Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001234.01.T01 | XP_013466651.1 | 97.428 | 311 | 8 | 0 | 1 | 311 | 18 | 328 | 0 | 639 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001234.01.T01 | Q38909 | 68.121 | 298 | 93 | 2 | 9 | 304 | 24 | 321 | 6.04E-156 | 442 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001234.01.T01 | A0A072VFV6 | 97.428 | 311 | 8 | 0 | 1 | 311 | 18 | 328 | 0.0 | 639 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048633.01 | MsG0180001234.01 | 0.832059 | 1.173024e-55 | 1.296559e-52 |
MsG0080048652.01 | MsG0180001234.01 | 0.832099 | 1.146971e-55 | 1.269143e-52 |
MsG0180001234.01 | MsG0280010296.01 | 0.820126 | 8.087743e-53 | 6.345012e-50 |
MsG0180001234.01 | MsG0280011403.01 | 0.806418 | 8.307559e-50 | 4.506661e-47 |
MsG0180001234.01 | MsG0380014881.01 | 0.814773 | 1.298773e-51 | 8.793398e-49 |
MsG0180001234.01 | MsG0380016008.01 | 0.804896 | 1.733162e-49 | 9.043532e-47 |
MsG0180001234.01 | MsG0380016018.01 | 0.812560 | 3.986915e-51 | 2.543127e-48 |
MsG0180001234.01 | MsG0380017231.01 | 0.829655 | 4.559271e-55 | 4.696133e-52 |
MsG0180001234.01 | MsG0480020263.01 | 0.832848 | 7.477111e-56 | 8.460024e-53 |
MsG0180001234.01 | MsG0480023195.01 | 0.829934 | 3.898716e-55 | 4.048381e-52 |
MsG0180001234.01 | MsG0580028924.01 | 0.801218 | 9.988666e-49 | 4.743820e-46 |
MsG0180001234.01 | MsG0580029623.01 | 0.811337 | 7.363032e-51 | 4.545369e-48 |
MsG0180001234.01 | MsG0780037751.01 | 0.819157 | 1.345779e-52 | 1.027523e-49 |
MsG0180001234.01 | MsG0780038810.01 | 0.818758 | 1.658072e-52 | 1.252188e-49 |
MsG0180001234.01 | MsG0880042046.01 | 0.811845 | 5.711094e-51 | 3.573333e-48 |
MsG0180001234.01 | MsG0880043948.01 | 0.803678 | 3.109037e-49 | 1.571961e-46 |
MsG0180001234.01 | MsG0880047170.01 | 0.810195 | 1.300670e-50 | 7.789856e-48 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001234.01.T01 | MTR_1g033420 | 97.428 | 311 | 8 | 0 | 1 | 311 | 18 | 328 | 0.0 | 639 |
MsG0180001234.01.T01 | MTR_5g029100 | 57.292 | 288 | 118 | 2 | 10 | 292 | 36 | 323 | 2.08e-121 | 352 |
MsG0180001234.01.T01 | MTR_5g029100 | 56.089 | 271 | 102 | 3 | 21 | 286 | 28 | 286 | 1.97e-107 | 315 |
MsG0180001234.01.T01 | MTR_8g090100 | 49.655 | 290 | 134 | 5 | 4 | 286 | 9 | 293 | 2.10e-98 | 293 |
MsG0180001234.01.T01 | MTR_8g064180 | 46.125 | 271 | 140 | 1 | 10 | 274 | 40 | 310 | 9.12e-84 | 255 |
MsG0180001234.01.T01 | MTR_4g057450 | 43.116 | 276 | 142 | 5 | 2 | 274 | 41 | 304 | 1.71e-72 | 226 |
MsG0180001234.01.T01 | MTR_2g095800 | 41.948 | 267 | 144 | 5 | 12 | 274 | 50 | 309 | 5.04e-67 | 212 |
MsG0180001234.01.T01 | MTR_1g063020 | 41.509 | 265 | 143 | 5 | 14 | 274 | 38 | 294 | 8.50e-66 | 209 |
MsG0180001234.01.T01 | MTR_7g102260 | 41.791 | 268 | 144 | 5 | 11 | 274 | 32 | 291 | 9.52e-65 | 206 |
MsG0180001234.01.T01 | MTR_8g013055 | 40.530 | 264 | 149 | 4 | 14 | 275 | 29 | 286 | 1.75e-63 | 202 |
MsG0180001234.01.T01 | MTR_7g084750 | 37.770 | 278 | 160 | 6 | 5 | 277 | 21 | 290 | 2.19e-59 | 192 |
MsG0180001234.01.T01 | MTR_6g033085 | 38.434 | 281 | 156 | 8 | 4 | 277 | 20 | 290 | 3.88e-59 | 191 |
MsG0180001234.01.T01 | MTR_4g097700 | 39.777 | 269 | 153 | 7 | 11 | 275 | 62 | 325 | 1.01e-57 | 189 |
MsG0180001234.01.T01 | MTR_4g097640 | 42.562 | 242 | 132 | 6 | 36 | 275 | 52 | 288 | 2.03e-57 | 187 |
MsG0180001234.01.T01 | MTR_4g097670 | 42.562 | 242 | 132 | 6 | 36 | 275 | 52 | 288 | 2.03e-57 | 187 |
MsG0180001234.01.T01 | MTR_7g084770 | 37.956 | 274 | 159 | 5 | 8 | 277 | 24 | 290 | 5.41e-57 | 186 |
MsG0180001234.01.T01 | MTR_7g084760 | 37.818 | 275 | 160 | 5 | 8 | 278 | 24 | 291 | 7.40e-57 | 186 |
MsG0180001234.01.T01 | MTR_6g033055 | 36.786 | 280 | 162 | 6 | 4 | 277 | 20 | 290 | 8.69e-57 | 185 |
MsG0180001234.01.T01 | MTR_2g089140 | 38.148 | 270 | 150 | 7 | 16 | 275 | 25 | 287 | 1.17e-55 | 182 |
MsG0180001234.01.T01 | MTR_5g091730 | 38.550 | 262 | 147 | 6 | 16 | 274 | 28 | 278 | 4.90e-55 | 181 |
MsG0180001234.01.T01 | MTR_4g045853 | 38.007 | 271 | 149 | 7 | 16 | 275 | 27 | 289 | 1.29e-54 | 180 |
MsG0180001234.01.T01 | MTR_1g105900 | 36.842 | 266 | 157 | 7 | 16 | 276 | 34 | 293 | 3.22e-54 | 179 |
MsG0180001234.01.T01 | MTR_4g126920 | 37.358 | 265 | 156 | 6 | 16 | 276 | 25 | 283 | 4.44e-54 | 178 |
MsG0180001234.01.T01 | MTR_4g128410 | 39.474 | 266 | 144 | 8 | 16 | 274 | 25 | 280 | 6.50e-54 | 177 |
MsG0180001234.01.T01 | MTR_1g105495 | 35.227 | 264 | 166 | 4 | 16 | 276 | 35 | 296 | 1.62e-53 | 177 |
