293 1.58e-63 202
MsG0180001234.01.T01 AT2G36870 40.840 262 145 4 16 274 43 297 3.00e-63 202
MsG0180001234.01.T01 AT5G65730 41.445 263 143 6 16 274 35 290 2.07e-62 200
MsG0180001234.01.T01 AT2G06850 40.647 278 152 7 5 277 24 293 4.11e-62 199
MsG0180001234.01.T01 AT4G37800 40.304 263 146 6 16 274 34 289 1.14e-61 198
MsG0180001234.01.T01 AT4G03210 40.152 264 145 6 16 274 29 284 5.92e-59 191
MsG0180001234.01.T01 AT4G03210 41.126 231 127 4 48 274 31 256 6.40e-56 182
MsG0180001234.01.T01 AT2G06850 42.797 236 124 5 46 277 5 233 8.90e-56 181
MsG0180001234.01.T01 AT1G11545 36.131 274 152 6 16 276 38 301 6.78e-54 178
MsG0180001234.01.T01 AT4G25810 39.382 259 142 8 24 275 34 284 1.49e-53 177
MsG0180001234.01.T01 AT5G57560 37.984 258 148 6 24 275 31 282 4.65e-52 173
MsG0180001234.01.T01 AT5G57550 37.786 262 151 7 16 274 30 282 3.84e-51 171
MsG0180001234.01.T01 AT3G23730 36.981 265 156 5 16 274 27 286 5.29e-51 170
MsG0180001234.01.T01 AT4G14130 37.405 262 155 6 16 274 29 284 1.47e-49 167
MsG0180001234.01.T01 AT4G30270 37.209 258 139 6 24 278 32 269 4.44e-49 165
MsG0180001234.01.T01 AT2G18800 34.965 286 158 6 16 282 28 304 4.66e-49 166
MsG0180001234.01.T01 AT5G48070 37.500 248 142 7 30 274 44 281 6.76e-49 165
MsG0180001234.01.T01 AT4G28850 34.799 273 164 8 9 274 22 287 1.77e-48 164
MsG0180001234.01.T01 AT2G14620 36.255 251 145 8 33 276 54 296 1.91e-48 164
MsG0180001234.01.T01 AT5G57530 37.450 251 146 7 31 277 42 285 4.51e-48 162
MsG0180001234.01.T01 AT4G30290 39.655 232 125 7 47 274 56 276 1.59e-47 161
MsG0180001234.01.T01 AT4G30280 38.528 231 129 6 47 274 61 281 1.98e-47 161
MsG0180001234.01.T01 AT5G57540 35.338 266 161 7 16 277 26 284 2.73e-47 160
MsG0180001234.01.T01 AT1G65310 38.281 256 144 7 24 275 37 282 2.71e-46 158
MsG0180001234.01.T01 AT1G65310 38.281 256 144 7 24 275 59 304 4.85e-46 158
MsG0180001234.01.T01 AT2G14620 36.287 237 136 8 47 276 18 246 2.51e-45 154
MsG0180001234.01.T01 AT2G14620 36.404 228 130 8 56 276 16 235 1.94e-43 149
MsG0180001234.01.T01 AT4G25820 34.091 264 165 5 16 276 30 287 3.01e-42 147
MsG0180001234.01.T01 AT3G48580 32.453 265 156 11 12 274 30 273 4.22e-36 131
MsG0180001234.01.T01 AT2G36870 45.652 138 70 2 16 150 43 178 6.87e-33 120
MsG0180001234.01.T01 AT3G48580 33.333 231 132 10 46 274 4 214 6.17e-32 119
MsG0180001234.01.T01 AT3G48580 29.434 265 144 12 12 274 30 253 6.05e-23 95.9

Find 84 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTCAAACAAATGTTTA+TGG 0.147337 1:+17933121 MsG0180001234.01.T01:CDS
AGATCAAATATTTGTATTAA+AGG 0.173962 1:-17935042 None:intergenic
GAGAAGAAAGATATGGTTTA+TGG 0.194534 1:+17933167 MsG0180001234.01.T01:CDS
CACCATCTCTTTAGGTTATT+AGG 0.195008 1:+17934917 MsG0180001234.01.T01:three_prime_UTR
TTCATCAGTATAGTATTCTT+TGG 0.249093 1:+17933209 MsG0180001234.01.T01:CDS
TCTCATGATCTTTACCTTCA+TGG 0.260057 1:+17932207 MsG0180001234.01.T01:CDS
TAATAATCATATAACTATTA+TGG 0.268777 1:-17934859 None:intergenic
GAATCAAAATGGAGAACTTT+AGG 0.272268 1:+17934451 MsG0180001234.01.T01:CDS
ACAAGTTGAAAGAATCAAAA+TGG 0.279907 1:+17934440 MsG0180001234.01.T01:CDS
TACAAAGTCATTGCCTTTGA+TGG 0.283691 1:-17934231 None:intergenic
