Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011403.01.T01 | XP_013465569.1 | 95.636 | 275 | 12 | 0 | 1 | 275 | 1 | 275 | 9.52E-168 | 475 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011403.01.T01 | A0A072VN82 | 95.636 | 275 | 12 | 0 | 1 | 275 | 1 | 275 | 4.55e-168 | 475 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048281.01 | MsG0280011403.01 | -0.815552 | 8.720074e-52 | 6.030901e-49 |
| MsG0080048978.01 | MsG0280011403.01 | -0.804557 | 2.040538e-49 | 1.055322e-46 |
| MsG0180000337.01 | MsG0280011403.01 | 0.829878 | 4.023299e-55 | 4.171349e-52 |
| MsG0180001234.01 | MsG0280011403.01 | 0.806418 | 8.307559e-50 | 4.506661e-47 |
| MsG0180002099.01 | MsG0280011403.01 | -0.811097 | 8.300183e-51 | 5.091971e-48 |
| MsG0180002214.01 | MsG0280011403.01 | -0.833715 | 4.549241e-56 | 5.282250e-53 |
| MsG0180002426.01 | MsG0280011403.01 | -0.823647 | 1.237759e-53 | 1.072121e-50 |
| MsG0180002546.01 | MsG0280011403.01 | -0.836141 | 1.113131e-56 | 1.390414e-53 |
| MsG0180003731.01 | MsG0280011403.01 | 0.816810 | 4.563419e-52 | 3.266636e-49 |
| MsG0180004752.01 | MsG0280011403.01 | 0.815867 | 7.420186e-52 | 5.176138e-49 |
| MsG0180004761.01 | MsG0280011403.01 | -0.828974 | 6.669554e-55 | 6.733004e-52 |
| MsG0180005817.01 | MsG0280011403.01 | -0.837502 | 5.004725e-57 | 6.514330e-54 |
| MsG0280010695.01 | MsG0280011403.01 | -0.835407 | 1.708086e-56 | 2.086878e-53 |
| MsG0280011299.01 | MsG0280011403.01 | -0.829520 | 4.916590e-55 | 5.044025e-52 |
| MsG0280011403.01 | MsG0380012281.01 | -0.803698 | 3.079606e-49 | 1.557928e-46 |
| MsG0280011403.01 | MsG0380013272.01 | 0.811723 | 6.071343e-51 | 3.786586e-48 |
| MsG0280011403.01 | MsG0380013378.01 | -0.824350 | 8.464418e-54 | 7.478166e-51 |
| MsG0280011403.01 | MsG0380013890.01 | -0.802830 | 4.656486e-49 | 2.304060e-46 |
| MsG0280011403.01 | MsG0380015971.01 | -0.813043 | 3.125477e-51 | 2.019242e-48 |
| MsG0280011403.01 | MsG0380017135.01 | -0.816532 | 5.267387e-52 | 3.741926e-49 |
| MsG0280011403.01 | MsG0380017405.01 | -0.802305 | 5.974535e-49 | 2.916926e-46 |
| MsG0280011403.01 | MsG0380017804.01 | -0.834064 | 3.718686e-56 | 4.363752e-53 |
| MsG0280011403.01 | MsG0380017904.01 | -0.828242 | 1.002175e-54 | 9.904505e-52 |
| MsG0280011403.01 | MsG0480018333.01 | 0.859758 | 3.313691e-63 | 8.848738e-60 |
| MsG0280011403.01 | MsG0480018390.01 | -0.830461 | 2.898477e-55 | 3.055509e-52 |
| MsG0280011403.01 | MsG0480018463.01 | -0.815805 | 7.659867e-52 | 5.334537e-49 |
| MsG0280011403.01 | MsG0480019017.01 | 0.809690 | 1.670594e-50 | 9.874706e-48 |
| MsG0280011403.01 | MsG0480019038.01 | 0.813898 | 2.027310e-51 | 1.340557e-48 |
| MsG0280011403.01 | MsG0480019836.01 | -0.842760 | 2.123288e-58 | 3.251629e-55 |
| MsG0280011403.01 | MsG0480019838.01 | -0.818172 | 2.251427e-52 | 1.672963e-49 |
| MsG0280011403.01 | MsG0480019975.01 | -0.822929 | 1.820970e-53 | 1.545598e-50 |
| MsG0280011403.01 | MsG0480020241.01 | 0.814964 | 1.178097e-51 | 8.017868e-49 |
| MsG0280011403.01 | MsG0480020958.01 | 0.827543 | 1.476418e-54 | 1.429653e-51 |
| MsG0280011403.01 | MsG0480021054.01 | -0.801694 | 7.979677e-49 | 3.835359e-46 |
| MsG0280011403.01 | MsG0480021553.01 | 0.820978 | 5.154528e-53 | 4.140605e-50 |
| MsG0280011403.01 | MsG0480022588.01 | 0.809654 | 1.700097e-50 | 1.003978e-47 |
| MsG0280011403.01 | MsG0480023480.01 | -0.827755 | 1.313079e-54 | 1.279318e-51 |
| MsG0280011403.01 | MsG0580024488.01 | 0.841560 | 4.412501e-58 | 6.508552e-55 |
| MsG0280011403.01 | MsG0580024570.01 | -0.809230 | 2.096930e-50 | 1.224406e-47 |
| MsG0280011403.01 | MsG0580028497.01 | 0.814456 | 1.526646e-51 | 1.024880e-48 |
| MsG0280011403.01 | MsG0580029583.01 | 0.868467 | 6.391968e-66 | 2.314480e-62 |
| MsG0280011403.01 | MsG0680030315.01 | 0.820828 | 5.582016e-53 | 4.464868e-50 |
