Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003431.01.T01 | XP_003590399.1 | 96.996 | 233 | 6 | 1 | 1 | 233 | 1 | 232 | 4.92E-167 | 470 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003431.01.T01 | Q9LZR0 | 50.769 | 195 | 78 | 6 | 1 | 178 | 1 | 194 | 3.94E-48 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003431.01.T01 | G7I9C4 | 96.996 | 233 | 6 | 1 | 1 | 233 | 1 | 232 | 2.35e-167 | 470 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180003431.01.T01 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048357.01 | MsG0180003431.01 | 0.830629 | 2.637689e-55 | 2.794489e-52 |
| MsG0180001200.01 | MsG0180003431.01 | 0.845242 | 4.588386e-59 | 7.598605e-56 |
| MsG0180003431.01 | MsG0280007305.01 | 0.828198 | 1.027177e-54 | 1.013897e-51 |
| MsG0180003431.01 | MsG0380016465.01 | 0.815324 | 9.800761e-52 | 6.735993e-49 |
| MsG0180003431.01 | MsG0580024094.01 | 0.801572 | 8.453711e-49 | 4.050778e-46 |
| MsG0180003431.01 | MsG0580029405.01 | 0.850015 | 2.231021e-60 | 4.310180e-57 |
| MsG0180003431.01 | MsG0580029417.01 | 0.803558 | 3.292605e-49 | 1.659824e-46 |
| MsG0180003431.01 | MsG0580029418.01 | 0.815049 | 1.127832e-51 | 7.693305e-49 |
| MsG0180003431.01 | MsG0680031707.01 | 0.846105 | 2.677166e-59 | 4.558302e-56 |
| MsG0180003431.01 | MsG0680033143.01 | 0.829489 | 5.003196e-55 | 5.128170e-52 |
| MsG0180003431.01 | MsG0680035683.01 | 0.801423 | 9.067545e-49 | 4.328678e-46 |
| MsG0180003431.01 | MsG0780040966.01 | 0.817088 | 3.953296e-52 | 2.851505e-49 |
| MsG0180003431.01 | MsG0880045585.01 | 0.824642 | 7.226758e-54 | 6.439530e-51 |
| MsG0180003431.01 | MsG0880045586.01 | 0.809295 | 2.030630e-50 | 1.187724e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003431.01.T01 | MTR_1g061660 | 96.996 | 233 | 6 | 1 | 1 | 233 | 1 | 232 | 5.95e-171 | 470 |
| MsG0180003431.01.T01 | MTR_7g103340 | 56.327 | 245 | 82 | 11 | 1 | 233 | 1 | 232 | 4.56e-77 | 232 |
| MsG0180003431.01.T01 | MTR_6g007647 | 56.863 | 102 | 37 | 1 | 59 | 153 | 32 | 133 | 2.95e-30 | 113 |
| MsG0180003431.01.T01 | MTR_6g007647 | 56.863 | 102 | 37 | 1 | 59 | 153 | 66 | 167 | 4.54e-30 | 113 |
| MsG0180003431.01.T01 | MTR_4g107650 | 50.420 | 119 | 52 | 1 | 49 | 160 | 84 | 202 | 1.71e-29 | 112 |
| MsG0180003431.01.T01 | MTR_6g011610 | 55.670 | 97 | 43 | 0 | 54 | 150 | 90 | 186 | 4.29e-28 | 108 |
| MsG0180003431.01.T01 | MTR_6g011610 | 55.670 | 97 | 43 | 0 | 54 | 150 | 71 | 167 | 4.47e-28 | 107 |
| MsG0180003431.01.T01 | MTR_8g468210 | 55.670 | 97 | 36 | 1 | 57 | 146 | 74 | 170 | 8.69e-28 | 107 |
| MsG0180003431.01.T01 | MTR_3g086790 | 38.202 | 178 | 88 | 5 | 55 | 221 | 55 | 221 | 4.75e-27 | 105 |
| MsG0180003431.01.T01 | MTR_8g089895 | 40.645 | 155 | 79 | 4 | 48 | 189 | 39 | 193 | 2.26e-26 | 104 |
| MsG0180003431.01.T01 | MTR_5g038280 | 54.128 | 109 | 39 | 2 | 58 | 155 | 85 | 193 | 3.09e-26 | 103 |
| MsG0180003431.01.T01 | MTR_5g039000 | 56.180 | 89 | 39 | 0 | 59 | 147 | 76 | 164 | 3.62e-26 | 103 |
| MsG0180003431.01.T01 | MTR_3g080100 | 41.722 | 151 | 79 | 3 | 59 | 207 | 19 | 162 | 2.65e-25 | 99.4 |
| MsG0180003431.01.T01 | MTR_3g092150 | 49.038 | 104 | 45 | 2 | 62 | 158 | 40 | 142 | 3.58e-25 | 99.8 |
| MsG0180003431.01.T01 | MTR_8g469430 | 53.608 | 97 | 38 | 1 | 60 | 149 | 89 | 185 | 4.11e-25 | 100 |
| MsG0180003431.01.T01 | MTR_3g080100 | 41.722 | 151 | 79 | 3 | 59 | 207 | 58 | 201 | 5.75e-25 | 99.4 |
| MsG0180003431.01.T01 | MTR_7g010020 | 54.639 | 97 | 37 | 1 | 58 | 147 | 78 | 174 | 3.42e-24 | 97.4 |
