AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024094.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024094.01.T01 MTR_5g005600 93.802 726 40 3 1 726 1 721 0.0 1368
MsG0580024094.01.T01 MTR_2g088470 52.482 705 306 10 26 721 48 732 0.0 698
MsG0580024094.01.T01 MTR_4g047800 51.485 707 307 11 30 721 44 729 0.0 685
MsG0580024094.01.T01 MTR_8g432540 42.934 743 375 14 14 721 78 806 0.0 580
MsG0580024094.01.T01 MTR_7g076080 42.817 710 379 12 30 721 74 774 0.0 565
MsG0580024094.01.T01 MTR_1g101280 39.155 710 387 13 44 721 54 750 1.65e-174 518
MsG0580024094.01.T01 MTR_2g101720 38.889 684 369 13 50 721 143 789 8.45e-158 476
MsG0580024094.01.T01 MTR_0198s0030 37.955 714 380 14 50 721 59 751 1.00e-155 470
MsG0580024094.01.T01 MTR_6g477820 36.351 718 392 16 46 721 29 723 4.45e-148 449
MsG0580024094.01.T01 MTR_5g029320 35.209 764 432 20 1 721 35 778 1.23e-142 437
MsG0580024094.01.T01 MTR_7g427710 35.546 723 349 21 31 721 1 638 1.21e-123 383
MsG0580024094.01.T01 MTR_2g030570 33.524 701 412 19 47 722 25 696 6.77e-111 352
MsG0580024094.01.T01 MTR_2g030600 32.946 689 427 17 46 722 24 689 1.26e-104 335
MsG0580024094.01.T01 MTR_2g030660 30.072 695 429 15 35 722 4 648 2.62e-85 283
MsG0580024094.01.T01 MTR_2g083350 33.019 530 295 11 234 721 20 531 6.96e-81 268
MsG0580024094.01.T01 MTR_2g083330 34.163 442 265 6 287 721 103 525 8.40e-78 260
MsG0580024094.01.T01 MTR_7g427690 35.238 420 224 13 214 616 38 426 3.64e-71 239
MsG0580024094.01.T01 MTR_7g427700 32.024 331 159 10 31 347 1 279 2.07e-37 145
MsG0580024094.01.T01 MTR_7g427700 38.750 160 76 4 575 721 281 431 1.21e-19 92.8
MsG0580024094.01.T01 MTR_0653s0020 36.548 197 101 5 417 609 1 177 2.27e-34 130
MsG0580024094.01.T01 MTR_2g030690 30.420 286 188 7 440 722 1 278 8.32e-27 111
MsG0580024094.01.T01 MTR_5g046040 39.683 126 74 2 44 167 31 156 1.81e-22 100
MsG0580024094.01.T01 MTR_1g105420 36.041 197 99 6 101 286 1 181 7.04e-21 92.0
MsG0580024094.01.T01 MTR_1g105420 73.171 41 10 1 348 387 171 211 4.24e-13 69.7
MsG0580024094.01.T01 MTR_7g027265 36.667 120 75 1 46 164 17 136 1.04e-20 89.4
MsG0580024094.01.T01 MTR_3g109800 21.108 758 412 27 50 724 21 675 6.21e-17 85.5
MsG0580024094.01.T01 MTR_3g109800 21.108 758 412 27 50 724 21 675 7.55e-17 85.5
MsG0580024094.01.T01 MTR_3g109800 21.108 758 412 27 50 724 21 675 1.12e-16 85.1
MsG0580024094.01.T01 MTR_6g027290 32.331 133 87 3 37 167 17 148 2.58e-15 75.1
MsG0580024094.01.T01 MTR_0653s0010 41.803 122 49 4 614 721 1 114 7.69e-15 71.6
MsG0580024094.01.T01 MTR_2g451350 35.385 130 83 1 243 371 1 130 8.59e-15 72.4
MsG0580024094.01.T01 MTR_7g027605 40.625 96 50 2 319 414 3 91 1.54e-14 70.1
MsG0580024094.01.T01 MTR_1g105425 44.595 74 41 0 19 92 79 152 1.54e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024094.01.T01 AT4G04890 55.316 696 284 10 39 721 54 735 0.0 753
MsG0580024094.01.T01 AT4G04890 55.316 696 284 10 39 721 54 735 0.0 753
MsG0580024094.01.T01 AT4G21750 54.432 722 280 13 39 725 54 761 0.0 753
MsG0580024094.01.T01 AT4G21750 54.432 722 280 13 39 725 54 761 0.0 753
MsG0580024094.01.T01 AT4G21750 54.432 722 280 13 39 725 54 761 0.0 753
MsG0580024094.01.T01 AT4G21750 54.432 722 280 13 39 725 54 761 0.0 753
MsG0580024094.01.T01 AT1G05230 50.143 698 313 10 30 721 48 716 0.0 674
MsG0580024094.01.T01 AT1G05230 50.143 698 313 10 30 721 48 716 0.0 674
MsG0580024094.01.T01 AT1G05230 50.143 698 313 10 30 721 48 716 0.0 674
MsG0580024094.01.T01 AT1G05230 50.143 698 313 10 30 721 48 716 0.0 674
MsG0580024094.01.T01 AT1G05230 50.143 698 313 10 30 721 48 716 0.0 674
MsG0580024094.01.T01 AT1G05230 50.143 698 313 10 30 721 48 716 0.0 674
MsG0580024094.01.T01 AT1G05230 50.143 698 313 10 30 721 48 716 0.0 674
MsG0580024094.01.T01 AT1G05230 50.143 698 313 10 30 721 48 716 0.0 674
MsG0580024094.01.T01 AT1G05230 50.143 698 313 10 30 721 48 716 0.0 674
MsG0580024094.01.T01 AT1G05230 50.143 698 313 10 30 721 48 716 0.0 674
MsG0580024094.01.T01 AT1G05230 50.143 698 311 11 30 721 48 714 0.0 668
MsG0580024094.01.T01 AT4G00730 41.989 724 369 15 21 721 103 798 0.0 539
MsG0580024094.01.T01 AT1G05230 48.537 581 267 9 30 604 48 602 0.0 538
MsG0580024094.01.T01 AT3G61150 39.867 750 369 17 22 721 86 803 1.35e-177 528
MsG0580024094.01.T01 AT2G32370 40.929 689 356 16 44 718 66 717 3.49e-161 483
MsG0580024094.01.T01 AT5G52170 38.352 704 360 12 30 721 37 678 2.23e-156 469
MsG0580024094.01.T01 AT5G52170 38.352 704 360 12 30 721 37 678 2.23e-156 469
MsG0580024094.01.T01 AT5G52170 38.156 705 365 12 30 721 37 683 9.34e-155 465
MsG0580024094.01.T01 AT1G73360 37.588 713 377 17 46 721 32 713 3.73e-146 444
MsG0580024094.01.T01 AT1G79840 37.554 695 369 17 42 721 40 684 2.26e-145 441
MsG0580024094.01.T01 AT1G79840 37.554 695 369 17 42 721 40 684 2.26e-145 441
MsG0580024094.01.T01 AT1G17920 38.484 686 379 11 50 721 25 681 3.41e-145 441
MsG0580024094.01.T01 AT1G17920 38.484 686 379 11 50 721 25 681 3.41e-145 441
MsG0580024094.01.T01 AT1G79840 37.554 695 369 17 42 721 98 742 6.90e-145 442
MsG0580024094.01.T01 AT1G79840 37.554 695 369 17 42 721 127 771 2.30e-144 441
MsG0580024094.01.T01 AT5G46880 34.583 720 420 20 37 721 103 806 1.34e-124 391
MsG0580024094.01.T01 AT5G46880 34.583 720 420 20 37 721 103 806 1.34e-124 391
MsG0580024094.01.T01 AT5G46880 34.583 720 420 20 37 721 103 806 1.34e-124 391
MsG0580024094.01.T01 AT1G79840 37.895 570 297 15 42 601 98 620 1.63e-119 372
