AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002504.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002504.01.T01 MTR_1g051155 71.429 147 10 2 4 118 321 467 1.42e-60 192
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002504.01.T01 AT2G41020 54.861 144 32 5 4 118 324 463 6.01e-36 127

Find 49 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGGAGTAAAATTTGAATT+TGG 0.219113 1:-39340771 None:intergenic
GCCATCGCCCCTCTTGGATA+TGG 0.227356 1:-39340790 None:intergenic
CAGGGAAAATTCTGATAAAA+TGG 0.247401 1:+39339082 MsG0180002502.01.T01:CDS
CTGTCCACTCGCTTGGTTAC+AGG 0.249363 1:-39341034 None:intergenic
CTGGGAATTTGGAGAACTTT+TGG 0.259563 1:+39341395 MsG0180002504.01.T01:three_prime_UTR
GATTATCAAAATCGGTTATC+TGG 0.299444 1:-39341071 None:intergenic
GTTATTCAGGTATCTCAAAA+AGG 0.364878 1:-39341361 None:intergenic
ATCGCTGCCATCGCCCCTCT+TGG 0.371137 1:-39340796 None:intergenic
GTTGAAGAGGACTTGAAGAT+TGG 0.374909 1:+39341186 MsG0180002504.01.T01:three_prime_UTR
TACAATTTATTTCAGGGTGG+TGG 0.391709 1:+39340152 MsG0180002502.01.T01:intron
TGCTTCAAGATTATCAAAAT+CGG 0.404402 1:-39341079 None:intergenic
CCATCGCCCCTCTTGGATAT+GGG 0.408237 1:-39340789 None:intergenic
AGAAGTAAAATATGTTATTC+AGG 0.410206 1:-39341374 None:intergenic
TGGGCTTGGCGATGCAGATT+AGG 0.423522 1:+39340818 MsG0180002502.01.T01:CDS
GGCGATGGCAGCGATGGGCT+TGG 0.424737 1:+39340804 MsG0180002502.01.T01:CDS
TTGCTGATTAATCAAATTCG+AGG 0.438832 1:-39339042 None:intergenic
TTGAAGAGGACTTGAAGATT+GGG 0.440281 1:+39341187 MsG0180002504.01.T01:three_prime_UTR
GTCTGAAAGGTGTGCAGCCA+CGG 0.441577 1:+39340175 MsG0180002502.01.T01:CDS
TTCAGCGTTCTTTCGTAAAA+CGG 0.445046 1:-39340727 None:intergenic
TTCTTTCGTAAAACGGCTCC+AGG 0.451666 1:-39340720 None:intergenic
TGTTGTGCATTAATATTGTA+TGG 0.453334 1:+39340974 MsG0180002504.01.T01:three_prime_UTR
TTCAGGGTGGTGGGTCTGAA+AGG 0.456465 1:+39340162 MsG0180002502.01.T01:intron
TATTATCTGTAAGTTAGCTT+AGG 0.465819 1:+39340922 MsG0180002504.01.T01:three_prime_UTR
ATAACTTCTGTCCACTCGCT+TGG 0.466570 1:-39341041 None:intergenic
AAGAGGGGCGATGGCAGCGA+TGG 0.479384 1:+39340798 MsG0180002502.01.T01:CDS
AAAGCAGTGCTCCACATCCC+AGG 0.479623 1:+39339063 MsG0180002502.01.T01:CDS
TTAATGCACAACAGCAAAGC+TGG 0.487203 1:-39340964 None:intergenic
CGTAAAACGGCTCCAGGTGA+TGG 0.497691 1:-39340714 None:intergenic
ACAATTTATTTCAGGGTGGT+GGG 0.501014 1:+39340153 MsG0180002502.01.T01:intron
TGAAGCATTCAGACAAGTGA+TGG 0.506326 1:+39341095 MsG0180002504.01.T01:three_prime_UTR
TATCTGTCTCGGGTCAGCTC+AGG 0.516500 1:-39341143 None:intergenic
TCTGAAAGGTGTGCAGCCAC+GGG 0.518958 1:+39340176 MsG0180002502.01.T01:CDS