| MsG0180003431.01.T01 | MTR_8g026960 | 42.308 | 130 | 56 | 3 | 64 | 183 | 38 | 158 | 5.41e-24 | 96.3 |
| MsG0180003431.01.T01 | MTR_5g019680 | 44.340 | 106 | 59 | 0 | 55 | 160 | 48 | 153 | 1.09e-20 | 86.7 |
| MsG0180003431.01.T01 | MTR_4g097600 | 48.315 | 89 | 46 | 0 | 60 | 148 | 127 | 215 | 2.50e-18 | 81.6 |
| MsG0180003431.01.T01 | MTR_7g093430 | 45.161 | 93 | 51 | 0 | 60 | 152 | 160 | 252 | 3.27e-18 | 82.0 |
| MsG0180003431.01.T01 | MTR_5g019650 | 42.478 | 113 | 58 | 1 | 55 | 160 | 48 | 160 | 3.40e-18 | 80.5 |
| MsG0180003431.01.T01 | MTR_4g100550 | 38.971 | 136 | 66 | 3 | 60 | 187 | 120 | 246 | 3.54e-18 | 81.6 |
| MsG0180003431.01.T01 | MTR_1g017090 | 43.119 | 109 | 55 | 2 | 47 | 148 | 110 | 218 | 1.80e-17 | 79.7 |
| MsG0180003431.01.T01 | MTR_1g054285 | 44.944 | 89 | 49 | 0 | 60 | 148 | 154 | 242 | 2.49e-17 | 79.3 |
| MsG0180003431.01.T01 | MTR_5g013010 | 47.191 | 89 | 47 | 0 | 60 | 148 | 136 | 224 | 8.96e-17 | 77.8 |
| MsG0180003431.01.T01 | MTR_8g006705 | 46.067 | 89 | 48 | 0 | 60 | 148 | 146 | 234 | 1.23e-16 | 77.8 |
| MsG0180003431.01.T01 | MTR_2g061030 | 43.820 | 89 | 50 | 0 | 60 | 148 | 200 | 288 | 1.70e-16 | 77.4 |
| MsG0180003431.01.T01 | MTR_4g084750 | 44.681 | 94 | 52 | 0 | 55 | 148 | 60 | 153 | 2.46e-16 | 75.1 |
| MsG0180003431.01.T01 | MTR_5g014890 | 43.820 | 89 | 50 | 0 | 60 | 148 | 123 | 211 | 2.87e-15 | 73.2 |
| MsG0180003431.01.T01 | MTR_4g126900 | 44.186 | 86 | 48 | 0 | 63 | 148 | 91 | 176 | 3.63e-15 | 72.4 |
| MsG0180003431.01.T01 | MTR_3g103590 | 43.820 | 89 | 50 | 0 | 60 | 148 | 145 | 233 | 1.63e-14 | 71.6 |
| MsG0180003431.01.T01 | MTR_2g038625 | 42.697 | 89 | 51 | 0 | 60 | 148 | 82 | 170 | 5.15e-13 | 66.2 |
| MsG0180003431.01.T01 | MTR_2g038580 | 42.697 | 89 | 51 | 0 | 60 | 148 | 82 | 170 | 5.15e-13 | 66.2 |
| MsG0180003431.01.T01 | MTR_5g013010 | 55.769 | 52 | 23 | 0 | 60 | 111 | 136 | 187 | 1.67e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003431.01.T01 | AT5G03790 | 50.769 | 195 | 78 | 6 | 1 | 178 | 1 | 194 | 4.02e-49 | 161 |
| MsG0180003431.01.T01 | AT5G03790 | 53.704 | 162 | 58 | 5 | 1 | 145 | 1 | 162 | 1.27e-42 | 143 |
| MsG0180003431.01.T01 | AT2G36610 | 49.162 | 179 | 65 | 7 | 7 | 162 | 5 | 180 | 1.79e-41 | 140 |
| MsG0180003431.01.T01 | AT4G40060 | 41.875 | 160 | 82 | 3 | 27 | 177 | 28 | 185 | 1.08e-31 | 117 |
| MsG0180003431.01.T01 | AT1G69780 | 44.755 | 143 | 66 | 1 | 57 | 199 | 82 | 211 | 1.27e-30 | 115 |
| MsG0180003431.01.T01 | AT5G15150 | 62.366 | 93 | 35 | 0 | 57 | 149 | 112 | 204 | 1.01e-29 | 113 |
| MsG0180003431.01.T01 | AT2G22430 | 54.455 | 101 | 39 | 1 | 56 | 149 | 58 | 158 | 1.02e-28 | 110 |
| MsG0180003431.01.T01 | AT5G65310 | 41.667 | 144 | 72 | 4 | 12 | 151 | 28 | 163 | 5.41e-28 | 108 |
| MsG0180003431.01.T01 | AT5G65310 | 41.667 | 144 | 72 | 4 | 12 | 151 | 10 | 145 | 5.56e-28 | 108 |
| MsG0180003431.01.T01 | AT3G01220 | 53.211 | 109 | 44 | 1 | 57 | 158 | 84 | 192 | 1.88e-27 | 106 |
| MsG0180003431.01.T01 | AT3G01470 | 38.562 | 153 | 84 | 2 | 57 | 202 | 65 | 214 | 4.13e-27 | 105 |
| MsG0180003431.01.T01 | AT2G46680 | 49.541 | 109 | 48 | 1 | 45 | 146 | 17 | 125 | 5.15e-27 | 104 |
| MsG0180003431.01.T01 | AT2G46680 | 47.826 | 115 | 53 | 1 | 45 | 152 | 17 | 131 | 3.20e-26 | 102 |
| MsG0180003431.01.T01 | AT3G61890 | 38.650 | 163 | 71 | 3 | 63 | 214 | 33 | 177 | 3.71e-26 | 102 |
| MsG0180003431.01.T01 | AT1G26960 | 42.958 | 142 | 60 | 3 | 57 | 193 | 68 | 193 | 4.09e-25 | 99.8 |
| MsG0180003431.01.T01 | AT2G18550 | 40.476 | 126 | 71 | 1 | 55 | 176 | 56 | 181 | 1.40e-24 | 97.4 |