MsG0180001234.01.T01 | MTR_7g093530 | 37.500 | 256 | 151 | 5 | 24 | 276 | 32 | 281 | 5.98e-52 | 172 |
MsG0180001234.01.T01 | MTR_7g056090 | 35.985 | 264 | 158 | 6 | 14 | 276 | 30 | 283 | 6.12e-52 | 172 |
MsG0180001234.01.T01 | MTR_4g128400 | 37.500 | 256 | 151 | 5 | 24 | 276 | 36 | 285 | 1.64e-51 | 172 |
MsG0180001234.01.T01 | MTR_4g128570 | 35.581 | 267 | 151 | 5 | 11 | 275 | 26 | 273 | 5.56e-51 | 170 |
MsG0180001234.01.T01 | MTR_2g049130 | 34.661 | 251 | 152 | 7 | 14 | 261 | 27 | 268 | 2.70e-50 | 168 |
MsG0180001234.01.T01 | MTR_4g128580 | 37.828 | 267 | 153 | 7 | 16 | 275 | 26 | 286 | 2.78e-50 | 168 |
MsG0180001234.01.T01 | MTR_3g089540 | 36.842 | 266 | 158 | 6 | 16 | 279 | 30 | 287 | 3.18e-50 | 168 |
MsG0180001234.01.T01 | MTR_2g089140 | 39.301 | 229 | 124 | 6 | 57 | 275 | 1 | 224 | 6.71e-50 | 166 |
MsG0180001234.01.T01 | MTR_3g084630 | 37.165 | 261 | 151 | 6 | 16 | 274 | 28 | 277 | 2.19e-49 | 166 |
MsG0180001234.01.T01 | MTR_3g084620 | 37.165 | 261 | 151 | 6 | 16 | 274 | 28 | 277 | 2.24e-49 | 166 |
MsG0180001234.01.T01 | MTR_2g049030 | 34.444 | 270 | 155 | 9 | 10 | 274 | 24 | 276 | 1.08e-48 | 164 |
MsG0180001234.01.T01 | MTR_6g088320 | 34.749 | 259 | 152 | 8 | 24 | 274 | 34 | 283 | 1.80e-48 | 164 |
MsG0180001234.01.T01 | MTR_2g038860 | 35.688 | 269 | 157 | 6 | 16 | 275 | 26 | 287 | 3.57e-48 | 163 |
MsG0180001234.01.T01 | MTR_2g038705 | 35.688 | 269 | 157 | 6 | 16 | 275 | 26 | 287 | 3.57e-48 | 163 |
MsG0180001234.01.T01 | MTR_8g081040 | 35.632 | 261 | 156 | 5 | 16 | 274 | 31 | 281 | 2.19e-46 | 158 |
MsG0180001234.01.T01 | MTR_8g102220 | 35.632 | 261 | 143 | 7 | 16 | 274 | 29 | 266 | 8.47e-46 | 156 |
MsG0180001234.01.T01 | MTR_8g102910 | 35.249 | 261 | 155 | 7 | 20 | 274 | 27 | 279 | 8.72e-46 | 157 |
MsG0180001234.01.T01 | MTR_4g128590 | 36.239 | 218 | 125 | 6 | 65 | 274 | 64 | 275 | 1.72e-40 | 142 |
MsG0180001234.01.T01 | MTR_8g032640 | 36.788 | 193 | 108 | 6 | 20 | 211 | 19 | 198 | 1.71e-21 | 90.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001234.01.T01 | AT1G14720 | 68.121 | 298 | 93 | 2 | 9 | 304 | 24 | 321 | 6.16e-157 | 442 |
MsG0180001234.01.T01 | AT2G01850 | 66.445 | 301 | 99 | 2 | 9 | 307 | 24 | 324 | 1.26e-152 | 431 |
MsG0180001234.01.T01 | AT1G32170 | 58.885 | 287 | 115 | 3 | 10 | 293 | 26 | 312 | 1.29e-121 | 353 |
MsG0180001234.01.T01 | AT4G18990 | 53.289 | 304 | 127 | 3 | 10 | 299 | 34 | 336 | 4.19e-111 | 326 |
MsG0180001234.01.T01 | AT4G18990 | 52.155 | 232 | 96 | 3 | 82 | 299 | 32 | 262 | 8.43e-82 | 249 |
MsG0180001234.01.T01 | AT1G10550 | 44.891 | 274 | 139 | 2 | 11 | 274 | 38 | 309 | 4.41e-81 | 248 |
MsG0180001234.01.T01 | AT4G13090 | 44.815 | 270 | 139 | 5 | 9 | 274 | 25 | 288 | 2.84e-71 | 223 |
MsG0180001234.01.T01 | AT4G13080 | 41.544 | 272 | 153 | 3 | 3 | 274 | 26 | 291 | 9.64e-69 | 216 |
MsG0180001234.01.T01 | AT3G25050 | 40.377 | 265 | 148 | 5 | 13 | 274 | 32 | 289 | 4.02e-65 | 207 |
MsG0180001234.01.T01 | AT5G13870 | 38.710 | 279 | 160 | 5 | 3 | 277 | 19 | 290 | 7.27e-64 | 204 |
MsG0180001234.01.T01 | AT5G13870 | 38.710 | 279 | 160 | 5 | 3 | 277 | 19 | 290 | 7.27e-64 | 204 |
MsG0180001234.01.T01 | AT5G13870 | 38.710 | 279 | 160 | 5 | 3 | 277 | 19 | 290 | 7.27e-64 | 204 |
MsG0180001234.01.T01 | AT3G44990 | 40.304 | 263 | 147 | 4 | 15 | 274 | 38 | 293 | 1.58e-63 | 202 |
MsG0180001234.01.T01 | AT2G36870 | 40.840 | 262 | 145 | 4 | 16 | 274 | 43 | 297 | 3.00e-63 | 202 |
MsG0180001234.01.T01 | AT5G65730 | 41.445 | 263 | 143 | 6 | 16 | 274 | 35 | 290 | 2.07e-62 | 200 |
MsG0180001234.01.T01 | AT2G06850 | 40.647 | 278 | 152 | 7 | 5 | 277 | 24 | 293 | 4.11e-62 | 199 |
MsG0180001234.01.T01 | AT4G37800 | 40.304 | 263 | 146 | 6 | 16 | 274 | 34 | 289 | 1.14e-61 | 198 |
MsG0180001234.01.T01 | AT4G03210 | 40.152 | 264 | 145 | 6 | 16 | 274 | 29 | 284 | 5.92e-59 | 191 |
MsG0180001234.01.T01 | AT4G03210 | 41.126 | 231 | 127 | 4 | 48 | 274 | 31 | 256 | 6.40e-56 | 182 |
MsG0180001234.01.T01 | AT2G06850 | 42.797 | 236 | 124 | 5 | 46 | 277 | 5 | 233 | 8.90e-56 | 181 |
MsG0180001234.01.T01 | AT1G11545 | 36.131 | 274 | 152 | 6 | 16 | 276 | 38 | 301 | 6.78e-54 | 178 |
MsG0180001234.01.T01 | AT4G25810 | 39.382 | 259 | 142 | 8 | 24 | 275 | 34 | 284 | 1.49e-53 | 177 |
MsG0180001234.01.T01 | AT5G57560 | 37.984 | 258 | 148 | 6 | 24 | 275 | 31 | 282 | 4.65e-52 | 173 |
MsG0180001234.01.T01 | AT5G57550 | 37.786 | 262 | 151 | 7 | 16 | 274 | 30 | 282 | 3.84e-51 | 171 |
