Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033143.01.T01 | XP_003602146.1 | 93.956 | 364 | 22 | 0 | 1 | 364 | 3 | 366 | 0 | 724 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033143.01.T01 | Q84VY3 | 69.492 | 354 | 103 | 2 | 16 | 364 | 38 | 391 | 0 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033143.01.T01 | G7J653 | 93.956 | 364 | 22 | 0 | 1 | 364 | 3 | 366 | 0.0 | 724 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048357.01 | MsG0680033143.01 | 0.867591 | 1.222514e-65 | 4.291644e-62 |
| MsG0180000632.01 | MsG0680033143.01 | 0.815366 | 9.593633e-52 | 6.601210e-49 |
| MsG0180001200.01 | MsG0680033143.01 | 0.869735 | 2.478411e-66 | 9.398891e-63 |
| MsG0180003431.01 | MsG0680033143.01 | 0.829489 | 5.003196e-55 | 5.128170e-52 |
| MsG0180005540.01 | MsG0680033143.01 | 0.816551 | 5.216031e-52 | 3.707329e-49 |
| MsG0380011496.01 | MsG0680033143.01 | 0.811327 | 7.401921e-51 | 4.568090e-48 |
| MsG0380011675.01 | MsG0680033143.01 | 0.813525 | 2.449790e-51 | 1.603637e-48 |
| MsG0680031707.01 | MsG0680033143.01 | 0.844926 | 5.586843e-59 | 9.159495e-56 |
| MsG0680033143.01 | MsG0680034835.01 | 0.805925 | 1.054710e-49 | 5.650376e-47 |
| MsG0680033143.01 | MsG0780040846.01 | 0.801165 | 1.023890e-48 | 4.856288e-46 |
| MsG0680033143.01 | MsG0780040966.01 | 0.838385 | 2.967060e-57 | 3.967704e-54 |
| MsG0680033143.01 | MsG0880045585.01 | 0.833368 | 5.552551e-56 | 6.381325e-53 |
| MsG0680033143.01 | MsG0880045586.01 | 0.843057 | 1.770726e-58 | 2.736959e-55 |
| MsG0680033143.01 | MsG0880046944.01 | 0.818574 | 1.826240e-52 | 1.372090e-49 |
| MsG0480018909.01 | MsG0680033143.01 | 0.813129 | 2.992385e-51 | 1.937650e-48 |
| MsG0580024094.01 | MsG0680033143.01 | 0.857753 | 1.316284e-62 | 3.283249e-59 |
| MsG0580025974.01 | MsG0680033143.01 | 0.802480 | 5.499564e-49 | 2.696808e-46 |
| MsG0380016465.01 | MsG0680033143.01 | 0.838479 | 2.806311e-57 | 3.763454e-54 |
| MsG0380016466.01 | MsG0680033143.01 | 0.859481 | 4.014444e-63 | 1.061810e-59 |
| MsG0580029310.01 | MsG0680033143.01 | 0.805654 | 1.202791e-49 | 6.398966e-47 |
| MsG0580029405.01 | MsG0680033143.01 | 0.846287 | 2.387667e-59 | 4.089318e-56 |
| MsG0580029417.01 | MsG0680033143.01 | 0.815378 | 9.531230e-52 | 6.560503e-49 |
| MsG0580029418.01 | MsG0680033143.01 | 0.838502 | 2.768809e-57 | 3.715646e-54 |
| MsG0280007305.01 | MsG0680033143.01 | 0.837161 | 6.119386e-57 | 7.881476e-54 |
| MsG0280010163.01 | MsG0680033143.01 | 0.816922 | 4.307485e-52 | 3.092954e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033143.01.T01 | MTR_3g090100 | 93.956 | 364 | 22 | 0 | 1 | 364 | 3 | 366 | 0.0 | 724 |
| MsG0680033143.01.T01 | MTR_3g090020 | 90.934 | 364 | 33 | 0 | 1 | 364 | 3 | 366 | 0.0 | 698 |
| MsG0680033143.01.T01 | MTR_3g089025 | 79.781 | 366 | 70 | 1 | 3 | 364 | 4 | 369 | 0.0 | 610 |
| MsG0680033143.01.T01 | MTR_3g090010 | 76.022 | 367 | 83 | 1 | 1 | 362 | 2 | 368 | 0.0 | 587 |
| MsG0680033143.01.T01 | MTR_1g029150 | 75.731 | 342 | 80 | 1 | 24 | 362 | 47 | 388 | 0.0 | 553 |
| MsG0680033143.01.T01 | MTR_5g024130 | 65.805 | 348 | 111 | 3 | 21 | 362 | 46 | 391 | 1.09e-171 | 484 |