| MsG0180003431.01.T01 | AT4G36740 | 50.526 | 95 | 47 | 0 | 55 | 149 | 50 | 144 | 3.20e-24 | 96.3 |
| MsG0180003431.01.T01 | AT4G36740 | 50.526 | 95 | 47 | 0 | 55 | 149 | 51 | 145 | 3.34e-24 | 96.3 |
| MsG0180003431.01.T01 | AT1G27045 | 49.020 | 102 | 45 | 1 | 60 | 154 | 25 | 126 | 1.69e-22 | 90.9 |
| MsG0180003431.01.T01 | AT1G27045 | 49.020 | 102 | 45 | 1 | 60 | 154 | 25 | 126 | 1.69e-22 | 90.9 |
| MsG0180003431.01.T01 | AT1G27045 | 49.020 | 102 | 45 | 1 | 60 | 154 | 68 | 169 | 1.78e-22 | 92.0 |
| MsG0180003431.01.T01 | AT1G27045 | 49.020 | 102 | 45 | 1 | 60 | 154 | 17 | 118 | 2.00e-22 | 90.5 |
| MsG0180003431.01.T01 | AT5G66700 | 48.913 | 92 | 47 | 0 | 60 | 151 | 71 | 162 | 1.20e-21 | 89.7 |
| MsG0180003431.01.T01 | AT1G27045 | 43.636 | 110 | 58 | 1 | 60 | 169 | 68 | 173 | 8.30e-21 | 88.2 |
| MsG0180003431.01.T01 | AT5G53980 | 44.211 | 95 | 53 | 0 | 60 | 154 | 11 | 105 | 3.09e-17 | 76.3 |
| MsG0180003431.01.T01 | AT4G16780 | 43.617 | 94 | 53 | 0 | 55 | 148 | 124 | 217 | 4.53e-17 | 78.6 |
| MsG0180003431.01.T01 | AT5G06710 | 44.944 | 89 | 49 | 0 | 60 | 148 | 190 | 278 | 1.35e-16 | 77.8 |
| MsG0180003431.01.T01 | AT2G01430 | 48.315 | 89 | 46 | 0 | 60 | 148 | 139 | 227 | 2.68e-16 | 76.3 |
| MsG0180003431.01.T01 | AT4G17460 | 41.489 | 94 | 55 | 0 | 55 | 148 | 130 | 223 | 3.29e-16 | 76.3 |
| MsG0180003431.01.T01 | AT3G60390 | 46.067 | 89 | 48 | 0 | 60 | 148 | 162 | 250 | 3.38e-16 | 76.6 |
| MsG0180003431.01.T01 | AT2G22800 | 42.553 | 94 | 54 | 0 | 55 | 148 | 108 | 201 | 9.01e-16 | 74.7 |
| MsG0180003431.01.T01 | AT5G47370 | 31.973 | 147 | 91 | 2 | 11 | 148 | 72 | 218 | 1.52e-15 | 74.3 |
| MsG0180003431.01.T01 | AT4G37790 | 42.553 | 94 | 54 | 0 | 55 | 148 | 121 | 214 | 1.59e-15 | 74.3 |
| MsG0180003431.01.T01 | AT2G44910 | 42.697 | 89 | 51 | 0 | 60 | 148 | 163 | 251 | 3.88e-15 | 73.6 |
| MsG0180003431.01.T01 | AT1G70920 | 41.489 | 94 | 55 | 0 | 55 | 148 | 34 | 127 | 2.12e-12 | 63.9 |
| MsG0180003431.01.T01 | AT1G70920 | 41.489 | 94 | 55 | 0 | 55 | 148 | 64 | 157 | 2.33e-12 | 64.3 |
| MsG0180003431.01.T01 | AT5G06710 | 53.846 | 52 | 24 | 0 | 60 | 111 | 190 | 241 | 9.89e-12 | 63.5 |
| MsG0180003431.01.T01 | AT2G01430 | 56.604 | 53 | 23 | 0 | 60 | 112 | 139 | 191 | 2.09e-11 | 61.6 |
Find 59 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACCTAGCACGCCTATTT+TGG | 0.156053 | 1:-62219717 | None:intergenic |
| TTGCTATTTGGTTCCAAAAT+AGG | 0.158232 | 1:+62219704 | MsG0180003431.01.T01:CDS |
| ATTACTTAATAATATAATTA+AGG | 0.184204 | 1:-62221335 | None:intergenic |
| AGCCTCGTCAAATTGCTATT+TGG | 0.235729 | 1:+62219692 | MsG0180003431.01.T01:CDS |
| ATTATTGCTGGTAAATAAAA+TGG | 0.257892 | 1:+62221488 | MsG0180003431.01.T01:three_prime_UTR |
| CCTTGGACACAACCTCAAAT+TGG | 0.274196 | 1:-62219780 | None:intergenic |
| ATGAAGCTTTCCAAGGAGTT+AGG | 0.302805 | 1:+62219664 | MsG0180003431.01.T01:CDS |
| TAGTTGATGGAAAAGCATTT+AGG | 0.316089 | 1:+62221442 | MsG0180003431.01.T01:three_prime_UTR |
| AAACTGTTGTTTCAATTTAG+AGG | 0.320208 | 1:+62221244 | MsG0180003431.01.T01:CDS |
| CTTTCCCTTCACCTCTCTGT+TGG | 0.348637 | 1:-62221192 | None:intergenic |
| CGATACAATGTTCCCAGAAA+TGG | 0.350198 | 1:+62219525 | MsG0180003431.01.T01:CDS |
| GAAAGCTTCATCTTCCTTTG+AGG | 0.362313 | 1:-62219652 | None:intergenic |
| AATTAAGGGTGATAGTTATA+AGG | 0.365223 | 1:-62221320 | None:intergenic |
| TTACTTAATAATATAATTAA+GGG | 0.374470 | 1:-62221334 | None:intergenic |
| AAAGCTTCATCTTCCTTTGA+GGG | 0.383872 | 1:-62219651 | None:intergenic |
| GCAGGCCAGTAGGGCAATAG+TGG | 0.385106 | 1:-62221290 | None:intergenic |