MsG0580024094.01.T01 AT3G03260 34.072 722 402 24 30 718 11 691 6.91e-114 360
MsG0580024094.01.T01 AT4G17710 34.195 696 374 19 39 722 81 704 2.90e-111 353
MsG0580024094.01.T01 AT4G25530 32.386 704 428 16 25 721 20 682 7.30e-109 346
MsG0580024094.01.T01 AT4G00730 38.901 473 248 10 21 475 103 552 2.27e-99 318
MsG0580024094.01.T01 AT5G17320 31.623 721 433 23 38 721 18 715 5.70e-94 308
MsG0580024094.01.T01 AT1G34650 30.986 710 426 19 51 721 21 705 6.07e-88 291
MsG0580024094.01.T01 AT1G79840 38.739 444 218 13 42 476 98 496 7.57e-88 286
MsG0580024094.01.T01 AT3G03260 33.215 563 322 20 30 573 11 538 6.40e-81 268
MsG0580024094.01.T01 AT5G07260 26.165 558 329 22 112 662 10 491 9.09e-30 125
MsG0580024094.01.T01 AT5G07260 26.079 556 327 21 112 662 10 486 3.80e-29 123

Find 186 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCCAGCTTGAAAGGTTTA+TGG 0.151518 5:+766583 MsG0580024094.01.T01:intron
ATTTCACGCTCTTCTGATTT+TGG 0.162352 5:+766674 MsG0580024094.01.T01:CDS
GTTAATTCTGGACTTGCTTT+TGG 0.195569 5:+767877 MsG0580024094.01.T01:CDS
AACTGCATCCAGATGGAATA+TGG 0.242195 5:+767533 MsG0580024094.01.T01:CDS
TCTCTTCTCTGAGCATCATT+AGG 0.259035 5:-765546 None:intergenic
ATTTCAAATGGTCGTGATTC+TGG 0.286392 5:+768493 MsG0580024094.01.T01:CDS
TAGCTCCTCAGTACAGATTA+AGG 0.286789 5:+766757 MsG0580024094.01.T01:CDS
TATAAACCTCTAGTTAATTC+TGG 0.304749 5:+767865 MsG0580024094.01.T01:CDS
ACAACCAACGTTCCAGAAAA+AGG 0.314262 5:+765343 MsG0580024094.01.T01:CDS
ACCCAACGCAAATCAAGTTT+TGG 0.325446 5:+765592 MsG0580024094.01.T01:CDS
AACACCCTCCTTGGAGGAAC+TGG 0.338188 5:-768293 None:intergenic
GAGAATTGCACTGATGTAAC+TGG 0.338466 5:+768679 MsG0580024094.01.T01:CDS
AAGACCTTAGTGAGACCATT+TGG 0.340133 5:-767673 None:intergenic
CGTCTTACTCTGCTTCCTTC+CGG 0.342730 5:+768772 MsG0580024094.01.T01:CDS
ACAACCTCCGGTCCGTTTCC+AGG 0.348649 5:-768182 None:intergenic
GTTTACAGTATCTCACAAAA+TGG 0.349194 5:-767513 None:intergenic
CGCCAGCTTGAAAGGTTTAT+GGG 0.349672 5:+766584 MsG0580024094.01.T01:intron
CTCTTCTCTGAGCATCATTA+GGG 0.354899 5:-765545 None:intergenic
CCAGATCCGACATTCATAAT+TGG 0.363963 5:-768835 None:intergenic
GAGAATCTCAGTGACATAAT+TGG 0.367087 5:-766879 None:intergenic
GACTTGAGTCGCCGCCATTC+AGG 0.368603 5:-768750 None:intergenic
AAGTAGCCTCCATGTTCATT+TGG 0.369354 5:-765302 None:intergenic
TTATATAGGTTCAAACTGAT+AGG 0.374562 5:+766225 MsG0580024094.01.T01:intron
TCAGCAACAAATTGATGAAA+TGG 0.376687 5:+765383 MsG0580024094.01.T01:CDS
TGGAACGTTGGTTGTGTTGT+TGG 0.379260 5:-765335 None:intergenic
ACTTACAGTGATACGAAATA+AGG 0.385266 5:-768527 None:intergenic
ACCAAACTGGCTAGGACATA+TGG 0.389902 5:+766836 MsG0580024094.01.T01:CDS
ATTGTTGGATGATGTTATAT+TGG 0.393371 5:-766639 None:intergenic
ATTGTAGAGCTTGCTGTTGT+TGG 0.393723 5:+766800 MsG0580024094.01.T01:CDS
GAGATGAAGTTAATAGATAC+AGG 0.396482 5:+766288 MsG0580024094.01.T01:CDS
TCCACATGCAAGGCTAGCTC+TGG 0.401494 5:+768903 MsG0580024094.01.T01:CDS
CGGCGGTATAGTTCATGAAT+TGG 0.401952 5:+768465 MsG0580024094.01.T01:CDS
CCAATTATGAATGTCGGATC+TGG 0.406349 5:+768835 MsG0580024094.01.T01:CDS
ACACTTGAAGTCCTTTCAAC+TGG 0.406882 5:+767301 MsG0580024094.01.T01:CDS
AAGTATTTCCCAAGGGCTAA+TGG 0.411663 5:+766920 MsG0580024094.01.T01:CDS
AGAGAAGAGAGCTGAGCCTT+CGG 0.419978 5:+765559 MsG0580024094.01.T01:CDS
AGCTTTAATCCCAATGTGTT+GGG 0.429957 5:-766944 None:intergenic
CTCTGAGCATCATTAGGGTT+AGG 0.434546 5:-765540 None:intergenic
AGACCTTAGTGAGACCATTT+GGG 0.436761 5:-767672 None:intergenic
GCATTTGTTATACACCCATC+TGG 0.446371 5:-768808 None:intergenic
GACTGGAGAATGCTCTCTTA+AGG 0.451510 5:+766390 MsG0580024094.01.T01:CDS
TCCATATGTCCTAGCCAGTT+TGG 0.452823 5:-766837 None:intergenic
TTCAGGATTTCATGCATTGT+AGG 0.456298 5:-768733 None:intergenic
GCCACTACCCATATTCCATC+TGG 0.457430 5:-767541 None:intergenic
AGAAAATCAAACACCCTCCT+TGG 0.457924 5:-768302 None:intergenic
ACCAAAACTTGATTTGCGTT+GGG 0.459278 5:-765593 None:intergenic
TAATGAAATTAGATGCCATT+AGG 0.460205 5:-768991 None:intergenic
TGACATTTCCCCAGCGGTAG+TGG 0.460740 5:-766348 None:intergenic
AAAACTGCAGTGATGCCTAA+TGG 0.465524 5:+768976 MsG0580024094.01.T01:CDS
AGAGAGCTGAGCCTTCGGAC+TGG 0.466205 5:+765564 MsG0580024094.01.T01:CDS
AGAACATGTATCATCAGAAT+AGG 0.466666 5:+765253 MsG0580024094.01.T01:CDS
GAGAGCTGAGCCTTCGGACT+GGG 0.469640 5:+765565 MsG0580024094.01.T01:CDS
GCTAGCTTTAGTACAAGTAT+TGG 0.471031 5:+768128 MsG0580024094.01.T01:CDS
TGTTGGGACCATTAGCCCTT+GGG 0.476328 5:-766928 None:intergenic
ATGAGGATATCTACAAGATC+AGG 0.482347 5:-767007 None:intergenic
GAATTGGCTCACATTTCAAA+TGG 0.482575 5:+768481 MsG0580024094.01.T01:CDS
TTGCTGAGTGTGGCGGCGAT+AGG 0.483290 5:-765367 None:intergenic
GCTAATGGTCCCAACACATT+GGG 0.483917 5:+766935 MsG0580024094.01.T01:CDS
ACATTGGGATTAAAGCTTGA+GGG 0.484683 5:+766950 MsG0580024094.01.T01:CDS
AGCTCCTCAGTACAGATTAA+GGG 0.487431 5:+766758 MsG0580024094.01.T01:CDS
AACCAAAACTTGATTTGCGT+TGG 0.487544 5:-765594 None:intergenic
AGAGCTTGCTGTTGTTGGAA+TGG 0.487738 5:+766805 MsG0580024094.01.T01:CDS
GTTCTTCTACAACACATGCT+TGG 0.487768 5:+768150 MsG0580024094.01.T01:CDS
AAACGGCCACCAACGTTCCA+CGG 0.489293 5:+767953 MsG0580024094.01.T01:CDS
AATGGCTGAACTGACCAAAC+TGG 0.494651 5:+766823 MsG0580024094.01.T01:CDS
TGACGATCAGCAGCTAAGAC+TGG 0.495757 5:+766373 MsG0580024094.01.T01:CDS
AAGCTTTAATCCCAATGTGT+TGG 0.498683 5:-766945 None:intergenic
CGAGAGTCTGCAGGATCTGT+TGG 0.502957 5:-766614 None:intergenic
TTTGGCTTCCAGTTCCTCCA+AGG 0.503857 5:+768285 MsG0580024094.01.T01:CDS