| MsG0280011403.01 | MsG0680030545.01 | 0.810148 | 1.331125e-50 | 7.962863e-48 |
| MsG0280011403.01 | MsG0680030961.01 | 0.824082 | 9.788344e-54 | 8.582461e-51 |
| MsG0280011403.01 | MsG0680033623.01 | 0.822252 | 2.616815e-53 | 2.178668e-50 |
| MsG0280011403.01 | MsG0680035741.01 | 0.815447 | 9.199763e-52 | 6.344548e-49 |
| MsG0280011403.01 | MsG0680035841.01 | 0.801720 | 7.879784e-49 | 3.789929e-46 |
| MsG0280011403.01 | MsG0780038047.01 | -0.804114 | 2.523421e-49 | 1.290311e-46 |
| MsG0280011403.01 | MsG0780038857.01 | 0.800312 | 1.529165e-48 | 7.097727e-46 |
| MsG0280011403.01 | MsG0780038992.01 | 0.805935 | 1.049760e-49 | 5.625252e-47 |
| MsG0280011403.01 | MsG0780039702.01 | 0.813688 | 2.254609e-51 | 1.482403e-48 |
| MsG0280011403.01 | MsG0780041079.01 | 0.864709 | 1.000042e-64 | 3.170304e-61 |
| MsG0280011403.01 | MsG0780041173.01 | -0.840975 | 6.288117e-58 | 9.107427e-55 |
| MsG0280011403.01 | MsG0780041254.01 | -0.814662 | 1.374768e-51 | 9.280182e-49 |
| MsG0280011403.01 | MsG0780041637.01 | -0.819980 | 8.732808e-53 | 6.822924e-50 |
| MsG0280011403.01 | MsG0880041883.01 | 0.831169 | 1.944161e-55 | 2.092940e-52 |
| MsG0280011403.01 | MsG0880044339.01 | -0.813715 | 2.224489e-51 | 1.463699e-48 |
| MsG0280011403.01 | MsG0880044855.01 | 0.835468 | 1.649158e-56 | 2.018441e-53 |
| MsG0280011403.01 | MsG0880045188.01 | -0.805873 | 1.081693e-49 | 5.787226e-47 |
| MsG0280011403.01 | MsG0880045256.01 | 0.843479 | 1.366067e-58 | 2.140076e-55 |
| MsG0280011403.01 | MsG0880045683.01 | 0.853398 | 2.453297e-61 | 5.293890e-58 |
| MsG0280011403.01 | MsG0880046167.01 | -0.831299 | 1.806111e-55 | 1.951777e-52 |
| MsG0280011403.01 | MsG0880046251.01 | -0.800794 | 1.219201e-48 | 5.728342e-46 |
| MsG0280011403.01 | MsG0880046713.01 | 0.801048 | 1.081984e-48 | 5.116947e-46 |
| MsG0280011403.01 | MsG0880046947.01 | 0.810415 | 1.165898e-50 | 7.023355e-48 |
| MsG0280006853.01 | MsG0280011403.01 | 0.812887 | 3.380522e-51 | 2.174968e-48 |
| MsG0280007052.01 | MsG0280011403.01 | 0.853626 | 2.110761e-61 | 4.589377e-58 |
| MsG0280007427.01 | MsG0280011403.01 | 0.813768 | 2.165698e-51 | 1.426943e-48 |
| MsG0280008912.01 | MsG0280011403.01 | -0.806890 | 6.602481e-50 | 3.625501e-47 |
| MsG0280009971.01 | MsG0280011403.01 | 0.806465 | 8.120115e-50 | 4.410488e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011403.01.T01 | MTR_2g103795 | 95.636 | 275 | 12 | 0 | 1 | 275 | 1 | 275 | 1.15e-171 | 475 |
| MsG0280011403.01.T01 | MTR_2g103795 | 95.516 | 223 | 10 | 0 | 1 | 223 | 1 | 223 | 6.40e-131 | 370 |
| MsG0280011403.01.T01 | MTR_4g010250 | 51.362 | 257 | 106 | 4 | 1 | 255 | 1 | 240 | 1.30e-66 | 208 |
| MsG0280011403.01.T01 | MTR_4g114690 | 40.927 | 259 | 128 | 5 | 1 | 235 | 1 | 258 | 2.22e-51 | 170 |
| MsG0280011403.01.T01 | MTR_7g098450 | 49.180 | 122 | 59 | 1 | 121 | 242 | 211 | 329 | 4.08e-34 | 127 |
| MsG0280011403.01.T01 | MTR_7g098450 | 49.180 | 122 | 59 | 1 | 121 | 242 | 234 | 352 | 4.80e-34 | 127 |
| MsG0280011403.01.T01 | MTR_5g029910 | 52.941 | 102 | 48 | 0 | 136 | 237 | 119 | 220 | 5.87e-33 | 121 |
| MsG0280011403.01.T01 | MTR_7g099260 | 46.721 | 122 | 59 | 2 | 131 | 246 | 226 | 347 | 2.30e-30 | 117 |
| MsG0280011403.01.T01 | MTR_1g073230 | 38.255 | 149 | 86 | 2 | 101 | 249 | 96 | 238 | 1.88e-25 | 103 |
| MsG0280011403.01.T01 | MTR_1g073230 | 45.455 | 110 | 59 | 1 | 133 | 241 | 266 | 375 | 1.06e-21 | 93.6 |
| MsG0280011403.01.T01 | MTR_3g463450 | 40.816 | 98 | 58 | 0 | 139 | 236 | 399 | 496 | 4.51e-19 | 87.0 |
| MsG0280011403.01.T01 | MTR_5g082130 | 38.318 | 107 | 66 | 0 | 137 | 243 | 296 | 402 | 1.33e-16 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280011403.01.T01 | AT5G20190 | 62.626 | 99 | 37 | 0 | 139 | 237 | 156 | 254 | 2.19e-40 | 142 |
| MsG0280011403.01.T01 | AT1G80130 | 41.852 | 270 | 113 | 7 | 1 | 235 | 1 | 261 | 1.71e-39 | 140 |