| GTGAAACAGATAGATCATTA+TGG | 0.388863 | 1:+62219036 | MsG0180003431.01.T01:exon |
| GGAGTAGGATAAATTATTGC+TGG | 0.401926 | 1:+62221476 | MsG0180003431.01.T01:three_prime_UTR |
| TTAGAATCGATAATAGTTGA+TGG | 0.402549 | 1:+62221429 | MsG0180003431.01.T01:three_prime_UTR |
| TGGTAAATAAAATGGCTGTC+AGG | 0.433836 | 1:+62221496 | MsG0180003431.01.T01:three_prime_UTR |
| GTAGTTGTAGAGGAAGCTTA+AGG | 0.434188 | 1:-62219104 | None:intergenic |
| AGCATTTAGGAACTGACATT+AGG | 0.440329 | 1:+62221455 | MsG0180003431.01.T01:three_prime_UTR |
| GTGTTCCACTATTGCCCTAC+TGG | 0.465761 | 1:+62221285 | MsG0180003431.01.T01:CDS |
| TGAAGCTTTCCAAGGAGTTA+GGG | 0.476348 | 1:+62219665 | MsG0180003431.01.T01:CDS |
| CCAATTTGAGGTTGTGTCCA+AGG | 0.478928 | 1:+62219780 | MsG0180003431.01.T01:CDS |
| TTCACTTAGACACCAATTTG+AGG | 0.493024 | 1:+62219768 | MsG0180003431.01.T01:CDS |
| ATACAAGTGTTCAAGTTGCT+TGG | 0.493063 | 1:-62219743 | None:intergenic |
| GGTACAGAAGCAGGCCAGTA+GGG | 0.495028 | 1:-62221299 | None:intergenic |
| AGGCTGTAGCCCTAACTCCT+TGG | 0.496406 | 1:-62219674 | None:intergenic |
| TGTTCAGGTTGTGAAGTTGA+AGG | 0.499837 | 1:+62221055 | MsG0180003431.01.T01:intron |
| GTGTGTTTGTTAAGGAATGA+TGG | 0.514828 | 1:+62219480 | MsG0180003431.01.T01:intron |
| GGTTCCAAAATAGGCGTGCT+AGG | 0.516451 | 1:+62219713 | MsG0180003431.01.T01:CDS |
| TACAACCAATGCTCATATCA+AGG | 0.516637 | 1:+62219124 | MsG0180003431.01.T01:CDS |
| TAGTTATAAGGTACAGAAGC+AGG | 0.517499 | 1:-62221308 | None:intergenic |
| CAACAGTTGAACATTGATGA+AGG | 0.518077 | 1:+62221221 | MsG0180003431.01.T01:CDS |
| AAAACAGCAGCTTCAGGATG+AGG | 0.518698 | 1:+62219804 | MsG0180003431.01.T01:CDS |
| AGCATTGGTTGTAGTTGTAG+AGG | 0.525273 | 1:-62219114 | None:intergenic |
| AACTCTTGTGGTAGAATGCA+AGG | 0.527714 | 1:+62221098 | MsG0180003431.01.T01:CDS |
| GAGTGAACAGATGGAATCAC+TGG | 0.535577 | 1:+62219597 | MsG0180003431.01.T01:CDS |
| CATTTCTGGGAACATTGTAT+CGG | 0.535904 | 1:-62219524 | None:intergenic |
| AGGTACAGAAGCAGGCCAGT+AGG | 0.540474 | 1:-62221300 | None:intergenic |
| GCGATTAACGAGTGAACAGA+TGG | 0.542500 | 1:+62219588 | MsG0180003431.01.T01:CDS |
| TAGATCATTATGGAATGGAA+TGG | 0.547700 | 1:+62219046 | MsG0180003431.01.T01:exon |
| TGGAAGTGAAACAACAAGAC+TGG | 0.554952 | 1:+62219500 | MsG0180003431.01.T01:CDS |
| CTTAAGGAAGACTCTGGTTG+AGG | 0.556116 | 1:-62219088 | None:intergenic |
| TTGCTCCAACAGAGAGGTGA+AGG | 0.556685 | 1:+62221187 | MsG0180003431.01.T01:CDS |
| AGATCAAACTAGACCCTCAA+AGG | 0.558248 | 1:+62219638 | MsG0180003431.01.T01:CDS |
| ACAGATAGATCATTATGGAA+TGG | 0.566319 | 1:+62219041 | MsG0180003431.01.T01:exon |
| AACAGTAGAAAGCACATCAG+AGG | 0.578567 | 1:+62221154 | MsG0180003431.01.T01:CDS |
| TAGGAACTGACATTAGGAGT+AGG | 0.594900 | 1:+62221461 | MsG0180003431.01.T01:three_prime_UTR |
| AAAGAACAAGGTAACTCTTG+TGG | 0.599344 | 1:+62221086 | MsG0180003431.01.T01:CDS |
| AGGAAGCTTAAGGAAGACTC+TGG | 0.609695 | 1:-62219094 | None:intergenic |
| AAGGAAGATGAAGCTTTCCA+AGG | 0.615641 | 1:+62219657 | MsG0180003431.01.T01:CDS |
| AAGGCTATGTTGAAAGAACA+AGG | 0.632753 | 1:+62221074 | MsG0180003431.01.T01:CDS |
| TCCAAAATAGGCGTGCTAGG+TGG | 0.637372 | 1:+62219716 | MsG0180003431.01.T01:CDS |
| TTACTATACAGAAATGTCAG+TGG | 0.650416 | 1:+62221121 | MsG0180003431.01.T01:CDS |
| TGCTCCAACAGAGAGGTGAA+GGG | 0.655501 | 1:+62221188 | MsG0180003431.01.T01:CDS |
| AACCAAATAGCAATTTGACG+AGG | 0.698239 | 1:-62219694 | None:intergenic |
| TCTACGTTGCTCCAACAGAG+AGG | 0.709736 | 1:+62221181 | MsG0180003431.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAAAAATAAATTATTTA+AGG | + | Chr1:62220182-62220201 | MsG0180003431.01.T01:intron | 10.0% |