GTCATGACCATTACAACCTC+CGG 0.508691 5:-768194 None:intergenic
AAATGTAGAAGTTGATGATC+AGG 0.509315 5:+767828 MsG0580024094.01.T01:CDS
AATAACATGAGTGCTATTGT+TGG 0.512062 5:-766654 None:intergenic
TATATAGGTTCAAACTGATA+GGG 0.512992 5:+766226 MsG0580024094.01.T01:intron
GTAGGAGAGGCTTTCACTGT+TGG 0.513732 5:+766734 MsG0580024094.01.T01:CDS
GCTTCCAGTTCCTCCAAGGA+GGG 0.515083 5:+768289 MsG0580024094.01.T01:CDS
ACTGCATCCAGATGGAATAT+GGG 0.521116 5:+767534 MsG0580024094.01.T01:CDS
GAAGTCCTTTCAACTGGAGT+GGG 0.523037 5:+767307 MsG0580024094.01.T01:CDS
ATTGAATCTTGCGGAAAGGT+TGG 0.528383 5:+768103 MsG0580024094.01.T01:CDS
AACGGCCACCAACGTTCCAC+GGG 0.530317 5:+767954 MsG0580024094.01.T01:CDS
TATGTCACTGAGATTCTCAA+TGG 0.532052 5:+766884 MsG0580024094.01.T01:CDS
TGGACAAAGGTACCTGGAAA+CGG 0.533786 5:+768170 MsG0580024094.01.T01:CDS
AAATCAAACACCCTCCTTGG+AGG 0.534430 5:-768299 None:intergenic
TGCATTGTAGGTATTTGCAC+AGG 0.535629 5:-768721 None:intergenic
ATTAGTACTTACCACTTGCA+AGG 0.535950 5:-767347 None:intergenic
TTGATTGAGACACTCCCAAA+TGG 0.537043 5:+767658 MsG0580024094.01.T01:CDS
GAATGCTCTCTTAAGGAAAG+AGG 0.538971 5:+766397 MsG0580024094.01.T01:CDS
CATCAATTTGTTGCTGAGTG+TGG 0.539652 5:-765377 None:intergenic
CGAGTAGGAACATGTGGGGA+GGG 0.539762 5:-767484 None:intergenic
GTGTTGGGACCATTAGCCCT+TGG 0.540053 5:-766929 None:intergenic
TGTGGAAGTTCCACTACCGC+TGG 0.541115 5:+766338 MsG0580024094.01.T01:CDS
GGCTAATGGTCCCAACACAT+TGG 0.544303 5:+766934 MsG0580024094.01.T01:CDS
CATGCTTGGACAAAGGTACC+TGG 0.544698 5:+768164 MsG0580024094.01.T01:CDS
TGAAGTCCTTTCAACTGGAG+TGG 0.545864 5:+767306 MsG0580024094.01.T01:CDS
AAACGGACCGGAGGTTGTAA+TGG 0.547300 5:+768187 MsG0580024094.01.T01:CDS
ATTATGAATGTCGGATCTGG+AGG 0.550174 5:+768838 MsG0580024094.01.T01:CDS
GGCTTCCAGTTCCTCCAAGG+AGG 0.551888 5:+768288 MsG0580024094.01.T01:CDS
TACCTCCCACTCCAGTTGAA+AGG 0.552733 5:-767312 None:intergenic
GATGGGTGTATAACAAATGC+AGG 0.554349 5:+768811 MsG0580024094.01.T01:CDS
TACTGTAAACTGCATCCAGA+TGG 0.557363 5:+767526 MsG0580024094.01.T01:CDS
TACAACACATGCTTGGACAA+AGG 0.558020 5:+768157 MsG0580024094.01.T01:CDS
CACATTGGGATTAAAGCTTG+AGG 0.558168 5:+766949 MsG0580024094.01.T01:CDS
GCACTTAGCACTACACTGAC+GGG 0.561320 5:-768251 None:intergenic
GAACAGGCGCACTTCGCTGA+AGG 0.561506 5:+765620 MsG0580024094.01.T01:CDS
AGCACTTAGCACTACACTGA+CGG 0.563954 5:-768252 None:intergenic
AGAATCAACTATAATCTGAA+AGG 0.564272 5:-768878 None:intergenic
CAGTGGGATATTCTCTCCGC+CGG 0.564704 5:+768445 MsG0580024094.01.T01:intron
CTGAACTGACCAAACTGGCT+AGG 0.569467 5:+766828 MsG0580024094.01.T01:CDS
GAAAAGTATATTGAATCTTG+CGG 0.569980 5:+768094 MsG0580024094.01.T01:CDS
GTGGAAGTTCCACTACCGCT+GGG 0.571737 5:+766339 MsG0580024094.01.T01:CDS
AATTGGTGGGAAGCCAAAGA+GGG 0.573774 5:-766862 None:intergenic
GTTACCACATGCAACGTATG+TGG 0.576120 5:+766320 MsG0580024094.01.T01:CDS
AATCTCAGTGACATAATTGG+TGG 0.578666 5:-766876 None:intergenic
AGGGTCTTAATGAGAAGCAA+AGG 0.578872 5:+766777 MsG0580024094.01.T01:CDS
GGAGTTGCTGGTGGTAACAA+TGG 0.581415 5:+766695 MsG0580024094.01.T01:CDS
TGATCTTGTAGATATCCTCA+TGG 0.582197 5:+767009 MsG0580024094.01.T01:CDS
GCAGGACCAATTATGAATGT+CGG 0.584913 5:+768829 MsG0580024094.01.T01:CDS
ACAACCAGAGGGTCTTCTGT+TGG 0.585992 5:-767635 None:intergenic
ATGTTCCCGTGGAACGTTGG+TGG 0.586357 5:-767959 None:intergenic
AGAACCAACAGAAGACCCTC+TGG 0.588399 5:+767631 MsG0580024094.01.T01:CDS
AACGTTCCACGGGAACATCA+TGG 0.588608 5:+767964 MsG0580024094.01.T01:CDS
TGATCAAGAACACTGTGGAA+AGG 0.589920 5:+768950 MsG0580024094.01.T01:CDS
GAGTAGGAACATGTGGGGAG+GGG 0.590439 5:-767483 None:intergenic
TTGATTCTATTCCACATGCA+AGG 0.590966 5:+768893 MsG0580024094.01.T01:CDS
ATATTGGCACGAGAGTCTGC+AGG 0.595802 5:-766623 None:intergenic
GTATATTGAATCTTGCGGAA+AGG 0.597531 5:+768099 MsG0580024094.01.T01:CDS
GTCCTTTCAACTGGAGTGGG+AGG 0.597763 5:+767310 MsG0580024094.01.T01:CDS
CCACATGCAAGGCTAGCTCT+GGG 0.598313 5:+768904 MsG0580024094.01.T01:CDS
AATACATGAAGTATTTCCCA+AGG 0.599100 5:+766912 MsG0580024094.01.T01:CDS
ATCTCAGTGACATAATTGGT+GGG 0.600678 5:-766875 None:intergenic
AAAGGTACCTGGAAACGGAC+CGG 0.603908 5:+768175 MsG0580024094.01.T01:CDS
CAATTTGTTGCTGAGTGTGG+CGG 0.605203 5:-765374 None:intergenic
CACTGAGATTCTCAATGGAG+AGG 0.605470 5:+766889 MsG0580024094.01.T01:CDS
TGTTGCATTTAACAGATGCA+AGG 0.605749 5:-767572 None:intergenic
ACAATGCATGAAATCCTGAA+TGG 0.606726 5:+768736 MsG0580024094.01.T01:CDS
CAATTCATGAACTATACCGC+CGG 0.609707 5:-768464 None:intergenic
ACTCCCAAATGGTCTCACTA+AGG 0.610306 5:+767669 MsG0580024094.01.T01:CDS
TAATTGGTGGGAAGCCAAAG+AGG 0.613117 5:-766863 None:intergenic
GGAGCACACCACCGCATGGT+AGG 0.614498 5:+766716 MsG0580024094.01.T01:CDS
ACGAGTAGGAACATGTGGGG+AGG 0.617756 5:-767485 None:intergenic
ACAGTGAGATTGACTCCGGA+GGG 0.618021 5:+768068 MsG0580024094.01.T01:intron
TGTAGATATCCTCATGGATG+TGG 0.622507 5:+767015 MsG0580024094.01.T01:CDS
ATGTACAGTGAGATTGACTC+CGG 0.623201 5:+768064 MsG0580024094.01.T01:intron
TTGGGTCTAACCCAGTCCGA+AGG 0.623750 5:-765575 None:intergenic
GCAAGTCCAGAATTAACTAG+AGG 0.625489 5:-767871 None:intergenic
AGATGAAGTTAATAGATACA+GGG 0.626082 5:+766289 MsG0580024094.01.T01:CDS
TCCAGATGGAATATGGGTAG+TGG 0.628113 5:+767540 MsG0580024094.01.T01:CDS
AGAAGCAAACCAAATGAACA+TGG 0.628253 5:+765293 MsG0580024094.01.T01:CDS
ACACCACCGCATGGTAGGAG+AGG 0.632377 5:+766721 MsG0580024094.01.T01:CDS
CCCAGAGCTAGCCTTGCATG+TGG 0.637254 5:-768904 None:intergenic
TGGGATATTCTCTCCGCCGG+CGG 0.644828 5:+768448 MsG0580024094.01.T01:CDS