| MsG0280011403.01.T01 | AT4G32340 | 59.000 | 100 | 40 | 1 | 139 | 237 | 110 | 209 | 6.34e-35 | 126 |
| MsG0280011403.01.T01 | AT4G17940 | 57.292 | 96 | 41 | 0 | 142 | 237 | 153 | 248 | 4.74e-34 | 125 |
| MsG0280011403.01.T01 | AT2G29670 | 40.650 | 123 | 71 | 1 | 131 | 253 | 412 | 532 | 4.23e-22 | 95.9 |
| MsG0280011403.01.T01 | AT2G29670 | 40.650 | 123 | 71 | 1 | 131 | 253 | 412 | 532 | 4.23e-22 | 95.9 |
| MsG0280011403.01.T01 | AT1G04530 | 47.368 | 95 | 49 | 1 | 142 | 236 | 124 | 217 | 4.00e-21 | 91.3 |
| MsG0280011403.01.T01 | AT1G04530 | 28.571 | 126 | 68 | 3 | 136 | 239 | 185 | 310 | 4.45e-11 | 62.8 |
| MsG0280011403.01.T01 | AT1G07280 | 41.346 | 104 | 61 | 0 | 138 | 241 | 434 | 537 | 1.33e-19 | 88.6 |
| MsG0280011403.01.T01 | AT1G07280 | 41.346 | 104 | 61 | 0 | 138 | 241 | 434 | 537 | 1.33e-19 | 88.6 |
| MsG0280011403.01.T01 | AT1G07280 | 41.346 | 104 | 61 | 0 | 138 | 241 | 434 | 537 | 1.33e-19 | 88.6 |
| MsG0280011403.01.T01 | AT3G47080 | 36.735 | 98 | 62 | 0 | 139 | 236 | 400 | 497 | 6.83e-14 | 71.6 |
Find 73 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGTAAAAGAGAATTATT+TGG | 0.185235 | 2:-83509909 | None:intergenic |
| CTTGGACTTGCAAGTGTTCT+AGG | 0.227205 | 2:-83509552 | None:intergenic |
| CTCTCTATGCTGATTTAATA+TGG | 0.230159 | 2:+83510470 | MsG0280011403.01.T01:CDS |
| TTTAACAGCCCTATCAAAAT+AGG | 0.241375 | 2:-83510524 | None:intergenic |
| TTGGAAATGTGTACTGATTA+TGG | 0.252546 | 2:+83511799 | MsG0280011403.01.T01:three_prime_UTR |
| GTATGTTGAAAGAGCCATTT+TGG | 0.262466 | 2:+83510420 | MsG0280011403.01.T01:CDS |
| GGTTTGCTTCAATCATGTTT+TGG | 0.294320 | 2:-83509887 | None:intergenic |
| AAGTAGGTTCGTGGAGATTA+TGG | 0.302005 | 2:+83510385 | MsG0280011403.01.T01:intron |
| ATCACTAGGGCTAGCCAAAA+TGG | 0.330932 | 2:-83510434 | None:intergenic |
| TAGTTTAGATAAGCAAGTTT+TGG | 0.332832 | 2:+83509683 | MsG0280011403.01.T01:CDS |
| AGTAATGGGTGGTGGTGGTA+TGG | 0.351405 | 2:+83509749 | MsG0280011403.01.T01:CDS |
| AATGGTAGTGGAAGAGATTC+TGG | 0.357707 | 2:+83509804 | MsG0280011403.01.T01:CDS |
| GATTTCTCTTACCAATCATC+TGG | 0.360855 | 2:-83510553 | None:intergenic |
| TTCTTTCCTTCCACACTCAA+TGG | 0.370876 | 2:+83509494 | MsG0280011403.01.T01:CDS |
| GTAATGGGTGGTGGTGGTAT+GGG | 0.372856 | 2:+83509750 | MsG0280011403.01.T01:CDS |
| CAAGTAAAAGAGAATTATTT+GGG | 0.377661 | 2:-83509908 | None:intergenic |
| TGGTGATTGAGTTCTTGTTC+AGG | 0.381932 | 2:-83509525 | None:intergenic |
| CTTCATATGCAAAATTCCTA+TGG | 0.391469 | 2:+83511557 | MsG0280011403.01.T01:CDS |
| GAAAATAGTTCTCTCGTTGA+AGG | 0.392335 | 2:-83509654 | None:intergenic |
| GGTGGTATGGGGTGTGATGG+TGG | 0.402385 | 2:+83509762 | MsG0280011403.01.T01:CDS |
| GGTGGTGGTATGGGGTGTGA+TGG | 0.405771 | 2:+83509759 | MsG0280011403.01.T01:CDS |
| AAGTTGCAAACTTTAGTAAT+GGG | 0.406381 | 2:+83509735 | MsG0280011403.01.T01:CDS |
| AGAGATTCTGGTGGTGGAAA+TGG | 0.409069 | 2:+83509816 | MsG0280011403.01.T01:CDS |
| ATATGATGCTAAGATTTAAA+TGG | 0.417706 | 2:-83509401 | None:intergenic |
| CTGCTTCTTCTGAGTGAAGT+TGG | 0.425936 | 2:+83511708 | MsG0280011403.01.T01:three_prime_UTR |
| CACATTTCCAAAAGATGAAA+AGG | 0.432767 | 2:-83511787 | None:intergenic |
| TGTGATGGTGGAAGTATTTG+TGG | 0.443120 | 2:+83509774 | MsG0280011403.01.T01:CDS |
| AAAGTTGCAAACTTTAGTAA+TGG | 0.445266 | 2:+83509734 | MsG0280011403.01.T01:CDS |
| AGTATTTGTGGTGGTTGTAA+TGG | 0.447043 | 2:+83509786 | MsG0280011403.01.T01:CDS |
| TCTGGTGGTGGAAATGGAAA+TGG | 0.452290 | 2:+83509822 | MsG0280011403.01.T01:CDS |
| AAAGATCAGGTGAAAGTGTA+TGG | 0.469919 | 2:-83511630 | None:intergenic |
| GGTGATTGAGTTCTTGTTCA+GGG | 0.477042 | 2:-83509524 | None:intergenic |
| GTTTAAAGAAACGGTAGCTA+TGG | 0.493016 | 2:-83509369 | None:intergenic |
| TAATGGGTGGTGGTGGTATG+GGG | 0.499472 | 2:+83509751 | MsG0280011403.01.T01:CDS |
| AAAACGAGAGTGATATAGAG+AGG | 0.515582 | 2:-83509304 | None:intergenic |