| MsG0680033143.01.T01 | MTR_4g087440 | 65.805 | 348 | 111 | 3 | 21 | 362 | 46 | 391 | 1.43e-171 | 483 |
| MsG0680033143.01.T01 | MTR_3g090110 | 50.847 | 118 | 35 | 1 | 208 | 325 | 1 | 95 | 1.56e-31 | 115 |
| MsG0680033143.01.T01 | MTR_3g089980 | 59.794 | 97 | 26 | 1 | 229 | 325 | 7 | 90 | 5.92e-29 | 108 |
| MsG0680033143.01.T01 | MTR_3g089973 | 40.541 | 148 | 44 | 3 | 208 | 355 | 1 | 104 | 3.90e-20 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033143.01.T01 | AT1G43800 | 69.492 | 354 | 103 | 2 | 16 | 364 | 38 | 391 | 0.0 | 521 |
| MsG0680033143.01.T01 | AT3G02630 | 65.680 | 338 | 112 | 2 | 27 | 362 | 59 | 394 | 2.92e-168 | 475 |
| MsG0680033143.01.T01 | AT5G16240 | 63.324 | 349 | 119 | 3 | 21 | 362 | 46 | 392 | 1.27e-165 | 468 |
| MsG0680033143.01.T01 | AT3G02610 | 59.677 | 372 | 130 | 5 | 12 | 364 | 43 | 413 | 1.71e-162 | 461 |
| MsG0680033143.01.T01 | AT3G02610 | 59.677 | 372 | 130 | 5 | 12 | 364 | 41 | 411 | 2.61e-162 | 461 |
| MsG0680033143.01.T01 | AT2G43710 | 63.422 | 339 | 121 | 2 | 27 | 364 | 65 | 401 | 6.70e-162 | 459 |
| MsG0680033143.01.T01 | AT2G43710 | 63.422 | 339 | 121 | 2 | 27 | 364 | 65 | 401 | 7.07e-162 | 459 |
| MsG0680033143.01.T01 | AT3G02620 | 59.615 | 364 | 135 | 4 | 12 | 364 | 44 | 406 | 7.54e-162 | 459 |
| MsG0680033143.01.T01 | AT3G02620 | 59.615 | 364 | 135 | 4 | 12 | 364 | 41 | 403 | 1.17e-161 | 459 |
| MsG0680033143.01.T01 | AT5G16230 | 61.988 | 342 | 125 | 3 | 27 | 364 | 61 | 401 | 1.92e-160 | 456 |
| MsG0680033143.01.T01 | AT5G16230 | 61.963 | 326 | 119 | 3 | 43 | 364 | 1 | 325 | 2.60e-154 | 437 |
| MsG0680033143.01.T01 | AT3G02620 | 61.585 | 328 | 119 | 3 | 43 | 364 | 1 | 327 | 2.03e-152 | 432 |
Find 88 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGATTATCTTGTGGTTT+TGG | 0.263671 | 6:+58012748 | MsG0680033143.01.T01:CDS |
| AATCTTGCGATGCATCATTT+TGG | 0.286538 | 6:-58013881 | None:intergenic |
| GAGACATTGAGTGTGTCTTT+TGG | 0.299881 | 6:-58012547 | None:intergenic |
| CCAACTTGTTTATCCATGTT+TGG | 0.336928 | 6:-58012808 | None:intergenic |
| GTCTCACACCATGGGCTATA+TGG | 0.350432 | 6:+58012858 | MsG0680033143.01.T01:CDS |
| CTCTCAGGGCCTGCACTTGA+TGG | 0.353548 | 6:-58012706 | None:intergenic |
| TGCACCTAGATTAAGAAAAC+TGG | 0.364017 | 6:+58014104 | MsG0680033143.01.T01:CDS |
| GGGCTATATGGTCACGCTCT+TGG | 0.370720 | 6:+58012870 | MsG0680033143.01.T01:CDS |
| TGCCAGCTCCAATCAAATAT+TGG | 0.374430 | 6:-58012982 | None:intergenic |
| TGTTCAAATCACTAGAGAAA+TGG | 0.378630 | 6:+58012585 | MsG0680033143.01.T01:CDS |
| CTTGATTAGACGATGGAGAT+TGG | 0.392791 | 6:+58014023 | MsG0680033143.01.T01:CDS |
| GTTCAAATCACTAGAGAAAT+GGG | 0.399384 | 6:+58012586 | MsG0680033143.01.T01:CDS |
| AAGACTATCCAATATTTGAT+TGG | 0.400329 | 6:+58012974 | MsG0680033143.01.T01:CDS |
| GCTCAGCCGTTCGATCTCTC+AGG | 0.408301 | 6:-58012721 | None:intergenic |
| GGCTGCCAGCATTCCTCCAC+AGG | 0.422913 | 6:-58012638 | None:intergenic |
| GTGTACACAAAACCCATGTA+TGG | 0.438769 | 6:-58013667 | None:intergenic |
| AGATCAATCACAAATTCTCT+TGG | 0.444851 | 6:+58014154 | MsG0680033143.01.T01:CDS |
