Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043948.01.T01 | XP_003628200.1 | 91.667 | 156 | 13 | 0 | 37 | 192 | 1 | 156 | 7.57E-101 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043948.01.T01 | Q9SSK5 | 36.913 | 149 | 91 | 3 | 39 | 185 | 7 | 154 | 2.23E-23 | 94 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043948.01.T01 | G7L7T5 | 91.667 | 156 | 13 | 0 | 37 | 192 | 1 | 156 | 3.61e-101 | 298 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048633.01 | MsG0880043948.01 | 0.943915 | 5.068783e-103 | 7.035317e-98 |
| MsG0080048652.01 | MsG0880043948.01 | 0.885489 | 7.781153e-72 | 5.351058e-68 |
| MsG0080048694.01 | MsG0880043948.01 | -0.820034 | 8.487913e-53 | 6.641693e-50 |
| MsG0080048695.01 | MsG0880043948.01 | -0.819839 | 9.407509e-53 | 7.321030e-50 |
| MsG0080048948.01 | MsG0880043948.01 | -0.803183 | 3.936632e-49 | 1.965335e-46 |
| MsG0180001147.01 | MsG0880043948.01 | -0.800307 | 1.532707e-48 | 7.113299e-46 |
| MsG0180001234.01 | MsG0880043948.01 | 0.803678 | 3.109037e-49 | 1.571961e-46 |
| MsG0880043948.01 | MsG0880043951.01 | 0.855029 | 8.299644e-62 | 1.890182e-58 |
| MsG0880043948.01 | MsG0880043961.01 | 0.815995 | 6.944893e-52 | 4.861812e-49 |
| MsG0880043948.01 | MsG0880043983.01 | 0.893417 | 6.410052e-75 | 6.099334e-71 |
| MsG0880043948.01 | MsG0880043989.01 | 0.812786 | 3.558027e-51 | 2.282943e-48 |
| MsG0880043948.01 | MsG0880044688.01 | 0.826173 | 3.137345e-54 | 2.920185e-51 |
| MsG0880043948.01 | MsG0880044984.01 | 0.817045 | 4.041142e-52 | 2.911608e-49 |
| MsG0880043948.01 | MsG0880046174.01 | -0.812659 | 3.792288e-51 | 2.425269e-48 |
| MsG0880043948.01 | MsG0880047450.01 | 0.800203 | 1.609286e-48 | 7.448509e-46 |
| MsG0180002808.01 | MsG0880043948.01 | 0.817893 | 2.604135e-52 | 1.920214e-49 |
| MsG0180004124.01 | MsG0880043948.01 | -0.845896 | 3.050448e-59 | 5.159898e-56 |
| MsG0180004125.01 | MsG0880043948.01 | -0.843755 | 1.153143e-58 | 1.822231e-55 |
| MsG0180004559.01 | MsG0880043948.01 | 0.828297 | 9.720135e-55 | 9.621524e-52 |
| MsG0180004688.01 | MsG0880043948.01 | 0.805909 | 1.063190e-49 | 5.693332e-47 |
| MsG0180005002.01 | MsG0880043948.01 | 0.808161 | 3.548249e-50 | 2.014169e-47 |
| MsG0780040878.01 | MsG0880043948.01 | 0.808313 | 3.293281e-50 | 1.876866e-47 |
| MsG0780041100.01 | MsG0880043948.01 | 0.840819 | 6.912188e-58 | 9.963226e-55 |
| MsG0780041271.01 | MsG0880043948.01 | 0.824391 | 8.280608e-54 | 7.324340e-51 |
| MsG0780041820.01 | MsG0880043948.01 | 0.815330 | 9.769276e-52 | 6.715603e-49 |
| MsG0880043261.01 | MsG0880043948.01 | 0.834101 | 3.641162e-56 | 4.277556e-53 |
| MsG0380013892.01 | MsG0880043948.01 | -0.817292 | 3.557223e-52 | 2.580110e-49 |
| MsG0380013928.01 | MsG0880043948.01 | -0.807803 | 4.228919e-50 | 2.377912e-47 |
| MsG0380013986.01 | MsG0880043948.01 | -0.823473 | 1.358877e-53 | 1.171193e-50 |
| MsG0380013997.01 | MsG0880043948.01 | -0.810034 | 1.408769e-50 | 8.402881e-48 |