| TGTGGTGGTTGTAATGGTAG+TGG | 0.516522 | 2:+83509792 | MsG0280011403.01.T01:CDS |
| TTAAAAGTGATCCAGATGAT+TGG | 0.517931 | 2:+83510542 | MsG0280011403.01.T01:CDS |
| TTATCACATCAGCTATGTCC+TGG | 0.518059 | 2:+83511534 | MsG0280011403.01.T01:intron |
| GCTAAGATTTAAATGGTGGT+TGG | 0.521024 | 2:-83509394 | None:intergenic |
| CAATTTGAAAAGTAGGTTCG+TGG | 0.525753 | 2:+83510376 | MsG0280011403.01.T01:intron |
| CATCTTCTTCAGCGTCCCAT+AGG | 0.538742 | 2:-83511573 | None:intergenic |
| GGAAGGAAAGAACTTGGAAT+TGG | 0.544342 | 2:-83509483 | None:intergenic |
| ACTTTAGTAATGGGTGGTGG+TGG | 0.545271 | 2:+83509744 | MsG0280011403.01.T01:CDS |
| AGTGGAAGAGATTCTGGTGG+TGG | 0.546901 | 2:+83509810 | MsG0280011403.01.T01:CDS |
| GATAAAGCATCAGCATCACT+AGG | 0.552225 | 2:-83510448 | None:intergenic |
| TGGTTGGAAGTTTAAAGAAA+CGG | 0.554878 | 2:-83509378 | None:intergenic |
| AAGATTCCATTGAGTGTGGA+AGG | 0.563863 | 2:-83509500 | None:intergenic |
| TTCATATGCAAAATTCCTAT+GGG | 0.567504 | 2:+83511558 | MsG0280011403.01.T01:CDS |
| GTGATTGAGTTCTTGTTCAG+GGG | 0.572118 | 2:-83509523 | None:intergenic |
| AAACGAGAGTGATATAGAGA+GGG | 0.575871 | 2:-83509303 | None:intergenic |
| GAGTGTGGAAGGAAAGAACT+TGG | 0.576678 | 2:-83509489 | None:intergenic |
| TACAACAGTGGAATTCTCAC+TGG | 0.576717 | 2:-83511904 | None:intergenic |
| GACTTGCAAGTGTTCTAGGA+AGG | 0.580355 | 2:-83509548 | None:intergenic |
| GGGGAAGATTCCATTGAGTG+TGG | 0.597244 | 2:-83509504 | None:intergenic |
| CAAACTTTAGTAATGGGTGG+TGG | 0.599262 | 2:+83509741 | MsG0280011403.01.T01:CDS |
| AATGGATGGGAAAATAATGA+TGG | 0.600399 | 2:+83509840 | MsG0280011403.01.T01:CDS |
| TTGCAAACTTTAGTAATGGG+TGG | 0.605342 | 2:+83509738 | MsG0280011403.01.T01:CDS |
| GTGAAAAGTGTAAAGTGTTG+AGG | 0.607037 | 2:-83509345 | None:intergenic |
| TGGTGGAAATGGAAATGGAT+GGG | 0.611749 | 2:+83509827 | MsG0280011403.01.T01:CDS |
| AAAGTGTAAAGTGTTGAGGT+AGG | 0.616764 | 2:-83509341 | None:intergenic |
| GATTATGGATGATTTAGTAG+AGG | 0.621370 | 2:+83511814 | MsG0280011403.01.T01:three_prime_UTR |
| TGGTGATGATTCTTAAGAAG+TGG | 0.624905 | 2:-83509591 | None:intergenic |
| TGATGCTAAGATTTAAATGG+TGG | 0.625084 | 2:-83509398 | None:intergenic |
| ATAAAGCATCAGCATCACTA+GGG | 0.631318 | 2:-83510447 | None:intergenic |
| TTGCAAGTGTTCTAGGAAGG+TGG | 0.634929 | 2:-83509545 | None:intergenic |
| ATTTCTCAATGTCTCAACAA+AGG | 0.639260 | 2:+83509252 | MsG0280011403.01.T01:five_prime_UTR |
| CTTCACTCAGAAGAAGCAGA+GGG | 0.642007 | 2:-83511704 | None:intergenic |
| GTGGTGGAAATGGAAATGGA+TGG | 0.643918 | 2:+83509826 | MsG0280011403.01.T01:CDS |
| GATGGTGGAAGTATTTGTGG+TGG | 0.659019 | 2:+83509777 | MsG0280011403.01.T01:CDS |
| ACTTCACTCAGAAGAAGCAG+AGG | 0.664659 | 2:-83511705 | None:intergenic |
| TGGAGATTATGGTAAAGCAG+AGG | 0.689369 | 2:+83510396 | MsG0280011403.01.T01:CDS |
| TTCACTCAGAAGAAGCAGAG+GGG | 0.734726 | 2:-83511703 | None:intergenic |
| GGTAGTGGAAGAGATTCTGG+TGG | 0.752433 | 2:+83509807 | MsG0280011403.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACACAAATAAAATTATTT+AGG | - | Chr2:83511017-83511036 | None:intergenic | 10.0% |
| !! | AATTTCATCATAATATTAAT+TGG | - | Chr2:83511108-83511127 | None:intergenic | 10.0% |
| !!! | TGAAAATATATGAATTTTTT+TGG | + | Chr2:83511932-83511951 | MsG0280011403.01.T01:three_prime_UTR | 10.0% |
| !! | AAAAAAAATCCTACAAAAAT+CGG | + | Chr2:83511152-83511171 | MsG0280011403.01.T01:intron | 15.0% |
| !! | AAAATATCAAACTTGAAATT+TGG | + | Chr2:83510109-83510128 | MsG0280011403.01.T01:intron | 15.0% |
| !! | AATTAGATTATCTATCATTT+GGG | + | Chr2:83511274-83511293 | MsG0280011403.01.T01:intron | 15.0% |
| !! | ACAATATATAAATGAAGATT+AGG | + | Chr2:83510242-83510261 | MsG0280011403.01.T01:intron | 15.0% |
| !! | ATGATGAAATTAATTAACAA+GGG | + | Chr2:83511117-83511136 | MsG0280011403.01.T01:intron | 15.0% |