| GATGGAGTTGGCGACGAGAC+TGG | 0.447459 | 6:+58012830 | MsG0680033143.01.T01:CDS |
| TGGAGATTGGAGAAGATTGA+GGG | 0.448075 | 6:+58014036 | MsG0680033143.01.T01:CDS |
| TCTGCAGTGGCACAACGTAT+TGG | 0.460018 | 6:+58013961 | MsG0680033143.01.T01:CDS |
| ATCCAATATTTGATTGGAGC+TGG | 0.463614 | 6:+58012980 | MsG0680033143.01.T01:CDS |
| AAACTGGAAGAGCGTCTTGA+TGG | 0.465202 | 6:+58014120 | MsG0680033143.01.T01:CDS |
| TACCGAAAACAACCCATACA+TGG | 0.467155 | 6:+58013654 | MsG0680033143.01.T01:CDS |
| AGTTGATCCCACCGAGGCTA+TGG | 0.482931 | 6:+58013849 | MsG0680033143.01.T01:CDS |
| ATGGAGATTGGAGAAGATTG+AGG | 0.484391 | 6:+58014035 | MsG0680033143.01.T01:CDS |
| GGCTATGGCCACCATAGCCT+CGG | 0.489653 | 6:-58013860 | None:intergenic |
| TTCACAAAGTGTGTTGCCAT+TGG | 0.492726 | 6:+58012610 | MsG0680033143.01.T01:CDS |
| AAAACCACAAGATAATCATC+TGG | 0.498146 | 6:-58012746 | None:intergenic |
| TTTATCCATGTTTGGTACGT+AGG | 0.501588 | 6:-58012800 | None:intergenic |
| TCTCTTTAGCCAACCTACCT+AGG | 0.503420 | 6:-58013729 | None:intergenic |
| CTCTCACTTGCACGCATATG+CGG | 0.504929 | 6:+58013760 | MsG0680033143.01.T01:CDS |
| GTACGTAGGCAATGCTTCCT+CGG | 0.510676 | 6:-58012786 | None:intergenic |
| TCGGAAGGTAGTGATGAGTC+TGG | 0.523237 | 6:-58012674 | None:intergenic |
| TCTCACTTGCACGCATATGC+GGG | 0.524777 | 6:+58013761 | MsG0680033143.01.T01:CDS |
| GCTTCCAGATGATTATCTTG+TGG | 0.527931 | 6:+58012742 | MsG0680033143.01.T01:CDS |
| CCCGCTCACTTGATGCATGA+TGG | 0.529067 | 6:+58013910 | MsG0680033143.01.T01:CDS |
| AACTGGAAGAGCGTCTTGAT+GGG | 0.529372 | 6:+58014121 | MsG0680033143.01.T01:CDS |
| TCCACTACAATGTTATCTAA+AGG | 0.529663 | 6:+58012499 | MsG0680033143.01.T01:CDS |
| CCAAACATGGATAAACAAGT+TGG | 0.530351 | 6:+58012808 | MsG0680033143.01.T01:CDS |
| AAAACTTATCTATATCTCTC+CGG | 0.537755 | 6:+58012926 | MsG0680033143.01.T01:CDS |
| CATTGCCTACGTACCAAACA+TGG | 0.538689 | 6:+58012795 | MsG0680033143.01.T01:CDS |
| ATATTTGATTGGAGCTGGCA+TGG | 0.538813 | 6:+58012985 | MsG0680033143.01.T01:CDS |
| AAATGTGGCTCGCTCTTGAA+AGG | 0.540932 | 6:-58013692 | None:intergenic |
| TCAAACCTGTGGAGGAATGC+TGG | 0.543810 | 6:+58012633 | MsG0680033143.01.T01:CDS |
| CCATCATGCATCAAGTGAGC+GGG | 0.549039 | 6:-58013910 | None:intergenic |
| TCCTCCACAGGTTTGACCAA+TGG | 0.550904 | 6:-58012626 | None:intergenic |
| ATAAACAAGTTGGATGGAGT+TGG | 0.559959 | 6:+58012818 | MsG0680033143.01.T01:CDS |
| CGCATATGCGTGCAAGTGAG+AGG | 0.561577 | 6:-58013759 | None:intergenic |
| TGAGTTCATCCATCAAGTGC+AGG | 0.567672 | 6:+58012697 | MsG0680033143.01.T01:CDS |
| TATGGCCACCATAGCCTCGG+TGG | 0.570103 | 6:-58013857 | None:intergenic |
| GCCTTTAGATAACATTGTAG+TGG | 0.571116 | 6:-58012500 | None:intergenic |
| ACATGGATAAACAAGTTGGA+TGG | 0.572710 | 6:+58012812 | MsG0680033143.01.T01:CDS |
| ATTGAGGGTTTGACAAGCGA+AGG | 0.578019 | 6:+58014051 | MsG0680033143.01.T01:CDS |
| CTCAGCCGTTCGATCTCTCA+GGG | 0.579284 | 6:-58012720 | None:intergenic |
| TTGTTCATGGTGTAGGATGT+GGG | 0.582554 | 6:+58013631 | MsG0680033143.01.T01:intron |
| CAACAATATGCACCCATGCA+TGG | 0.584323 | 6:+58012474 | MsG0680033143.01.T01:CDS |