| MsG0380014016.01 | MsG0880043948.01 | -0.818588 | 1.812044e-52 | 1.361978e-49 |
| MsG0380014029.01 | MsG0880043948.01 | -0.810824 | 9.511782e-51 | 5.793113e-48 |
| MsG0380014881.01 | MsG0880043948.01 | 0.825626 | 4.230828e-54 | 3.877077e-51 |
| MsG0680031841.01 | MsG0880043948.01 | 0.808705 | 2.716218e-50 | 1.563869e-47 |
| MsG0680035349.01 | MsG0880043948.01 | 0.805532 | 1.275660e-49 | 6.765055e-47 |
| MsG0480019028.01 | MsG0880043948.01 | -0.832118 | 1.134686e-55 | 1.256214e-52 |
| MsG0480019635.01 | MsG0880043948.01 | 0.809432 | 1.897483e-50 | 1.113914e-47 |
| MsG0480019666.01 | MsG0880043948.01 | 0.805239 | 1.469728e-49 | 7.735809e-47 |
| MsG0480020051.01 | MsG0880043948.01 | -0.806852 | 6.726258e-50 | 3.689895e-47 |
| MsG0480023195.01 | MsG0880043948.01 | 0.892768 | 1.170562e-74 | 1.084613e-70 |
| MsG0480023322.01 | MsG0880043948.01 | 0.838265 | 3.187423e-57 | 4.246330e-54 |
| MsG0480023324.01 | MsG0880043948.01 | 0.808575 | 2.895031e-50 | 1.661240e-47 |
| MsG0480023532.01 | MsG0880043948.01 | 0.849984 | 2.275708e-60 | 4.391821e-57 |
| MsG0580025023.01 | MsG0880043948.01 | 0.801306 | 9.584133e-49 | 4.561817e-46 |
| MsG0580025822.01 | MsG0880043948.01 | 0.824589 | 7.436963e-54 | 6.616819e-51 |
| MsG0380015552.01 | MsG0880043948.01 | 0.826301 | 2.923972e-54 | 2.731477e-51 |
| MsG0380015691.01 | MsG0880043948.01 | 0.817980 | 2.488666e-52 | 1.839428e-49 |
| MsG0380017231.01 | MsG0880043948.01 | 0.858230 | 9.501576e-63 | 2.407954e-59 |
| MsG0380017380.01 | MsG0880043948.01 | 0.807461 | 4.996982e-50 | 2.784999e-47 |
| MsG0380017992.01 | MsG0880043948.01 | 0.819660 | 1.033642e-52 | 8.003663e-50 |
| MsG0580027641.01 | MsG0880043948.01 | 0.832871 | 7.382952e-56 | 8.359399e-53 |
| MsG0580028330.01 | MsG0880043948.01 | 0.805972 | 1.031238e-49 | 5.531249e-47 |
| MsG0580028565.01 | MsG0880043948.01 | 0.817217 | 3.698275e-52 | 2.677026e-49 |
| MsG0580029623.01 | MsG0880043948.01 | 0.824204 | 9.162709e-54 | 8.061945e-51 |
| MsG0280007786.01 | MsG0880043948.01 | 0.803878 | 2.825170e-49 | 1.435927e-46 |
| MsG0280008407.01 | MsG0880043948.01 | 0.858960 | 5.754811e-63 | 1.495062e-59 |
| MsG0280010142.01 | MsG0880043948.01 | -0.814272 | 1.676373e-51 | 1.119805e-48 |
| MsG0280010303.01 | MsG0880043948.01 | 0.841879 | 3.635853e-58 | 5.416440e-55 |
| MsG0780037982.01 | MsG0880043948.01 | -0.825063 | 5.750763e-54 | 5.186080e-51 |
| MsG0780038810.01 | MsG0880043948.01 | 0.822722 | 2.034847e-53 | 1.717033e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043948.01.T01 | MTR_8g045490 | 91.667 | 156 | 13 | 0 | 37 | 192 | 1 | 156 | 9.16e-105 | 298 |
| MsG0880043948.01.T01 | MTR_8g045520 | 82.166 | 157 | 27 | 1 | 37 | 192 | 1 | 157 | 3.30e-92 | 266 |
| MsG0880043948.01.T01 | MTR_8g045400 | 78.344 | 157 | 32 | 2 | 37 | 192 | 1 | 156 | 7.79e-88 | 255 |
| MsG0880043948.01.T01 | MTR_8g045570 | 75.658 | 152 | 37 | 0 | 37 | 188 | 1 | 152 | 1.05e-84 | 247 |
| MsG0880043948.01.T01 | MTR_8g045695 | 75.163 | 153 | 37 | 1 | 37 | 189 | 1 | 152 | 3.47e-83 | 243 |