| !! | TAATTAATTAGTTGTTAGAT+TGG | - | Chr2:83511368-83511387 | None:intergenic | 15.0% |
| !! | TAATTAGATTATCTATCATT+TGG | + | Chr2:83511273-83511292 | MsG0280011403.01.T01:intron | 15.0% |
| !! | TATAACATCAAATAAAAATC+AGG | - | Chr2:83511485-83511504 | None:intergenic | 15.0% |
| !! | TATGATGAAATTAATTAACA+AGG | + | Chr2:83511116-83511135 | MsG0280011403.01.T01:intron | 15.0% |
| !! | TGTATTGTGATTAAAATATA+TGG | + | Chr2:83510329-83510348 | MsG0280011403.01.T01:intron | 15.0% |
| !!! | TAGGTAAAATATTTTGTAAT+TGG | + | Chr2:83510266-83510285 | MsG0280011403.01.T01:intron | 15.0% |
| !! | AAAAAAATCCTACAAAAATC+GGG | + | Chr2:83511153-83511172 | MsG0280011403.01.T01:intron | 20.0% |
| !! | ATAAACATGAGAAATACTTA+GGG | + | Chr2:83510859-83510878 | MsG0280011403.01.T01:intron | 20.0% |
| !! | ATAAAGTTCATAGATGAATT+AGG | - | Chr2:83510623-83510642 | None:intergenic | 20.0% |
| !! | ATATGATGCTAAGATTTAAA+TGG | - | Chr2:83509404-83509423 | None:intergenic | 20.0% |
| !! | CAAGTAAAAGAGAATTATTT+GGG | - | Chr2:83509911-83509930 | None:intergenic | 20.0% |
| !! | TAATGTTCAATTTGAAAAGT+AGG | + | Chr2:83510369-83510388 | MsG0280011403.01.T01:intron | 20.0% |
| !! | TTAAGTTATGTGTTGAAATA+TGG | - | Chr2:83510077-83510096 | None:intergenic | 20.0% |
| !! | TTCTTTCCAAAAAAATACAA+GGG | + | Chr2:83511448-83511467 | MsG0280011403.01.T01:intron | 20.0% |
| !! | TTTCTTTCCAAAAAAATACA+AGG | + | Chr2:83511447-83511466 | MsG0280011403.01.T01:intron | 20.0% |
| !!! | TTTATTTGTGTTTCTAGTTA+AGG | + | Chr2:83511024-83511043 | MsG0280011403.01.T01:intron | 20.0% |
| ! | AAACACAAATGTAAAAGGTT+TGG | + | Chr2:83510884-83510903 | MsG0280011403.01.T01:intron | 25.0% |
| ! | AAAGTTGCAAACTTTAGTAA+TGG | + | Chr2:83509734-83509753 | MsG0280011403.01.T01:CDS | 25.0% |
| ! | AAAGTTTAAGTCTAATTCGT+CGG | + | Chr2:83510204-83510223 | MsG0280011403.01.T01:intron | 25.0% |
| ! | AAGTATTTCTCATGTTTATG+CGG | - | Chr2:83510858-83510877 | None:intergenic | 25.0% |
| ! | AAGTTGCAAACTTTAGTAAT+GGG | + | Chr2:83509735-83509754 | MsG0280011403.01.T01:CDS | 25.0% |
| ! | AGAACAAGATATGTTACAAA+AGG | - | Chr2:83510835-83510854 | None:intergenic | 25.0% |
| ! | AGAGAAATCTTAAATCTATG+TGG | + | Chr2:83510567-83510586 | MsG0280011403.01.T01:intron | 25.0% |
| ! | ATATAAACCAAATGATACAG+TGG | + | Chr2:83510750-83510769 | MsG0280011403.01.T01:intron | 25.0% |
| ! | ATATAAATGAAGATTAGGCT+AGG | + | Chr2:83510247-83510266 | MsG0280011403.01.T01:intron | 25.0% |
| ! | ATGTGCAAATTTGTATATGT+AGG | - | Chr2:83511074-83511093 | None:intergenic | 25.0% |
| ! | CATAAACATGAGAAATACTT+AGG | + | Chr2:83510858-83510877 | MsG0280011403.01.T01:intron | 25.0% |
| ! | CCAAGTAAAAGAGAATTATT+TGG | - | Chr2:83509912-83509931 | None:intergenic | 25.0% |
| ! | TGTGCAAATTTGTATATGTA+GGG | - | Chr2:83511073-83511092 | None:intergenic | 25.0% |
| ! | TTCATATGCAAAATTCCTAT+GGG | + | Chr2:83511558-83511577 | MsG0280011403.01.T01:CDS | 25.0% |
| !! | ACGAATTAGACTTAAACTTT+TGG | - | Chr2:83510204-83510223 | None:intergenic | 25.0% |
| !! | ATTTTCAAAAGATACAACAG+TGG | - | Chr2:83511919-83511938 | None:intergenic | 25.0% |
| !! | CCAAATAATTCTCTTTTACT+TGG | + | Chr2:83509909-83509928 | MsG0280011403.01.T01:CDS | 25.0% |
| !! | TAGTTTAGATAAGCAAGTTT+TGG | + | Chr2:83509683-83509702 | MsG0280011403.01.T01:CDS | 25.0% |
| !!! | AACAAACCCTTGTATTTTTT+TGG | - | Chr2:83511457-83511476 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTCTGTTTCTTCT+TGG | - | Chr2:83509614-83509633 | None:intergenic | 25.0% |
| !!! | TTATGCTAAGTTTTTGAAAG+AGG | + | Chr2:83509935-83509954 | MsG0280011403.01.T01:CDS | 25.0% |
| AATGGATGGGAAAATAATGA+TGG | + | Chr2:83509840-83509859 | MsG0280011403.01.T01:CDS | 30.0% | |
| AATTAACAAGGGAACAACAA+GGG | + | Chr2:83511128-83511147 | MsG0280011403.01.T01:intron | 30.0% | |
| AGCTCAACTAATTTACGATA+GGG | + | Chr2:83511304-83511323 | MsG0280011403.01.T01:intron | 30.0% | |