TCATGAATTGAAAGTTGAAG+AGG 0.521160 1:+39341173 MsG0180002504.01.T01:three_prime_UTR
CCCATATCCAAGAGGGGCGA+TGG 0.528541 1:+39340789 MsG0180002502.01.T01:CDS
ACGGCTCCAGGTGATGGATA+AGG 0.531601 1:-39340708 None:intergenic
AGAGGGGCGATGGCAGCGAT+GGG 0.546728 1:+39340799 MsG0180002502.01.T01:CDS
CAACGACCTTATCCATCACC+TGG 0.546831 1:+39340702 MsG0180002502.01.T01:CDS
ATTAACATGAAAATACAAAG+AGG 0.555663 1:-39341269 None:intergenic
ATGGCTAGCAAACAGAGGTA+TGG 0.565876 1:+39339101 MsG0180002502.01.T01:intron
GCTGTTGTGTCTGCTGCCCG+TGG 0.593493 1:-39340192 None:intergenic
AAGCAGTGCTCCACATCCCA+GGG 0.615766 1:+39339064 MsG0180002502.01.T01:CDS
GAAGCATTCAGACAAGTGAT+GGG 0.629101 1:+39341096 MsG0180002504.01.T01:three_prime_UTR
GAGGACAAATACTGACATTG+TGG 0.640650 1:-39339023 None:intergenic
TTAACATGAAAATACAAAGA+GGG 0.642466 1:-39341268 None:intergenic
CAATCCTGTAACCAAGCGAG+TGG 0.663594 1:+39341030 MsG0180002504.01.T01:three_prime_UTR
TAAGGTCGTTGTTGAAACAG+AGG 0.669725 1:-39340690 None:intergenic
TTTACTCCCATATCCAAGAG+GGG 0.673158 1:+39340783 MsG0180002502.01.T01:CDS
ATAAAATGGCTAGCAAACAG+AGG 0.677708 1:+39339096 MsG0180002502.01.T01:CDS
ACACGTTTGTGTTGATACGA+TGG 0.678894 1:-39340842 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACAACATATAATTATAA+TGG - Chr1:39339528-39339547 None:intergenic 10.0%
!! ACAAATTTACAATTTATTTC+AGG + Chr1:39340145-39340164 MsG0180002502.01.T01:intron 15.0%
!! AGAATATATTGAAAAATCTA+GGG - Chr1:39340362-39340381 None:intergenic 15.0%
!! CAAATTTACAATTTATTTCA+GGG + Chr1:39340146-39340165 MsG0180002502.01.T01:intron 15.0%
!!! GAAATTTTTATTAATTAAGG+TGG - Chr1:39339657-39339676 None:intergenic 15.0%
!! AGAAGTAAAATATGTTATTC+AGG - Chr1:39341377-39341396 None:intergenic 20.0%
!! ATTAACATGAAAATACAAAG+AGG - Chr1:39341272-39341291 None:intergenic 20.0%
!! ATTGATAAGGGAATAAAAAA+TGG + Chr1:39339961-39339980 MsG0180002502.01.T01:intron 20.0%
!! GAGAATATATTGAAAAATCT+AGG - Chr1:39340363-39340382 None:intergenic 20.0%
!! TAAAAAAGGAGATATTCTAA+AGG - Chr1:39339256-39339275 None:intergenic 20.0%
!! TTAACATGAAAATACAAAGA+GGG - Chr1:39341271-39341290 None:intergenic 20.0%
!! TTGATAAGGGAATAAAAAAT+GGG + Chr1:39339962-39339981 MsG0180002502.01.T01:intron 20.0%
!!! CTTTTATTATCAAAATGTCA+AGG + Chr1:39340402-39340421 MsG0180002502.01.T01:intron 20.0%
!!! GAATAACATATTTTACTTCT+GGG + Chr1:39341377-39341396 MsG0180002504.01.T01:three_prime_UTR 20.0%
!!! GGGGAAATTTTTATTAATTA+AGG - Chr1:39339660-39339679 None:intergenic 20.0%
!!! TACAAGCATATTTTCTTTTA+GGG + Chr1:39339329-39339348 MsG0180002502.01.T01:intron 20.0%