| TGTCACACGGCAACCTAGGT+AGG | 0.586115 | 6:+58013716 | MsG0680033143.01.T01:CDS |
| CATGCACATATCAACTCGAC+CGG | 0.587049 | 6:-58012945 | None:intergenic |
| TGATCCCACCGAGGCTATGG+TGG | 0.588287 | 6:+58013852 | MsG0680033143.01.T01:CDS |
| TGGTTCAAGTCTCACACCAT+GGG | 0.600203 | 6:+58012850 | MsG0680033143.01.T01:CDS |
| TTTGTGTCACACGGCAACCT+AGG | 0.600519 | 6:+58013712 | MsG0680033143.01.T01:CDS |
| TAGAGTTCTTGATTAGACGA+TGG | 0.605110 | 6:+58014016 | MsG0680033143.01.T01:CDS |
| TCCATCATGCATCAAGTGAG+CGG | 0.608659 | 6:-58013911 | None:intergenic |
| CTGGTTCAAGTCTCACACCA+TGG | 0.612232 | 6:+58012849 | MsG0680033143.01.T01:CDS |
| ATTGTAGTGGAGTCCATGCA+TGG | 0.616264 | 6:-58012487 | None:intergenic |
| GCAGGCCCTGAGAGATCGAA+CGG | 0.616767 | 6:+58012715 | MsG0680033143.01.T01:CDS |
| CGAGCCACATTTGTGTCACA+CGG | 0.618843 | 6:+58013703 | MsG0680033143.01.T01:CDS |
| ATGGCCACCATAGCCTCGGT+GGG | 0.619166 | 6:-58013856 | None:intergenic |
| TGCAATTATAAAACTTCACA+CGG | 0.621217 | 6:-58014196 | None:intergenic |
| GAGCGTGACCATATAGCCCA+TGG | 0.625365 | 6:-58012866 | None:intergenic |
| ACCGAAAACAACCCATACAT+GGG | 0.628237 | 6:+58013655 | MsG0680033143.01.T01:CDS |
| GTTGCCATTGGTCAAACCTG+TGG | 0.631709 | 6:+58012622 | MsG0680033143.01.T01:CDS |
| ACACGGCAACCTAGGTAGGT+TGG | 0.632318 | 6:+58013720 | MsG0680033143.01.T01:CDS |
| GGTAGGTTGGCTAAAGAGAG+AGG | 0.635441 | 6:+58013733 | MsG0680033143.01.T01:CDS |
| TGTACACAAAACCCATGTAT+GGG | 0.636404 | 6:-58013666 | None:intergenic |
| GAATGCATATGTGAGGATTG+TGG | 0.642224 | 6:+58013813 | MsG0680033143.01.T01:CDS |
| GAGTCTGGCAACAAATTATG+TGG | 0.650290 | 6:-58012659 | None:intergenic |
| GCCATTGGTCAAACCTGTGG+AGG | 0.654988 | 6:+58012625 | MsG0680033143.01.T01:CDS |
| CACTTGATGGATGAACTCAT+CGG | 0.663477 | 6:-58012693 | None:intergenic |
| GTCACGAGAATGCATATGTG+AGG | 0.664895 | 6:+58013806 | MsG0680033143.01.T01:CDS |
| ACCGCTGAAGAAAATAGACA+TGG | 0.664992 | 6:+58012893 | MsG0680033143.01.T01:CDS |
| CTCGTGACGCTTCTCATCAG+CGG | 0.665409 | 6:-58013791 | None:intergenic |
| TGATGGATGAACTCATCGGA+AGG | 0.673548 | 6:-58012689 | None:intergenic |
| TTGTAGTGGAGTCCATGCAT+GGG | 0.697506 | 6:-58012486 | None:intergenic |
| CATGCACAAGAGTTTGTGTG+TGG | 0.720139 | 6:+58014078 | MsG0680033143.01.T01:CDS |
| GTTGCCGTGTGACACAAATG+TGG | 0.723814 | 6:-58013707 | None:intergenic |
| GGTCGGTGGCATGATCACCG+AGG | 0.744020 | 6:+58012769 | MsG0680033143.01.T01:CDS |
| TCTAGAAGTTGATCCCACCG+AGG | 0.786898 | 6:+58013843 | MsG0680033143.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATGAAAAATGTTATT+TGG | - | Chr6:58013605-58013624 | None:intergenic | 10.0% |
| !! | ATAAATTAATTGATTGTTCA+TGG | + | Chr6:58013618-58013637 | MsG0680033143.01.T01:intron | 15.0% |
| !! | TAATAAATCGTATTTGTGTA+TGG | - | Chr6:58013284-58013303 | None:intergenic | 20.0% |
| ! | AAAACTTATCTATATCTCTC+CGG | + | Chr6:58012926-58012945 | MsG0680033143.01.T01:CDS | 25.0% |
| ! | AAGACTATCCAATATTTGAT+TGG | + | Chr6:58012974-58012993 | MsG0680033143.01.T01:CDS | 25.0% |
| ! | ACAATGCATAATATATGCAA+AGG | + | Chr6:58013413-58013432 | MsG0680033143.01.T01:intron | 25.0% |