| !!! | AAAATATTGTTTTAAAGTTT+AGG | - | Chr1:62219460-62219479 | None:intergenic | 10.0% |
| !!! | TGTTATTTTAAATAATCAAA+TGG | + | Chr1:62220039-62220058 | MsG0180003431.01.T01:intron | 10.0% |
| !!! | TTTTCTCTTATTTATATTAT+TGG | + | Chr1:62220721-62220740 | MsG0180003431.01.T01:intron | 10.0% |
| !! | AAAGTAAAATAGAGTTTAAT+TGG | + | Chr1:62220951-62220970 | MsG0180003431.01.T01:intron | 15.0% |
| !! | TACGTAAAAAAAATCTAAAA+TGG | + | Chr1:62220267-62220286 | MsG0180003431.01.T01:intron | 15.0% |
| !! | TATTAAATATTAAAGTAGCA+TGG | - | Chr1:62220922-62220941 | None:intergenic | 15.0% |
| !!! | ATAATTTATTTTTCTCTTCT+TGG | - | Chr1:62220179-62220198 | None:intergenic | 15.0% |
| !!! | ATTTATATATGTAATTTGCA+TGG | - | Chr1:62221024-62221043 | None:intergenic | 15.0% |
| !!! | GAAGTATATGTTTTTATTTT+CGG | + | Chr1:62220374-62220393 | MsG0180003431.01.T01:intron | 15.0% |
| !! | ATCGAAAACGTATAAATATA+TGG | + | Chr1:62220227-62220246 | MsG0180003431.01.T01:intron | 20.0% |
| !! | ATTATTGCTGGTAAATAAAA+TGG | + | Chr1:62221488-62221507 | MsG0180003431.01.T01:three_prime_UTR | 20.0% |
| !! | ATTCAAAATTTACGAATGTT+TGG | + | Chr1:62219347-62219366 | MsG0180003431.01.T01:intron | 20.0% |
| !! | GTAAGTTAGAGTAATATATT+TGG | - | Chr1:62220434-62220453 | None:intergenic | 20.0% |
| !! | TAAATAGAGAAATACTTACA+TGG | - | Chr1:62220109-62220128 | None:intergenic | 20.0% |
| !! | TAACCCTATATTTAAACTTA+TGG | + | Chr1:62219239-62219258 | MsG0180003431.01.T01:intron | 20.0% |
| !! | TATATCAATGACTTATATTG+AGG | - | Chr1:62220461-62220480 | None:intergenic | 20.0% |
| !! | TCATTCTCGTATATTATTAT+CGG | + | Chr1:62219423-62219442 | MsG0180003431.01.T01:intron | 20.0% |
| !! | TGTCCATAAGTTTAAATATA+GGG | - | Chr1:62219245-62219264 | None:intergenic | 20.0% |
| !! | TTGTCCATAAGTTTAAATAT+AGG | - | Chr1:62219246-62219265 | None:intergenic | 20.0% |
| !!! | AAATATATGGTGTTGATATT+GGG | + | Chr1:62220240-62220259 | MsG0180003431.01.T01:intron | 20.0% |
| !!! | AAGCGCAAATAATTTTATTT+TGG | + | Chr1:62219967-62219986 | MsG0180003431.01.T01:intron | 20.0% |
| !!! | AATATTTTGTGTGTTTGTTA+AGG | + | Chr1:62219472-62219491 | MsG0180003431.01.T01:intron | 20.0% |
| !!! | ATTACAATGTGTTATTTTAG+TGG | + | Chr1:62220525-62220544 | MsG0180003431.01.T01:intron | 20.0% |
| !!! | ATTACATTCTAGAAGTTATT+AGG | - | Chr1:62219215-62219234 | None:intergenic | 20.0% |
| !!! | CTGAGATTATTTAATTTTAC+TGG | + | Chr1:62221394-62221413 | MsG0180003431.01.T01:three_prime_UTR | 20.0% |
| !!! | TAAATATATGGTGTTGATAT+TGG | + | Chr1:62220239-62220258 | MsG0180003431.01.T01:intron | 20.0% |
| !!! | TTATTTTGTCATAATCCTTA+CGG | + | Chr1:62220301-62220320 | MsG0180003431.01.T01:intron | 20.0% |
| ! | AATGAAGGCAAAATATAGTT+TGG | + | Chr1:62220404-62220423 | MsG0180003431.01.T01:intron | 25.0% |
| ! | AATTAAGGGTGATAGTTATA+AGG | - | Chr1:62221323-62221342 | None:intergenic | 25.0% |
| ! | ACACATACATACATACATAT+TGG | - | Chr1:62220812-62220831 | None:intergenic | 25.0% |
| ! | AGTTAGAGTAATATATTTGG+TGG | - | Chr1:62220431-62220450 | None:intergenic | 25.0% |
| ! | ATAAATTTATTCTAACGGTC+CGG | + | Chr1:62220483-62220502 | MsG0180003431.01.T01:intron | 25.0% |
| ! | ATGGAAAAAATGATGAAGTA+TGG | + | Chr1:62219544-62219563 | MsG0180003431.01.T01:CDS | 25.0% |
| ! | GCAAAAAAACTATAGATACA+TGG | - | Chr1:62219293-62219312 | None:intergenic | 25.0% |
| ! | TGATCAACTTTATGAGTTTA+TGG | - | Chr1:62220700-62220719 | None:intergenic | 25.0% |
| ! | TGGAAAAAATGATGAAGTAT+GGG | + | Chr1:62219545-62219564 | MsG0180003431.01.T01:CDS | 25.0% |