MsG0180001234.01.T01 | AT3G23730 | 36.981 | 265 | 156 | 5 | 16 | 274 | 27 | 286 | 5.29e-51 | 170 |
MsG0180001234.01.T01 | AT4G14130 | 37.405 | 262 | 155 | 6 | 16 | 274 | 29 | 284 | 1.47e-49 | 167 |
MsG0180001234.01.T01 | AT4G30270 | 37.209 | 258 | 139 | 6 | 24 | 278 | 32 | 269 | 4.44e-49 | 165 |
MsG0180001234.01.T01 | AT2G18800 | 34.965 | 286 | 158 | 6 | 16 | 282 | 28 | 304 | 4.66e-49 | 166 |
MsG0180001234.01.T01 | AT5G48070 | 37.500 | 248 | 142 | 7 | 30 | 274 | 44 | 281 | 6.76e-49 | 165 |
MsG0180001234.01.T01 | AT4G28850 | 34.799 | 273 | 164 | 8 | 9 | 274 | 22 | 287 | 1.77e-48 | 164 |
MsG0180001234.01.T01 | AT2G14620 | 36.255 | 251 | 145 | 8 | 33 | 276 | 54 | 296 | 1.91e-48 | 164 |
MsG0180001234.01.T01 | AT5G57530 | 37.450 | 251 | 146 | 7 | 31 | 277 | 42 | 285 | 4.51e-48 | 162 |
MsG0180001234.01.T01 | AT4G30290 | 39.655 | 232 | 125 | 7 | 47 | 274 | 56 | 276 | 1.59e-47 | 161 |
MsG0180001234.01.T01 | AT4G30280 | 38.528 | 231 | 129 | 6 | 47 | 274 | 61 | 281 | 1.98e-47 | 161 |
MsG0180001234.01.T01 | AT5G57540 | 35.338 | 266 | 161 | 7 | 16 | 277 | 26 | 284 | 2.73e-47 | 160 |
MsG0180001234.01.T01 | AT1G65310 | 38.281 | 256 | 144 | 7 | 24 | 275 | 37 | 282 | 2.71e-46 | 158 |
MsG0180001234.01.T01 | AT1G65310 | 38.281 | 256 | 144 | 7 | 24 | 275 | 59 | 304 | 4.85e-46 | 158 |
MsG0180001234.01.T01 | AT2G14620 | 36.287 | 237 | 136 | 8 | 47 | 276 | 18 | 246 | 2.51e-45 | 154 |
MsG0180001234.01.T01 | AT2G14620 | 36.404 | 228 | 130 | 8 | 56 | 276 | 16 | 235 | 1.94e-43 | 149 |
MsG0180001234.01.T01 | AT4G25820 | 34.091 | 264 | 165 | 5 | 16 | 276 | 30 | 287 | 3.01e-42 | 147 |
MsG0180001234.01.T01 | AT3G48580 | 32.453 | 265 | 156 | 11 | 12 | 274 | 30 | 273 | 4.22e-36 | 131 |
MsG0180001234.01.T01 | AT2G36870 | 45.652 | 138 | 70 | 2 | 16 | 150 | 43 | 178 | 6.87e-33 | 120 |
MsG0180001234.01.T01 | AT3G48580 | 33.333 | 231 | 132 | 10 | 46 | 274 | 4 | 214 | 6.17e-32 | 119 |
MsG0180001234.01.T01 | AT3G48580 | 29.434 | 265 | 144 | 12 | 12 | 274 | 30 | 253 | 6.05e-23 | 95.9 |
Find 84 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGATTCAAACAAATGTTTA+TGG | 0.147337 | 1:+17933121 | MsG0180001234.01.T01:CDS |
AGATCAAATATTTGTATTAA+AGG | 0.173962 | 1:-17935042 | None:intergenic |
GAGAAGAAAGATATGGTTTA+TGG | 0.194534 | 1:+17933167 | MsG0180001234.01.T01:CDS |
CACCATCTCTTTAGGTTATT+AGG | 0.195008 | 1:+17934917 | MsG0180001234.01.T01:three_prime_UTR |
TTCATCAGTATAGTATTCTT+TGG | 0.249093 | 1:+17933209 | MsG0180001234.01.T01:CDS |
TCTCATGATCTTTACCTTCA+TGG | 0.260057 | 1:+17932207 | MsG0180001234.01.T01:CDS |
TAATAATCATATAACTATTA+TGG | 0.268777 | 1:-17934859 | None:intergenic |
GAATCAAAATGGAGAACTTT+AGG | 0.272268 | 1:+17934451 | MsG0180001234.01.T01:CDS |
ACAAGTTGAAAGAATCAAAA+TGG | 0.279907 | 1:+17934440 | MsG0180001234.01.T01:CDS |
TACAAAGTCATTGCCTTTGA+TGG | 0.283691 | 1:-17934231 | None:intergenic |
CTCTTACTTGATGAGTCTTC+AGG | 0.286306 | 1:+17932078 | MsG0180001234.01.T01:CDS |
GTATAGTTCACCATCTCTTT+AGG | 0.293755 | 1:+17934909 | MsG0180001234.01.T01:three_prime_UTR |
CAAACAAATGTTTATGGAAA+TGG | 0.295488 | 1:+17933127 | MsG0180001234.01.T01:CDS |
AAAACGAAGTAACTTTGTTT+TGG | 0.306141 | 1:-17934629 | None:intergenic |
GGTATAATAGCAAAATTTCT+TGG | 0.312439 | 1:-17931982 | None:intergenic |
ATAATCAGAAGGTAATTTAA+TGG | 0.316688 | 1:-17932244 | None:intergenic |
GTTCAACAAAATCAAAATTA+TGG | 0.319332 | 1:+17934676 | MsG0180001234.01.T01:three_prime_UTR |
AAGGTGCTTTGCTTTGTTTA+TGG | 0.324087 | 1:-17931671 | None:intergenic |
GTCAGAGAATTCAGCAATAT+AGG | 0.324857 | 1:-17934325 | None:intergenic |
AGGTGCTTTGCTTTGTTTAT+GGG | 0.334332 | 1:-17931670 | None:intergenic |
CGGTAGAGGGACTTTGTATC+TGG | 0.344053 | 1:-17934511 | None:intergenic |
GAAGGGTATACACCTTTGTT+TGG | 0.357285 | 1:+17932012 | MsG0180001234.01.T01:CDS |
TGACTTTGTATTCTACCATA+TGG | 0.360868 | 1:+17934244 | MsG0180001234.01.T01:CDS |
CCATATGGGATGCATCTACT+TGG | 0.374925 | 1:+17934259 | MsG0180001234.01.T01:CDS |
AAATTTGATCCCGTTACATT+TGG | 0.384702 | 1:+17934573 | MsG0180001234.01.T01:CDS |
GTCTCTTTCCACGGTGGTGC+CGG | 0.385909 | 1:-17934602 | None:intergenic |
CACTTGGTCACATGCTCAAT+AGG | 0.402506 | 1:-17934375 | None:intergenic |
TTCTCTGACTTTGTCCTACA+TGG | 0.411675 | 1:+17934339 | MsG0180001234.01.T01:CDS |
ATTGGAAGAGAAGAAAGATA+TGG | 0.430520 | 1:+17933160 | MsG0180001234.01.T01:CDS |
GAGAGAAGAGAAAGAAAAGA+AGG | 0.433086 | 1:-17931741 | None:intergenic |
TTACCTTCTGATTATACTGC+TGG | 0.434184 | 1:+17932252 | MsG0180001234.01.T01:CDS |