ATTGGTGGGAAGCCAAAGAG+GGG 0.648389 5:-766861 None:intergenic
TTATGAATGTCGGATCTGGA+GGG 0.649910 5:+768839 MsG0580024094.01.T01:CDS
AAGCCTCTCCTACCATGCGG+TGG 0.649944 5:-766724 None:intergenic
CAATGGAGCACACCACCGCA+TGG 0.649965 5:+766712 MsG0580024094.01.T01:CDS
AGAATTGCACTGATGTAACT+GGG 0.652163 5:+768680 MsG0580024094.01.T01:CDS
ATGATGTTCCCGTGGAACGT+TGG 0.653734 5:-767962 None:intergenic
TACAGTGAGATTGACTCCGG+AGG 0.655167 5:+768067 MsG0580024094.01.T01:intron
TATATACCATGATGTTCCCG+TGG 0.660275 5:-767970 None:intergenic
CTACGATGGAGCCTTGCAAG+TGG 0.661414 5:+767336 MsG0580024094.01.T01:CDS
TGTCTCAATCAAACAACCAG+AGG 0.663405 5:-767647 None:intergenic
TTTGACGAGTAGGAACATGT+GGG 0.667790 5:-767489 None:intergenic
GTCTCAATCAAACAACCAGA+GGG 0.671321 5:-767646 None:intergenic
ATGAAGTTAATAGATACAGG+GGG 0.672309 5:+766291 MsG0580024094.01.T01:CDS
AAATTCAGAGCAGAGTGATG+TGG 0.672413 5:+768645 MsG0580024094.01.T01:CDS
GGAGTGGGAGGTAACTACGA+TGG 0.675779 5:+767322 MsG0580024094.01.T01:CDS
GATGAAGTTAATAGATACAG+GGG 0.679151 5:+766290 MsG0580024094.01.T01:CDS
TGAGGGTTCGAAAGAATCCG+TGG 0.680929 5:+766967 MsG0580024094.01.T01:CDS
ACTTCCACATACGTTGCATG+TGG 0.681040 5:-766324 None:intergenic
AAGACCCTTAATCTGTACTG+AGG 0.682265 5:-766762 None:intergenic
TGGAAGTTCCACTACCGCTG+GGG 0.684408 5:+766340 MsG0580024094.01.T01:CDS
ATGCATGAAATCCTGAATGG+CGG 0.684425 5:+768739 MsG0580024094.01.T01:CDS
TGTAGAAGTTGATGATCAGG+TGG 0.686691 5:+767831 MsG0580024094.01.T01:CDS
TTGACGAGTAGGAACATGTG+GGG 0.689635 5:-767488 None:intergenic
TTGGTGGGAAGCCAAAGAGG+GGG 0.695051 5:-766860 None:intergenic
ATACATGAAGTATTTCCCAA+GGG 0.695847 5:+766913 MsG0580024094.01.T01:CDS
AGCATTAATCATGACCACCA+CGG 0.701180 5:-766984 None:intergenic
GGTACCTGGAAACGGACCGG+AGG 0.704720 5:+768178 MsG0580024094.01.T01:CDS
AGCAAACCAAATGAACATGG+AGG 0.714730 5:+765296 MsG0580024094.01.T01:CDS
CACTTTGATCAAGAACACTG+TGG 0.719780 5:+768945 MsG0580024094.01.T01:CDS
TTCATGAACTATACCGCCGG+CGG 0.721861 5:-768461 None:intergenic
GTCATGTGACATTTCCCCAG+CGG 0.729104 5:-766354 None:intergenic
CTTGATCAAAGTGTTAACAG+TGG 0.736197 5:-768935 None:intergenic
AATGACTCACCACATCCATG+AGG 0.740230 5:-767024 None:intergenic
GGGTTCGAAAGAATCCGTGG+TGG 0.741743 5:+766970 MsG0580024094.01.T01:CDS
TGAAGTTAATAGATACAGGG+GGG 0.744765 5:+766292 MsG0580024094.01.T01:CDS
TGAAAGCCTCTCCTACCATG+CGG 0.748941 5:-766727 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTAATAATAATATAAA+TGG - Chr5:767228-767247 None:intergenic 0.0%
!! TATTTAAAAAAAAAAAAAAA+AGG - Chr5:767997-768016 None:intergenic 0.0%
!! AAGTTATGTAAAATTAAAAT+TGG + Chr5:768546-768565 MsG0580024094.01.T01:intron 10.0%
!! TCAGATAAAATATATAAAAA+TGG - Chr5:765420-765439 None:intergenic 10.0%
!! TTAATAATAATATAAATGGA+GGG - Chr5:767224-767243 None:intergenic 10.0%
!! TTAATAATAGTTTATAATGT+TGG + Chr5:767725-767744 MsG0580024094.01.T01:intron 10.0%
!! TTTAATAATAATATAAATGG+AGG - Chr5:767225-767244 None:intergenic 10.0%
!!! AATAATATTCTAAAAATACT+TGG - Chr5:767145-767164 None:intergenic 10.0%
!!! TTTATTTTAAAAAAGAACAT+TGG + Chr5:767167-767186 MsG0580024094.01.T01:intron 10.0%
!! AAACATTAATGCAAATAATA+AGG - Chr5:767078-767097 None:intergenic 15.0%
!! ATATTTAATTGAATTTACAG+TGG + Chr5:768428-768447 MsG0580024094.01.T01:intron 15.0%
!! ATTATTAGTGTTTCAAATTT+GGG - Chr5:766017-766036 None:intergenic 15.0%
!! TATTATTAGTGTTTCAAATT+TGG - Chr5:766018-766037 None:intergenic 15.0%
!! TATTTAATTGAATTTACAGT+GGG + Chr5:768429-768448 MsG0580024094.01.T01:intron 15.0%
!!! ATTAATATTATTTTAGGTGA+AGG - Chr5:767710-767729 None:intergenic 15.0%
!!! ATTAATTAAATGCTTCTTTT+CGG + Chr5:766170-766189 MsG0580024094.01.T01:intron 15.0%
!!! ATTATTTTTCTTTGTAACAT+AGG - Chr5:765832-765851 None:intergenic 15.0%
!!! GTATATTAATTTTTTGAACT+TGG + Chr5:765483-765502 MsG0580024094.01.T01:intron 15.0%
!! TTATTAGTGTTTCAAATTTG+GGG - Chr5:766016-766035 None:intergenic 20.0%
!!! AAATTTGTTTTCAGAATCAA+TGG + Chr5:767242-767261 MsG0580024094.01.T01:intron 20.0%
!!! AATGTTGGATTATTTTAATG+TGG + Chr5:767740-767759 MsG0580024094.01.T01:intron 20.0%
!!! TATGTAAGAGTTGATAATAA+TGG - Chr5:765761-765780 None:intergenic 20.0%
! AACAAAAAATTACATGCAGT+TGG - Chr5:765655-765674 None:intergenic 25.0%
! AACATAGGTGATAAATTTAG+AGG - Chr5:765817-765836 None:intergenic 25.0%
! AGAATCAACTATAATCTGAA+AGG - Chr5:768881-768900 None:intergenic 25.0%
! AGATGAAGTTAATAGATACA+GGG + Chr5:766289-766308 MsG0580024094.01.T01:CDS 25.0%
! ATGATGCAATCATAATATTG+CGG - Chr5:765990-766009 None:intergenic 25.0%
! ATTGTTGGATGATGTTATAT+TGG - Chr5:766642-766661 None:intergenic 25.0%
! GCATTAATGTTTCAAAAACT+TGG + Chr5:767086-767105 MsG0580024094.01.T01:intron 25.0%
! TAATAAGGCTTAGAAAATGT+TGG - Chr5:767063-767082 None:intergenic 25.0%
! TATAAACCTCTAGTTAATTC+TGG + Chr5:767865-767884 MsG0580024094.01.T01:CDS 25.0%
! TATATAGGTTCAAACTGATA+GGG + Chr5:766226-766245 MsG0580024094.01.T01:intron 25.0%
! TTATATAGGTTCAAACTGAT+AGG + Chr5:766225-766244 MsG0580024094.01.T01:intron 25.0%
! TTATTTACATTGCACTTCAA+CGG + Chr5:765933-765952 MsG0580024094.01.T01:intron 25.0%
!! CTTTACTTGCTCTATATTTT+TGG + Chr5:765461-765480 MsG0580024094.01.T01:intron 25.0%
!! GAAAAGTATATTGAATCTTG+CGG + Chr5:768094-768113 MsG0580024094.01.T01:CDS 25.0%
!!! GTTGTCTTGTTTTTTTAAAC+AGG + Chr5:767792-767811 MsG0580024094.01.T01:intron 25.0%
!!! GTTTTTTTAAACAGGTTACA+TGG + Chr5:767800-767819 MsG0580024094.01.T01:intron 25.0%
!!! TGATCGTCTTGTTTTTAAAA+CGG + Chr5:767936-767955 MsG0580024094.01.T01:CDS 25.0%