CTCTTACTTGATGAGTCTTC+AGG 0.286306 1:+17932078 MsG0180001234.01.T01:CDS
GTATAGTTCACCATCTCTTT+AGG 0.293755 1:+17934909 MsG0180001234.01.T01:three_prime_UTR
CAAACAAATGTTTATGGAAA+TGG 0.295488 1:+17933127 MsG0180001234.01.T01:CDS
AAAACGAAGTAACTTTGTTT+TGG 0.306141 1:-17934629 None:intergenic
GGTATAATAGCAAAATTTCT+TGG 0.312439 1:-17931982 None:intergenic
ATAATCAGAAGGTAATTTAA+TGG 0.316688 1:-17932244 None:intergenic
GTTCAACAAAATCAAAATTA+TGG 0.319332 1:+17934676 MsG0180001234.01.T01:three_prime_UTR
AAGGTGCTTTGCTTTGTTTA+TGG 0.324087 1:-17931671 None:intergenic
GTCAGAGAATTCAGCAATAT+AGG 0.324857 1:-17934325 None:intergenic
AGGTGCTTTGCTTTGTTTAT+GGG 0.334332 1:-17931670 None:intergenic
CGGTAGAGGGACTTTGTATC+TGG 0.344053 1:-17934511 None:intergenic
GAAGGGTATACACCTTTGTT+TGG 0.357285 1:+17932012 MsG0180001234.01.T01:CDS
TGACTTTGTATTCTACCATA+TGG 0.360868 1:+17934244 MsG0180001234.01.T01:CDS
CCATATGGGATGCATCTACT+TGG 0.374925 1:+17934259 MsG0180001234.01.T01:CDS
AAATTTGATCCCGTTACATT+TGG 0.384702 1:+17934573 MsG0180001234.01.T01:CDS
GTCTCTTTCCACGGTGGTGC+CGG 0.385909 1:-17934602 None:intergenic
CACTTGGTCACATGCTCAAT+AGG 0.402506 1:-17934375 None:intergenic
TTCTCTGACTTTGTCCTACA+TGG 0.411675 1:+17934339 MsG0180001234.01.T01:CDS
ATTGGAAGAGAAGAAAGATA+TGG 0.430520 1:+17933160 MsG0180001234.01.T01:CDS
GAGAGAAGAGAAAGAAAAGA+AGG 0.433086 1:-17931741 None:intergenic
TTACCTTCTGATTATACTGC+TGG 0.434184 1:+17932252 MsG0180001234.01.T01:CDS
GACTTTGTATTCTACCATAT+GGG 0.438803 1:+17934245 MsG0180001234.01.T01:CDS
TCAGAGAATTCAGCAATATA+GGG 0.440728 1:-17934324 None:intergenic
GATCCCGTTACATTTGGTAA+TGG 0.449715 1:+17934579 MsG0180001234.01.T01:CDS
TTTATTCTGCAGTTGTCAAA+TGG 0.450372 1:+17933028 MsG0180001234.01.T01:intron
CAGAATGAATGATCAAGTTA+TGG 0.454056 1:-17932038 None:intergenic
ATATGATTATTAATTAATGC+TGG 0.455084 1:+17934870 MsG0180001234.01.T01:three_prime_UTR
GGTGTATACCCTTCATCAAA+AGG 0.456262 1:-17932003 None:intergenic
TAGCTTACATATGACACAAA+GGG 0.472745 1:-17934999 None:intergenic
GGAACATAAGAGGCAAAGAT+TGG 0.477793 1:+17933098 MsG0180001234.01.T01:CDS
CCAAGTAGATGCATCCCATA+TGG 0.478573 1:-17934259 None:intergenic
AAGTAAGAGATGAACAGCTT+TGG 0.482296 1:-17932064 None:intergenic
TCGATCACACACTCCGGTAG+AGG 0.485145 1:-17934525 None:intergenic
GAGAAGAAGAATATAACAAG+AGG 0.485626 1:-17931719 None:intergenic
TTTGGTGTATAGAGATAAGA+GGG 0.489836 1:+17934820 MsG0180001234.01.T01:three_prime_UTR
ATTCAAAGTCTATTTCATCA+TGG 0.490439 1:-17933069 None:intergenic
CCGTTACATTTGGTAATGGC+CGG 0.501258 1:+17934583 MsG0180001234.01.T01:CDS
TGATTATTAATTAATGCTGG+TGG 0.502207 1:+17934873 MsG0180001234.01.T01:three_prime_UTR
CGGCCATTACCAAATGTAAC+GGG 0.507577 1:-17934582 None:intergenic
AGAAGAAGAATATAACAAGA+GGG 0.513988 1:-17931718 None:intergenic
TGATTATACTGCTGGAGTTG+TGG 0.518642 1:+17932260 MsG0180001234.01.T01:CDS
TTTGGCGGTGTCTCTTTCCA+CGG 0.520645 1:-17934611 None:intergenic
GTTCTCTTTACTTCTCTGAC+AGG 0.527307 1:-17934186 None:intergenic
ACTTTGAGCACTGTCACACT+TGG 0.532982 1:-17934391 None:intergenic
GATTATTAATTAATGCTGGT+GGG 0.534378 1:+17934874 MsG0180001234.01.T01:three_prime_UTR
AGAGAGTGACGAGTGAATGA+AGG 0.549135 1:-17931690 None:intergenic