| ! | TTAGAATCGATAATAGTTGA+TGG | + | Chr1:62221429-62221448 | MsG0180003431.01.T01:three_prime_UTR | 25.0% |
| ! | TTTACCTTCTCATTGAAATT+TGG | - | Chr1:62220331-62220350 | None:intergenic | 25.0% |
| !!! | AAACTGTTGTTTCAATTTAG+AGG | + | Chr1:62221244-62221263 | MsG0180003431.01.T01:CDS | 25.0% |
| !!! | TATAGTTTTTTTGCTGTATC+TGG | + | Chr1:62219299-62219318 | MsG0180003431.01.T01:intron | 25.0% |
| !!! | TCATCATTTTTTCCATTTCT+GGG | - | Chr1:62219540-62219559 | None:intergenic | 25.0% |
| !!! | TTATTTTAGTGGTGTAAGTT+GGG | + | Chr1:62220536-62220555 | MsG0180003431.01.T01:intron | 25.0% |
| !!! | TTCATCATTTTTTCCATTTC+TGG | - | Chr1:62219541-62219560 | None:intergenic | 25.0% |
| ACAGATAGATCATTATGGAA+TGG | + | Chr1:62219041-62219060 | MsG0180003431.01.T01:exon | 30.0% | |
| AGTATTTGTGTGTGTCTAAA+TGG | + | Chr1:62220064-62220083 | MsG0180003431.01.T01:intron | 30.0% | |
| ATCAATGACTTATATTGAGG+TGG | - | Chr1:62220458-62220477 | None:intergenic | 30.0% | |
| GAACAATACCTAAATGGTTA+CGG | + | Chr1:62219920-62219939 | MsG0180003431.01.T01:intron | 30.0% | |
| GTCAATGAACAATACCTAAA+TGG | + | Chr1:62219914-62219933 | MsG0180003431.01.T01:intron | 30.0% | |
| GTGAAACAGATAGATCATTA+TGG | + | Chr1:62219036-62219055 | MsG0180003431.01.T01:exon | 30.0% | |
| TAGATCATTATGGAATGGAA+TGG | + | Chr1:62219046-62219065 | MsG0180003431.01.T01:exon | 30.0% | |
| TAGTCCAAATTTCAATGAGA+AGG | + | Chr1:62220324-62220343 | MsG0180003431.01.T01:intron | 30.0% | |
| TATCTGGCATATATATAGCT+TGG | + | Chr1:62219315-62219334 | MsG0180003431.01.T01:intron | 30.0% | |
| TGTCACCATGATTTCATTAA+GGG | - | Chr1:62220594-62220613 | None:intergenic | 30.0% | |
| TTACTATACAGAAATGTCAG+TGG | + | Chr1:62221121-62221140 | MsG0180003431.01.T01:CDS | 30.0% | |
| ! | ATTTTCGGTGAACTTAATGA+AGG | + | Chr1:62220389-62220408 | MsG0180003431.01.T01:intron | 30.0% |
| ! | GTCTAAATGGATTTCATTTG+TGG | + | Chr1:62220077-62220096 | MsG0180003431.01.T01:intron | 30.0% |
| ! | TTTTACCTTGATATGAGCAT+TGG | - | Chr1:62219132-62219151 | None:intergenic | 30.0% |
| !! | TAGTTGATGGAAAAGCATTT+AGG | + | Chr1:62221442-62221461 | MsG0180003431.01.T01:three_prime_UTR | 30.0% |
| !! | TTGCTATTTGGTTCCAAAAT+AGG | + | Chr1:62219704-62219723 | MsG0180003431.01.T01:CDS | 30.0% |
| !!! | AGCTTTTTCATCATAAGATC+CGG | - | Chr1:62220505-62220524 | None:intergenic | 30.0% |
| !!! | GTTATTTTAGTGGTGTAAGT+TGG | + | Chr1:62220535-62220554 | MsG0180003431.01.T01:intron | 30.0% |
| !!! | TATTTTAGTGGTGTAAGTTG+GGG | + | Chr1:62220537-62220556 | MsG0180003431.01.T01:intron | 30.0% |
| AAAGAACAAGGTAACTCTTG+TGG | + | Chr1:62221086-62221105 | MsG0180003431.01.T01:CDS | 35.0% | |
| AAAGCTTCATCTTCCTTTGA+GGG | - | Chr1:62219654-62219673 | None:intergenic | 35.0% | |
| AACCAAATAGCAATTTGACG+AGG | - | Chr1:62219697-62219716 | None:intergenic | 35.0% | |
| AAGGCTATGTTGAAAGAACA+AGG | + | Chr1:62221074-62221093 | MsG0180003431.01.T01:CDS | 35.0% | |
| AGCATTTAGGAACTGACATT+AGG | + | Chr1:62221455-62221474 | MsG0180003431.01.T01:three_prime_UTR | 35.0% | |
| ATACGAATAAGTGTAGACGT+CGG | + | Chr1:62220151-62220170 | MsG0180003431.01.T01:intron | 35.0% | |
| CAACAGTTGAACATTGATGA+AGG | + | Chr1:62221221-62221240 | MsG0180003431.01.T01:CDS | 35.0% | |
| CGTCTACACTTATTCGTATA+TGG | - | Chr1:62220150-62220169 | None:intergenic | 35.0% | |
| GGAGTAGGATAAATTATTGC+TGG | + | Chr1:62221476-62221495 | MsG0180003431.01.T01:three_prime_UTR | 35.0% | |
| GTGTCACCATGATTTCATTA+AGG | - | Chr1:62220595-62220614 | None:intergenic | 35.0% | |