| ! | GAACGACTATTAAAAAATAG+TGG | - | Chr6:58013477-58013496 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTCTCGTTAGTT+TGG | - | Chr6:58013186-58013205 | None:intergenic | 25.0% |
| !!! | TTCTATTTCTTTTTCTTTCG+AGG | + | Chr6:58013566-58013585 | MsG0680033143.01.T01:intron | 25.0% |
| AAAACCACAAGATAATCATC+TGG | - | Chr6:58012749-58012768 | None:intergenic | 30.0% | |
| ACATATACATGCACACAATA+TGG | + | Chr6:58013039-58013058 | MsG0680033143.01.T01:intron | 30.0% | |
| AGATCAATCACAAATTCTCT+TGG | + | Chr6:58014154-58014173 | MsG0680033143.01.T01:CDS | 30.0% | |
| AGCTCACAAAGATAAAATAG+AGG | - | Chr6:58013376-58013395 | None:intergenic | 30.0% | |
| ATATGTATAGATGACAGTGA+CGG | - | Chr6:58013025-58013044 | None:intergenic | 30.0% | |
| GTTCAAATCACTAGAGAAAT+GGG | + | Chr6:58012586-58012605 | MsG0680033143.01.T01:CDS | 30.0% | |
| TAATTGATTGTTCATGGTGT+AGG | + | Chr6:58013624-58013643 | MsG0680033143.01.T01:intron | 30.0% | |
| TCCACTACAATGTTATCTAA+AGG | + | Chr6:58012499-58012518 | MsG0680033143.01.T01:CDS | 30.0% | |
| TGTTCAAATCACTAGAGAAA+TGG | + | Chr6:58012585-58012604 | MsG0680033143.01.T01:CDS | 30.0% | |
| ! | AGATGATTATCTTGTGGTTT+TGG | + | Chr6:58012748-58012767 | MsG0680033143.01.T01:CDS | 30.0% |
| ! | TCTTCCAGTTTTCTTAATCT+AGG | - | Chr6:58014111-58014130 | None:intergenic | 30.0% |
| ! | TTGAACACTTCTTTCTTTTC+AGG | - | Chr6:58012572-58012591 | None:intergenic | 30.0% |
| !! | TTTTAGGAATGTTTTGGATG+GGG | - | Chr6:58012525-58012544 | None:intergenic | 30.0% |
| !!! | ATAGTGGTGTCTTTTTTTTG+CGG | - | Chr6:58013461-58013480 | None:intergenic | 30.0% |
| !!! | GTTTTAGGAATGTTTTGGAT+GGG | - | Chr6:58012526-58012545 | None:intergenic | 30.0% |
| ATCCAATATTTGATTGGAGC+TGG | + | Chr6:58012980-58012999 | MsG0680033143.01.T01:CDS | 35.0% | |
| CATAATATATGCAAAGGTCC+GGG | + | Chr6:58013419-58013438 | MsG0680033143.01.T01:intron | 35.0% | |
| CCAAACATGGATAAACAAGT+TGG | + | Chr6:58012808-58012827 | MsG0680033143.01.T01:CDS | 35.0% | |
| GCATAATATATGCAAAGGTC+CGG | + | Chr6:58013418-58013437 | MsG0680033143.01.T01:intron | 35.0% | |
| GCCTTTAGATAACATTGTAG+TGG | - | Chr6:58012503-58012522 | None:intergenic | 35.0% | |
| TAGAGTTCTTGATTAGACGA+TGG | + | Chr6:58014016-58014035 | MsG0680033143.01.T01:CDS | 35.0% | |
| TGCACCTAGATTAAGAAAAC+TGG | + | Chr6:58014104-58014123 | MsG0680033143.01.T01:CDS | 35.0% | |
| TGTACACAAAACCCATGTAT+GGG | - | Chr6:58013669-58013688 | None:intergenic | 35.0% | |
| TTTATCCATGTTTGGTACGT+AGG | - | Chr6:58012803-58012822 | None:intergenic | 35.0% | |
| ! | AATCTTGCGATGCATCATTT+TGG | - | Chr6:58013884-58013903 | None:intergenic | 35.0% |
| ! | ACATGGATAAACAAGTTGGA+TGG | + | Chr6:58012812-58012831 | MsG0680033143.01.T01:CDS | 35.0% |
| ! | AGACATTGAGTGTGTCTTTT+GGG | - | Chr6:58012549-58012568 | None:intergenic | 35.0% |
| ! | ATAAACAAGTTGGATGGAGT+TGG | + | Chr6:58012818-58012837 | MsG0680033143.01.T01:CDS | 35.0% |
| ! | CCAACTTGTTTATCCATGTT+TGG | - | Chr6:58012811-58012830 | None:intergenic | 35.0% |
| ! | CGTTAGTTTGGCAAATGTAT+GGG | - | Chr6:58013174-58013193 | None:intergenic | 35.0% |