| ATTTCTCAATGTCTCAACAA+AGG | + | Chr2:83509252-83509271 | MsG0280011403.01.T01:five_prime_UTR | 30.0% | |
| CACATTTCCAAAAGATGAAA+AGG | - | Chr2:83511790-83511809 | None:intergenic | 30.0% | |
| CTTCATATGCAAAATTCCTA+TGG | + | Chr2:83511557-83511576 | MsG0280011403.01.T01:CDS | 30.0% | |
| GATTATGGATGATTTAGTAG+AGG | + | Chr2:83511814-83511833 | MsG0280011403.01.T01:three_prime_UTR | 30.0% | |
| GGGATAAACACAAATGTAAA+AGG | + | Chr2:83510879-83510898 | MsG0280011403.01.T01:intron | 30.0% | |
| TAATTAACAAGGGAACAACA+AGG | + | Chr2:83511127-83511146 | MsG0280011403.01.T01:intron | 30.0% | |
| TAGCTCAACTAATTTACGAT+AGG | + | Chr2:83511303-83511322 | MsG0280011403.01.T01:intron | 30.0% | |
| TGATGCTAAGATTTAAATGG+TGG | - | Chr2:83509401-83509420 | None:intergenic | 30.0% | |
| TGGTTGGAAGTTTAAAGAAA+CGG | - | Chr2:83509381-83509400 | None:intergenic | 30.0% | |
| TTAAAAGTGATCCAGATGAT+TGG | + | Chr2:83510542-83510561 | MsG0280011403.01.T01:CDS | 30.0% | |
| TTAGGAGAATGTATACATAG+AGG | - | Chr2:83510605-83510624 | None:intergenic | 30.0% | |
| TTTAACAGCCCTATCAAAAT+AGG | - | Chr2:83510527-83510546 | None:intergenic | 30.0% | |
| ! | GATTATCTATCATTTGGGAT+TGG | + | Chr2:83511279-83511298 | MsG0280011403.01.T01:intron | 30.0% |
| ! | TATATAGACCCGATTTTTGT+AGG | - | Chr2:83511164-83511183 | None:intergenic | 30.0% |
| !! | CTCTCTATGCTGATTTAATA+TGG | + | Chr2:83510470-83510489 | MsG0280011403.01.T01:CDS | 30.0% |
| !! | TTGGAAATGTGTACTGATTA+TGG | + | Chr2:83511799-83511818 | MsG0280011403.01.T01:three_prime_UTR | 30.0% |
| !!! | AGACGTTTTGCTTTATTTTC+TGG | + | Chr2:83511416-83511435 | MsG0280011403.01.T01:intron | 30.0% |
| AAAACGAGAGTGATATAGAG+AGG | - | Chr2:83509307-83509326 | None:intergenic | 35.0% | |
| AAACGAGAGTGATATAGAGA+GGG | - | Chr2:83509306-83509325 | None:intergenic | 35.0% | |
| AGTATTTGTGGTGGTTGTAA+TGG | + | Chr2:83509786-83509805 | MsG0280011403.01.T01:CDS | 35.0% | |
| ATAACATGATCAAGCTCAAG+TGG | - | Chr2:83509996-83510015 | None:intergenic | 35.0% | |
| CAATTTGAAAAGTAGGTTCG+TGG | + | Chr2:83510376-83510395 | MsG0280011403.01.T01:intron | 35.0% | |
| GAAAATAGTTCTCTCGTTGA+AGG | - | Chr2:83509657-83509676 | None:intergenic | 35.0% | |
| GAAGAAGGTGGTAAAAAAGT+AGG | + | Chr2:83509711-83509730 | MsG0280011403.01.T01:CDS | 35.0% | |
| GATTTCTCTTACCAATCATC+TGG | - | Chr2:83510556-83510575 | None:intergenic | 35.0% | |
| GCTAAGATTTAAATGGTGGT+TGG | - | Chr2:83509397-83509416 | None:intergenic | 35.0% | |
| GTTTAAAGAAACGGTAGCTA+TGG | - | Chr2:83509372-83509391 | None:intergenic | 35.0% | |
| TACGATAGGGTCAAAAAAGT+TGG | + | Chr2:83511317-83511336 | MsG0280011403.01.T01:intron | 35.0% | |
| TAGAGACACTATATGTGACA+TGG | + | Chr2:83510659-83510678 | MsG0280011403.01.T01:intron | 35.0% | |
| TCTTGATCCACTGTATCATT+TGG | - | Chr2:83510760-83510779 | None:intergenic | 35.0% | |
| TTAGCTCCTAGAAAAAGATC+AGG | - | Chr2:83511646-83511665 | None:intergenic | 35.0% | |
| ! | AAAGATCAGGTGAAAGTGTA+TGG | - | Chr2:83511633-83511652 | None:intergenic | 35.0% |
| ! | ATAAAGCATCAGCATCACTA+GGG | - | Chr2:83510450-83510469 | None:intergenic | 35.0% |
| ! | CTTTCACCTGATCTTTTTCT+AGG | + | Chr2:83511637-83511656 | MsG0280011403.01.T01:CDS | 35.0% |
| ! | GTATGTTGAAAGAGCCATTT+TGG | + | Chr2:83510420-83510439 | MsG0280011403.01.T01:CDS | 35.0% |
| ! | TGCATGTCCTTTTCATCTTT+TGG | + | Chr2:83511780-83511799 | MsG0280011403.01.T01:three_prime_UTR | 35.0% |
| ! | TGGTGATGATTCTTAAGAAG+TGG | - | Chr2:83509594-83509613 | None:intergenic | 35.0% |
| ! | TTGCAAACTTTAGTAATGGG+TGG | + | Chr2:83509738-83509757 | MsG0280011403.01.T01:CDS | 35.0% |
| !! | AAAGTGTAAAGTGTTGAGGT+AGG | - | Chr2:83509344-83509363 | None:intergenic | 35.0% |
| !! | GATCTTTTTCTAGGAGCTAA+TGG | + | Chr2:83511646-83511665 | MsG0280011403.01.T01:CDS | 35.0% |