| MsG0880043948.01.T01 | MTR_8g045555 | 75.000 | 152 | 38 | 0 | 37 | 188 | 1 | 152 | 2.13e-81 | 238 |
| MsG0880043948.01.T01 | MTR_8g045300 | 71.154 | 156 | 44 | 1 | 37 | 191 | 1 | 156 | 4.25e-81 | 238 |
| MsG0880043948.01.T01 | MTR_8g045735 | 69.935 | 153 | 45 | 1 | 37 | 189 | 1 | 152 | 1.02e-77 | 229 |
| MsG0880043948.01.T01 | MTR_8g045665 | 70.588 | 153 | 44 | 1 | 37 | 189 | 1 | 152 | 1.27e-76 | 226 |
| MsG0880043948.01.T01 | MTR_8g045640 | 69.935 | 153 | 45 | 1 | 37 | 189 | 1 | 152 | 5.87e-76 | 225 |
| MsG0880043948.01.T01 | MTR_8g045560 | 68.627 | 153 | 47 | 1 | 37 | 189 | 1 | 152 | 3.26e-74 | 220 |
| MsG0880043948.01.T01 | MTR_1g030810 | 43.137 | 153 | 84 | 2 | 37 | 187 | 1 | 152 | 4.48e-39 | 131 |
| MsG0880043948.01.T01 | MTR_1g030820 | 40.523 | 153 | 88 | 2 | 37 | 187 | 1 | 152 | 9.18e-39 | 130 |
| MsG0880043948.01.T01 | MTR_1g030840 | 37.179 | 156 | 90 | 4 | 37 | 185 | 1 | 155 | 2.90e-27 | 101 |
| MsG0880043948.01.T01 | MTR_8g012550 | 33.562 | 146 | 94 | 3 | 42 | 186 | 8 | 151 | 5.24e-25 | 95.5 |
| MsG0880043948.01.T01 | MTR_1g031640 | 37.162 | 148 | 84 | 5 | 43 | 188 | 7 | 147 | 9.38e-24 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043948.01.T01 | AT5G28010 | 35.570 | 149 | 93 | 3 | 39 | 185 | 15 | 162 | 6.04e-25 | 95.9 |
| MsG0880043948.01.T01 | AT5G28010 | 35.570 | 149 | 93 | 3 | 39 | 185 | 15 | 162 | 6.04e-25 | 95.9 |
| MsG0880043948.01.T01 | AT1G70890 | 36.913 | 149 | 91 | 3 | 39 | 185 | 7 | 154 | 2.28e-24 | 94.0 |
| MsG0880043948.01.T01 | AT1G70840 | 32.886 | 149 | 97 | 3 | 39 | 185 | 20 | 167 | 2.77e-22 | 89.0 |
| MsG0880043948.01.T01 | AT1G23120 | 30.323 | 155 | 103 | 3 | 31 | 185 | 45 | 194 | 7.96e-22 | 88.6 |
| MsG0880043948.01.T01 | AT1G70830 | 34.228 | 149 | 95 | 3 | 39 | 185 | 22 | 169 | 1.11e-21 | 87.4 |
| MsG0880043948.01.T01 | AT1G70830 | 34.228 | 149 | 95 | 3 | 39 | 185 | 22 | 169 | 2.45e-21 | 87.4 |
| MsG0880043948.01.T01 | AT1G23120 | 30.872 | 149 | 98 | 3 | 37 | 185 | 1 | 144 | 2.89e-21 | 85.5 |
| MsG0880043948.01.T01 | AT5G28000 | 32.886 | 149 | 97 | 3 | 39 | 185 | 13 | 160 | 8.54e-21 | 84.7 |
| MsG0880043948.01.T01 | AT1G70830 | 34.228 | 149 | 95 | 3 | 39 | 185 | 22 | 169 | 1.00e-20 | 86.7 |
| MsG0880043948.01.T01 | AT1G70830 | 34.228 | 149 | 95 | 3 | 39 | 185 | 22 | 169 | 2.12e-20 | 87.0 |
| MsG0880043948.01.T01 | AT1G70830 | 32.886 | 149 | 97 | 3 | 39 | 185 | 184 | 331 | 7.83e-19 | 82.8 |
| MsG0880043948.01.T01 | AT1G70870 | 35.762 | 151 | 84 | 4 | 37 | 187 | 1 | 138 | 3.32e-20 | 82.8 |
| MsG0880043948.01.T01 | AT1G70830 | 32.886 | 149 | 97 | 3 | 39 | 185 | 137 | 284 | 3.29e-19 | 83.2 |
| MsG0880043948.01.T01 | AT1G70850 | 32.215 | 149 | 98 | 3 | 39 | 185 | 9 | 156 | 4.38e-19 | 82.0 |
| MsG0880043948.01.T01 | AT4G23670 | 34.641 | 153 | 97 | 3 | 37 | 188 | 1 | 151 | 9.04e-19 | 79.3 |
| MsG0880043948.01.T01 | AT1G70850 | 32.215 | 149 | 98 | 3 | 39 | 185 | 9 | 156 | 9.14e-19 | 82.4 |
| MsG0880043948.01.T01 | AT1G70850 | 32.374 | 139 | 91 | 3 | 49 | 185 | 175 | 312 | 2.80e-17 | 78.6 |