| ! | TCCATGTCTATTTTCTTCAG+CGG | - | Chr6:58012897-58012916 | None:intergenic | 35.0% |
| ! | TCGTTAGTTTGGCAAATGTA+TGG | - | Chr6:58013175-58013194 | None:intergenic | 35.0% |
| !!! | GATTATCTTGTGGTTTTGGT+CGG | + | Chr6:58012752-58012771 | MsG0680033143.01.T01:CDS | 35.0% |
| !!! | GGTTTTAGGAATGTTTTGGA+TGG | - | Chr6:58012527-58012546 | None:intergenic | 35.0% |
| !!! | TTGGGGTTTTAGGAATGTTT+TGG | - | Chr6:58012531-58012550 | None:intergenic | 35.0% |
| ACCGAAAACAACCCATACAT+GGG | + | Chr6:58013655-58013674 | MsG0680033143.01.T01:CDS | 40.0% | |
| ACCGCTGAAGAAAATAGACA+TGG | + | Chr6:58012893-58012912 | MsG0680033143.01.T01:CDS | 40.0% | |
| ATATTTGATTGGAGCTGGCA+TGG | + | Chr6:58012985-58013004 | MsG0680033143.01.T01:CDS | 40.0% | |
| ATGGAGATTGGAGAAGATTG+AGG | + | Chr6:58014035-58014054 | MsG0680033143.01.T01:CDS | 40.0% | |
| ATTGTTCATGGTGTAGGATG+TGG | + | Chr6:58013630-58013649 | MsG0680033143.01.T01:intron | 40.0% | |
| CTGCAGAAAAATGATCGAAG+AGG | - | Chr6:58013948-58013967 | None:intergenic | 40.0% | |
| CTTGATTAGACGATGGAGAT+TGG | + | Chr6:58014023-58014042 | MsG0680033143.01.T01:CDS | 40.0% | |
| CTTTGTGAGCTTAACTCAGT+TGG | + | Chr6:58013385-58013404 | MsG0680033143.01.T01:intron | 40.0% | |
| GAATGCATATGTGAGGATTG+TGG | + | Chr6:58013813-58013832 | MsG0680033143.01.T01:CDS | 40.0% | |
| GAGTCTGGCAACAAATTATG+TGG | - | Chr6:58012662-58012681 | None:intergenic | 40.0% | |
| GCTTCCAGATGATTATCTTG+TGG | + | Chr6:58012742-58012761 | MsG0680033143.01.T01:CDS | 40.0% | |
| GTGTACACAAAACCCATGTA+TGG | - | Chr6:58013670-58013689 | None:intergenic | 40.0% | |
| TACCGAAAACAACCCATACA+TGG | + | Chr6:58013654-58013673 | MsG0680033143.01.T01:CDS | 40.0% | |
| TGCCAGCTCCAATCAAATAT+TGG | - | Chr6:58012985-58013004 | None:intergenic | 40.0% | |
| TGGAGATTGGAGAAGATTGA+GGG | + | Chr6:58014036-58014055 | MsG0680033143.01.T01:CDS | 40.0% | |
| TTCACAAAGTGTGTTGCCAT+TGG | + | Chr6:58012610-58012629 | MsG0680033143.01.T01:CDS | 40.0% | |
| TTGTTCATGGTGTAGGATGT+GGG | + | Chr6:58013631-58013650 | MsG0680033143.01.T01:intron | 40.0% | |
| ! | AAAAATGATCGAAGAGGCGT+GGG | - | Chr6:58013942-58013961 | None:intergenic | 40.0% |
| ! | CACTTGATGGATGAACTCAT+CGG | - | Chr6:58012696-58012715 | None:intergenic | 40.0% |
| ! | GACATTGAGTGTGTCTTTTG+GGG | - | Chr6:58012548-58012567 | None:intergenic | 40.0% |
| ! | GAGACATTGAGTGTGTCTTT+TGG | - | Chr6:58012550-58012569 | None:intergenic | 40.0% |
| !! | ACCCATGTATGGGTTGTTTT+CGG | - | Chr6:58013659-58013678 | None:intergenic | 40.0% |
| !! | CTTCGATCATTTTTCTGCAG+TGG | + | Chr6:58013948-58013967 | MsG0680033143.01.T01:CDS | 40.0% |
| !!! | AGTGTGTCTTTTGGGGTTTT+AGG | - | Chr6:58012541-58012560 | None:intergenic | 40.0% |
| !!! | TGTCTTTTTTTTGCGGTGGT+CGG | - | Chr6:58013454-58013473 | None:intergenic | 40.0% |
| AAATGTGGCTCGCTCTTGAA+AGG | - | Chr6:58013695-58013714 | None:intergenic | 45.0% | |
| ATTGAGGGTTTGACAAGCGA+AGG | + | Chr6:58014051-58014070 | MsG0680033143.01.T01:CDS | 45.0% | |
| CAACAATATGCACCCATGCA+TGG | + | Chr6:58012474-58012493 | MsG0680033143.01.T01:CDS | 45.0% | |