| !! | GGCTCTTATCAGTTTTATGT+TGG | - | Chr2:83511612-83511631 | None:intergenic | 35.0% |
| !! | GGTTTGCTTCAATCATGTTT+TGG | - | Chr2:83509890-83509909 | None:intergenic | 35.0% |
| !! | GTGAAAAGTGTAAAGTGTTG+AGG | - | Chr2:83509348-83509367 | None:intergenic | 35.0% |
| !!! | AGCTGAAGCCTATTTTGATA+GGG | + | Chr2:83510516-83510535 | MsG0280011403.01.T01:CDS | 35.0% |
| !!! | CAAGTTTTGGATCATGAAGA+AGG | + | Chr2:83509696-83509715 | MsG0280011403.01.T01:CDS | 35.0% |
| !!! | CCTGATAGTTGGTCTTTTAA+GGG | - | Chr2:83511214-83511233 | None:intergenic | 35.0% |
| !!! | GGTGCAGATTTTTTATGTCT+TGG | - | Chr2:83509573-83509592 | None:intergenic | 35.0% |
| !!! | TCCTGATAGTTGGTCTTTTA+AGG | - | Chr2:83511215-83511234 | None:intergenic | 35.0% |
| AAGATTCCATTGAGTGTGGA+AGG | - | Chr2:83509503-83509522 | None:intergenic | 40.0% | |
| AAGTAGGTTCGTGGAGATTA+TGG | + | Chr2:83510385-83510404 | MsG0280011403.01.T01:intron | 40.0% | |
| AGACCAACTATCAGGAACAA+AGG | + | Chr2:83511219-83511238 | MsG0280011403.01.T01:intron | 40.0% | |
| CCCTTAAAAGACCAACTATC+AGG | + | Chr2:83511211-83511230 | MsG0280011403.01.T01:intron | 40.0% | |
| CTTCCTTTGTTCCTGATAGT+TGG | - | Chr2:83511225-83511244 | None:intergenic | 40.0% | |
| GAATTCAGATTGCATGCAGT+CGG | - | Chr2:83510169-83510188 | None:intergenic | 40.0% | |
| GATAGGGTCAAAAAAGTTGG+AGG | + | Chr2:83511320-83511339 | MsG0280011403.01.T01:intron | 40.0% | |
| GGAAGGAAAGAACTTGGAAT+TGG | - | Chr2:83509486-83509505 | None:intergenic | 40.0% | |
| GGTGATTGAGTTCTTGTTCA+GGG | - | Chr2:83509527-83509546 | None:intergenic | 40.0% | |
| GTGATTGAGTTCTTGTTCAG+GGG | - | Chr2:83509526-83509545 | None:intergenic | 40.0% | |
| TACAACAGTGGAATTCTCAC+TGG | - | Chr2:83511907-83511926 | None:intergenic | 40.0% | |
| TGGAGATTATGGTAAAGCAG+AGG | + | Chr2:83510396-83510415 | MsG0280011403.01.T01:CDS | 40.0% | |
| TGGTGATTGAGTTCTTGTTC+AGG | - | Chr2:83509528-83509547 | None:intergenic | 40.0% | |
| TGGTGGAAATGGAAATGGAT+GGG | + | Chr2:83509827-83509846 | MsG0280011403.01.T01:CDS | 40.0% | |
| TTATCACATCAGCTATGTCC+TGG | + | Chr2:83511534-83511553 | MsG0280011403.01.T01:intron | 40.0% | |
| TTCTTTCCTTCCACACTCAA+TGG | + | Chr2:83509494-83509513 | MsG0280011403.01.T01:CDS | 40.0% | |
| ! | GATAAAGCATCAGCATCACT+AGG | - | Chr2:83510451-83510470 | None:intergenic | 40.0% |
| ! | GGAATTTTGCATATGAAGCC+AGG | - | Chr2:83511555-83511574 | None:intergenic | 40.0% |
| ! | GTCGGTACATTGATGATTGT+TGG | - | Chr2:83510151-83510170 | None:intergenic | 40.0% |
| !! | AATGGTAGTGGAAGAGATTC+TGG | + | Chr2:83509804-83509823 | MsG0280011403.01.T01:CDS | 40.0% |
| !! | CAAACTTTAGTAATGGGTGG+TGG | + | Chr2:83509741-83509760 | MsG0280011403.01.T01:CDS | 40.0% |
| !! | GTTTTGGATCATGAAGAAGG+TGG | + | Chr2:83509699-83509718 | MsG0280011403.01.T01:CDS | 40.0% |
| !! | TGTGATGGTGGAAGTATTTG+TGG | + | Chr2:83509774-83509793 | MsG0280011403.01.T01:CDS | 40.0% |
| !!! | GAGCTGAAGCCTATTTTGAT+AGG | + | Chr2:83510515-83510534 | MsG0280011403.01.T01:CDS | 40.0% |
| !!! | GATAGTTGGTCTTTTAAGGG+TGG | - | Chr2:83511211-83511230 | None:intergenic | 40.0% |
| ACTTCACTCAGAAGAAGCAG+AGG | - | Chr2:83511708-83511727 | None:intergenic | 45.0% | |
| ATGTGCTAACTGCGTGAATG+CGG | - | Chr2:83510026-83510045 | None:intergenic | 45.0% | |
| CAGTGGTTGTTGATCGAGAT+AGG | + | Chr2:83510046-83510065 | MsG0280011403.01.T01:intron | 45.0% | |
| CTGCTTCTTCTGAGTGAAGT+TGG | + | Chr2:83511708-83511727 | MsG0280011403.01.T01:three_prime_UTR | 45.0% | |
| CTTCACTCAGAAGAAGCAGA+GGG | - | Chr2:83511707-83511726 | None:intergenic | 45.0% | |
| CTTGGACTTGCAAGTGTTCT+AGG | - | Chr2:83509555-83509574 | None:intergenic | 45.0% | |
| GAGTGTGGAAGGAAAGAACT+TGG | - | Chr2:83509492-83509511 | None:intergenic | 45.0% | |
| TGTGGTGGTTGTAATGGTAG+TGG | + | Chr2:83509792-83509811 | MsG0280011403.01.T01:CDS | 45.0% | |
| TTCACTCAGAAGAAGCAGAG+GGG | - | Chr2:83511706-83511725 | None:intergenic | 45.0% | |