GGAAATGGAAGTACAAACAT+TGG 0.549278 1:+17933142 MsG0180001234.01.T01:CDS
AAGCACTAAAATAGCCATGA+AGG 0.555543 1:-17932221 None:intergenic
GCATCTACTTGGGCTACCAA+TGG 0.559060 1:+17934270 MsG0180001234.01.T01:CDS
TCTCTATACACCAAAATGAA+AGG 0.561408 1:-17934812 None:intergenic
TCGATTCGCGACAAGCTGAA+AGG 0.568686 1:+17934544 MsG0180001234.01.T01:CDS
GAAGAAGAATATAACAAGAG+GGG 0.575879 1:-17931717 None:intergenic
TACTGATGAAATTCCTCAGA+AGG 0.576854 1:-17933196 None:intergenic
CCGGCCATTACCAAATGTAA+CGG 0.580145 1:-17934583 None:intergenic
CGATCACACACTCCGGTAGA+GGG 0.581239 1:-17934524 None:intergenic
ACATAAGAGGCAAAGATTGG+AGG 0.581414 1:+17933101 MsG0180001234.01.T01:CDS
TACCTAATAACCTAAAGAGA+TGG 0.581873 1:-17934919 None:intergenic
CAACAAAATCAAAATTATGG+TGG 0.583041 1:+17934679 MsG0180001234.01.T01:three_prime_UTR
CAGATACAAAGTCCCTCTAC+CGG 0.595007 1:+17934512 MsG0180001234.01.T01:CDS
CTTGGTGAAACAGAGTAACA+AGG 0.597670 1:-17931964 None:intergenic
TCAACTTGTGAAACATCAGA+AGG 0.600465 1:-17934426 None:intergenic
TCTACTTGGGCTACCAATGG+AGG 0.600953 1:+17934273 MsG0180001234.01.T01:CDS
TTTATGGTTTGATCCTTCTG+AGG 0.601961 1:+17933183 MsG0180001234.01.T01:CDS
CATATGGGATGCATCTACTT+GGG 0.612597 1:+17934260 MsG0180001234.01.T01:CDS
GATCAACTGCACAACCATGT+AGG 0.614567 1:-17934353 None:intergenic
AAGAGAACTGAGTCAATGAG+AGG 0.626190 1:+17934201 MsG0180001234.01.T01:CDS
ACTCCAGCAGTATAATCAGA+AGG 0.629305 1:-17932255 None:intergenic
ATAGCTTACATATGACACAA+AGG 0.639475 1:-17935000 None:intergenic
GGCGGTGTCTCTTTCCACGG+TGG 0.643693 1:-17934608 None:intergenic
AAGTTATGGTCTCCAAACAA+AGG 0.651449 1:-17932024 None:intergenic
CGCGAATCGATCACACACTC+CGG 0.652371 1:-17934531 None:intergenic
AGCTTACATATGACACAAAG+GGG 0.667046 1:-17934998 None:intergenic
TTGGTGTATAGAGATAAGAG+GGG 0.681522 1:+17934821 MsG0180001234.01.T01:three_prime_UTR
GGTAATGGCCGGCACCACCG+TGG 0.687743 1:+17934594 MsG0180001234.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTAAATTATTAAAAA+TGG - Chr1:17932628-17932647 None:intergenic 0.0%
!! TAATAATCATATAACTATTA+TGG - Chr1:17934862-17934881 None:intergenic 10.0%
!! AACTAAATATAGCATATTAA+GGG - Chr1:17933273-17933292 None:intergenic 15.0%
!! ATATGATTATTAATTAATGC+TGG + Chr1:17934870-17934889 MsG0180001234.01.T01:three_prime_UTR 15.0%
!! TAAAATACAACTAAAAAACA+CGG - Chr1:17933892-17933911 None:intergenic 15.0%
!! TAACTAAATATAGCATATTA+AGG - Chr1:17933274-17933293 None:intergenic 15.0%
!! TATCTCTCAAATTTATATAA+AGG - Chr1:17934029-17934048 None:intergenic 15.0%
!! TATGTATATATATCCTTAAA+GGG + Chr1:17933554-17933573 MsG0180001234.01.T01:intron 15.0%
!! TTATGTATATATATCCTTAA+AGG + Chr1:17933553-17933572 MsG0180001234.01.T01:intron 15.0%
!! TTTATATAAATTTGAGAGAT+AGG + Chr1:17934028-17934047 MsG0180001234.01.T01:intron 15.0%
!!! ATTTTTTTCTTCCATTTTTT+AGG - Chr1:17932989-17933008 None:intergenic 15.0%
!! AATGTTAATAATGAGGTTTA+GGG + Chr1:17933780-17933799 MsG0180001234.01.T01:intron 20.0%
!! ACGAAACAAAAAAAAAAACA+TGG + Chr1:17931893-17931912 MsG0180001234.01.T01:five_prime_UTR 20.0%
!! ATAATCAGAAGGTAATTTAA+TGG - Chr1:17932247-17932266 None:intergenic 20.0%
!! CTTGAGAAAATAATTTGAAT+GGG + Chr1:17932520-17932539 MsG0180001234.01.T01:intron 20.0%