| TACAACCAATGCTCATATCA+AGG | + | Chr1:62219124-62219143 | MsG0180003431.01.T01:CDS | 35.0% | |
| TAGTTATAAGGTACAGAAGC+AGG | - | Chr1:62221311-62221330 | None:intergenic | 35.0% | |
| TGACACCCTTAATGAAATCA+TGG | + | Chr1:62220586-62220605 | MsG0180003431.01.T01:intron | 35.0% | |
| TTCACTTAGACACCAATTTG+AGG | + | Chr1:62219768-62219787 | MsG0180003431.01.T01:CDS | 35.0% | |
| TTGAAATTTGGACTACCGTA+AGG | - | Chr1:62220319-62220338 | None:intergenic | 35.0% | |
| ! | CATTTCTGGGAACATTGTAT+CGG | - | Chr1:62219527-62219546 | None:intergenic | 35.0% |
| ! | GTGTGTTTGTTAAGGAATGA+TGG | + | Chr1:62219480-62219499 | MsG0180003431.01.T01:intron | 35.0% |
| !! | AAATTTGTTGTTCCCTGTTC+AGG | + | Chr1:62221040-62221059 | MsG0180003431.01.T01:intron | 35.0% |
| !! | ATACAAGTGTTCAAGTTGCT+TGG | - | Chr1:62219746-62219765 | None:intergenic | 35.0% |
| !!! | TATTTTGGCGCATACACAAA+TGG | + | Chr1:62219982-62220001 | MsG0180003431.01.T01:intron | 35.0% |
| AACTCTTGTGGTAGAATGCA+AGG | + | Chr1:62221098-62221117 | MsG0180003431.01.T01:CDS | 40.0% | |
| AAGGAAGATGAAGCTTTCCA+AGG | + | Chr1:62219657-62219676 | MsG0180003431.01.T01:CDS | 40.0% | |
| AGATCAAACTAGACCCTCAA+AGG | + | Chr1:62219638-62219657 | MsG0180003431.01.T01:CDS | 40.0% | |
| ATGAAGCTTTCCAAGGAGTT+AGG | + | Chr1:62219664-62219683 | MsG0180003431.01.T01:CDS | 40.0% | |
| CGAACGCGTAACTAAAATCA+TGG | + | Chr1:62220633-62220652 | MsG0180003431.01.T01:intron | 40.0% | |
| CGATACAATGTTCCCAGAAA+TGG | + | Chr1:62219525-62219544 | MsG0180003431.01.T01:CDS | 40.0% | |
| GAAACAAAGTTGCAGTGCTA+TGG | - | Chr1:62220848-62220867 | None:intergenic | 40.0% | |
| GAAAGCTTCATCTTCCTTTG+AGG | - | Chr1:62219655-62219674 | None:intergenic | 40.0% | |
| GTAGTTGTAGAGGAAGCTTA+AGG | - | Chr1:62219107-62219126 | None:intergenic | 40.0% | |
| TAACACAGCCGTAACCATTT+AGG | - | Chr1:62219931-62219950 | None:intergenic | 40.0% | |
| TAGGAACTGACATTAGGAGT+AGG | + | Chr1:62221461-62221480 | MsG0180003431.01.T01:three_prime_UTR | 40.0% | |
| TCAACTTCACAACCTGAACA+GGG | - | Chr1:62221055-62221074 | None:intergenic | 40.0% | |
| TGAAGCTTTCCAAGGAGTTA+GGG | + | Chr1:62219665-62219684 | MsG0180003431.01.T01:CDS | 40.0% | |
| TGGAAGTGAAACAACAAGAC+TGG | + | Chr1:62219500-62219519 | MsG0180003431.01.T01:CDS | 40.0% | |
| TTCAACTTCACAACCTGAAC+AGG | - | Chr1:62221056-62221075 | None:intergenic | 40.0% | |
| ! | AACAGTAGAAAGCACATCAG+AGG | + | Chr1:62221154-62221173 | MsG0180003431.01.T01:CDS | 40.0% |
| ! | AGCCTCGTCAAATTGCTATT+TGG | + | Chr1:62219692-62219711 | MsG0180003431.01.T01:CDS | 40.0% |
| ! | CCATGTCTCTTTTGTAGACA+CGG | + | Chr1:62220782-62220801 | MsG0180003431.01.T01:intron | 40.0% |
| ! | GTAAGTTGGGGCATTCTATT+TGG | + | Chr1:62220549-62220568 | MsG0180003431.01.T01:intron | 40.0% |
| ! | TACATGTGTCGATATCACGT+TGG | - | Chr1:62219386-62219405 | None:intergenic | 40.0% |
| !! | ACGGCTGTGTTATTTAGATG+AGG | + | Chr1:62219939-62219958 | MsG0180003431.01.T01:intron | 40.0% |
| !! | ACTGGAGAGTAGTTTTCAAG+AGG | + | Chr1:62219615-62219634 | MsG0180003431.01.T01:CDS | 40.0% |
| !! | AGCATTGGTTGTAGTTGTAG+AGG | - | Chr1:62219117-62219136 | None:intergenic | 40.0% |
| !! | CGGCTGTGTTATTTAGATGA+GGG | + | Chr1:62219940-62219959 | MsG0180003431.01.T01:intron | 40.0% |
| !! | TGTTCAGGTTGTGAAGTTGA+AGG | + | Chr1:62221055-62221074 | MsG0180003431.01.T01:intron | 40.0% |
| AAAACAGCAGCTTCAGGATG+AGG | + | Chr1:62219804-62219823 | MsG0180003431.01.T01:CDS | 45.0% | |
| AGGAAGCTTAAGGAAGACTC+TGG | - | Chr1:62219097-62219116 | None:intergenic | 45.0% | |