!!! TGAATAACATATTTTACTTC+TGG + Chr1:39341376-39341395 MsG0180002504.01.T01:three_prime_UTR 20.0%
!!! TTACAAGCATATTTTCTTTT+AGG + Chr1:39339328-39339347 MsG0180002502.01.T01:intron 20.0%
!!! TTTTTTATTCCCTTATCAAT+TGG - Chr1:39339961-39339980 None:intergenic 20.0%
! AAAAAGAAAGAATGTACGTA+CGG - Chr1:39340220-39340239 None:intergenic 25.0%
! AAACAAACTAACAAGAAGAT+AGG - Chr1:39340268-39340287 None:intergenic 25.0%
! ACCAAAACTATAATTATGAC+AGG - Chr1:39340605-39340624 None:intergenic 25.0%
! AGTACAATACATTAAAATGG+TGG - Chr1:39339750-39339769 None:intergenic 25.0%
! ATGAAAAATCATATCTGTCT+CGG - Chr1:39341157-39341176 None:intergenic 25.0%
! ATGGGAGTAAAATTTGAATT+TGG - Chr1:39340774-39340793 None:intergenic 25.0%
! ATTGTGAAAATGAAAGTTGA+TGG + Chr1:39340456-39340475 MsG0180002502.01.T01:intron 25.0%
! ATTTACAATTTATTTCAGGG+TGG + Chr1:39340149-39340168 MsG0180002502.01.T01:intron 25.0%
! CTGAGTACAATACATTAAAA+TGG - Chr1:39339753-39339772 None:intergenic 25.0%
! GTACAATACATTAAAATGGT+GGG - Chr1:39339749-39339768 None:intergenic 25.0%
! TAGATTTGCAAAAATACTGT+AGG + Chr1:39339420-39339439 MsG0180002502.01.T01:intron 25.0%
! TGCTTCAAGATTATCAAAAT+CGG - Chr1:39341082-39341101 None:intergenic 25.0%
! TGTTGTGCATTAATATTGTA+TGG + Chr1:39340974-39340993 MsG0180002504.01.T01:three_prime_UTR 25.0%
! TTGTATTGAATCAAACACTA+GGG + Chr1:39339541-39339560 MsG0180002502.01.T01:intron 25.0%
!! ATTTTATCAGAATTTTCCCT+GGG - Chr1:39339083-39339102 None:intergenic 25.0%
!! GCAAGAAATGTATTTTTCAT+GGG + Chr1:39341300-39341319 MsG0180002504.01.T01:three_prime_UTR 25.0%
!! TAAATTTGTGTTTGCTAATC+AGG - Chr1:39340134-39340153 None:intergenic 25.0%
!! TATTATCTGTAAGTTAGCTT+AGG + Chr1:39340922-39340941 MsG0180002504.01.T01:three_prime_UTR 25.0%
!! TCCTGTCATAATTATAGTTT+TGG + Chr1:39340601-39340620 MsG0180002502.01.T01:intron 25.0%
!! TGCAAGAAATGTATTTTTCA+TGG + Chr1:39341299-39341318 MsG0180002504.01.T01:three_prime_UTR 25.0%
!! TTGTGAAAATGAAAGTTGAT+GGG + Chr1:39340457-39340476 MsG0180002502.01.T01:intron 25.0%
!!! ATATTTTACTTCTGGGAATT+TGG + Chr1:39341384-39341403 MsG0180002504.01.T01:three_prime_UTR 25.0%
!!! TTCCTTTTTAATTATCACCT+CGG - Chr1:39339459-39339478 None:intergenic 25.0%
ATTAATTAAGGTGGCACTAA+CGG - Chr1:39339648-39339667 None:intergenic 30.0%
CAGGGAAAATTCTGATAAAA+TGG + Chr1:39339082-39339101 MsG0180002502.01.T01:CDS 30.0%
CTTGATACTAACAACACTTT+AGG - Chr1:39340525-39340544 None:intergenic 30.0%
GATTATCAAAATCGGTTATC+TGG - Chr1:39341074-39341093 None:intergenic 30.0%
GGAAGGATATAAAACAGAAT+GGG - Chr1:39339848-39339867 None:intergenic 30.0%