GACTTTGTATTCTACCATAT+GGG | 0.438803 | 1:+17934245 | MsG0180001234.01.T01:CDS |
TCAGAGAATTCAGCAATATA+GGG | 0.440728 | 1:-17934324 | None:intergenic |
GATCCCGTTACATTTGGTAA+TGG | 0.449715 | 1:+17934579 | MsG0180001234.01.T01:CDS |
TTTATTCTGCAGTTGTCAAA+TGG | 0.450372 | 1:+17933028 | MsG0180001234.01.T01:intron |
CAGAATGAATGATCAAGTTA+TGG | 0.454056 | 1:-17932038 | None:intergenic |
ATATGATTATTAATTAATGC+TGG | 0.455084 | 1:+17934870 | MsG0180001234.01.T01:three_prime_UTR |
GGTGTATACCCTTCATCAAA+AGG | 0.456262 | 1:-17932003 | None:intergenic |
TAGCTTACATATGACACAAA+GGG | 0.472745 | 1:-17934999 | None:intergenic |
GGAACATAAGAGGCAAAGAT+TGG | 0.477793 | 1:+17933098 | MsG0180001234.01.T01:CDS |
CCAAGTAGATGCATCCCATA+TGG | 0.478573 | 1:-17934259 | None:intergenic |
AAGTAAGAGATGAACAGCTT+TGG | 0.482296 | 1:-17932064 | None:intergenic |
TCGATCACACACTCCGGTAG+AGG | 0.485145 | 1:-17934525 | None:intergenic |
GAGAAGAAGAATATAACAAG+AGG | 0.485626 | 1:-17931719 | None:intergenic |
TTTGGTGTATAGAGATAAGA+GGG | 0.489836 | 1:+17934820 | MsG0180001234.01.T01:three_prime_UTR |
ATTCAAAGTCTATTTCATCA+TGG | 0.490439 | 1:-17933069 | None:intergenic |
CCGTTACATTTGGTAATGGC+CGG | 0.501258 | 1:+17934583 | MsG0180001234.01.T01:CDS |
TGATTATTAATTAATGCTGG+TGG | 0.502207 | 1:+17934873 | MsG0180001234.01.T01:three_prime_UTR |
CGGCCATTACCAAATGTAAC+GGG | 0.507577 | 1:-17934582 | None:intergenic |
AGAAGAAGAATATAACAAGA+GGG | 0.513988 | 1:-17931718 | None:intergenic |
TGATTATACTGCTGGAGTTG+TGG | 0.518642 | 1:+17932260 | MsG0180001234.01.T01:CDS |
TTTGGCGGTGTCTCTTTCCA+CGG | 0.520645 | 1:-17934611 | None:intergenic |
GTTCTCTTTACTTCTCTGAC+AGG | 0.527307 | 1:-17934186 | None:intergenic |
ACTTTGAGCACTGTCACACT+TGG | 0.532982 | 1:-17934391 | None:intergenic |
GATTATTAATTAATGCTGGT+GGG | 0.534378 | 1:+17934874 | MsG0180001234.01.T01:three_prime_UTR |
AGAGAGTGACGAGTGAATGA+AGG | 0.549135 | 1:-17931690 | None:intergenic |
GGAAATGGAAGTACAAACAT+TGG | 0.549278 | 1:+17933142 | MsG0180001234.01.T01:CDS |
AAGCACTAAAATAGCCATGA+AGG | 0.555543 | 1:-17932221 | None:intergenic |
GCATCTACTTGGGCTACCAA+TGG | 0.559060 | 1:+17934270 | MsG0180001234.01.T01:CDS |
TCTCTATACACCAAAATGAA+AGG | 0.561408 | 1:-17934812 | None:intergenic |
TCGATTCGCGACAAGCTGAA+AGG | 0.568686 | 1:+17934544 | MsG0180001234.01.T01:CDS |
GAAGAAGAATATAACAAGAG+GGG | 0.575879 | 1:-17931717 | None:intergenic |
TACTGATGAAATTCCTCAGA+AGG | 0.576854 | 1:-17933196 | None:intergenic |
CCGGCCATTACCAAATGTAA+CGG | 0.580145 | 1:-17934583 | None:intergenic |
CGATCACACACTCCGGTAGA+GGG | 0.581239 | 1:-17934524 | None:intergenic |
ACATAAGAGGCAAAGATTGG+AGG | 0.581414 | 1:+17933101 | MsG0180001234.01.T01:CDS |
TACCTAATAACCTAAAGAGA+TGG | 0.581873 | 1:-17934919 | None:intergenic |
CAACAAAATCAAAATTATGG+TGG | 0.583041 | 1:+17934679 | MsG0180001234.01.T01:three_prime_UTR |
CAGATACAAAGTCCCTCTAC+CGG | 0.595007 | 1:+17934512 | MsG0180001234.01.T01:CDS |
CTTGGTGAAACAGAGTAACA+AGG | 0.597670 | 1:-17931964 | None:intergenic |
TCAACTTGTGAAACATCAGA+AGG | 0.600465 | 1:-17934426 | None:intergenic |
TCTACTTGGGCTACCAATGG+AGG | 0.600953 | 1:+17934273 | MsG0180001234.01.T01:CDS |
TTTATGGTTTGATCCTTCTG+AGG | 0.601961 | 1:+17933183 | MsG0180001234.01.T01:CDS |
CATATGGGATGCATCTACTT+GGG | 0.612597 | 1:+17934260 | MsG0180001234.01.T01:CDS |
GATCAACTGCACAACCATGT+AGG | 0.614567 | 1:-17934353 | None:intergenic |
AAGAGAACTGAGTCAATGAG+AGG | 0.626190 | 1:+17934201 | MsG0180001234.01.T01:CDS |
ACTCCAGCAGTATAATCAGA+AGG | 0.629305 | 1:-17932255 | None:intergenic |
ATAGCTTACATATGACACAA+AGG | 0.639475 | 1:-17935000 | None:intergenic |
GGCGGTGTCTCTTTCCACGG+TGG | 0.643693 | 1:-17934608 | None:intergenic |
AAGTTATGGTCTCCAAACAA+AGG | 0.651449 | 1:-17932024 | None:intergenic |
CGCGAATCGATCACACACTC+CGG | 0.652371 | 1:-17934531 | None:intergenic |
AGCTTACATATGACACAAAG+GGG | 0.667046 | 1:-17934998 | None:intergenic |
TTGGTGTATAGAGATAAGAG+GGG | 0.681522 | 1:+17934821 | MsG0180001234.01.T01:three_prime_UTR |
GGTAATGGCCGGCACCACCG+TGG | 0.687743 | 1:+17934594 | MsG0180001234.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTAATTAAATTATTAAAAA+TGG | - | Chr1:17932628-17932647 | None:intergenic | 0.0% |
!! | TAATAATCATATAACTATTA+TGG | - | Chr1:17934862-17934881 | None:intergenic | 10.0% |
!! | AACTAAATATAGCATATTAA+GGG | - | Chr1:17933273-17933292 | None:intergenic | 15.0% |
!! | ATATGATTATTAATTAATGC+TGG | + | Chr1:17934870-17934889 | MsG0180001234.01.T01:three_prime_UTR | 15.0% |