| CAAGGAAAAACAGCAGCTTC+AGG | + | Chr1:62219798-62219817 | MsG0180003431.01.T01:CDS | 45.0% | |
| CCGTGTCTACAAAAGAGACA+TGG | - | Chr1:62220785-62220804 | None:intergenic | 45.0% | |
| CCTTGGACACAACCTCAAAT+TGG | - | Chr1:62219783-62219802 | None:intergenic | 45.0% | |
| CTTAAGGAAGACTCTGGTTG+AGG | - | Chr1:62219091-62219110 | None:intergenic | 45.0% | |
| GAGTGAACAGATGGAATCAC+TGG | + | Chr1:62219597-62219616 | MsG0180003431.01.T01:CDS | 45.0% | |
| GCGATTAACGAGTGAACAGA+TGG | + | Chr1:62219588-62219607 | MsG0180003431.01.T01:CDS | 45.0% | |
| ! | AGTTGGGGCATTCTATTTGG+TGG | + | Chr1:62220552-62220571 | MsG0180003431.01.T01:intron | 45.0% |
| ! | CCAATTTGAGGTTGTGTCCA+AGG | + | Chr1:62219780-62219799 | MsG0180003431.01.T01:CDS | 45.0% |
| !!! | CTGAAGCTGCTGTTTTTCCT+TGG | - | Chr1:62219800-62219819 | None:intergenic | 45.0% |
| !! | ATATTATAAATTTATTCTAA+CGG | + | Chr1:62220478-62220497 | MsG0180003431.01.T01:intron | 5.0% |
| !! | ATTACTTAATAATATAATTA+AGG | - | Chr1:62221338-62221357 | None:intergenic | 5.0% |
| !! | TTACTTAATAATATAATTAA+GGG | - | Chr1:62221337-62221356 | None:intergenic | 5.0% |
| CTTTCCCTTCACCTCTCTGT+TGG | - | Chr1:62221195-62221214 | None:intergenic | 50.0% | |
| GGTTCCAAAATAGGCGTGCT+AGG | + | Chr1:62219713-62219732 | MsG0180003431.01.T01:CDS | 50.0% | |
| GTCGATATCACGTTGGACAC+TGG | - | Chr1:62219379-62219398 | None:intergenic | 50.0% | |
| GTGTTCCACTATTGCCCTAC+TGG | + | Chr1:62221285-62221304 | MsG0180003431.01.T01:CDS | 50.0% | |
| TCCAAAATAGGCGTGCTAGG+TGG | + | Chr1:62219716-62219735 | MsG0180003431.01.T01:CDS | 50.0% | |
| TCTACGTTGCTCCAACAGAG+AGG | + | Chr1:62221181-62221200 | MsG0180003431.01.T01:CDS | 50.0% | |
| TGCTCCAACAGAGAGGTGAA+GGG | + | Chr1:62221188-62221207 | MsG0180003431.01.T01:CDS | 50.0% | |
| TTGCTCCAACAGAGAGGTGA+AGG | + | Chr1:62221187-62221206 | MsG0180003431.01.T01:CDS | 50.0% | |
| ! | TCCACCTAGCACGCCTATTT+TGG | - | Chr1:62219720-62219739 | None:intergenic | 50.0% |
| AGGCTGTAGCCCTAACTCCT+TGG | - | Chr1:62219677-62219696 | None:intergenic | 55.0% | |
| AGGTACAGAAGCAGGCCAGT+AGG | - | Chr1:62221303-62221322 | None:intergenic | 55.0% | |
| GGTACAGAAGCAGGCCAGTA+GGG | - | Chr1:62221302-62221321 | None:intergenic | 55.0% | |
| GCAGGCCAGTAGGGCAATAG+TGG | - | Chr1:62221293-62221312 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 62219034 | 62221515 | 62219034 | ID=MsG0180003431.01;Name=MsG0180003431.01 |
| Chr1 | mRNA | 62219034 | 62221515 | 62219034 | ID=MsG0180003431.01.T01;Parent=MsG0180003431.01;Name=MsG0180003431.01.T01;_AED=0.48;_eAED=0.48;_QI=21|1|1|1|1|1|3|175|233 |
| Chr1 | exon | 62219034 | 62219145 | 62219034 | ID=MsG0180003431.01.T01:exon:23417;Parent=MsG0180003431.01.T01 |
| Chr1 | exon | 62219494 | 62219825 | 62219494 | ID=MsG0180003431.01.T01:exon:23418;Parent=MsG0180003431.01.T01 |
| Chr1 | exon | 62221062 | 62221515 | 62221062 | ID=MsG0180003431.01.T01:exon:23419;Parent=MsG0180003431.01.T01 |
| Chr1 | five_prime_UTR | 62219034 | 62219054 | 62219034 | ID=MsG0180003431.01.T01:five_prime_utr;Parent=MsG0180003431.01.T01 |
| Chr1 | CDS | 62219055 | 62219145 | 62219055 | ID=MsG0180003431.01.T01:cds;Parent=MsG0180003431.01.T01 |
| Chr1 | CDS | 62219494 | 62219825 | 62219494 | ID=MsG0180003431.01.T01:cds;Parent=MsG0180003431.01.T01 |
| Chr1 | CDS | 62221062 | 62221340 | 62221062 | ID=MsG0180003431.01.T01:cds;Parent=MsG0180003431.01.T01 |
| Chr1 | three_prime_UTR | 62221341 | 62221515 | 62221341 | ID=MsG0180003431.01.T01:three_prime_utr;Parent=MsG0180003431.01.T01 |
| Gene Sequence |
| Protein sequence |