| ! | AGTTGTTAGATTGGTCCGCA+GGG | - | Chr2:83511359-83511378 | None:intergenic | 45.0% |
| ! | GCAGAGGGGTTAGATTTTAG+AGG | - | Chr2:83511692-83511711 | None:intergenic | 45.0% |
| ! | GTGGTGGAAATGGAAATGGA+TGG | + | Chr2:83509826-83509845 | MsG0280011403.01.T01:CDS | 45.0% |
| ! | TAGTTGTTAGATTGGTCCGC+AGG | - | Chr2:83511360-83511379 | None:intergenic | 45.0% |
| !! | ACTTTAGTAATGGGTGGTGG+TGG | + | Chr2:83509744-83509763 | MsG0280011403.01.T01:CDS | 45.0% |
| !! | AGAGATTCTGGTGGTGGAAA+TGG | + | Chr2:83509816-83509835 | MsG0280011403.01.T01:CDS | 45.0% |
| !! | ATCACTAGGGCTAGCCAAAA+TGG | - | Chr2:83510437-83510456 | None:intergenic | 45.0% |
| !! | GACTTGCAAGTGTTCTAGGA+AGG | - | Chr2:83509551-83509570 | None:intergenic | 45.0% |
| !! | GATGGTGGAAGTATTTGTGG+TGG | + | Chr2:83509777-83509796 | MsG0280011403.01.T01:CDS | 45.0% |
| !! | TCTGGTGGTGGAAATGGAAA+TGG | + | Chr2:83509822-83509841 | MsG0280011403.01.T01:CDS | 45.0% |
| !! | TTGCAAGTGTTCTAGGAAGG+TGG | - | Chr2:83509548-83509567 | None:intergenic | 45.0% |
| !!! | TTTTTATTTTTAAGATAAAT+TGG | + | Chr2:83510925-83510944 | MsG0280011403.01.T01:intron | 5.0% |
| AGTGGAAGAGATTCTGGTGG+TGG | + | Chr2:83509810-83509829 | MsG0280011403.01.T01:CDS | 50.0% | |
| CATCTTCTTCAGCGTCCCAT+AGG | - | Chr2:83511576-83511595 | None:intergenic | 50.0% | |
| GGGGAAGATTCCATTGAGTG+TGG | - | Chr2:83509507-83509526 | None:intergenic | 50.0% | |
| TCACGCAGTTAGCACATCAG+TGG | + | Chr2:83510029-83510048 | MsG0280011403.01.T01:intron | 50.0% | |
| TGGTCCGCAGGGTTTGAATT+CGG | - | Chr2:83511348-83511367 | None:intergenic | 50.0% | |
| TGTGCTAACTGCGTGAATGC+GGG | - | Chr2:83510025-83510044 | None:intergenic | 50.0% | |
| !! | AGTAATGGGTGGTGGTGGTA+TGG | + | Chr2:83509749-83509768 | MsG0280011403.01.T01:CDS | 50.0% |
| !! | GGTAGTGGAAGAGATTCTGG+TGG | + | Chr2:83509807-83509826 | MsG0280011403.01.T01:CDS | 50.0% |
| !! | GTAATGGGTGGTGGTGGTAT+GGG | + | Chr2:83509750-83509769 | MsG0280011403.01.T01:CDS | 50.0% |
| !! | TAATGGGTGGTGGTGGTATG+GGG | + | Chr2:83509751-83509770 | MsG0280011403.01.T01:CDS | 50.0% |
| GGACCCGAATTCAAACCCTG+CGG | + | Chr2:83511341-83511360 | MsG0280011403.01.T01:intron | 55.0% | |
| GGTCCGCAGGGTTTGAATTC+GGG | - | Chr2:83511347-83511366 | None:intergenic | 55.0% | |
| GTGCTAACTGCGTGAATGCG+GGG | - | Chr2:83510024-83510043 | None:intergenic | 55.0% | |
| GGTGGTATGGGGTGTGATGG+TGG | + | Chr2:83509762-83509781 | MsG0280011403.01.T01:CDS | 60.0% | |
| ! | GGTGGTGGTATGGGGTGTGA+TGG | + | Chr2:83509759-83509778 | MsG0280011403.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 83509221 | 83511955 | 83509221 | ID=MsG0280011403.01;Name=MsG0280011403.01 |
| Chr2 | mRNA | 83509221 | 83511955 | 83509221 | ID=MsG0280011403.01.T01;Parent=MsG0280011403.01;Name=MsG0280011403.01.T01;_AED=0.27;_eAED=0.27;_QI=238|1|1|1|1|1|3|253|275 |
| Chr2 | exon | 83509221 | 83509956 | 83509221 | ID=MsG0280011403.01.T01:exon:12752;Parent=MsG0280011403.01.T01 |
| Chr2 | exon | 83510391 | 83510563 | 83510391 | ID=MsG0280011403.01.T01:exon:12753;Parent=MsG0280011403.01.T01 |
| Chr2 | exon | 83511546 | 83511955 | 83511546 | ID=MsG0280011403.01.T01:exon:12754;Parent=MsG0280011403.01.T01 |
| Chr2 | five_prime_UTR | 83509221 | 83509458 | 83509221 | ID=MsG0280011403.01.T01:five_prime_utr;Parent=MsG0280011403.01.T01 |
| Chr2 | CDS | 83509459 | 83509956 | 83509459 | ID=MsG0280011403.01.T01:cds;Parent=MsG0280011403.01.T01 |
| Chr2 | CDS | 83510391 | 83510563 | 83510391 | ID=MsG0280011403.01.T01:cds;Parent=MsG0280011403.01.T01 |
| Chr2 | CDS | 83511546 | 83511702 | 83511546 | ID=MsG0280011403.01.T01:cds;Parent=MsG0280011403.01.T01 |
| Chr2 | three_prime_UTR | 83511703 | 83511955 | 83511703 | ID=MsG0280011403.01.T01:three_prime_utr;Parent=MsG0280011403.01.T01 |
| Gene Sequence |
| Protein sequence |