!! | TAAAATACAACTAAAAAACA+CGG | - | Chr1:17933892-17933911 | None:intergenic | 15.0% |
!! | TAACTAAATATAGCATATTA+AGG | - | Chr1:17933274-17933293 | None:intergenic | 15.0% |
!! | TATCTCTCAAATTTATATAA+AGG | - | Chr1:17934029-17934048 | None:intergenic | 15.0% |
!! | TATGTATATATATCCTTAAA+GGG | + | Chr1:17933554-17933573 | MsG0180001234.01.T01:intron | 15.0% |
!! | TTATGTATATATATCCTTAA+AGG | + | Chr1:17933553-17933572 | MsG0180001234.01.T01:intron | 15.0% |
!! | TTTATATAAATTTGAGAGAT+AGG | + | Chr1:17934028-17934047 | MsG0180001234.01.T01:intron | 15.0% |
!!! | ATTTTTTTCTTCCATTTTTT+AGG | - | Chr1:17932989-17933008 | None:intergenic | 15.0% |
!! | AATGTTAATAATGAGGTTTA+GGG | + | Chr1:17933780-17933799 | MsG0180001234.01.T01:intron | 20.0% |
!! | ACGAAACAAAAAAAAAAACA+TGG | + | Chr1:17931893-17931912 | MsG0180001234.01.T01:five_prime_UTR | 20.0% |
!! | ATAATCAGAAGGTAATTTAA+TGG | - | Chr1:17932247-17932266 | None:intergenic | 20.0% |
!! | CTTGAGAAAATAATTTGAAT+GGG | + | Chr1:17932520-17932539 | MsG0180001234.01.T01:intron | 20.0% |
!! | GATTTAATGATTGAAAAACA+CGG | + | Chr1:17933917-17933936 | MsG0180001234.01.T01:intron | 20.0% |
!! | GTTCAACAAAATCAAAATTA+TGG | + | Chr1:17934676-17934695 | MsG0180001234.01.T01:three_prime_UTR | 20.0% |
!! | TCTTGAGAAAATAATTTGAA+TGG | + | Chr1:17932519-17932538 | MsG0180001234.01.T01:intron | 20.0% |
!!! | AAATAGACTTTGAATTTTTG+GGG | + | Chr1:17933077-17933096 | MsG0180001234.01.T01:CDS | 20.0% |
!!! | ATGTTAATGGTTAATTTGTT+AGG | - | Chr1:17933812-17933831 | None:intergenic | 20.0% |
!!! | CACTAATTTTACCTAAAAAA+TGG | + | Chr1:17932975-17932994 | MsG0180001234.01.T01:intron | 20.0% |
!!! | GAAATAGACTTTGAATTTTT+GGG | + | Chr1:17933076-17933095 | MsG0180001234.01.T01:CDS | 20.0% |
!!! | GGTAATTTTATCATTTAATG+TGG | + | Chr1:17934938-17934957 | MsG0180001234.01.T01:three_prime_UTR | 20.0% |
!!! | GTGTTTTTCAATCATTAAAT+CGG | - | Chr1:17933918-17933937 | None:intergenic | 20.0% |
!!! | TGAAATAGACTTTGAATTTT+TGG | + | Chr1:17933075-17933094 | MsG0180001234.01.T01:CDS | 20.0% |
!!! | TTTAGTCTTTATGATGATAA+AGG | + | Chr1:17932689-17932708 | MsG0180001234.01.T01:intron | 20.0% |
! | AGAAGAAGAATATAACAAGA+GGG | - | Chr1:17931721-17931740 | None:intergenic | 25.0% |
! | AGGATTCAAACAAATGTTTA+TGG | + | Chr1:17933121-17933140 | MsG0180001234.01.T01:CDS | 25.0% |
! | ATGAACGAATGTTAATAATG+AGG | + | Chr1:17933773-17933792 | MsG0180001234.01.T01:intron | 25.0% |
! | ATTCAAAGTCTATTTCATCA+TGG | - | Chr1:17933072-17933091 | None:intergenic | 25.0% |
! | CAAACAAATGTTTATGGAAA+TGG | + | Chr1:17933127-17933146 | MsG0180001234.01.T01:CDS | 25.0% |
! | CAACAAAATCAAAATTATGG+TGG | + | Chr1:17934679-17934698 | MsG0180001234.01.T01:three_prime_UTR | 25.0% |
! | GAATGTTAATAATGAGGTTT+AGG | + | Chr1:17933779-17933798 | MsG0180001234.01.T01:intron | 25.0% |
! | GATTATTAATTAATGCTGGT+GGG | + | Chr1:17934874-17934893 | MsG0180001234.01.T01:three_prime_UTR | 25.0% |
! | GATTGCTAATTCATGAATTT+AGG | - | Chr1:17933684-17933703 | None:intergenic | 25.0% |
! | GGTATAATAGCAAAATTTCT+TGG | - | Chr1:17931985-17932004 | None:intergenic | 25.0% |
! | TAGATCATTAGTATATGATG+AGG | - | Chr1:17932307-17932326 | None:intergenic | 25.0% |
! | TAGTCTATAAAACACTAACA+TGG | + | Chr1:17932467-17932486 | MsG0180001234.01.T01:intron | 25.0% |
! | TATAAAGTTCAGATGACATA+TGG | - | Chr1:17933526-17933545 | None:intergenic | 25.0% |
! | TGATTATTAATTAATGCTGG+TGG | + | Chr1:17934873-17934892 | MsG0180001234.01.T01:three_prime_UTR | 25.0% |
! | TTAGAAATTCAACGTAATCA+TGG | - | Chr1:17932891-17932910 | None:intergenic | 25.0% |
! | TTATAAAGATTCCAATACCT+AGG | - | Chr1:17933630-17933649 | None:intergenic | 25.0% |
! | TTCATCAGTATAGTATTCTT+TGG | + | Chr1:17933209-17933228 | MsG0180001234.01.T01:CDS | 25.0% |
! | TTCTTATAGGCAAATGTTAA+TGG | - | Chr1:17933825-17933844 | None:intergenic | 25.0% |
!! | AATATCAAACAGACTTTTGA+TGG | - | Chr1:17932770-17932789 | None:intergenic | 25.0% |
!! | ACAAGTTGAAAGAATCAAAA+TGG | + | Chr1:17934440-17934459 | MsG0180001234.01.T01:CDS | 25.0% |
!! | ATGTACAATTTTTGCATTGA+TGG | + | Chr1:17933479-17933498 | MsG0180001234.01.T01:intron | 25.0% |
!! | CAAATTATTTTCTCAAGATG+TGG | - | Chr1:17932517-17932536 | None:intergenic | 25.0% |
!! | CTATTATACCTTTTGATGAA+GGG | + | Chr1:17931995-17932014 | MsG0180001234.01.T01:CDS | 25.0% |
!! | GTCACAGAAATTTTTCTTAA+GGG | - | Chr1:17931824-17931843 | None:intergenic | 25.0% |