| MsG0880043948.01.T01 | AT1G70850 | 32.215 | 149 | 98 | 3 | 39 | 185 | 9 | 156 | 9.14e-19 | 82.4 |
| MsG0880043948.01.T01 | AT1G70850 | 32.374 | 139 | 91 | 3 | 49 | 185 | 175 | 312 | 2.80e-17 | 78.6 |
| MsG0880043948.01.T01 | AT1G70880 | 30.201 | 149 | 101 | 3 | 39 | 185 | 8 | 155 | 7.56e-18 | 77.0 |
| MsG0880043948.01.T01 | AT1G23130 | 28.289 | 152 | 107 | 2 | 35 | 185 | 6 | 156 | 1.31e-17 | 76.3 |
| MsG0880043948.01.T01 | AT2G01520 | 30.719 | 153 | 103 | 3 | 37 | 188 | 1 | 151 | 6.02e-16 | 72.0 |
| MsG0880043948.01.T01 | AT4G23680 | 30.719 | 153 | 103 | 3 | 37 | 188 | 1 | 151 | 6.08e-16 | 72.0 |
| MsG0880043948.01.T01 | AT1G35260 | 28.276 | 145 | 100 | 3 | 43 | 185 | 6 | 148 | 1.07e-15 | 71.2 |
| MsG0880043948.01.T01 | AT1G14930 | 31.677 | 161 | 93 | 5 | 37 | 189 | 1 | 152 | 1.40e-15 | 70.9 |
| MsG0880043948.01.T01 | AT4G14060 | 31.373 | 153 | 102 | 3 | 37 | 188 | 1 | 151 | 8.85e-15 | 68.9 |
| MsG0880043948.01.T01 | AT2G01530 | 30.719 | 153 | 103 | 3 | 37 | 188 | 1 | 151 | 1.12e-14 | 68.6 |
| MsG0880043948.01.T01 | AT1G24020 | 31.410 | 156 | 105 | 2 | 37 | 191 | 1 | 155 | 1.23e-13 | 65.9 |
| MsG0880043948.01.T01 | AT1G24020 | 31.410 | 156 | 105 | 2 | 37 | 191 | 1 | 155 | 1.23e-13 | 65.9 |
| MsG0880043948.01.T01 | AT1G35310 | 26.087 | 138 | 99 | 3 | 49 | 185 | 12 | 147 | 2.43e-13 | 65.1 |
| MsG0880043948.01.T01 | AT1G30990 | 30.667 | 150 | 100 | 4 | 37 | 185 | 1 | 147 | 1.00e-12 | 63.2 |
| MsG0880043948.01.T01 | AT1G14940 | 29.333 | 150 | 103 | 3 | 37 | 185 | 1 | 148 | 7.15e-12 | 61.2 |
| MsG0880043948.01.T01 | AT1G14950 | 28.289 | 152 | 106 | 3 | 37 | 187 | 1 | 150 | 2.88e-11 | 59.3 |
| MsG0880043948.01.T01 | AT3G26460 | 30.769 | 156 | 100 | 6 | 37 | 188 | 1 | 152 | 4.46e-11 | 58.9 |
Find 31 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCACCTTCATGAAGTT+TGG | 0.293563 | 8:+33246268 | None:intergenic |
| CTTATCTTTCTTCAAAGAAA+TGG | 0.345277 | 8:-33246408 | MsG0880043948.01.T01:CDS |
| GATGATGAGATTGAAGATTC+TGG | 0.352230 | 8:-33246830 | MsG0880043948.01.T01:CDS |
| ATGGTACTGCTGCTGCTAAA+TGG | 0.372464 | 8:-33245283 | MsG0880043948.01.T01:CDS |
| CACCCTTATCAATTACTTCA+AGG | 0.382574 | 8:+33245306 | None:intergenic |
| TTATAGAGCTATCTTTGCTT+TGG | 0.392094 | 8:+33245163 | None:intergenic |
| CATCCTTGAAGTAATTGATA+AGG | 0.438738 | 8:-33245309 | MsG0880043948.01.T01:CDS |
| AAGTATTCCATGTAGCCATT+TGG | 0.448595 | 8:+33245221 | None:intergenic |
| AACACTTATAAGCTCTTTGG+TGG | 0.457999 | 8:-33245365 | MsG0880043948.01.T01:CDS |
| AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8:-33246224 | MsG0880043948.01.T01:intron |
| AACTTCATGAAGGTGAAGAT+TGG | 0.483425 | 8:-33246265 | MsG0880043948.01.T01:CDS |
| ATCCTTGAAGTAATTGATAA+GGG | 0.486541 | 8:-33245308 | MsG0880043948.01.T01:CDS |
| AGATATTGATGAGCACTATA+AGG | 0.500590 | 8:-33245342 | MsG0880043948.01.T01:CDS |
| GGTAAGCTTAGTACTGAAGT+AGG | 0.505197 | 8:-33246377 | MsG0880043948.01.T01:CDS |