AATTGATGAAATGGATACGT+AGG + Chr5:765392-765411 MsG0580024094.01.T01:intron 30.0%
ACTTACAGTGATACGAAATA+AGG - Chr5:768530-768549 None:intergenic 30.0%
AGAACATGTATCATCAGAAT+AGG + Chr5:765253-765272 MsG0580024094.01.T01:CDS 30.0%
ATGAAGTTAATAGATACAGG+GGG + Chr5:766291-766310 MsG0580024094.01.T01:CDS 30.0%
GAGATGAAGTTAATAGATAC+AGG + Chr5:766288-766307 MsG0580024094.01.T01:CDS 30.0%
GATGAAGTTAATAGATACAG+GGG + Chr5:766290-766309 MsG0580024094.01.T01:CDS 30.0%
GTTTACAGTATCTCACAAAA+TGG - Chr5:767516-767535 None:intergenic 30.0%
TCAGCAACAAATTGATGAAA+TGG + Chr5:765383-765402 MsG0580024094.01.T01:CDS 30.0%
! AATAACATGAGTGCTATTGT+TGG - Chr5:766657-766676 None:intergenic 30.0%
! AATACATGAAGTATTTCCCA+AGG + Chr5:766912-766931 MsG0580024094.01.T01:CDS 30.0%
! AATATACTTTTCTTTCCCTC+CGG - Chr5:768086-768105 None:intergenic 30.0%
! AATTAAATGCTTCTTTTCGG+CGG + Chr5:766173-766192 MsG0580024094.01.T01:intron 30.0%
! ATACATGAAGTATTTCCCAA+GGG + Chr5:766913-766932 MsG0580024094.01.T01:CDS 30.0%
! CAATGGTCAAATATGTTTTG+CGG + Chr5:767259-767278 MsG0580024094.01.T01:CDS 30.0%
!! AAATGTAGAAGTTGATGATC+AGG + Chr5:767828-767847 MsG0580024094.01.T01:CDS 30.0%
!! TTCTTGATGTGATTTTGATG+TGG - Chr5:765237-765256 None:intergenic 30.0%
AATCTCAGTGACATAATTGG+TGG - Chr5:766879-766898 None:intergenic 35.0%
ACAATGCATGAAATCCTGAA+TGG + Chr5:768736-768755 MsG0580024094.01.T01:CDS 35.0%
ACATTGGGATTAAAGCTTGA+GGG + Chr5:766950-766969 MsG0580024094.01.T01:CDS 35.0%
AGAAGCAAACCAAATGAACA+TGG + Chr5:765293-765312 MsG0580024094.01.T01:CDS 35.0%
ATCTCAGTGACATAATTGGT+GGG - Chr5:766878-766897 None:intergenic 35.0%
ATCTGGAAAAATAGCGAATC+CGG - Chr5:768794-768813 None:intergenic 35.0%
ATGAGGATATCTACAAGATC+AGG - Chr5:767010-767029 None:intergenic 35.0%
ATTAGTACTTACCACTTGCA+AGG - Chr5:767350-767369 None:intergenic 35.0%
ATTTCAAATGGTCGTGATTC+TGG + Chr5:768493-768512 MsG0580024094.01.T01:CDS 35.0%
CAATCATAATATTGCGGTTG+CGG - Chr5:765984-766003 None:intergenic 35.0%
GAAAATCGTAACAAACGATG+AGG - Chr5:766425-766444 None:intergenic 35.0%
GAGAATCTCAGTGACATAAT+TGG - Chr5:766882-766901 None:intergenic 35.0%
GATGACTAAATAGTCTGTTG+CGG + Chr5:765858-765877 MsG0580024094.01.T01:intron 35.0%
GCATAACATGAAACTGCATT+AGG - Chr5:765884-765903 None:intergenic 35.0%
GTATATTGAATCTTGCGGAA+AGG + Chr5:768099-768118 MsG0580024094.01.T01:CDS 35.0%
TATGTCACTGAGATTCTCAA+TGG + Chr5:766884-766903 MsG0580024094.01.T01:CDS 35.0%
TGAAGTTAATAGATACAGGG+GGG + Chr5:766292-766311 MsG0580024094.01.T01:CDS 35.0%
TGATCTTGTAGATATCCTCA+TGG + Chr5:767009-767028 MsG0580024094.01.T01:CDS 35.0%
TGTTGCATTTAACAGATGCA+AGG - Chr5:767575-767594 None:intergenic 35.0%
TTCAGGATTTCATGCATTGT+AGG - Chr5:768736-768755 None:intergenic 35.0%
TTGATTCTATTCCACATGCA+AGG + Chr5:768893-768912 MsG0580024094.01.T01:CDS 35.0%
! AAGCTTTAATCCCAATGTGT+TGG - Chr5:766948-766967 None:intergenic 35.0%
! AGAATTGCACTGATGTAACT+GGG + Chr5:768680-768699 MsG0580024094.01.T01:CDS 35.0%
! AGCTTTAATCCCAATGTGTT+GGG - Chr5:766947-766966 None:intergenic 35.0%
! ATTTCACGCTCTTCTGATTT+TGG + Chr5:766674-766693 MsG0580024094.01.T01:CDS 35.0%
! CTTGATCAAAGTGTTAACAG+TGG - Chr5:768938-768957 None:intergenic 35.0%
! GAATTGGCTCACATTTCAAA+TGG + Chr5:768481-768500 MsG0580024094.01.T01:CDS 35.0%
!! AACCAAAACTTGATTTGCGT+TGG - Chr5:765597-765616 None:intergenic 35.0%
!! ACCAAAACTTGATTTGCGTT+GGG - Chr5:765596-765615 None:intergenic 35.0%
!! GCTAGCTTTAGTACAAGTAT+TGG + Chr5:768128-768147 MsG0580024094.01.T01:CDS 35.0%
!! GTTAATTCTGGACTTGCTTT+TGG + Chr5:767877-767896 MsG0580024094.01.T01:CDS 35.0%
!! TAAGTGCTGCTACTTCTTTT+TGG + Chr5:768267-768286 MsG0580024094.01.T01:CDS 35.0%
!! TTTTAGGTGAAGGTGAAATG+TGG - Chr5:767700-767719 None:intergenic 35.0%
!!! ACAAAATGGTTTTGACGAGT+AGG - Chr5:767502-767521 None:intergenic 35.0%
!!! GATTCGCTATTTTTCCAGAT+GGG + Chr5:768794-768813 MsG0580024094.01.T01:CDS 35.0%
!!! TCAAGTTTTGGTTTCAGAAC+AGG + Chr5:765604-765623 MsG0580024094.01.T01:CDS 35.0%
AAAAAAACCGCCAGCTTGAA+AGG + Chr5:766576-766595 MsG0580024094.01.T01:intron 40.0%
AAAACTGCAGTGATGCCTAA+TGG + Chr5:768976-768995 MsG0580024094.01.T01:CDS 40.0%
AAATTCAGAGCAGAGTGATG+TGG + Chr5:768645-768664 MsG0580024094.01.T01:CDS 40.0%
AACTGCATCCAGATGGAATA+TGG + Chr5:767533-767552 MsG0580024094.01.T01:CDS 40.0%
AAGACCCTTAATCTGTACTG+AGG - Chr5:766765-766784 None:intergenic 40.0%
AAGACCTTAGTGAGACCATT+TGG - Chr5:767676-767695 None:intergenic 40.0%
AAGTAGCCTCCATGTTCATT+TGG - Chr5:765305-765324 None:intergenic 40.0%
AAGTATTTCCCAAGGGCTAA+TGG + Chr5:766920-766939 MsG0580024094.01.T01:CDS 40.0%
ACAACCAACGTTCCAGAAAA+AGG + Chr5:765343-765362 MsG0580024094.01.T01:CDS 40.0%
ACACTTGAAGTCCTTTCAAC+TGG + Chr5:767301-767320 MsG0580024094.01.T01:CDS 40.0%
ACTGCATCCAGATGGAATAT+GGG + Chr5:767534-767553 MsG0580024094.01.T01:CDS 40.0%
AGAAAATCAAACACCCTCCT+TGG - Chr5:768305-768324 None:intergenic 40.0%
AGACCTTAGTGAGACCATTT+GGG - Chr5:767675-767694 None:intergenic 40.0%
AGCAAACCAAATGAACATGG+AGG + Chr5:765296-765315 MsG0580024094.01.T01:CDS 40.0%
AGCATTAATCATGACCACCA+CGG - Chr5:766987-767006 None:intergenic 40.0%
AGCTCCTCAGTACAGATTAA+GGG + Chr5:766758-766777 MsG0580024094.01.T01:CDS 40.0%
AGGGTCTTAATGAGAAGCAA+AGG + Chr5:766777-766796 MsG0580024094.01.T01:CDS 40.0%
ATGCATGAAATCCTGAATGG+CGG + Chr5:768739-768758 MsG0580024094.01.T01:CDS 40.0%
ATTATGAATGTCGGATCTGG+AGG + Chr5:768838-768857 MsG0580024094.01.T01:CDS 40.0%