!! | TGTCACAGAAATTTTTCTTA+AGG | - | Chr1:17931825-17931844 | None:intergenic | 25.0% |
!! | TTCGACTAATTTTCATCTAA+TGG | - | Chr1:17933869-17933888 | None:intergenic | 25.0% |
!!! | AAAACGAAGTAACTTTGTTT+TGG | - | Chr1:17934632-17934651 | None:intergenic | 25.0% |
!!! | TTTTGAAAGAAACTGTCATT+TGG | + | Chr1:17932789-17932808 | MsG0180001234.01.T01:intron | 25.0% |
AAATTTGATCCCGTTACATT+TGG | + | Chr1:17934573-17934592 | MsG0180001234.01.T01:CDS | 30.0% | |
AACCCACAAGATAAAAAAGT+TGG | + | Chr1:17933580-17933599 | MsG0180001234.01.T01:intron | 30.0% | |
ACATAATTCGCTGTAACATT+TGG | - | Chr1:17932386-17932405 | None:intergenic | 30.0% | |
ATACCTAGGAATTTATCCAA+TGG | - | Chr1:17933616-17933635 | None:intergenic | 30.0% | |
ATAGCTTACATATGACACAA+AGG | - | Chr1:17935003-17935022 | None:intergenic | 30.0% | |
ATTGGAAGAGAAGAAAGATA+TGG | + | Chr1:17933160-17933179 | MsG0180001234.01.T01:CDS | 30.0% | |
CAGAATGAATGATCAAGTTA+TGG | - | Chr1:17932041-17932060 | None:intergenic | 30.0% | |
GAAGAAGAATATAACAAGAG+GGG | - | Chr1:17931720-17931739 | None:intergenic | 30.0% | |
GAATCAAAATGGAGAACTTT+AGG | + | Chr1:17934451-17934470 | MsG0180001234.01.T01:CDS | 30.0% | |
GACTTTGTATTCTACCATAT+GGG | + | Chr1:17934245-17934264 | MsG0180001234.01.T01:CDS | 30.0% | |
GAGAAGAAAGATATGGTTTA+TGG | + | Chr1:17933167-17933186 | MsG0180001234.01.T01:CDS | 30.0% | |
GAGAAGAAGAATATAACAAG+AGG | - | Chr1:17931722-17931741 | None:intergenic | 30.0% | |
GGTAAAATTAGTGCAATTGA+TGG | - | Chr1:17932968-17932987 | None:intergenic | 30.0% | |
GTATATATATCCTTAAAGGG+AGG | + | Chr1:17933557-17933576 | MsG0180001234.01.T01:intron | 30.0% | |
TACCTAATAACCTAAAGAGA+TGG | - | Chr1:17934922-17934941 | None:intergenic | 30.0% | |
TAGCTTACATATGACACAAA+GGG | - | Chr1:17935002-17935021 | None:intergenic | 30.0% | |
TATGAAACATAGACACTTCT+CGG | + | Chr1:17932332-17932351 | MsG0180001234.01.T01:intron | 30.0% | |
TCAGAGAATTCAGCAATATA+GGG | - | Chr1:17934327-17934346 | None:intergenic | 30.0% | |
TCTCTATACACCAAAATGAA+AGG | - | Chr1:17934815-17934834 | None:intergenic | 30.0% | |
TGACTTTGTATTCTACCATA+TGG | + | Chr1:17934244-17934263 | MsG0180001234.01.T01:CDS | 30.0% | |
TGCGGATACATATTTCTTAT+AGG | - | Chr1:17933838-17933857 | None:intergenic | 30.0% | |
TTGGATAAATTCCTAGGTAT+TGG | + | Chr1:17933616-17933635 | MsG0180001234.01.T01:intron | 30.0% | |
TTTATTCTGCAGTTGTCAAA+TGG | + | Chr1:17933028-17933047 | MsG0180001234.01.T01:intron | 30.0% | |
! | ACAGACTTTTGATGGAAAAA+AGG | - | Chr1:17932762-17932781 | None:intergenic | 30.0% |
! | ATCTCTTTTGCCTTTCATTT+TGG | + | Chr1:17934802-17934821 | MsG0180001234.01.T01:three_prime_UTR | 30.0% |
! | CAGACTTTTGATGGAAAAAA+GGG | - | Chr1:17932761-17932780 | None:intergenic | 30.0% |
! | GCTATTATACCTTTTGATGA+AGG | + | Chr1:17931994-17932013 | MsG0180001234.01.T01:CDS | 30.0% |
! | TACTTTGTATTTTCCTCCAT+TGG | - | Chr1:17934289-17934308 | None:intergenic | 30.0% |
! | TGAACAAAAAGTACAAGCAA+GGG | - | Chr1:17933373-17933392 | None:intergenic | 30.0% |
! | TTGAACAAAAAGTACAAGCA+AGG | - | Chr1:17933374-17933393 | None:intergenic | 30.0% |
! | TTTGGTGTATAGAGATAAGA+GGG | + | Chr1:17934820-17934839 | MsG0180001234.01.T01:three_prime_UTR | 30.0% |
!! | TTGTGTTTTGTTCTGTTTTC+AGG | + | Chr1:17932171-17932190 | MsG0180001234.01.T01:intron | 30.0% |
!! | TTTTGGTGTATAGAGATAAG+AGG | + | Chr1:17934819-17934838 | MsG0180001234.01.T01:three_prime_UTR | 30.0% |
!!! | AACTGGTTTTTGCTTTTAGT+AGG | + | Chr1:17933447-17933466 | MsG0180001234.01.T01:intron | 30.0% |
!!! | CACCAACTTTTTTATCTTGT+GGG | - | Chr1:17933585-17933604 | None:intergenic | 30.0% |
!!! | TGTTTTAGTGCATGTTTGTT+TGG | - | Chr1:17934733-17934752 | None:intergenic | 30.0% |
AAAGATTGACAAAATCGCGA+TGG | + | Chr1:17932932-17932951 | MsG0180001234.01.T01:intron | 35.0% | |
AAATCTGTGGATGTGGTAAA+TGG | - | Chr1:17933422-17933441 | None:intergenic | 35.0% | |
AAGCACTAAAATAGCCATGA+AGG | - | Chr1:17932224-17932243 | None:intergenic | 35.0% | |
AAGTAAGAGATGAACAGCTT+TGG | - | Chr1:17932067-17932086 | None:intergenic | 35.0% | |
AAGTTATGGTCTCCAAACAA+AGG | - | Chr1:17932027-17932046 | None:intergenic | 35.0% | |
ACCATTGGATGAAGATAAGA+CGG | - | Chr1:17933944-17933963 | None:intergenic | 35.0% | |
AGCTTACATATGACACAAAG+GGG | - | Chr1:17935001-17935020 | None:intergenic | 35.0% | |
ATCCACAGATTTGTGAAAAC+TGG | + | Chr1:17933430-17933449 | MsG0180001234.01.T01:intron | 35.0% | |