!! GATTTAATGATTGAAAAACA+CGG + Chr1:17933917-17933936 MsG0180001234.01.T01:intron 20.0%
!! GTTCAACAAAATCAAAATTA+TGG + Chr1:17934676-17934695 MsG0180001234.01.T01:three_prime_UTR 20.0%
!! TCTTGAGAAAATAATTTGAA+TGG + Chr1:17932519-17932538 MsG0180001234.01.T01:intron 20.0%
!!! AAATAGACTTTGAATTTTTG+GGG + Chr1:17933077-17933096 MsG0180001234.01.T01:CDS 20.0%
!!! ATGTTAATGGTTAATTTGTT+AGG - Chr1:17933812-17933831 None:intergenic 20.0%
!!! CACTAATTTTACCTAAAAAA+TGG + Chr1:17932975-17932994 MsG0180001234.01.T01:intron 20.0%
!!! GAAATAGACTTTGAATTTTT+GGG + Chr1:17933076-17933095 MsG0180001234.01.T01:CDS 20.0%
!!! GGTAATTTTATCATTTAATG+TGG + Chr1:17934938-17934957 MsG0180001234.01.T01:three_prime_UTR 20.0%
!!! GTGTTTTTCAATCATTAAAT+CGG - Chr1:17933918-17933937 None:intergenic 20.0%
!!! TGAAATAGACTTTGAATTTT+TGG + Chr1:17933075-17933094 MsG0180001234.01.T01:CDS 20.0%
!!! TTTAGTCTTTATGATGATAA+AGG + Chr1:17932689-17932708 MsG0180001234.01.T01:intron 20.0%
! AGAAGAAGAATATAACAAGA+GGG - Chr1:17931721-17931740 None:intergenic 25.0%
! AGGATTCAAACAAATGTTTA+TGG + Chr1:17933121-17933140 MsG0180001234.01.T01:CDS 25.0%
! ATGAACGAATGTTAATAATG+AGG + Chr1:17933773-17933792 MsG0180001234.01.T01:intron 25.0%
! ATTCAAAGTCTATTTCATCA+TGG - Chr1:17933072-17933091 None:intergenic 25.0%
! CAAACAAATGTTTATGGAAA+TGG + Chr1:17933127-17933146 MsG0180001234.01.T01:CDS 25.0%
! CAACAAAATCAAAATTATGG+TGG + Chr1:17934679-17934698 MsG0180001234.01.T01:three_prime_UTR 25.0%
! GAATGTTAATAATGAGGTTT+AGG + Chr1:17933779-17933798 MsG0180001234.01.T01:intron 25.0%
! GATTATTAATTAATGCTGGT+GGG + Chr1:17934874-17934893 MsG0180001234.01.T01:three_prime_UTR 25.0%
! GATTGCTAATTCATGAATTT+AGG - Chr1:17933684-17933703 None:intergenic 25.0%
! GGTATAATAGCAAAATTTCT+TGG - Chr1:17931985-17932004 None:intergenic 25.0%
! TAGATCATTAGTATATGATG+AGG - Chr1:17932307-17932326 None:intergenic 25.0%
! TAGTCTATAAAACACTAACA+TGG + Chr1:17932467-17932486 MsG0180001234.01.T01:intron 25.0%
! TATAAAGTTCAGATGACATA+TGG - Chr1:17933526-17933545 None:intergenic 25.0%
! TGATTATTAATTAATGCTGG+TGG + Chr1:17934873-17934892 MsG0180001234.01.T01:three_prime_UTR 25.0%
! TTAGAAATTCAACGTAATCA+TGG - Chr1:17932891-17932910 None:intergenic 25.0%
! TTATAAAGATTCCAATACCT+AGG - Chr1:17933630-17933649 None:intergenic 25.0%
! TTCATCAGTATAGTATTCTT+TGG + Chr1:17933209-17933228 MsG0180001234.01.T01:CDS 25.0%
! TTCTTATAGGCAAATGTTAA+TGG - Chr1:17933825-17933844 None:intergenic 25.0%
!! AATATCAAACAGACTTTTGA+TGG - Chr1:17932770-17932789 None:intergenic 25.0%
!! ACAAGTTGAAAGAATCAAAA+TGG + Chr1:17934440-17934459 MsG0180001234.01.T01:CDS 25.0%
!! ATGTACAATTTTTGCATTGA+TGG + Chr1:17933479-17933498 MsG0180001234.01.T01:intron 25.0%
!! CAAATTATTTTCTCAAGATG+TGG - Chr1:17932517-17932536 None:intergenic 25.0%
!! CTATTATACCTTTTGATGAA+GGG + Chr1:17931995-17932014 MsG0180001234.01.T01:CDS 25.0%
!! GTCACAGAAATTTTTCTTAA+GGG - Chr1:17931824-17931843 None:intergenic 25.0%
!! TGTCACAGAAATTTTTCTTA+AGG - Chr1:17931825-17931844 None:intergenic 25.0%
!! TTCGACTAATTTTCATCTAA+TGG - Chr1:17933869-17933888 None:intergenic 25.0%
!!! AAAACGAAGTAACTTTGTTT+TGG - Chr1:17934632-17934651 None:intergenic 25.0%