ATTGAATCTTGCGGAAAGGT+TGG + Chr5:768103-768122 MsG0580024094.01.T01:CDS 40.0%
CAATTCATGAACTATACCGC+CGG - Chr5:768467-768486 None:intergenic 40.0%
CACATTGGGATTAAAGCTTG+AGG + Chr5:766949-766968 MsG0580024094.01.T01:CDS 40.0%
CACTTTGATCAAGAACACTG+TGG + Chr5:768945-768964 MsG0580024094.01.T01:CDS 40.0%
CCAATTATGAATGTCGGATC+TGG + Chr5:768835-768854 MsG0580024094.01.T01:CDS 40.0%
CCAGATCCGACATTCATAAT+TGG - Chr5:768838-768857 None:intergenic 40.0%
CTCTTCTCTGAGCATCATTA+GGG - Chr5:765548-765567 None:intergenic 40.0%
GAATGCTCTCTTAAGGAAAG+AGG + Chr5:766397-766416 MsG0580024094.01.T01:CDS 40.0%
GATGGGTGTATAACAAATGC+AGG + Chr5:768811-768830 MsG0580024094.01.T01:CDS 40.0%
GCAAGTCCAGAATTAACTAG+AGG - Chr5:767874-767893 None:intergenic 40.0%
GCAGGACCAATTATGAATGT+CGG + Chr5:768829-768848 MsG0580024094.01.T01:CDS 40.0%
GTCTCAATCAAACAACCAGA+GGG - Chr5:767649-767668 None:intergenic 40.0%
GTTCTTCTACAACACATGCT+TGG + Chr5:768150-768169 MsG0580024094.01.T01:CDS 40.0%
TACAACACATGCTTGGACAA+AGG + Chr5:768157-768176 MsG0580024094.01.T01:CDS 40.0%
TACTGTAAACTGCATCCAGA+TGG + Chr5:767526-767545 MsG0580024094.01.T01:CDS 40.0%
TAGCTCCTCAGTACAGATTA+AGG + Chr5:766757-766776 MsG0580024094.01.T01:CDS 40.0%
TATATACCATGATGTTCCCG+TGG - Chr5:767973-767992 None:intergenic 40.0%
TCTCTTCTCTGAGCATCATT+AGG - Chr5:765549-765568 None:intergenic 40.0%
TGATCAAGAACACTGTGGAA+AGG + Chr5:768950-768969 MsG0580024094.01.T01:CDS 40.0%
TGCATTGTAGGTATTTGCAC+AGG - Chr5:768724-768743 None:intergenic 40.0%
TGTAGATATCCTCATGGATG+TGG + Chr5:767015-767034 MsG0580024094.01.T01:CDS 40.0%
TGTCTCAATCAAACAACCAG+AGG - Chr5:767650-767669 None:intergenic 40.0%
TTATGAATGTCGGATCTGGA+GGG + Chr5:768839-768858 MsG0580024094.01.T01:CDS 40.0%
TTGATTGAGACACTCCCAAA+TGG + Chr5:767658-767677 MsG0580024094.01.T01:CDS 40.0%
TTGGTTCAACCTGATTGAAC+CGG - Chr5:767126-767145 None:intergenic 40.0%
TTTGACGAGTAGGAACATGT+GGG - Chr5:767492-767511 None:intergenic 40.0%
! ACCCAACGCAAATCAAGTTT+TGG + Chr5:765592-765611 MsG0580024094.01.T01:CDS 40.0%
! ATGTACAGTGAGATTGACTC+CGG + Chr5:768064-768083 MsG0580024094.01.T01:intron 40.0%
! GAGAATTGCACTGATGTAAC+TGG + Chr5:768679-768698 MsG0580024094.01.T01:CDS 40.0%
! TTTTGACGAGTAGGAACATG+TGG - Chr5:767493-767512 None:intergenic 40.0%
!! ATTGTAGAGCTTGCTGTTGT+TGG + Chr5:766800-766819 MsG0580024094.01.T01:CDS 40.0%
!! CATCAATTTGTTGCTGAGTG+TGG - Chr5:765380-765399 None:intergenic 40.0%
!! GCATTTGTTATACACCCATC+TGG - Chr5:768811-768830 None:intergenic 40.0%
!! GCTCTGAATTTTCACTCTAC+AGG - Chr5:768636-768655 None:intergenic 40.0%
!! TGTAGAAGTTGATGATCAGG+TGG + Chr5:767831-767850 MsG0580024094.01.T01:CDS 40.0%
!!! GGATTCGCTATTTTTCCAGA+TGG + Chr5:768793-768812 MsG0580024094.01.T01:CDS 40.0%
!!! TCTTCTGATTTTGGAGTTGC+TGG + Chr5:766683-766702 MsG0580024094.01.T01:CDS 40.0%
AAATCAAACACCCTCCTTGG+AGG - Chr5:768302-768321 None:intergenic 45.0%
AATGACTCACCACATCCATG+AGG - Chr5:767027-767046 None:intergenic 45.0%
AATGGCTGAACTGACCAAAC+TGG + Chr5:766823-766842 MsG0580024094.01.T01:CDS 45.0%
AATTGGTGGGAAGCCAAAGA+GGG - Chr5:766865-766884 None:intergenic 45.0%
ACCAAACTGGCTAGGACATA+TGG + Chr5:766836-766855 MsG0580024094.01.T01:CDS 45.0%
ACTCCCAAATGGTCTCACTA+AGG + Chr5:767669-767688 MsG0580024094.01.T01:CDS 45.0%
ACTTCCACATACGTTGCATG+TGG - Chr5:766327-766346 None:intergenic 45.0%
AGCACTTAGCACTACACTGA+CGG - Chr5:768255-768274 None:intergenic 45.0%
ATTGAACCGGATGCATGGTT+TGG - Chr5:767113-767132 None:intergenic 45.0%
CACAACGACAGCAATATGCA+TGG - Chr5:765700-765719 None:intergenic 45.0%
CACCCATAAACCTTTCAAGC+TGG - Chr5:766589-766608 None:intergenic 45.0%
CACTGAGATTCTCAATGGAG+AGG + Chr5:766889-766908 MsG0580024094.01.T01:CDS 45.0%
CATGCATATTGCTGTCGTTG+TGG + Chr5:765698-765717 MsG0580024094.01.T01:intron 45.0%
CCATAAACCTTTCAAGCTGG+CGG - Chr5:766586-766605 None:intergenic 45.0%
CGCCAGCTTGAAAGGTTTAT+GGG + Chr5:766584-766603 MsG0580024094.01.T01:intron 45.0%
CGGCGGTATAGTTCATGAAT+TGG + Chr5:768465-768484 MsG0580024094.01.T01:CDS 45.0%
CTCTGAGCATCATTAGGGTT+AGG - Chr5:765543-765562 None:intergenic 45.0%
GAAGTCCTTTCAACTGGAGT+GGG + Chr5:767307-767326 MsG0580024094.01.T01:CDS 45.0%
GACAGCAATATGCATGGCAA+CGG - Chr5:765694-765713 None:intergenic 45.0%
GACTGGAGAATGCTCTCTTA+AGG + Chr5:766390-766409 MsG0580024094.01.T01:CDS 45.0%
GCAATGTTTGTAACCGCATC+AGG - Chr5:765962-765981 None:intergenic 45.0%
GCTAATGGTCCCAACACATT+GGG + Chr5:766935-766954 MsG0580024094.01.T01:CDS 45.0%
GGAAAAATAGCGAATCCGGA+AGG - Chr5:768790-768809 None:intergenic 45.0%
GTCATGACCATTACAACCTC+CGG - Chr5:768197-768216 None:intergenic 45.0%
GTTACCACATGCAACGTATG+TGG + Chr5:766320-766339 MsG0580024094.01.T01:CDS 45.0%
TAATTGGTGGGAAGCCAAAG+AGG - Chr5:766866-766885 None:intergenic 45.0%
TCCAGATGGAATATGGGTAG+TGG + Chr5:767540-767559 MsG0580024094.01.T01:CDS 45.0%
TCCATATGTCCTAGCCAGTT+TGG - Chr5:766840-766859 None:intergenic 45.0%
TGAAGTCCTTTCAACTGGAG+TGG + Chr5:767306-767325 MsG0580024094.01.T01:CDS 45.0%
TTGACGAGTAGGAACATGTG+GGG - Chr5:767491-767510 None:intergenic 45.0%
! TGGAACGTTGGTTGTGTTGT+TGG - Chr5:765338-765357 None:intergenic 45.0%
!! AGAGCTTGCTGTTGTTGGAA+TGG + Chr5:766805-766824 MsG0580024094.01.T01:CDS 45.0%
!! CAATTTGTTGCTGAGTGTGG+CGG - Chr5:765377-765396 None:intergenic 45.0%
!! TGGACAAAGGTACCTGGAAA+CGG + Chr5:768170-768189 MsG0580024094.01.T01:CDS 45.0%
!!! AGGTCCTTTTTCTGGAACGT+TGG - Chr5:765350-765369 None:intergenic 45.0%
!!! TCTGATTTTGGAGTTGCTGG+TGG + Chr5:766686-766705 MsG0580024094.01.T01:CDS 45.0%