| CATGCACAAGAGTTTGTGTG+TGG | + | Chr6:58014078-58014097 | MsG0680033143.01.T01:CDS | 45.0% | |
| CATGCACATATCAACTCGAC+CGG | - | Chr6:58012948-58012967 | None:intergenic | 45.0% | |
| CATTGCCTACGTACCAAACA+TGG | + | Chr6:58012795-58012814 | MsG0680033143.01.T01:CDS | 45.0% | |
| GAAAAATGATCGAAGAGGCG+TGG | - | Chr6:58013943-58013962 | None:intergenic | 45.0% | |
| GTCACGAGAATGCATATGTG+AGG | + | Chr6:58013806-58013825 | MsG0680033143.01.T01:CDS | 45.0% | |
| TCCATCATGCATCAAGTGAG+CGG | - | Chr6:58013914-58013933 | None:intergenic | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | - | Chr6:58013732-58013751 | None:intergenic | 45.0% | |
| TGAGTTCATCCATCAAGTGC+AGG | + | Chr6:58012697-58012716 | MsG0680033143.01.T01:CDS | 45.0% | |
| TGCACTCGTAACACGTATGT+GGG | - | Chr6:58013252-58013271 | None:intergenic | 45.0% | |
| TGGTTCAAGTCTCACACCAT+GGG | + | Chr6:58012850-58012869 | MsG0680033143.01.T01:CDS | 45.0% | |
| ! | ATTGTAGTGGAGTCCATGCA+TGG | - | Chr6:58012490-58012509 | None:intergenic | 45.0% |
| ! | TGATGGATGAACTCATCGGA+AGG | - | Chr6:58012692-58012711 | None:intergenic | 45.0% |
| ! | TTGTAGTGGAGTCCATGCAT+GGG | - | Chr6:58012489-58012508 | None:intergenic | 45.0% |
| !! | AAACTGGAAGAGCGTCTTGA+TGG | + | Chr6:58014120-58014139 | MsG0680033143.01.T01:CDS | 45.0% |
| !! | AACTGGAAGAGCGTCTTGAT+GGG | + | Chr6:58014121-58014140 | MsG0680033143.01.T01:CDS | 45.0% |
| !!! | GCGATGCATCATTTTGGCTA+TGG | - | Chr6:58013878-58013897 | None:intergenic | 45.0% |
| !!! | GTCTTTTTTTTGCGGTGGTC+GGG | - | Chr6:58013453-58013472 | None:intergenic | 45.0% |
| !!! | GTGGTGTCTTTTTTTTGCGG+TGG | - | Chr6:58013458-58013477 | None:intergenic | 45.0% |
| !!! | TATCTTGTGGTTTTGGTCGG+TGG | + | Chr6:58012755-58012774 | MsG0680033143.01.T01:CDS | 45.0% |
| CACATACGTGTTACGAGTGC+AGG | + | Chr6:58013251-58013270 | MsG0680033143.01.T01:intron | 50.0% | |
| CCATCATGCATCAAGTGAGC+GGG | - | Chr6:58013913-58013932 | None:intergenic | 50.0% | |
| CGAGCCACATTTGTGTCACA+CGG | + | Chr6:58013703-58013722 | MsG0680033143.01.T01:CDS | 50.0% | |
| CTCTCACTTGCACGCATATG+CGG | + | Chr6:58013760-58013779 | MsG0680033143.01.T01:CDS | 50.0% | |
| CTGCACTCGTAACACGTATG+TGG | - | Chr6:58013253-58013272 | None:intergenic | 50.0% | |
| CTGGTTCAAGTCTCACACCA+TGG | + | Chr6:58012849-58012868 | MsG0680033143.01.T01:CDS | 50.0% | |
| GTACGTAGGCAATGCTTCCT+CGG | - | Chr6:58012789-58012808 | None:intergenic | 50.0% | |
| GTTGCCATTGGTCAAACCTG+TGG | + | Chr6:58012622-58012641 | MsG0680033143.01.T01:CDS | 50.0% | |
| GTTGCCGTGTGACACAAATG+TGG | - | Chr6:58013710-58013729 | None:intergenic | 50.0% | |
| TCAAACCTGTGGAGGAATGC+TGG | + | Chr6:58012633-58012652 | MsG0680033143.01.T01:CDS | 50.0% | |
| TCCTCCACAGGTTTGACCAA+TGG | - | Chr6:58012629-58012648 | None:intergenic | 50.0% | |
| TCGGAAGGTAGTGATGAGTC+TGG | - | Chr6:58012677-58012696 | None:intergenic | 50.0% | |
| TCTCACTTGCACGCATATGC+GGG | + | Chr6:58013761-58013780 | MsG0680033143.01.T01:CDS | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | + | Chr6:58013961-58013980 | MsG0680033143.01.T01:CDS | 50.0% | |