GTTATTCAGGTATCTCAAAA+AGG - Chr1:39341364-39341383 None:intergenic 30.0%
GTTGTATTGAATCAAACACT+AGG + Chr1:39339540-39339559 MsG0180002502.01.T01:intron 30.0%
TCATGAATTGAAAGTTGAAG+AGG + Chr1:39341173-39341192 MsG0180002504.01.T01:three_prime_UTR 30.0%
TGAAAAATCATATCTGTCTC+GGG - Chr1:39341156-39341175 None:intergenic 30.0%
TGTATTGAATCAAACACTAG+GGG + Chr1:39339542-39339561 MsG0180002502.01.T01:intron 30.0%
TTCCGAGGTGATAATTAAAA+AGG + Chr1:39339454-39339473 MsG0180002502.01.T01:intron 30.0%
TTTATTCCCTTATCAATTGG+AGG - Chr1:39339958-39339977 None:intergenic 30.0%
! AAAGGAGATATTCTAAAGGA+TGG - Chr1:39339252-39339271 None:intergenic 30.0%
! AAGAGAGTACGATGTAAAAA+AGG - Chr1:39339270-39339289 None:intergenic 30.0%
! CATTTTATCAGAATTTTCCC+TGG - Chr1:39339084-39339103 None:intergenic 30.0%
! GTGAAAAGCAATAGTTTTTC+TGG - Chr1:39339162-39339181 None:intergenic 30.0%
! TTGCTGATTAATCAAATTCG+AGG - Chr1:39339045-39339064 None:intergenic 30.0%
! TTTCCTTTTAAATTGGGGAA+GGG - Chr1:39339680-39339699 None:intergenic 30.0%
! TTTGTAATTTGCCATGCTTT+GGG + Chr1:39339192-39339211 MsG0180002502.01.T01:intron 30.0%
!! ATTTGGTTTCTTTTTCTGAG+AGG - Chr1:39340757-39340776 None:intergenic 30.0%
!! CTCTTACTTTATCGATTTCA+GGG + Chr1:39340666-39340685 MsG0180002502.01.T01:intron 30.0%
!! GGCTTTGAAAGAATAATGTT+AGG - Chr1:39339887-39339906 None:intergenic 30.0%
!! TAGGATTTTCTTTATTTCCG+AGG + Chr1:39339439-39339458 MsG0180002502.01.T01:intron 30.0%
!! TCTCTTACTTTATCGATTTC+AGG + Chr1:39340665-39340684 MsG0180002502.01.T01:intron 30.0%
!! TTTGAATTCGTTTTTCCACA+TGG - Chr1:39339398-39339417 None:intergenic 30.0%
!!! ATGCTATTTTTGCTAAGTTG+AGG + Chr1:39340876-39340895 MsG0180002504.01.T01:three_prime_UTR 30.0%
!!! TTTTCTTTTAGGGTTACGTT+AGG + Chr1:39339339-39339358 MsG0180002502.01.T01:intron 30.0%
AAAGAATTCCTACAACCATG+TGG + Chr1:39339380-39339399 MsG0180002502.01.T01:intron 35.0%
AATTCCAAATCACTACCTTG+AGG - Chr1:39339601-39339620 None:intergenic 35.0%
ACAATTTATTTCAGGGTGGT+GGG + Chr1:39340153-39340172 MsG0180002502.01.T01:intron 35.0%
ATAAAATGGCTAGCAAACAG+AGG + Chr1:39339096-39339115 MsG0180002502.01.T01:CDS 35.0%
GAGGATCAATATGTTCTCTA+TGG - Chr1:39339908-39339927 None:intergenic 35.0%
GGGAAGGATATAAAACAGAA+TGG - Chr1:39339849-39339868 None:intergenic 35.0%
TACAATTTATTTCAGGGTGG+TGG + Chr1:39340152-39340171 MsG0180002502.01.T01:intron 35.0%
TAGCAAAAATAGCATGACAG+AGG - Chr1:39340871-39340890 None:intergenic 35.0%
TCATGAAGAAGATGATGAGT+TGG + Chr1:39339997-39340016 MsG0180002502.01.T01:CDS 35.0%
TGGAAACCTCCAATTGATAA+GGG + Chr1:39339949-39339968 MsG0180002502.01.T01:intron 35.0%