!!! TTTTGAAAGAAACTGTCATT+TGG + Chr1:17932789-17932808 MsG0180001234.01.T01:intron 25.0%
AAATTTGATCCCGTTACATT+TGG + Chr1:17934573-17934592 MsG0180001234.01.T01:CDS 30.0%
AACCCACAAGATAAAAAAGT+TGG + Chr1:17933580-17933599 MsG0180001234.01.T01:intron 30.0%
ACATAATTCGCTGTAACATT+TGG - Chr1:17932386-17932405 None:intergenic 30.0%
ATACCTAGGAATTTATCCAA+TGG - Chr1:17933616-17933635 None:intergenic 30.0%
ATAGCTTACATATGACACAA+AGG - Chr1:17935003-17935022 None:intergenic 30.0%
ATTGGAAGAGAAGAAAGATA+TGG + Chr1:17933160-17933179 MsG0180001234.01.T01:CDS 30.0%
CAGAATGAATGATCAAGTTA+TGG - Chr1:17932041-17932060 None:intergenic 30.0%
GAAGAAGAATATAACAAGAG+GGG - Chr1:17931720-17931739 None:intergenic 30.0%
GAATCAAAATGGAGAACTTT+AGG + Chr1:17934451-17934470 MsG0180001234.01.T01:CDS 30.0%
GACTTTGTATTCTACCATAT+GGG + Chr1:17934245-17934264 MsG0180001234.01.T01:CDS 30.0%
GAGAAGAAAGATATGGTTTA+TGG + Chr1:17933167-17933186 MsG0180001234.01.T01:CDS 30.0%
GAGAAGAAGAATATAACAAG+AGG - Chr1:17931722-17931741 None:intergenic 30.0%
GGTAAAATTAGTGCAATTGA+TGG - Chr1:17932968-17932987 None:intergenic 30.0%
GTATATATATCCTTAAAGGG+AGG + Chr1:17933557-17933576 MsG0180001234.01.T01:intron 30.0%
TACCTAATAACCTAAAGAGA+TGG - Chr1:17934922-17934941 None:intergenic 30.0%
TAGCTTACATATGACACAAA+GGG - Chr1:17935002-17935021 None:intergenic 30.0%
TATGAAACATAGACACTTCT+CGG + Chr1:17932332-17932351 MsG0180001234.01.T01:intron 30.0%
TCAGAGAATTCAGCAATATA+GGG - Chr1:17934327-17934346 None:intergenic 30.0%
TCTCTATACACCAAAATGAA+AGG - Chr1:17934815-17934834 None:intergenic 30.0%
TGACTTTGTATTCTACCATA+TGG + Chr1:17934244-17934263 MsG0180001234.01.T01:CDS 30.0%
TGCGGATACATATTTCTTAT+AGG - Chr1:17933838-17933857 None:intergenic 30.0%
TTGGATAAATTCCTAGGTAT+TGG + Chr1:17933616-17933635 MsG0180001234.01.T01:intron 30.0%
TTTATTCTGCAGTTGTCAAA+TGG + Chr1:17933028-17933047 MsG0180001234.01.T01:intron 30.0%
! ACAGACTTTTGATGGAAAAA+AGG - Chr1:17932762-17932781 None:intergenic 30.0%
! ATCTCTTTTGCCTTTCATTT+TGG + Chr1:17934802-17934821 MsG0180001234.01.T01:three_prime_UTR 30.0%
! CAGACTTTTGATGGAAAAAA+GGG - Chr1:17932761-17932780 None:intergenic 30.0%
! GCTATTATACCTTTTGATGA+AGG + Chr1:17931994-17932013 MsG0180001234.01.T01:CDS 30.0%
! TACTTTGTATTTTCCTCCAT+TGG - Chr1:17934289-17934308 None:intergenic 30.0%
! TGAACAAAAAGTACAAGCAA+GGG - Chr1:17933373-17933392 None:intergenic 30.0%
! TTGAACAAAAAGTACAAGCA+AGG - Chr1:17933374-17933393 None:intergenic 30.0%
! TTTGGTGTATAGAGATAAGA+GGG + Chr1:17934820-17934839 MsG0180001234.01.T01:three_prime_UTR 30.0%
!! TTGTGTTTTGTTCTGTTTTC+AGG + Chr1:17932171-17932190 MsG0180001234.01.T01:intron 30.0%
!! TTTTGGTGTATAGAGATAAG+AGG + Chr1:17934819-17934838 MsG0180001234.01.T01:three_prime_UTR 30.0%
!!! AACTGGTTTTTGCTTTTAGT+AGG + Chr1:17933447-17933466 MsG0180001234.01.T01:intron 30.0%
!!! CACCAACTTTTTTATCTTGT+GGG - Chr1:17933585-17933604 None:intergenic 30.0%
!!! TGTTTTAGTGCATGTTTGTT+TGG - Chr1:17934733-17934752 None:intergenic 30.0%
AAAGATTGACAAAATCGCGA+TGG + Chr1:17932932-17932951 MsG0180001234.01.T01:intron 35.0%
AAATCTGTGGATGTGGTAAA+TGG - Chr1:17933422-17933441 None:intergenic 35.0%
AAGCACTAAAATAGCCATGA+AGG - Chr1:17932224-17932243 None:intergenic 35.0%