!!! TGCTTTTGGAGCTAAACGCT+GGG + Chr5:767891-767910 MsG0580024094.01.T01:CDS 45.0%
!!! TTGCTTTTGGAGCTAAACGC+TGG + Chr5:767890-767909 MsG0580024094.01.T01:CDS 45.0%
!!! ACTATTATTAATATTATTTT+AGG - Chr5:767716-767735 None:intergenic 5.0%
!!! TAACTAATTATATTTTATAT+AGG + Chr5:766211-766230 MsG0580024094.01.T01:intron 5.0%
AAACGGACCGGAGGTTGTAA+TGG + Chr5:768187-768206 MsG0580024094.01.T01:CDS 50.0%
AACGTTCCACGGGAACATCA+TGG + Chr5:767964-767983 MsG0580024094.01.T01:CDS 50.0%
ACAACCAGAGGGTCTTCTGT+TGG - Chr5:767638-767657 None:intergenic 50.0%
ACCATGCATCCGGTTCAATC+AGG + Chr5:767114-767133 MsG0580024094.01.T01:intron 50.0%
ACCTGATTGAACCGGATGCA+TGG - Chr5:767118-767137 None:intergenic 50.0%
AGAACCAACAGAAGACCCTC+TGG + Chr5:767631-767650 MsG0580024094.01.T01:CDS 50.0%
AGAGAAGAGAGCTGAGCCTT+CGG + Chr5:765559-765578 MsG0580024094.01.T01:CDS 50.0%
ATATTGGCACGAGAGTCTGC+AGG - Chr5:766626-766645 None:intergenic 50.0%
ATGATGTTCCCGTGGAACGT+TGG - Chr5:767965-767984 None:intergenic 50.0%
ATTGGTGGGAAGCCAAAGAG+GGG - Chr5:766864-766883 None:intergenic 50.0%
CCGCCAGCTTGAAAGGTTTA+TGG + Chr5:766583-766602 MsG0580024094.01.T01:intron 50.0%
CGTCTTACTCTGCTTCCTTC+CGG + Chr5:768772-768791 MsG0580024094.01.T01:CDS 50.0%
CTGAACTGACCAAACTGGCT+AGG + Chr5:766828-766847 MsG0580024094.01.T01:CDS 50.0%
CTTGGACCAAACCATGCATC+CGG + Chr5:767104-767123 MsG0580024094.01.T01:intron 50.0%
GCACTTAGCACTACACTGAC+GGG - Chr5:768254-768273 None:intergenic 50.0%
GCCACTACCCATATTCCATC+TGG - Chr5:767544-767563 None:intergenic 50.0%
GGAGTTGCTGGTGGTAACAA+TGG + Chr5:766695-766714 MsG0580024094.01.T01:CDS 50.0%
GGCTAATGGTCCCAACACAT+TGG + Chr5:766934-766953 MsG0580024094.01.T01:CDS 50.0%
GTAGGAGAGGCTTTCACTGT+TGG + Chr5:766734-766753 MsG0580024094.01.T01:CDS 50.0%
GTCATGTGACATTTCCCCAG+CGG - Chr5:766357-766376 None:intergenic 50.0%
TACCTCCCACTCCAGTTGAA+AGG - Chr5:767315-767334 None:intergenic 50.0%
TGAAAGCCTCTCCTACCATG+CGG - Chr5:766730-766749 None:intergenic 50.0%
TGACGATCAGCAGCTAAGAC+TGG + Chr5:766373-766392 MsG0580024094.01.T01:CDS 50.0%
TGAGGGTTCGAAAGAATCCG+TGG + Chr5:766967-766986 MsG0580024094.01.T01:CDS 50.0%
TGTTGGGACCATTAGCCCTT+GGG - Chr5:766931-766950 None:intergenic 50.0%
TTCATGAACTATACCGCCGG+CGG - Chr5:768464-768483 None:intergenic 50.0%
! ACAGTGAGATTGACTCCGGA+GGG + Chr5:768068-768087 MsG0580024094.01.T01:intron 50.0%
! TACAGTGAGATTGACTCCGG+AGG + Chr5:768067-768086 MsG0580024094.01.T01:intron 50.0%
! TTTGGCTTCCAGTTCCTCCA+AGG + Chr5:768285-768304 MsG0580024094.01.T01:CDS 50.0%
!! AAAGGTACCTGGAAACGGAC+CGG + Chr5:768175-768194 MsG0580024094.01.T01:CDS 50.0%
!! CATGCTTGGACAAAGGTACC+TGG + Chr5:768164-768183 MsG0580024094.01.T01:CDS 50.0%
AAACGGCCACCAACGTTCCA+CGG + Chr5:767953-767972 MsG0580024094.01.T01:CDS 55.0%
AACACCCTCCTTGGAGGAAC+TGG - Chr5:768296-768315 None:intergenic 55.0%
ACGAGTAGGAACATGTGGGG+AGG - Chr5:767488-767507 None:intergenic 55.0%
ACTTCAACGGCAGCCTGATG+CGG + Chr5:765946-765965 MsG0580024094.01.T01:intron 55.0%
ATGTTCCCGTGGAACGTTGG+TGG - Chr5:767962-767981 None:intergenic 55.0%
CAGTGGGATATTCTCTCCGC+CGG + Chr5:768445-768464 MsG0580024094.01.T01:intron 55.0%
CGAGAGTCTGCAGGATCTGT+TGG - Chr5:766617-766636 None:intergenic 55.0%
CGAGTAGGAACATGTGGGGA+GGG - Chr5:767487-767506 None:intergenic 55.0%
CTACGATGGAGCCTTGCAAG+TGG + Chr5:767336-767355 MsG0580024094.01.T01:CDS 55.0%
GAGTAGGAACATGTGGGGAG+GGG - Chr5:767486-767505 None:intergenic 55.0%
GCTTCCAGTTCCTCCAAGGA+GGG + Chr5:768289-768308 MsG0580024094.01.T01:CDS 55.0%
GGACATATGGACCCCCTCTT+TGG + Chr5:766849-766868 MsG0580024094.01.T01:CDS 55.0%
GGAGTGGGAGGTAACTACGA+TGG + Chr5:767322-767341 MsG0580024094.01.T01:CDS 55.0%
GGGTTCGAAAGAATCCGTGG+TGG + Chr5:766970-766989 MsG0580024094.01.T01:CDS 55.0%
GTCCTTTCAACTGGAGTGGG+AGG + Chr5:767310-767329 MsG0580024094.01.T01:CDS 55.0%
GTGGAAGTTCCACTACCGCT+GGG + Chr5:766339-766358 MsG0580024094.01.T01:CDS 55.0%
GTGTTGGGACCATTAGCCCT+TGG - Chr5:766932-766951 None:intergenic 55.0%
TGACATTTCCCCAGCGGTAG+TGG - Chr5:766351-766370 None:intergenic 55.0%
TGGAAGTTCCACTACCGCTG+GGG + Chr5:766340-766359 MsG0580024094.01.T01:CDS 55.0%
TGTGGAAGTTCCACTACCGC+TGG + Chr5:766338-766357 MsG0580024094.01.T01:CDS 55.0%
TTGGGTCTAACCCAGTCCGA+AGG - Chr5:765578-765597 None:intergenic 55.0%
TTGGTGGGAAGCCAAAGAGG+GGG - Chr5:766863-766882 None:intergenic 55.0%
! CCACATGCAAGGCTAGCTCT+GGG + Chr5:768904-768923 MsG0580024094.01.T01:CDS 55.0%
! GCGGCGATAGGTCCTTTTTC+TGG - Chr5:765358-765377 None:intergenic 55.0%
! TCCACATGCAAGGCTAGCTC+TGG + Chr5:768903-768922 MsG0580024094.01.T01:CDS 55.0%
AACGGCCACCAACGTTCCAC+GGG + Chr5:767954-767973 MsG0580024094.01.T01:CDS 60.0%
AAGCCTCTCCTACCATGCGG+TGG - Chr5:766727-766746 None:intergenic 60.0%
ACAACCTCCGGTCCGTTTCC+AGG - Chr5:768185-768204 None:intergenic 60.0%
ACACCACCGCATGGTAGGAG+AGG + Chr5:766721-766740 MsG0580024094.01.T01:CDS 60.0%
AGAGAGCTGAGCCTTCGGAC+TGG + Chr5:765564-765583 MsG0580024094.01.T01:CDS 60.0%
CAATGGAGCACACCACCGCA+TGG + Chr5:766712-766731 MsG0580024094.01.T01:CDS 60.0%
GAACAGGCGCACTTCGCTGA+AGG + Chr5:765620-765639 MsG0580024094.01.T01:CDS 60.0%
GACTTGAGTCGCCGCCATTC+AGG - Chr5:768753-768772 None:intergenic 60.0%
GAGAGCTGAGCCTTCGGACT+GGG + Chr5:765565-765584 MsG0580024094.01.T01:CDS 60.0%
GGCTTCCAGTTCCTCCAAGG+AGG + Chr5:768288-768307 MsG0580024094.01.T01:CDS 60.0%
TGGGATATTCTCTCCGCCGG+CGG + Chr5:768448-768467 MsG0580024094.01.T01:CDS 60.0%