TTCAGCGTTCTTTCGTAAAA+CGG - Chr1:39340730-39340749 None:intergenic 35.0%
TTGAAAAATCTAGGGATACC+AGG - Chr1:39340354-39340373 None:intergenic 35.0%
TTGAAGAGGACTTGAAGATT+GGG + Chr1:39341187-39341206 MsG0180002504.01.T01:three_prime_UTR 35.0%
TTGTTAGTATCAAGCGTCAT+TGG + Chr1:39340531-39340550 MsG0180002502.01.T01:intron 35.0%
! ATGGCTTTTGTTGCAAATAC+TGG + Chr1:39340993-39341012 MsG0180002504.01.T01:three_prime_UTR 35.0%
! ATTTTACTCCCATATCCAAG+AGG + Chr1:39340781-39340800 MsG0180002502.01.T01:CDS 35.0%
! CATTTTACAACCATGTCTGA+GGG - Chr1:39339624-39339643 None:intergenic 35.0%
! CTTTCCTTTTAAATTGGGGA+AGG - Chr1:39339681-39339700 None:intergenic 35.0%
! CTTTGTAATTTGCCATGCTT+TGG + Chr1:39339191-39339210 MsG0180002502.01.T01:intron 35.0%
! TGGCTTTTGTTGCAAATACT+GGG + Chr1:39340994-39341013 MsG0180002504.01.T01:three_prime_UTR 35.0%
! TTCCTTTTAAATTGGGGAAG+GGG - Chr1:39339679-39339698 None:intergenic 35.0%
! TTTTACTCCCATATCCAAGA+GGG + Chr1:39340782-39340801 MsG0180002502.01.T01:CDS 35.0%
!! AGTTTAGTCTTGTAACCTCA+AGG + Chr1:39339583-39339602 MsG0180002502.01.T01:intron 35.0%
!! GATCCTCATTTTTCTATCCA+GGG + Chr1:39339921-39339940 MsG0180002502.01.T01:intron 35.0%
!! TGAAAGTTGATGGGTAGAAT+TGG + Chr1:39340466-39340485 MsG0180002502.01.T01:intron 35.0%
!! TGATCCTCATTTTTCTATCC+AGG + Chr1:39339920-39339939 MsG0180002502.01.T01:intron 35.0%
!!! TTACCCTGTTTTTTCACAAG+AGG + Chr1:39339775-39339794 MsG0180002502.01.T01:intron 35.0%
AAAATCTAGGGATACCAGGT+TGG - Chr1:39340350-39340369 None:intergenic 40.0%
ACAGCCTCTTGTGAAAAAAC+AGG - Chr1:39339782-39339801 None:intergenic 40.0%
CAGCCTCTTGTGAAAAAACA+GGG - Chr1:39339781-39339800 None:intergenic 40.0%
CCTCAGACATGGTTGTAAAA+TGG + Chr1:39339622-39339641 MsG0180002502.01.T01:intron 40.0%
CTAAAAGAATGCATCCAACC+TGG + Chr1:39340333-39340352 MsG0180002502.01.T01:intron 40.0%
CTGGAAACCTCCAATTGATA+AGG + Chr1:39339948-39339967 MsG0180002502.01.T01:intron 40.0%
GAGGACAAATACTGACATTG+TGG - Chr1:39339026-39339045 None:intergenic 40.0%
GTAACCTCAAGGTAGTGATT+TGG + Chr1:39339594-39339613 MsG0180002502.01.T01:intron 40.0%
GTTGAAGAGGACTTGAAGAT+TGG + Chr1:39341186-39341205 MsG0180002504.01.T01:three_prime_UTR 40.0%
TAAGGTCGTTGTTGAAACAG+AGG - Chr1:39340693-39340712 None:intergenic 40.0%
TAGCCCTGGATAGAAAAATG+AGG - Chr1:39339927-39339946 None:intergenic 40.0%
TAGGCAAGCTTTGCATCAAA+TGG - Chr1:39340506-39340525 None:intergenic 40.0%
TTAATGCACAACAGCAAAGC+TGG - Chr1:39340967-39340986 None:intergenic 40.0%
TTCCCCTTCCCCAATTTAAA+AGG + Chr1:39339674-39339693 MsG0180002502.01.T01:intron 40.0%
TTTACTCCCATATCCAAGAG+GGG + Chr1:39340783-39340802 MsG0180002502.01.T01:CDS 40.0%