| TATTCCATGTAGCCATTTGG+AGG | 0.517921 | 8:+33245224 | None:intergenic |
| AGATTGGCATCACACTGATT+CGG | 0.519723 | 8:-33246249 | MsG0880043948.01.T01:CDS |
| AATGGCTACATGGAATACTT+TGG | 0.525683 | 8:-33245218 | MsG0880043948.01.T01:CDS |
| TGACCCTCCAAATGGCTACA+TGG | 0.526835 | 8:-33245228 | MsG0880043948.01.T01:CDS |
| GAGGATATTGACCCTCCAAA+TGG | 0.540200 | 8:-33245236 | MsG0880043948.01.T01:CDS |
| GAAGTAATTGATAAGGGTGA+TGG | 0.557588 | 8:-33245302 | MsG0880043948.01.T01:CDS |
| TATGATGAACTCTTTCACAA+AGG | 0.564152 | 8:+33246291 | None:intergenic |
| GTAAGCTTAGTACTGAAGTA+GGG | 0.586943 | 8:-33246376 | MsG0880043948.01.T01:CDS |
| CATCATACCAAACTTCATGA+AGG | 0.595182 | 8:-33246275 | MsG0880043948.01.T01:CDS |
| ACACTGATTCGGTTAAACAC+TGG | 0.614381 | 8:-33246238 | MsG0880043948.01.T01:CDS |
| ATAATTCACAACAGATGGCA+AGG | 0.621271 | 8:-33245438 | MsG0880043948.01.T01:intron |
| AGATTGTAGAACTTGTCAGC+GGG | 0.623742 | 8:+33246344 | None:intergenic |
| ATTCCATGTAGCCATTTGGA+GGG | 0.625101 | 8:+33245225 | None:intergenic |
| TTCAAAGAAATGGTGCTCTG+TGG | 0.636927 | 8:-33246398 | MsG0880043948.01.T01:CDS |
| TGAATATGAAAAGATCAATG+AGG | 0.658576 | 8:-33245255 | MsG0880043948.01.T01:CDS |
| TAGATTGTAGAACTTGTCAG+CGG | 0.690373 | 8:+33246343 | None:intergenic |
| ACGGTGATGATGATGAACGA+CGG | 0.783675 | 8:-33246857 | MsG0880043948.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCTATACAAAAATATTTAT+TGG | - | Chr8:33246451-33246470 | MsG0880043948.01.T01:intron | 10.0% |
| !!! | ATAGTTTATTTGTTAAAAAA+TGG | - | Chr8:33246491-33246510 | MsG0880043948.01.T01:intron | 10.0% |
| !!! | TAGTTTATTTGTTAAAAAAT+GGG | - | Chr8:33246492-33246511 | MsG0880043948.01.T01:intron | 10.0% |
| !!! | TATTTTTGTATAGAAAAAAA+AGG | + | Chr8:33246446-33246465 | None:intergenic | 10.0% |
| !! | AAAAAAAATCAACAATCATT+TGG | - | Chr8:33246186-33246205 | MsG0880043948.01.T01:intron | 15.0% |
| !! | AAAAAAATCAACAATCATTT+GGG | - | Chr8:33246187-33246206 | MsG0880043948.01.T01:intron | 15.0% |
| !!! | TATTGATTATTATACAATAG+AGG | + | Chr8:33245512-33245531 | None:intergenic | 15.0% |
| !! | AATCAAATAAGATGATCATT+TGG | + | Chr8:33245861-33245880 | None:intergenic | 20.0% |
| !!! | TGTTGATTTTTTTTGTCATA+AGG | + | Chr8:33246180-33246199 | None:intergenic | 20.0% |
| ! | AAAAACACTTATAAGCTCTT+TGG | - | Chr8:33246655-33246674 | MsG0880043948.01.T01:intron | 25.0% |
| ! | AACCACAGTTATTCTTTATA+TGG | + | Chr8:33246401-33246420 | None:intergenic | 25.0% |
| ! | AGATTATGAGATCTCAAAAA+TGG | - | Chr8:33246283-33246302 | MsG0880043948.01.T01:CDS | 25.0% |
| ! | ATAAGAAAGAAACAAGTACA+TGG | - | Chr8:33245968-33245987 | MsG0880043948.01.T01:intron | 25.0% |
| ! | ATCCTTGAAGTAATTGATAA+GGG | - | Chr8:33246715-33246734 | MsG0880043948.01.T01:intron | 25.0% |
| ! | CTTATCTTTCTTCAAAGAAA+TGG | - | Chr8:33245615-33245634 | MsG0880043948.01.T01:intron | 25.0% |
| ! | TGAATATGAAAAGATCAATG+AGG | - | Chr8:33246768-33246787 | MsG0880043948.01.T01:intron | 25.0% |
| !! | TCTATCTTGAAAATGGTTTT+CGG | + | Chr8:33246069-33246088 | None:intergenic | 25.0% |