TTGCTGAGTGTGGCGGCGAT+AGG - Chr5:765370-765389 None:intergenic 60.0%
!! CCCAGAGCTAGCCTTGCATG+TGG - Chr5:768907-768926 None:intergenic 60.0%
GGAGCACACCACCGCATGGT+AGG + Chr5:766716-766735 MsG0580024094.01.T01:CDS 65.0%
GGTACCTGGAAACGGACCGG+AGG + Chr5:768178-768197 MsG0580024094.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 765222 769005 765222 ID=MsG0580024094.01;Name=MsG0580024094.01
Chr5 mRNA 765222 769005 765222 ID=MsG0580024094.01.T01;Parent=MsG0580024094.01;Name=MsG0580024094.01.T01;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|1|1|10|0|726
Chr5 exon 765222 765409 765222 ID=MsG0580024094.01.T01:exon:23198;Parent=MsG0580024094.01.T01
Chr5 exon 765524 765641 765524 ID=MsG0580024094.01.T01:exon:23199;Parent=MsG0580024094.01.T01
Chr5 exon 766233 766418 766233 ID=MsG0580024094.01.T01:exon:23200;Parent=MsG0580024094.01.T01
Chr5 exon 766590 767036 766590 ID=MsG0580024094.01.T01:exon:23201;Parent=MsG0580024094.01.T01
Chr5 exon 767256 767357 767256 ID=MsG0580024094.01.T01:exon:23202;Parent=MsG0580024094.01.T01
Chr5 exon 767463 767690 767463 ID=MsG0580024094.01.T01:exon:23203;Parent=MsG0580024094.01.T01
Chr5 exon 767814 767985 767814 ID=MsG0580024094.01.T01:exon:23204;Parent=MsG0580024094.01.T01
Chr5 exon 768072 768349 768072 ID=MsG0580024094.01.T01:exon:23205;Parent=MsG0580024094.01.T01
Chr5 exon 768448 768543 768448 ID=MsG0580024094.01.T01:exon:23206;Parent=MsG0580024094.01.T01
Chr5 exon 768640 769005 768640 ID=MsG0580024094.01.T01:exon:23207;Parent=MsG0580024094.01.T01
Chr5 CDS 765222 765409 765222 ID=MsG0580024094.01.T01:cds;Parent=MsG0580024094.01.T01
Chr5 CDS 765524 765641 765524 ID=MsG0580024094.01.T01:cds;Parent=MsG0580024094.01.T01
Chr5 CDS 766233 766418 766233 ID=MsG0580024094.01.T01:cds;Parent=MsG0580024094.01.T01
Chr5 CDS 766590 767036 766590 ID=MsG0580024094.01.T01:cds;Parent=MsG0580024094.01.T01
Chr5 CDS 767256 767357 767256 ID=MsG0580024094.01.T01:cds;Parent=MsG0580024094.01.T01
Chr5 CDS 767463 767690 767463 ID=MsG0580024094.01.T01:cds;Parent=MsG0580024094.01.T01
Chr5 CDS 767814 767985 767814 ID=MsG0580024094.01.T01:cds;Parent=MsG0580024094.01.T01
Chr5 CDS 768072 768349 768072 ID=MsG0580024094.01.T01:cds;Parent=MsG0580024094.01.T01
Chr5 CDS 768448 768543 768448 ID=MsG0580024094.01.T01:cds;Parent=MsG0580024094.01.T01
Chr5 CDS 768640 769005 768640 ID=MsG0580024094.01.T01:cds;Parent=MsG0580024094.01.T01
Gene Sequence

>MsG0580024094.01.T01

ATGGTTAATACTCCACATCAAAATCACATCAAGAACATGTATCATCAGAATAGGATGACAAGAACAAGAGAAGAAGCAAACCAAATGAACATGGAGGCTACTTCAAGTGATGACCAACAACACAACCAACGTTCCAGAAAAAGGACCTATCGCCGCCACACTCAGCAACAAATTGATGAAATGGATACTTTCTTCAAGCAGTGTCCTAACCCTAATGATGCTCAGAGAAGAGAGCTGAGCCTTCGGACTGGGTTAGACCCAACGCAAATCAAGTTTTGGTTTCAGAACAGGCGCACTTCGCTGAAGGTTCAAACTGATAGGGAAGAGAATGAGCTATTAAAGATTGAGAATGAAAAGCTTCGAGATGAAGTTAATAGATACAGGGGGGCAATTGTTACCACATGCAACGTATGTGGAAGTTCCACTACCGCTGGGGAAATGTCACATGACGATCAGCAGCTAAGACTGGAGAATGCTCTCTTAAGGAAAGAGCTTGAAAGGTTTATGGGTGAGACGCCAACAGATCCTGCAGACTCTCGTGCCAATATAACATCATCCAACAATAGCACTCATGTTATTTCACGCTCTTCTGATTTTGGAGTTGCTGGTGGTAACAATGGAGCACACCACCGCATGGTAGGAGAGGCTTTCACTGTTGGTAGCTCCTCAGTACAGATTAAGGGTCTTAATGAGAAGCAAAGGATTGTAGAGCTTGCTGTTGTTGGAATGGCTGAACTGACCAAACTGGCTAGGACATATGGACCCCCTCTTTGGCTTCCCACCAATTATGTCACTGAGATTCTCAATGGAGAGGAATACATGAAGTATTTCCCAAGGGCTAATGGTCCCAACACATTGGGATTAAAGCTTGAGGGTTCGAAAGAATCCGTGGTGGTCATGATTAATGCTCCTGATCTTGTAGATATCCTCATGGATGTGAATCAATGGTCAAATATGTTTTGCGGCATTGTTTCTAAAGCAGCAACACTTGAAGTCCTTTCAACTGGAGTGGGAGGTAACTACGATGGAGCCTTGCAAGTGATGACAGCTGAATTTCAAGTCCCCTCCCCACATGTTCCTACTCGTCAAAACCATTTTGTGAGATACTGTAAACTGCATCCAGATGGAATATGGGTAGTGGCTGATGTGTCCTTGCATCTGTTAAATGCAACATCTGCTAGTAGTAGTAGTAGTAGTAGTACTGCTTCAAGAACCAACAGAAGACCCTCTGGTTGTTTGATTGAGACACTCCCAAATGGTCTCACTAAGGTTACATGGATTGAAAATGTAGAAGTTGATGATCAGGTGGTGCAAAATATATATAAACCTCTAGTTAATTCTGGACTTGCTTTTGGAGCTAAACGCTGGGTAGCTACATTACATCGACAATCTGATCGTCTTGTTTTTAAAACGGCCACCAACGTTCCACGGGAACATCATGTGAGATTGACTCCGGAGGGAAAGAAAAGTATATTGAATCTTGCGGAAAGGTTGGTAGCTAGCTTTAGTACAAGTATTGGTTCTTCTACAACACATGCTTGGACAAAGGTACCTGGAAACGGACCGGAGGTTGTAATGGTCATGACGAAAAGATATATCGATGAATCGAGCATTGACAAACCCGTCAGTGTAGTGCTAAGTGCTGCTACTTCTTTTTGGCTTCCAGTTCCTCCAAGGAGGGTGTTTGATTTTCTTCGAGATCAAAACACAAGAAAACATTGGGATATTCTCTCCGCCGGCGGTATAGTTCATGAATTGGCTCACATTTCAAATGGTCGTGATTCTGGCAACTATGTCTCCTTATTTCGTATCACTAGTGAAAATTCAGAGCAGAGTGATGTGGTAGTACTGCAAGAGAATTGCACTGATGTAACTGGGTCATATGTAGTATATGCGCCTGTGCAAATACCTACAATGCATGAAATCCTGAATGGCGGCGACTCAAGTCGTCTTACTCTGCTTCCTTCCGGATTCGCTATTTTTCCAGATGGGTGTATAACAAATGCAGGACCAATTATGAATGTCGGATCTGGAGGGTCTCTTGTCACAGTTGCCTTTCAGATTATAGTTGATTCTATTCCACATGCAAGGCTAGCTCTGGGTTCAATCACCACTGTTAACACTTTGATCAAGAACACTGTGGAAAGGATTAAAACTGCAGTGATGCCTAATGGCATCTAA

Protein sequence

>MsG0580024094.01.T01

MVNTPHQNHIKNMYHQNRMTRTREEANQMNMEATSSDDQQHNQRSRKRTYRRHTQQQIDEMDTFFKQCPNPNDAQRRELSLRTGLDPTQIKFWFQNRRTSLKVQTDREENELLKIENEKLRDEVNRYRGAIVTTCNVCGSSTTAGEMSHDDQQLRLENALLRKELERFMGETPTDPADSRANITSSNNSTHVISRSSDFGVAGGNNGAHHRMVGEAFTVGSSSVQIKGLNEKQRIVELAVVGMAELTKLARTYGPPLWLPTNYVTEILNGEEYMKYFPRANGPNTLGLKLEGSKESVVVMINAPDLVDILMDVNQWSNMFCGIVSKAATLEVLSTGVGGNYDGALQVMTAEFQVPSPHVPTRQNHFVRYCKLHPDGIWVVADVSLHLLNATSASSSSSSSTASRTNRRPSGCLIETLPNGLTKVTWIENVEVDDQVVQNIYKPLVNSGLAFGAKRWVATLHRQSDRLVFKTATNVPREHHVRLTPEGKKSILNLAERLVASFSTSIGSSTTHAWTKVPGNGPEVVMVMTKRYIDESSIDKPVSVVLSAATSFWLPVPPRRVFDFLRDQNTRKHWDILSAGGIVHELAHISNGRDSGNYVSLFRITSENSEQSDVVVLQENCTDVTGSYVVYAPVQIPTMHEILNGGDSSRLTLLPSGFAIFPDGCITNAGPIMNVGSGGSLVTVAFQIIVDSIPHARLALGSITTVNTLIKNTVERIKTAVMPNGI*