! ACACGTTTGTGTTGATACGA+TGG - Chr1:39340845-39340864 None:intergenic 40.0%
! ACGGGGCTTTCCTTTTAAAT+TGG - Chr1:39339687-39339706 None:intergenic 40.0%
! AGATGATGAGTTGGATCCTA+TGG + Chr1:39340006-39340025 MsG0180002502.01.T01:CDS 40.0%
! ATTTGGAATTCCCTCAGACA+TGG + Chr1:39339611-39339630 MsG0180002502.01.T01:intron 40.0%
! CCATTTTACAACCATGTCTG+AGG - Chr1:39339625-39339644 None:intergenic 40.0%
! CGGGGCTTTCCTTTTAAATT+GGG - Chr1:39339686-39339705 None:intergenic 40.0%
! GAAGCATTCAGACAAGTGAT+GGG + Chr1:39341096-39341115 MsG0180002504.01.T01:three_prime_UTR 40.0%
! GGCTTTTGTTGCAAATACTG+GGG + Chr1:39340995-39341014 MsG0180002504.01.T01:three_prime_UTR 40.0%
! GGGGCTTTCCTTTTAAATTG+GGG - Chr1:39339685-39339704 None:intergenic 40.0%
! TGAAGCATTCAGACAAGTGA+TGG + Chr1:39341095-39341114 MsG0180002504.01.T01:three_prime_UTR 40.0%
!! AAGTTGATGGGTAGAATTGG+TGG + Chr1:39340469-39340488 MsG0180002502.01.T01:intron 40.0%
!! TCGTTTTTCCACATGGTTGT+AGG - Chr1:39339391-39339410 None:intergenic 40.0%
ATAACTTCTGTCCACTCGCT+TGG - Chr1:39341044-39341063 None:intergenic 45.0%
ATCCTTCCCCGCATTACTAA+CGG + Chr1:39339860-39339879 MsG0180002502.01.T01:intron 45.0%
ATGGCTAGCAAACAGAGGTA+TGG + Chr1:39339101-39339120 MsG0180002502.01.T01:intron 45.0%
GACCTTTCTCAAGCTCAACA+TGG + Chr1:39340633-39340652 MsG0180002502.01.T01:intron 45.0%
GTTCAAGTCTCGTGACTGAA+AGG - Chr1:39339826-39339845 None:intergenic 45.0%
TGCCATGTTGAGCTTGAGAA+AGG - Chr1:39340638-39340657 None:intergenic 45.0%
TGTTAGGCCCGTTAGTAATG+CGG - Chr1:39339871-39339890 None:intergenic 45.0%
TTCTTTCGTAAAACGGCTCC+AGG - Chr1:39340723-39340742 None:intergenic 45.0%
! TCAGAATTTTCCCTGGGATG+TGG - Chr1:39339077-39339096 None:intergenic 45.0%
! TGACTGGTGTTCAGAAGCAT+AGG + Chr1:39340560-39340579 MsG0180002502.01.T01:intron 45.0%
! TTTCACAAGAGGCTGTTTCC+AGG + Chr1:39339786-39339805 MsG0180002502.01.T01:intron 45.0%
!! TTTTTCTATCCAGGGCTAGC+TGG + Chr1:39339929-39339948 MsG0180002502.01.T01:intron 45.0%
!! AAAAAAAAAAAAAAAAACTT+AGG - Chr1:39341340-39341359 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAACTTA+GGG - Chr1:39341339-39341358 None:intergenic 5.0%
!! AAAATAAAATAAAATGAAAA+AGG + Chr1:39339486-39339505 MsG0180002502.01.T01:intron 5.0%
AAGGTCACGAGTTCAAGTCC+TGG - Chr1:39339807-39339826 None:intergenic 50.0%
AGAGAGTCATGCCCAAAGCA+TGG - Chr1:39339206-39339225 None:intergenic 50.0%
ATGCGGGATCTTTAGTGCAC+GGG - Chr1:39339705-39339724 None:intergenic 50.0%
CAACGACCTTATCCATCACC+TGG + Chr1:39340702-39340721 MsG0180002502.01.T01:CDS 50.0%