| TTTGTGTCACACGGCAACCT+AGG | + | Chr6:58013712-58013731 | MsG0680033143.01.T01:CDS | 50.0% | |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | + | Chr6:58013733-58013752 | MsG0680033143.01.T01:CDS | 50.0% |
| ! | GTCTCACACCATGGGCTATA+TGG | + | Chr6:58012858-58012877 | MsG0680033143.01.T01:CDS | 50.0% |
| ! | TCTAGAAGTTGATCCCACCG+AGG | + | Chr6:58013843-58013862 | MsG0680033143.01.T01:CDS | 50.0% |
| ACACGGCAACCTAGGTAGGT+TGG | + | Chr6:58013720-58013739 | MsG0680033143.01.T01:CDS | 55.0% | |
| AGTTGATCCCACCGAGGCTA+TGG | + | Chr6:58013849-58013868 | MsG0680033143.01.T01:CDS | 55.0% | |
| CCCGCTCACTTGATGCATGA+TGG | + | Chr6:58013910-58013929 | MsG0680033143.01.T01:CDS | 55.0% | |
| CGCATATGCGTGCAAGTGAG+AGG | - | Chr6:58013762-58013781 | None:intergenic | 55.0% | |
| CTCAGCCGTTCGATCTCTCA+GGG | - | Chr6:58012723-58012742 | None:intergenic | 55.0% | |
| CTCGTGACGCTTCTCATCAG+CGG | - | Chr6:58013794-58013813 | None:intergenic | 55.0% | |
| GAGCGTGACCATATAGCCCA+TGG | - | Chr6:58012869-58012888 | None:intergenic | 55.0% | |
| GCCATTGGTCAAACCTGTGG+AGG | + | Chr6:58012625-58012644 | MsG0680033143.01.T01:CDS | 55.0% | |
| GGGCTATATGGTCACGCTCT+TGG | + | Chr6:58012870-58012889 | MsG0680033143.01.T01:CDS | 55.0% | |
| GGTGGTCGGGATTTGAATCC+CGG | - | Chr6:58013440-58013459 | None:intergenic | 55.0% | |
| TGTCACACGGCAACCTAGGT+AGG | + | Chr6:58013716-58013735 | MsG0680033143.01.T01:CDS | 55.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | - | Chr6:58013859-58013878 | None:intergenic | 60.0% | |
| CTCTCAGGGCCTGCACTTGA+TGG | - | Chr6:58012709-58012728 | None:intergenic | 60.0% | |
| GATGGAGTTGGCGACGAGAC+TGG | + | Chr6:58012830-58012849 | MsG0680033143.01.T01:CDS | 60.0% | |
| GCAGGCCCTGAGAGATCGAA+CGG | + | Chr6:58012715-58012734 | MsG0680033143.01.T01:CDS | 60.0% | |
| GCTCAGCCGTTCGATCTCTC+AGG | - | Chr6:58012724-58012743 | None:intergenic | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | - | Chr6:58013863-58013882 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | - | Chr6:58013860-58013879 | None:intergenic | 60.0% | |
| TGATCCCACCGAGGCTATGG+TGG | + | Chr6:58013852-58013871 | MsG0680033143.01.T01:CDS | 60.0% | |
| GGCTGCCAGCATTCCTCCAC+AGG | - | Chr6:58012641-58012660 | None:intergenic | 65.0% | |
| GGTCGGTGGCATGATCACCG+AGG | + | Chr6:58012769-58012788 | MsG0680033143.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 58012470 | 58014203 | 58012470 | ID=MsG0680033143.01;Name=MsG0680033143.01 |
| Chr6 | mRNA | 58012470 | 58014203 | 58012470 | ID=MsG0680033143.01.T01;Parent=MsG0680033143.01;Name=MsG0680033143.01.T01;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|364 |
| Chr6 | exon | 58012470 | 58013006 | 58012470 | ID=MsG0680033143.01.T01:exon:4017;Parent=MsG0680033143.01.T01 |
| Chr6 | exon | 58013646 | 58014203 | 58013646 | ID=MsG0680033143.01.T01:exon:4018;Parent=MsG0680033143.01.T01 |
| Chr6 | CDS | 58012470 | 58013006 | 58012470 | ID=MsG0680033143.01.T01:cds;Parent=MsG0680033143.01.T01 |
| Chr6 | CDS | 58013646 | 58014203 | 58013646 | ID=MsG0680033143.01.T01:cds;Parent=MsG0680033143.01.T01 |
| Gene Sequence |
| Protein sequence |