| AAACCATTTCCACAGAAAAA+TGG | - | Chr8:33245216-33245235 | MsG0880043948.01.T01:CDS | 30.0% | |
| AACATAGTCAAAAGTAGAAG+AGG | + | Chr8:33246111-33246130 | None:intergenic | 30.0% | |
| AACCATTTCCACAGAAAAAT+GGG | - | Chr8:33245217-33245236 | MsG0880043948.01.T01:CDS | 30.0% | |
| AGATATTGATGAGCACTATA+AGG | - | Chr8:33246681-33246700 | MsG0880043948.01.T01:intron | 30.0% | |
| AGCCATATAAAGAATAACTG+TGG | - | Chr8:33246396-33246415 | MsG0880043948.01.T01:CDS | 30.0% | |
| CATCCTTGAAGTAATTGATA+AGG | - | Chr8:33246714-33246733 | MsG0880043948.01.T01:intron | 30.0% | |
| TACATTCTACAAACCAAACA+TGG | - | Chr8:33246021-33246040 | MsG0880043948.01.T01:intron | 30.0% | |
| TATGATGAACTCTTTCACAA+AGG | + | Chr8:33245735-33245754 | None:intergenic | 30.0% | |
| TGCAATCCGATTTCTATATA+AGG | - | Chr8:33245536-33245555 | MsG0880043948.01.T01:intron | 30.0% | |
| TTATAGAGCTATCTTTGCTT+TGG | + | Chr8:33246863-33246882 | None:intergenic | 30.0% | |
| TTCGGGAAGAAAAAAAATCA+GGG | + | Chr8:33246051-33246070 | None:intergenic | 30.0% | |
| TTTCGGGAAGAAAAAAAATC+AGG | + | Chr8:33246052-33246071 | None:intergenic | 30.0% | |
| ! | CTATCTTGAAAATGGTTTTC+GGG | + | Chr8:33246068-33246087 | None:intergenic | 30.0% |
| ! | TGAAGCATCTATCTTGAAAA+TGG | + | Chr8:33246076-33246095 | None:intergenic | 30.0% |
| ! | TTTTGTCATAAGGTTCTCTA+GGG | + | Chr8:33246170-33246189 | None:intergenic | 30.0% |
| ! | TTTTTGTCATAAGGTTCTCT+AGG | + | Chr8:33246171-33246190 | None:intergenic | 30.0% |
| !! | CTACTTTTGACTATGTTGAA+CGG | - | Chr8:33246114-33246133 | MsG0880043948.01.T01:intron | 30.0% |
| !! | TACTTTTGACTATGTTGAAC+GGG | - | Chr8:33246115-33246134 | MsG0880043948.01.T01:intron | 30.0% |
| AAACACTGGACTTATGTCAT+AGG | - | Chr8:33245799-33245818 | MsG0880043948.01.T01:intron | 35.0% | |
| AAACCATTTCCACAGCAAAA+TGG | - | Chr8:33245259-33245278 | MsG0880043948.01.T01:CDS | 35.0% | |
| AACACTTATAAGCTCTTTGG+TGG | - | Chr8:33246658-33246677 | MsG0880043948.01.T01:intron | 35.0% | |
| AACTTCATGAAGGTGAAGAT+TGG | - | Chr8:33245758-33245777 | MsG0880043948.01.T01:intron | 35.0% | |
| AAGTATTCCATGTAGCCATT+TGG | + | Chr8:33246805-33246824 | None:intergenic | 35.0% | |
| AATGGCTACATGGAATACTT+TGG | - | Chr8:33246805-33246824 | MsG0880043948.01.T01:intron | 35.0% | |
| ACTTTCATCAACTCACTCAT+AGG | - | Chr8:33245574-33245593 | MsG0880043948.01.T01:intron | 35.0% | |
| ATAATTCACAACAGATGGCA+AGG | - | Chr8:33246585-33246604 | MsG0880043948.01.T01:intron | 35.0% | |
| ATAGTCAAAAGTAGAAGAGG+TGG | + | Chr8:33246108-33246127 | None:intergenic | 35.0% | |
| ATCTTCACCTTCATGAAGTT+TGG | + | Chr8:33245758-33245777 | None:intergenic | 35.0% | |
| CACCCTTATCAATTACTTCA+AGG | + | Chr8:33246720-33246739 | None:intergenic | 35.0% | |
| CATCATACCAAACTTCATGA+AGG | - | Chr8:33245748-33245767 | MsG0880043948.01.T01:intron | 35.0% | |
| CCATCATAATTCACAACAGA+TGG | - | Chr8:33246580-33246599 | MsG0880043948.01.T01:intron | 35.0% | |