CAATCCTGTAACCAAGCGAG+TGG + Chr1:39341030-39341049 MsG0180002504.01.T01:three_prime_UTR 50.0%
CATGCGGGATCTTTAGTGCA+CGG - Chr1:39339706-39339725 None:intergenic 50.0%
GAGCATCTGAATAGGAGCTG+GGG - Chr1:39340033-39340052 None:intergenic 50.0%
GTTAGGCCCGTTAGTAATGC+GGG - Chr1:39339870-39339889 None:intergenic 50.0%
TCCTATTCAGATGCTCCTCG+CGG + Chr1:39340037-39340056 MsG0180002502.01.T01:CDS 50.0%
TCCTTCCCCGCATTACTAAC+GGG + Chr1:39339861-39339880 MsG0180002502.01.T01:intron 50.0%
TTAGGCCCGTTAGTAATGCG+GGG - Chr1:39339869-39339888 None:intergenic 50.0%
! GCGTCATTGGCTGTTATGAC+TGG + Chr1:39340544-39340563 MsG0180002502.01.T01:intron 50.0%
! GGAGCATCTGAATAGGAGCT+GGG - Chr1:39340034-39340053 None:intergenic 50.0%
!! AGGAGCATCTGAATAGGAGC+TGG - Chr1:39340035-39340054 None:intergenic 50.0%
AAAGCAGTGCTCCACATCCC+AGG + Chr1:39339063-39339082 MsG0180002502.01.T01:CDS 55.0%
AAGCAGTGCTCCACATCCCA+GGG + Chr1:39339064-39339083 MsG0180002502.01.T01:CDS 55.0%
ACTAAAGATCCCGCATGCGC+AGG + Chr1:39339709-39339728 MsG0180002502.01.T01:intron 55.0%
CCATCGCCCCTCTTGGATAT+GGG - Chr1:39340792-39340811 None:intergenic 55.0%
CGTAAAACGGCTCCAGGTGA+TGG - Chr1:39340717-39340736 None:intergenic 55.0%
CTAAAGATCCCGCATGCGCA+GGG + Chr1:39339710-39339729 MsG0180002502.01.T01:intron 55.0%
CTGTCCACTCGCTTGGTTAC+AGG - Chr1:39341037-39341056 None:intergenic 55.0%
GAATAGGAGCTGGGGTCCAT+AGG - Chr1:39340025-39340044 None:intergenic 55.0%
TATCTGTCTCGGGTCAGCTC+AGG - Chr1:39341146-39341165 None:intergenic 55.0%
TATTCAGATGCTCCTCGCGG+TGG + Chr1:39340040-39340059 MsG0180002502.01.T01:CDS 55.0%
TGCGGGATCTTTAGTGCACG+GGG - Chr1:39339704-39339723 None:intergenic 55.0%
TGGGCTTGGCGATGCAGATT+AGG + Chr1:39340818-39340837 MsG0180002502.01.T01:CDS 55.0%
! GTCTGAAAGGTGTGCAGCCA+CGG + Chr1:39340175-39340194 MsG0180002502.01.T01:CDS 55.0%
! TCTGAAAGGTGTGCAGCCAC+GGG + Chr1:39340176-39340195 MsG0180002502.01.T01:CDS 55.0%
!! ACCGCGAGGAGCATCTGAAT+AGG - Chr1:39340041-39340060 None:intergenic 55.0%
!! ACGGCTCCAGGTGATGGATA+AGG - Chr1:39340711-39340730 None:intergenic 55.0%
!! TTCAGGGTGGTGGGTCTGAA+AGG + Chr1:39340162-39340181 MsG0180002502.01.T01:intron 55.0%
CATGCGCAGGGTTCAGGAAG+GGG + Chr1:39339722-39339741 MsG0180002502.01.T01:intron 60.0%
CCCATATCCAAGAGGGGCGA+TGG + Chr1:39340789-39340808 MsG0180002502.01.T01:CDS 60.0%
CTTCCTGAACCCTGCGCATG+CGG - Chr1:39339722-39339741 None:intergenic 60.0%
GCATGCGCAGGGTTCAGGAA+GGG + Chr1:39339721-39339740 MsG0180002502.01.T01:intron 60.0%
GCCATCGCCCCTCTTGGATA+TGG - Chr1:39340793-39340812 None:intergenic 60.0%
GCCCGTTAGTAATGCGGGGA+AGG - Chr1:39339865-39339884 None:intergenic 60.0%