AAGTAAGAGATGAACAGCTT+TGG - Chr1:17932067-17932086 None:intergenic 35.0%
AAGTTATGGTCTCCAAACAA+AGG - Chr1:17932027-17932046 None:intergenic 35.0%
ACCATTGGATGAAGATAAGA+CGG - Chr1:17933944-17933963 None:intergenic 35.0%
AGCTTACATATGACACAAAG+GGG - Chr1:17935001-17935020 None:intergenic 35.0%
ATCCACAGATTTGTGAAAAC+TGG + Chr1:17933430-17933449 MsG0180001234.01.T01:intron 35.0%
CATCTAATGGTCTAGATTTG+CGG - Chr1:17933856-17933875 None:intergenic 35.0%
CCACAAGATAAAAAAGTTGG+TGG + Chr1:17933583-17933602 MsG0180001234.01.T01:intron 35.0%
GAGAGAAGAGAAAGAAAAGA+AGG - Chr1:17931744-17931763 None:intergenic 35.0%
GCTGTTGCAAATTTAACCAT+TGG - Chr1:17933959-17933978 None:intergenic 35.0%
GTATAGTTCACCATCTCTTT+AGG + Chr1:17934909-17934928 MsG0180001234.01.T01:three_prime_UTR 35.0%
GTCAGAGAATTCAGCAATAT+AGG - Chr1:17934328-17934347 None:intergenic 35.0%
TACAAAGTCATTGCCTTTGA+TGG - Chr1:17934234-17934253 None:intergenic 35.0%
TACTGATGAAATTCCTCAGA+AGG - Chr1:17933199-17933218 None:intergenic 35.0%
TCAACTTGTGAAACATCAGA+AGG - Chr1:17934429-17934448 None:intergenic 35.0%
TCTCATGATCTTTACCTTCA+TGG + Chr1:17932207-17932226 MsG0180001234.01.T01:CDS 35.0%
TGACCATTGGATAAATTCCT+AGG + Chr1:17933610-17933629 MsG0180001234.01.T01:intron 35.0%
TTACCTTCTGATTATACTGC+TGG + Chr1:17932252-17932271 MsG0180001234.01.T01:CDS 35.0%
TTGGTGTATAGAGATAAGAG+GGG + Chr1:17934821-17934840 MsG0180001234.01.T01:three_prime_UTR 35.0%
TTGTTCCTTAGTTACCAAGT+AGG + Chr1:17933709-17933728 MsG0180001234.01.T01:intron 35.0%
TTTATGGTTTGATCCTTCTG+AGG + Chr1:17933183-17933202 MsG0180001234.01.T01:CDS 35.0%
! AAAAAGTACAAGCAAGGGAA+TGG - Chr1:17933368-17933387 None:intergenic 35.0%
! AACCAGTTTTCACAAATCTG+TGG - Chr1:17933435-17933454 None:intergenic 35.0%
! CACCATCTCTTTAGGTTATT+AGG + Chr1:17934917-17934936 MsG0180001234.01.T01:three_prime_UTR 35.0%
! GGAAATGGAAGTACAAACAT+TGG + Chr1:17933142-17933161 MsG0180001234.01.T01:CDS 35.0%
! TGAAACCTACTTGGTAACTA+AGG - Chr1:17933717-17933736 None:intergenic 35.0%
! TTTTCACAAATCTGTGGATG+TGG - Chr1:17933429-17933448 None:intergenic 35.0%
!! AAGGTGCTTTGCTTTGTTTA+TGG - Chr1:17931674-17931693 None:intergenic 35.0%
!! ACTTCGTTTTAGTGCATGTT+TGG + Chr1:17934642-17934661 MsG0180001234.01.T01:exon 35.0%
!! AGGTGCTTTGCTTTGTTTAT+GGG - Chr1:17931673-17931692 None:intergenic 35.0%
!! GAATTTTTGGGGAACATAAG+AGG + Chr1:17933088-17933107 MsG0180001234.01.T01:CDS 35.0%
!!! ACGAAGTAACTTTGTTTTGG+CGG - Chr1:17934629-17934648 None:intergenic 35.0%
!!! CCACCAACTTTTTTATCTTG+TGG - Chr1:17933586-17933605 None:intergenic 35.0%
AAGAGAACTGAGTCAATGAG+AGG + Chr1:17934201-17934220 MsG0180001234.01.T01:CDS 40.0%
ACATAAGAGGCAAAGATTGG+AGG + Chr1:17933101-17933120 MsG0180001234.01.T01:CDS 40.0%
ACATAGACACTTCTCGGATT+AGG + Chr1:17932338-17932357 MsG0180001234.01.T01:intron 40.0%
ACCGTCTTATCTTCATCCAA+TGG + Chr1:17933940-17933959 MsG0180001234.01.T01:intron 40.0%
ACTCCAGCAGTATAATCAGA+AGG - Chr1:17932258-17932277 None:intergenic 40.0%
AGAGACGTATGAAACCTACT+TGG - Chr1:17933726-17933745 None:intergenic 40.0%
CATATGGGATGCATCTACTT+GGG + Chr1:17934260-17934279 MsG0180001234.01.T01:CDS 40.0%