| CCATCTGTTGTGAATTATGA+TGG | + | Chr8:33246583-33246602 | None:intergenic | 35.0% | |
| GAAGTAATTGATAAGGGTGA+TGG | - | Chr8:33246721-33246740 | MsG0880043948.01.T01:intron | 35.0% | |
| GATGATGAGATTGAAGATTC+TGG | - | Chr8:33245193-33245212 | MsG0880043948.01.T01:CDS | 35.0% | |
| GCCATGCCTTATATAGAAAT+CGG | + | Chr8:33245545-33245564 | None:intergenic | 35.0% | |
| GTGTATGAAGCAATTACGTT+GGG | - | Chr8:33245411-33245430 | MsG0880043948.01.T01:CDS | 35.0% | |
| TAGATTGTAGAACTTGTCAG+CGG | + | Chr8:33245683-33245702 | None:intergenic | 35.0% | |
| TCCGATTTCTATATAAGGCA+TGG | - | Chr8:33245541-33245560 | MsG0880043948.01.T01:intron | 35.0% | |
| TCGGGAAGAAAAAAAATCAG+GGG | + | Chr8:33246050-33246069 | None:intergenic | 35.0% | |
| TGATCATTTGGTTATCGATC+AGG | + | Chr8:33245849-33245868 | None:intergenic | 35.0% | |
| TGTTGTGAATTATGATGGCA+CGG | + | Chr8:33246578-33246597 | None:intergenic | 35.0% | |
| ! | ATAAGGTTCTCTAGGGAATA+TGG | + | Chr8:33246163-33246182 | None:intergenic | 35.0% |
| ! | GTAAGCTTAGTACTGAAGTA+GGG | - | Chr8:33245647-33245666 | MsG0880043948.01.T01:intron | 35.0% |
| ! | TTTCCACAGAAAAATGGGTT+TGG | - | Chr8:33245222-33245241 | MsG0880043948.01.T01:CDS | 35.0% |
| ! | TTTCCACAGCAAAATGGTTT+TGG | - | Chr8:33245265-33245284 | MsG0880043948.01.T01:CDS | 35.0% |
| !! | AAACCATTTTGCTGTGGAAA+TGG | + | Chr8:33245265-33245284 | None:intergenic | 35.0% |
| !! | AACCCATTTTTCTGTGGAAA+TGG | + | Chr8:33245222-33245241 | None:intergenic | 35.0% |
| !! | TCAGTTTGTTTTCGCGTTTT+GGG | - | Chr8:33245388-33245407 | MsG0880043948.01.T01:CDS | 35.0% |
| !! | TTCAGTTTGTTTTCGCGTTT+TGG | - | Chr8:33245387-33245406 | MsG0880043948.01.T01:CDS | 35.0% |
| AAATCAGGGGTAACCATGTT+TGG | + | Chr8:33246037-33246056 | None:intergenic | 40.0% | |
| AGATTGTAGAACTTGTCAGC+GGG | + | Chr8:33245682-33245701 | None:intergenic | 40.0% | |
| ATTCCATGTAGCCATTTGGA+GGG | + | Chr8:33246801-33246820 | None:intergenic | 40.0% | |
| CGTTGGGATTTATGCACATA+AGG | - | Chr8:33245427-33245446 | MsG0880043948.01.T01:CDS | 40.0% | |
| GATGAGATTGAAGATTCCAG+TGG | - | Chr8:33245339-33245358 | MsG0880043948.01.T01:CDS | 40.0% | |
| GGTGTATGAAGCAATTACGT+TGG | - | Chr8:33245410-33245429 | MsG0880043948.01.T01:CDS | 40.0% | |
| GTTGTGAATTATGATGGCAC+GGG | + | Chr8:33246577-33246596 | None:intergenic | 40.0% | |
| TATTCCATGTAGCCATTTGG+AGG | + | Chr8:33246802-33246821 | None:intergenic | 40.0% | |
| TTATGCACTATAACCACTCC+CGG | - | Chr8:33245456-33245475 | MsG0880043948.01.T01:intron | 40.0% | |
| TTCAAAGAAATGGTGCTCTG+TGG | - | Chr8:33245625-33245644 | MsG0880043948.01.T01:intron | 40.0% | |
| ! | AGATTGGCATCACACTGATT+CGG | - | Chr8:33245774-33245793 | MsG0880043948.01.T01:intron | 40.0% |
| ! | ATGCCAAAACCATTTTGCTG+TGG | + | Chr8:33245271-33245290 | None:intergenic | 40.0% |
| ! | GGTAAGCTTAGTACTGAAGT+AGG | - | Chr8:33245646-33245665 | MsG0880043948.01.T01:intron | 40.0% |
| !! | ACACTGATTCGGTTAAACAC+TGG | - | Chr8:33245785-33245804 | MsG0880043948.01.T01:intron | 40.0% |