TGGAGGTTTCCAGCTAGCCC+TGG - Chr1:39339941-39339960 None:intergenic 60.0%
TTCCTGAACCCTGCGCATGC+GGG - Chr1:39339721-39339740 None:intergenic 60.0%
!! CACTAGGGGTGCTAGCTCAC+TGG + Chr1:39339556-39339575 MsG0180002502.01.T01:intron 60.0%
AAGAGGGGCGATGGCAGCGA+TGG + Chr1:39340798-39340817 MsG0180002502.01.T01:CDS 65.0%
AGAGGGGCGATGGCAGCGAT+GGG + Chr1:39340799-39340818 MsG0180002502.01.T01:CDS 65.0%
ATCCCGCATGCGCAGGGTTC+AGG + Chr1:39339716-39339735 MsG0180002502.01.T01:intron 65.0%
ATCGCTGCCATCGCCCCTCT+TGG - Chr1:39340799-39340818 None:intergenic 65.0%
CATCCATACCAGCCACCGCG+AGG - Chr1:39340055-39340074 None:intergenic 65.0%
CGCATGCGCAGGGTTCAGGA+AGG + Chr1:39339720-39339739 MsG0180002502.01.T01:intron 65.0%
GCTGTTGTGTCTGCTGCCCG+TGG - Chr1:39340195-39340214 None:intergenic 65.0%
CAGATGCTCCTCGCGGTGGC+TGG + Chr1:39340044-39340063 MsG0180002502.01.T01:CDS 70.0%
GCTCCTCGCGGTGGCTGGTA+TGG + Chr1:39340049-39340068 MsG0180002502.01.T01:intron 70.0%
! GGCGATGGCAGCGATGGGCT+TGG + Chr1:39340804-39340823 MsG0180002502.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 39338996 39341416 39338996 ID=MsG0180002504.01;Name=MsG0180002504.01
Chr1 mRNA 39338996 39341416 39338996 ID=MsG0180002504.01.T01;Parent=MsG0180002504.01;Name=MsG0180002504.01.T01;_AED=0.46;_eAED=0.47;_QI=0|0.5|0.66|1|0|0|3|577|118
Chr1 exon 39338996 39339147 39338996 ID=MsG0180002504.01.T01:exon:36833;Parent=MsG0180002504.01.T01
Chr1 exon 39340167 39340218 39340167 ID=MsG0180002504.01.T01:exon:36834;Parent=MsG0180002504.01.T01
Chr1 exon 39340687 39341416 39340687 ID=MsG0180002504.01.T01:exon:36835;Parent=MsG0180002504.01.T01
Chr1 CDS 39338996 39339147 39338996 ID=MsG0180002504.01.T01:cds;Parent=MsG0180002504.01.T01
Chr1 CDS 39340167 39340218 39340167 ID=MsG0180002504.01.T01:cds;Parent=MsG0180002504.01.T01
Chr1 CDS 39340687 39340839 39340687 ID=MsG0180002504.01.T01:cds;Parent=MsG0180002504.01.T01
Chr1 three_prime_UTR 39340840 39341416 39340840 ID=MsG0180002504.01.T01:three_prime_utr;Parent=MsG0180002504.01.T01
Gene Sequence

>MsG0180002504.01.T01

ATGAACAAATGCAGAGTTCTCAATCTTCCACAATGTCAGTATTTGTCCTCGAATTTGATTAATCAGCAAAGCAGTGCTCCACATCCCAGGGAAAATTCTGATAAAATGGCTAGCAAACAGAGGTATGGTTTTTGTATGAAATACGCATTTCTGGTGGTGGGTCTGAAAGGTGTGCAGCCACGGGCAGCAGACACAACAGCAACCGGTCCTCTGTTTCAACAACGACCTTATCCATCACCTGGAGCCGTTTTACGAAAGAACGCTGAAGTTGCCTCTCAGAAAAAGAAACCAAATTCAAATTTTACTCCCATATCCAAGAGGGGCGATGGCAGCGATGGGCTTGGCGATGCAGATTAG
Protein sequence

>MsG0180002504.01.T01

MNKCRVLNLPQCQYLSSNLINQQSSAPHPRENSDKMASKQRYGFCMKYAFLVVGLKGVQPRAADTTATGPLFQQRPYPSPGAVLRKNAEVASQKKKPNSNFTPISKRGDGSDGLGDAD*