CTCTTACTTGATGAGTCTTC+AGG + Chr1:17932078-17932097 MsG0180001234.01.T01:CDS 40.0%
CTTGGTGAAACAGAGTAACA+AGG - Chr1:17931967-17931986 None:intergenic 40.0%
GATCCCGTTACATTTGGTAA+TGG + Chr1:17934579-17934598 MsG0180001234.01.T01:CDS 40.0%
GGAACATAAGAGGCAAAGAT+TGG + Chr1:17933098-17933117 MsG0180001234.01.T01:CDS 40.0%
GGTGTATACCCTTCATCAAA+AGG - Chr1:17932006-17932025 None:intergenic 40.0%
GTTCTCTTTACTTCTCTGAC+AGG - Chr1:17934189-17934208 None:intergenic 40.0%
TGATTATACTGCTGGAGTTG+TGG + Chr1:17932260-17932279 MsG0180001234.01.T01:CDS 40.0%
TTCTCTGACTTTGTCCTACA+TGG + Chr1:17934339-17934358 MsG0180001234.01.T01:CDS 40.0%
! GAAGGGTATACACCTTTGTT+TGG + Chr1:17932012-17932031 MsG0180001234.01.T01:CDS 40.0%
! GAGAGGAGATTTTCCATCAA+AGG + Chr1:17934218-17934237 MsG0180001234.01.T01:CDS 40.0%
! GTGTGATTTTGTCAAACTCG+CGG - Chr1:17932863-17932882 None:intergenic 40.0%
! TAGTGCAATTGATGGCACAT+TGG - Chr1:17932960-17932979 None:intergenic 40.0%
!! GGTGCTTTGCTTTGTTTATG+GGG - Chr1:17931672-17931691 None:intergenic 40.0%
!! TTTGTTCTGTTTTCAGGCTC+TGG + Chr1:17932177-17932196 MsG0180001234.01.T01:intron 40.0%
AGAGAGTGACGAGTGAATGA+AGG - Chr1:17931693-17931712 None:intergenic 45.0%
ATCGTCTCAACTCTTACGAC+AGG - Chr1:17933755-17933774 None:intergenic 45.0%
CACTTGGTCACATGCTCAAT+AGG - Chr1:17934378-17934397 None:intergenic 45.0%
CAGATACAAAGTCCCTCTAC+CGG + Chr1:17934512-17934531 MsG0180001234.01.T01:CDS 45.0%
CAGCGACACCTTTGATCAAA+GGG - Chr1:17932556-17932575 None:intergenic 45.0%
CCAAGTAGATGCATCCCATA+TGG - Chr1:17934262-17934281 None:intergenic 45.0%
CCATATGGGATGCATCTACT+TGG + Chr1:17934259-17934278 MsG0180001234.01.T01:CDS 45.0%
CCGGCCATTACCAAATGTAA+CGG - Chr1:17934586-17934605 None:intergenic 45.0%
CGGCCATTACCAAATGTAAC+GGG - Chr1:17934585-17934604 None:intergenic 45.0%
GATCAACTGCACAACCATGT+AGG - Chr1:17934356-17934375 None:intergenic 45.0%
TAGACTATGAAGCAGAGCCA+TGG - Chr1:17932454-17932473 None:intergenic 45.0%
TCAACTCTTACGACAGGGTT+CGG - Chr1:17933749-17933768 None:intergenic 45.0%
TCGTCTCAACTCTTACGACA+GGG - Chr1:17933754-17933773 None:intergenic 45.0%
! ACTTTGAGCACTGTCACACT+TGG - Chr1:17934394-17934413 None:intergenic 45.0%
!! AGTTGGTGGCTTATGACCAT+TGG + Chr1:17933597-17933616 MsG0180001234.01.T01:intron 45.0%
!! CCGTTACATTTGGTAATGGC+CGG + Chr1:17934583-17934602 MsG0180001234.01.T01:CDS 45.0%
!!! GGACTAGTCAGTGTCGTTTT+TGG - Chr1:17932496-17932515 None:intergenic 45.0%
ACCTTTGATCAAAGGGTGGC+TGG - Chr1:17932549-17932568 None:intergenic 50.0%
CGACACCTTTGATCAAAGGG+TGG - Chr1:17932553-17932572 None:intergenic 50.0%
CGGTAGAGGGACTTTGTATC+TGG - Chr1:17934514-17934533 None:intergenic 50.0%
CTTGTGGGTTCCTCCCTTTA+AGG - Chr1:17933570-17933589 None:intergenic 50.0%
GCAGCGACACCTTTGATCAA+AGG - Chr1:17932557-17932576 None:intergenic 50.0%
GCATCTACTTGGGCTACCAA+TGG + Chr1:17934270-17934289 MsG0180001234.01.T01:CDS 50.0%
TCCAGCCACCCTTTGATCAA+AGG + Chr1:17932545-17932564 MsG0180001234.01.T01:intron 50.0%
TCTACTTGGGCTACCAATGG+AGG + Chr1:17934273-17934292 MsG0180001234.01.T01:CDS 50.0%
TTTGGCGGTGTCTCTTTCCA+CGG - Chr1:17934614-17934633 None:intergenic 50.0%
! TCGATTCGCGACAAGCTGAA+AGG + Chr1:17934544-17934563 MsG0180001234.01.T01:CDS 50.0%