CATCTAATGGTCTAGATTTG+CGG | - | Chr1:17933856-17933875 | None:intergenic | 35.0% | |
CCACAAGATAAAAAAGTTGG+TGG | + | Chr1:17933583-17933602 | MsG0180001234.01.T01:intron | 35.0% | |
GAGAGAAGAGAAAGAAAAGA+AGG | - | Chr1:17931744-17931763 | None:intergenic | 35.0% | |
GCTGTTGCAAATTTAACCAT+TGG | - | Chr1:17933959-17933978 | None:intergenic | 35.0% | |
GTATAGTTCACCATCTCTTT+AGG | + | Chr1:17934909-17934928 | MsG0180001234.01.T01:three_prime_UTR | 35.0% | |
GTCAGAGAATTCAGCAATAT+AGG | - | Chr1:17934328-17934347 | None:intergenic | 35.0% | |
TACAAAGTCATTGCCTTTGA+TGG | - | Chr1:17934234-17934253 | None:intergenic | 35.0% | |
TACTGATGAAATTCCTCAGA+AGG | - | Chr1:17933199-17933218 | None:intergenic | 35.0% | |
TCAACTTGTGAAACATCAGA+AGG | - | Chr1:17934429-17934448 | None:intergenic | 35.0% | |
TCTCATGATCTTTACCTTCA+TGG | + | Chr1:17932207-17932226 | MsG0180001234.01.T01:CDS | 35.0% | |
TGACCATTGGATAAATTCCT+AGG | + | Chr1:17933610-17933629 | MsG0180001234.01.T01:intron | 35.0% | |
TTACCTTCTGATTATACTGC+TGG | + | Chr1:17932252-17932271 | MsG0180001234.01.T01:CDS | 35.0% | |
TTGGTGTATAGAGATAAGAG+GGG | + | Chr1:17934821-17934840 | MsG0180001234.01.T01:three_prime_UTR | 35.0% | |
TTGTTCCTTAGTTACCAAGT+AGG | + | Chr1:17933709-17933728 | MsG0180001234.01.T01:intron | 35.0% | |
TTTATGGTTTGATCCTTCTG+AGG | + | Chr1:17933183-17933202 | MsG0180001234.01.T01:CDS | 35.0% | |
! | AAAAAGTACAAGCAAGGGAA+TGG | - | Chr1:17933368-17933387 | None:intergenic | 35.0% |
! | AACCAGTTTTCACAAATCTG+TGG | - | Chr1:17933435-17933454 | None:intergenic | 35.0% |
! | CACCATCTCTTTAGGTTATT+AGG | + | Chr1:17934917-17934936 | MsG0180001234.01.T01:three_prime_UTR | 35.0% |
! | GGAAATGGAAGTACAAACAT+TGG | + | Chr1:17933142-17933161 | MsG0180001234.01.T01:CDS | 35.0% |
! | TGAAACCTACTTGGTAACTA+AGG | - | Chr1:17933717-17933736 | None:intergenic | 35.0% |
! | TTTTCACAAATCTGTGGATG+TGG | - | Chr1:17933429-17933448 | None:intergenic | 35.0% |
!! | AAGGTGCTTTGCTTTGTTTA+TGG | - | Chr1:17931674-17931693 | None:intergenic | 35.0% |
!! | ACTTCGTTTTAGTGCATGTT+TGG | + | Chr1:17934642-17934661 | MsG0180001234.01.T01:exon | 35.0% |
!! | AGGTGCTTTGCTTTGTTTAT+GGG | - | Chr1:17931673-17931692 | None:intergenic | 35.0% |
!! | GAATTTTTGGGGAACATAAG+AGG | + | Chr1:17933088-17933107 | MsG0180001234.01.T01:CDS | 35.0% |
!!! | ACGAAGTAACTTTGTTTTGG+CGG | - | Chr1:17934629-17934648 | None:intergenic | 35.0% |
!!! | CCACCAACTTTTTTATCTTG+TGG | - | Chr1:17933586-17933605 | None:intergenic | 35.0% |
AAGAGAACTGAGTCAATGAG+AGG | + | Chr1:17934201-17934220 | MsG0180001234.01.T01:CDS | 40.0% | |
ACATAAGAGGCAAAGATTGG+AGG | + | Chr1:17933101-17933120 | MsG0180001234.01.T01:CDS | 40.0% | |
ACATAGACACTTCTCGGATT+AGG | + | Chr1:17932338-17932357 | MsG0180001234.01.T01:intron | 40.0% | |
ACCGTCTTATCTTCATCCAA+TGG | + | Chr1:17933940-17933959 | MsG0180001234.01.T01:intron | 40.0% | |
ACTCCAGCAGTATAATCAGA+AGG | - | Chr1:17932258-17932277 | None:intergenic | 40.0% | |
AGAGACGTATGAAACCTACT+TGG | - | Chr1:17933726-17933745 | None:intergenic | 40.0% | |
CATATGGGATGCATCTACTT+GGG | + | Chr1:17934260-17934279 | MsG0180001234.01.T01:CDS | 40.0% | |
CTCTTACTTGATGAGTCTTC+AGG | + | Chr1:17932078-17932097 | MsG0180001234.01.T01:CDS | 40.0% | |
CTTGGTGAAACAGAGTAACA+AGG | - | Chr1:17931967-17931986 | None:intergenic | 40.0% | |
GATCCCGTTACATTTGGTAA+TGG | + | Chr1:17934579-17934598 | MsG0180001234.01.T01:CDS | 40.0% | |
GGAACATAAGAGGCAAAGAT+TGG | + | Chr1:17933098-17933117 | MsG0180001234.01.T01:CDS | 40.0% | |
GGTGTATACCCTTCATCAAA+AGG | - | Chr1:17932006-17932025 | None:intergenic | 40.0% | |
GTTCTCTTTACTTCTCTGAC+AGG | - | Chr1:17934189-17934208 | None:intergenic | 40.0% | |
TGATTATACTGCTGGAGTTG+TGG | + | Chr1:17932260-17932279 | MsG0180001234.01.T01:CDS | 40.0% | |
TTCTCTGACTTTGTCCTACA+TGG | + | Chr1:17934339-17934358 | MsG0180001234.01.T01:CDS | 40.0% | |
! | GAAGGGTATACACCTTTGTT+TGG | + | Chr1:17932012-17932031 | MsG0180001234.01.T01:CDS | 40.0% |
! | GAGAGGAGATTTTCCATCAA+AGG | + | Chr1:17934218-17934237 | MsG0180001234.01.T01:CDS | 40.0% |
! | GTGTGATTTTGTCAAACTCG+CGG | - | Chr1:17932863-17932882 | None:intergenic | 40.0% |
! | TAGTGCAATTGATGGCACAT+TGG | - | Chr1:17932960-17932979 | None:intergenic | 40.0% |
!! | GGTGCTTTGCTTTGTTTATG+GGG | - | Chr1:17931672-17931691 | None:intergenic | 40.0% |
!! | TTTGTTCTGTTTTCAGGCTC+TGG | + | Chr1:17932177-17932196 | MsG0180001234.01.T01:intron | 40.0% |