| !! | ACTCCAAACCCATTTTTCTG+TGG | + | Chr8:33245228-33245247 | None:intergenic | 40.0% |
| !! | CAGTTTGTTTTCGCGTTTTG+GGG | - | Chr8:33245389-33245408 | MsG0880043948.01.T01:CDS | 40.0% |
| !! | GAGTGAGTTGATGAAAGTGT+AGG | + | Chr8:33245572-33245591 | None:intergenic | 40.0% |
| !!! | GCAAAATGGTTTTGGCATTC+CGG | - | Chr8:33245273-33245292 | MsG0880043948.01.T01:CDS | 40.0% |
| ATGGTACTGCTGCTGCTAAA+TGG | - | Chr8:33246740-33246759 | MsG0880043948.01.T01:intron | 45.0% | |
| ATTATATGTGCTCTCCCACC+CGG | + | Chr8:33245478-33245497 | None:intergenic | 45.0% | |
| GAGGATATTGACCCTCCAAA+TGG | - | Chr8:33246787-33246806 | MsG0880043948.01.T01:intron | 45.0% | |
| GGGAGTGGTTATAGTGCATA+AGG | + | Chr8:33245457-33245476 | None:intergenic | 45.0% | |
| TATGCACTATAACCACTCCC+GGG | - | Chr8:33245457-33245476 | MsG0880043948.01.T01:intron | 45.0% | |
| TCGTTCATCATCATCACCAC+TGG | + | Chr8:33245358-33245377 | None:intergenic | 45.0% | |
| ! | ACGGTGATGATGATGAACGA+CGG | - | Chr8:33245166-33245185 | MsG0880043948.01.T01:CDS | 45.0% |
| ! | GTGGTGATGATGATGAACGA+CGG | - | Chr8:33245358-33245377 | MsG0880043948.01.T01:CDS | 45.0% |
| ! | TGGGTTTGGAGTACAACTCA+CGG | - | Chr8:33245236-33245255 | MsG0880043948.01.T01:CDS | 45.0% |
| !!! | ATGGTTTTGGCATTCCGGTA+CGG | - | Chr8:33245278-33245297 | MsG0880043948.01.T01:CDS | 45.0% |
| TGACCCTCCAAATGGCTACA+TGG | - | Chr8:33246795-33246814 | MsG0880043948.01.T01:intron | 50.0% | |
| TTATATGTGCTCTCCCACCC+GGG | + | Chr8:33245477-33245496 | None:intergenic | 50.0% | |
| ! | TTCCGGTACGGTGATGATGA+CGG | - | Chr8:33245290-33245309 | MsG0880043948.01.T01:CDS | 50.0% |
| CACCGTCATCATCACCGTAC+CGG | + | Chr8:33245295-33245314 | None:intergenic | 55.0% | |
| CACTATAACCACTCCCGGGT+GGG | - | Chr8:33245461-33245480 | MsG0880043948.01.T01:intron | 55.0% | |
| GCACTATAACCACTCCCGGG+TGG | - | Chr8:33245460-33245479 | MsG0880043948.01.T01:intron | 60.0% | |
| TGTGCTCTCCCACCCGGGAG+TGG | + | Chr8:33245472-33245491 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 33245163 | 33246882 | 33245163 | ID=MsG0880043948.01;Name=MsG0880043948.01 |
| Chr8 | mRNA | 33245163 | 33246882 | 33245163 | ID=MsG0880043948.01.T01;Parent=MsG0880043948.01;Name=MsG0880043948.01.T01;_AED=0.50;_eAED=0.59;_QI=0|0|0|1|0.5|0.33|3|0|192 |
| Chr8 | exon | 33246807 | 33246882 | 33246807 | ID=MsG0880043948.01.T01:exon:10154;Parent=MsG0880043948.01.T01 |
| Chr8 | exon | 33246225 | 33246443 | 33246225 | ID=MsG0880043948.01.T01:exon:10153;Parent=MsG0880043948.01.T01 |
| Chr8 | exon | 33245163 | 33245446 | 33245163 | ID=MsG0880043948.01.T01:exon:10152;Parent=MsG0880043948.01.T01 |
| Chr8 | CDS | 33246807 | 33246882 | 33246807 | ID=MsG0880043948.01.T01:cds;Parent=MsG0880043948.01.T01 |
| Chr8 | CDS | 33246225 | 33246443 | 33246225 | ID=MsG0880043948.01.T01:cds;Parent=MsG0880043948.01.T01 |
| Chr8 | CDS | 33245163 | 33245446 | 33245163 | ID=MsG0880043948.01.T01:cds;Parent=MsG0880043948.01.T01 |
| Gene Sequence |
| Protein sequence |