CGATCACACACTCCGGTAGA+GGG - Chr1:17934527-17934546 None:intergenic 55.0%
CGCGAATCGATCACACACTC+CGG - Chr1:17934534-17934553 None:intergenic 55.0%
TCGATCACACACTCCGGTAG+AGG - Chr1:17934528-17934547 None:intergenic 55.0%
CGTGTCGCGTCTAGTGTCCA+TGG + Chr1:17932434-17932453 MsG0180001234.01.T01:intron 60.0%
GTCTCTTTCCACGGTGGTGC+CGG - Chr1:17934605-17934624 None:intergenic 60.0%
GGCGGTGTCTCTTTCCACGG+TGG - Chr1:17934611-17934630 None:intergenic 65.0%
! GGTAATGGCCGGCACCACCG+TGG + Chr1:17934594-17934613 MsG0180001234.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 17931670 17935063 17931670 ID=MsG0180001234.01;Name=MsG0180001234.01
Chr1 mRNA 17931670 17935063 17931670 ID=MsG0180001234.01.T01;Parent=MsG0180001234.01;Name=MsG0180001234.01.T01;_AED=0.27;_eAED=0.27;_QI=291|1|1|1|1|1|4|410|311
Chr1 exon 17931670 17932099 17931670 ID=MsG0180001234.01.T01:exon:32314;Parent=MsG0180001234.01.T01
Chr1 exon 17932193 17932293 17932193 ID=MsG0180001234.01.T01:exon:32315;Parent=MsG0180001234.01.T01
Chr1 exon 17933040 17933248 17933040 ID=MsG0180001234.01.T01:exon:32316;Parent=MsG0180001234.01.T01
Chr1 exon 17934167 17935063 17934167 ID=MsG0180001234.01.T01:exon:32317;Parent=MsG0180001234.01.T01
Chr1 five_prime_UTR 17931670 17931960 17931670 ID=MsG0180001234.01.T01:five_prime_utr;Parent=MsG0180001234.01.T01
Chr1 CDS 17931961 17932099 17931961 ID=MsG0180001234.01.T01:cds;Parent=MsG0180001234.01.T01
Chr1 CDS 17932193 17932293 17932193 ID=MsG0180001234.01.T01:cds;Parent=MsG0180001234.01.T01
Chr1 CDS 17933040 17933248 17933040 ID=MsG0180001234.01.T01:cds;Parent=MsG0180001234.01.T01
Chr1 CDS 17934167 17934653 17934167 ID=MsG0180001234.01.T01:cds;Parent=MsG0180001234.01.T01
Chr1 three_prime_UTR 17934654 17935063 17934654 ID=MsG0180001234.01.T01:three_prime_utr;Parent=MsG0180001234.01.T01
Gene Sequence

>MsG0180001234.01.T01

ATGCCTTGTTACTCTGTTTCACCAAGAAATTTTGCTATTATACCTTTTGATGAAGGGTATACACCTTTGTTTGGAGACCATAACTTGATCATTCATTCTGATTCCAAAGCTGTTCATCTCTTACTTGATGAGTCTTCAGGCTCTGGATTTGCTTCTCATGATCTTTACCTTCATGGCTATTTTAGTGCTTCCATTAAATTACCTTCTGATTATACTGCTGGAGTTGTGGTTGCATTTTATTTGTCAAATGGTGACATGTATGAGAAGAACCATGATGAAATAGACTTTGAATTTTTGGGGAACATAAGAGGCAAAGATTGGAGGATTCAAACAAATGTTTATGGAAATGGAAGTACAAACATTGGAAGAGAAGAAAGATATGGTTTATGGTTTGATCCTTCTGAGGAATTTCATCAGTATAGTATTCTTTGGACAGATTCTAAGATAATATTTTATGTAGATGATGTTCCTGTCAGAGAAGTAAAGAGAACTGAGTCAATGAGAGGAGATTTTCCATCAAAGGCAATGACTTTGTATTCTACCATATGGGATGCATCTACTTGGGCTACCAATGGAGGAAAATACAAAGTAAACTACAAATATGCACCCTATATTGCTGAATTCTCTGACTTTGTCCTACATGGTTGTGCAGTTGATCCTATTGAGCATGTGACCAAGTGTGACAGTGCTCAAAGTTCAGAAACAGTTCCTTCTGATGTTTCACAAGTTGAAAGAATCAAAATGGAGAACTTTAGGTTCAAGCACATGACATACTCTTACTGTTATGACAAAACCAGATACAAAGTCCCTCTACCGGAGTGTGTGATCGATTCGCGACAAGCTGAAAGGCTGAGAAAATTTGATCCCGTTACATTTGGTAATGGCCGGCACCACCGTGGAAAGAGACACCGCCAAAACAAAGTTACTTCGTTTTAG

Protein sequence

>MsG0180001234.01.T01

MPCYSVSPRNFAIIPFDEGYTPLFGDHNLIIHSDSKAVHLLLDESSGSGFASHDLYLHGYFSASIKLPSDYTAGVVVAFYLSNGDMYEKNHDEIDFEFLGNIRGKDWRIQTNVYGNGSTNIGREERYGLWFDPSEEFHQYSILWTDSKIIFYVDDVPVREVKRTESMRGDFPSKAMTLYSTIWDASTWATNGGKYKVNYKYAPYIAEFSDFVLHGCAVDPIEHVTKCDSAQSSETVPSDVSQVERIKMENFRFKHMTYSYCYDKTRYKVPLPECVIDSRQAERLRKFDPVTFGNGRHHRGKRHRQNKVTSF*