AGAGAGTGACGAGTGAATGA+AGG | - | Chr1:17931693-17931712 | None:intergenic | 45.0% | |
ATCGTCTCAACTCTTACGAC+AGG | - | Chr1:17933755-17933774 | None:intergenic | 45.0% | |
CACTTGGTCACATGCTCAAT+AGG | - | Chr1:17934378-17934397 | None:intergenic | 45.0% | |
CAGATACAAAGTCCCTCTAC+CGG | + | Chr1:17934512-17934531 | MsG0180001234.01.T01:CDS | 45.0% | |
CAGCGACACCTTTGATCAAA+GGG | - | Chr1:17932556-17932575 | None:intergenic | 45.0% | |
CCAAGTAGATGCATCCCATA+TGG | - | Chr1:17934262-17934281 | None:intergenic | 45.0% | |
CCATATGGGATGCATCTACT+TGG | + | Chr1:17934259-17934278 | MsG0180001234.01.T01:CDS | 45.0% | |
CCGGCCATTACCAAATGTAA+CGG | - | Chr1:17934586-17934605 | None:intergenic | 45.0% | |
CGGCCATTACCAAATGTAAC+GGG | - | Chr1:17934585-17934604 | None:intergenic | 45.0% | |
GATCAACTGCACAACCATGT+AGG | - | Chr1:17934356-17934375 | None:intergenic | 45.0% | |
TAGACTATGAAGCAGAGCCA+TGG | - | Chr1:17932454-17932473 | None:intergenic | 45.0% | |
TCAACTCTTACGACAGGGTT+CGG | - | Chr1:17933749-17933768 | None:intergenic | 45.0% | |
TCGTCTCAACTCTTACGACA+GGG | - | Chr1:17933754-17933773 | None:intergenic | 45.0% | |
! | ACTTTGAGCACTGTCACACT+TGG | - | Chr1:17934394-17934413 | None:intergenic | 45.0% |
!! | AGTTGGTGGCTTATGACCAT+TGG | + | Chr1:17933597-17933616 | MsG0180001234.01.T01:intron | 45.0% |
!! | CCGTTACATTTGGTAATGGC+CGG | + | Chr1:17934583-17934602 | MsG0180001234.01.T01:CDS | 45.0% |
!!! | GGACTAGTCAGTGTCGTTTT+TGG | - | Chr1:17932496-17932515 | None:intergenic | 45.0% |
ACCTTTGATCAAAGGGTGGC+TGG | - | Chr1:17932549-17932568 | None:intergenic | 50.0% | |
CGACACCTTTGATCAAAGGG+TGG | - | Chr1:17932553-17932572 | None:intergenic | 50.0% | |
CGGTAGAGGGACTTTGTATC+TGG | - | Chr1:17934514-17934533 | None:intergenic | 50.0% | |
CTTGTGGGTTCCTCCCTTTA+AGG | - | Chr1:17933570-17933589 | None:intergenic | 50.0% | |
GCAGCGACACCTTTGATCAA+AGG | - | Chr1:17932557-17932576 | None:intergenic | 50.0% | |
GCATCTACTTGGGCTACCAA+TGG | + | Chr1:17934270-17934289 | MsG0180001234.01.T01:CDS | 50.0% | |
TCCAGCCACCCTTTGATCAA+AGG | + | Chr1:17932545-17932564 | MsG0180001234.01.T01:intron | 50.0% | |
TCTACTTGGGCTACCAATGG+AGG | + | Chr1:17934273-17934292 | MsG0180001234.01.T01:CDS | 50.0% | |
TTTGGCGGTGTCTCTTTCCA+CGG | - | Chr1:17934614-17934633 | None:intergenic | 50.0% | |
! | TCGATTCGCGACAAGCTGAA+AGG | + | Chr1:17934544-17934563 | MsG0180001234.01.T01:CDS | 50.0% |
CGATCACACACTCCGGTAGA+GGG | - | Chr1:17934527-17934546 | None:intergenic | 55.0% | |
CGCGAATCGATCACACACTC+CGG | - | Chr1:17934534-17934553 | None:intergenic | 55.0% | |
TCGATCACACACTCCGGTAG+AGG | - | Chr1:17934528-17934547 | None:intergenic | 55.0% | |
CGTGTCGCGTCTAGTGTCCA+TGG | + | Chr1:17932434-17932453 | MsG0180001234.01.T01:intron | 60.0% | |
GTCTCTTTCCACGGTGGTGC+CGG | - | Chr1:17934605-17934624 | None:intergenic | 60.0% | |
GGCGGTGTCTCTTTCCACGG+TGG | - | Chr1:17934611-17934630 | None:intergenic | 65.0% | |
! | GGTAATGGCCGGCACCACCG+TGG | + | Chr1:17934594-17934613 | MsG0180001234.01.T01:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 17931670 | 17935063 | 17931670 | ID=MsG0180001234.01;Name=MsG0180001234.01 |
Chr1 | mRNA | 17931670 | 17935063 | 17931670 | ID=MsG0180001234.01.T01;Parent=MsG0180001234.01;Name=MsG0180001234.01.T01;_AED=0.27;_eAED=0.27;_QI=291|1|1|1|1|1|4|410|311 |
Chr1 | exon | 17931670 | 17932099 | 17931670 | ID=MsG0180001234.01.T01:exon:32314;Parent=MsG0180001234.01.T01 |
Chr1 | exon | 17932193 | 17932293 | 17932193 | ID=MsG0180001234.01.T01:exon:32315;Parent=MsG0180001234.01.T01 |
Chr1 | exon | 17933040 | 17933248 | 17933040 | ID=MsG0180001234.01.T01:exon:32316;Parent=MsG0180001234.01.T01 |
Chr1 | exon | 17934167 | 17935063 | 17934167 | ID=MsG0180001234.01.T01:exon:32317;Parent=MsG0180001234.01.T01 |
Chr1 | five_prime_UTR | 17931670 | 17931960 | 17931670 | ID=MsG0180001234.01.T01:five_prime_utr;Parent=MsG0180001234.01.T01 |
Chr1 | CDS | 17931961 | 17932099 | 17931961 | ID=MsG0180001234.01.T01:cds;Parent=MsG0180001234.01.T01 |
Chr1 | CDS | 17932193 | 17932293 | 17932193 | ID=MsG0180001234.01.T01:cds;Parent=MsG0180001234.01.T01 |
Chr1 | CDS | 17933040 | 17933248 | 17933040 | ID=MsG0180001234.01.T01:cds;Parent=MsG0180001234.01.T01 |
Chr1 | CDS | 17934167 | 17934653 | 17934167 | ID=MsG0180001234.01.T01:cds;Parent=MsG0180001234.01.T01 |
Chr1 | three_prime_UTR | 17934654 | 17935063 | 17934654 | ID=MsG0180001234.01.T01:three_prime_utr;Parent=MsG0180001234.01.T01 |
Gene Sequence |
Protein sequence |