Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016465.01.T01 | PNY17631.1 | 84.127 | 252 | 38 | 1 | 1 | 250 | 1 | 252 | 5.48E-155 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016465.01.T01 | Q84VY3 | 67.105 | 228 | 74 | 1 | 21 | 247 | 38 | 265 | 1.94E-110 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016465.01.T01 | A0A2K3PQT1 | 84.127 | 252 | 38 | 1 | 1 | 250 | 1 | 252 | 2.62e-155 | 446 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048357.01 | MsG0380016465.01 | 0.897748 | 1.040712e-76 | 1.192591e-72 |
| MsG0180000632.01 | MsG0380016465.01 | 0.829717 | 4.403468e-55 | 4.544079e-52 |
| MsG0180001200.01 | MsG0380016465.01 | 0.846410 | 2.211082e-59 | 3.802556e-56 |
| MsG0180001771.01 | MsG0380016465.01 | 0.857118 | 2.029308e-62 | 4.955066e-59 |
| MsG0180003431.01 | MsG0380016465.01 | 0.815324 | 9.800761e-52 | 6.735993e-49 |
| MsG0180003741.01 | MsG0380016465.01 | 0.857018 | 2.171370e-62 | 5.283463e-59 |
| MsG0180005540.01 | MsG0380016465.01 | 0.811414 | 7.084339e-51 | 4.382590e-48 |
| MsG0380011496.01 | MsG0380016465.01 | 0.837139 | 6.198836e-57 | 7.978377e-54 |
| MsG0380011501.01 | MsG0380016465.01 | 0.825473 | 4.598586e-54 | 4.195497e-51 |
| MsG0380011675.01 | MsG0380016465.01 | 0.821774 | 3.376350e-53 | 2.773028e-50 |
| MsG0380016465.01 | MsG0380016466.01 | 0.857368 | 1.711619e-62 | 4.214557e-59 |
| MsG0380016465.01 | MsG0380017869.01 | 0.807929 | 3.975411e-50 | 2.242641e-47 |
| MsG0380016465.01 | MsG0480018909.01 | 0.871875 | 4.896045e-67 | 2.006079e-63 |
| MsG0380016465.01 | MsG0480019279.01 | 0.849510 | 3.087615e-60 | 5.866582e-57 |
| MsG0380016465.01 | MsG0480024022.01 | 0.828384 | 9.266472e-55 | 9.196259e-52 |
| MsG0380016465.01 | MsG0580024966.01 | 0.811423 | 7.052703e-51 | 4.364075e-48 |
| MsG0380016465.01 | MsG0580025466.01 | 0.808361 | 3.216284e-50 | 1.835405e-47 |
| MsG0380016465.01 | MsG0580025973.01 | 0.810499 | 1.118322e-50 | 6.751907e-48 |
| MsG0380016465.01 | MsG0580025974.01 | 0.823479 | 1.354904e-53 | 1.167964e-50 |
| MsG0380016465.01 | MsG0580026000.01 | 0.802270 | 6.074444e-49 | 2.962906e-46 |
| MsG0380016465.01 | MsG0580027925.01 | 0.816504 | 5.345509e-52 | 3.794378e-49 |
| MsG0380016465.01 | MsG0580028636.01 | 0.807236 | 5.578945e-50 | 3.091115e-47 |
| MsG0380016465.01 | MsG0580029310.01 | 0.863456 | 2.456759e-64 | 7.451570e-61 |
| MsG0380016465.01 | MsG0580029405.01 | 0.840312 | 9.382794e-58 | 1.331174e-54 |
| MsG0380016465.01 | MsG0580029417.01 | 0.888148 | 7.633091e-73 | 5.842230e-69 |
| MsG0380016465.01 | MsG0580029418.01 | 0.880512 | 5.163470e-70 | 2.918900e-66 |
| MsG0380016465.01 | MsG0680031342.01 | 0.827076 | 1.910662e-54 | 1.825173e-51 |
| MsG0380016465.01 | MsG0680031707.01 | 0.876360 | 1.485760e-68 | 7.182142e-65 |
| MsG0380016465.01 | MsG0680031959.01 | 0.827502 | 1.510178e-54 | 1.460638e-51 |
| MsG0380016465.01 | MsG0680033143.01 | 0.838479 | 2.806311e-57 | 3.763454e-54 |
| MsG0380016465.01 | MsG0680034835.01 | 0.802281 | 6.044829e-49 | 2.949271e-46 |
| MsG0380016465.01 | MsG0680035658.01 | 0.804317 | 2.289479e-49 | 1.176765e-46 |
| MsG0380016465.01 | MsG0780036148.01 | 0.805024 | 1.630180e-49 | 8.532992e-47 |
| MsG0380016465.01 | MsG0780040846.01 | 0.858788 | 6.478182e-63 | 1.673028e-59 |
| MsG0380016465.01 | MsG0780040966.01 | 0.887510 | 1.339641e-72 | 9.991054e-69 |
| MsG0380016465.01 | MsG0780041259.01 | 0.856643 | 2.800641e-62 | 6.729246e-59 |
| MsG0380016465.01 | MsG0780041676.01 | 0.805260 | 1.454638e-49 | 7.660286e-47 |
| MsG0380016465.01 | MsG0780041698.01 | 0.848259 | 6.869698e-60 | 1.253345e-56 |
| MsG0380016465.01 | MsG0880041858.01 | 0.835872 | 1.303029e-56 | 1.614284e-53 |
| MsG0380016465.01 | MsG0880042442.01 | 0.819948 | 8.882449e-53 | 6.933431e-50 |
| MsG0380016465.01 | MsG0880042958.01 | 0.820312 | 7.329900e-53 | 5.779514e-50 |
| MsG0380016465.01 | MsG0880042959.01 | 0.828327 | 9.564058e-55 | 9.475019e-52 |
| MsG0380016465.01 | MsG0880045585.01 | 0.824827 | 6.537819e-54 | 5.856504e-51 |
| MsG0380016465.01 | MsG0880045586.01 | 0.847278 | 1.279809e-59 | 2.263002e-56 |
| MsG0380016465.01 | MsG0880046942.01 | 0.821275 | 4.402823e-53 | 3.565527e-50 |
| MsG0280007197.01 | MsG0380016465.01 | 0.805463 | 1.319059e-49 | 6.983136e-47 |
| MsG0280007305.01 | MsG0380016465.01 | 0.874081 | 8.921297e-68 | 3.961970e-64 |
| MsG0280007414.01 | MsG0380016465.01 | 0.846543 | 2.033435e-59 | 3.511969e-56 |
| MsG0280008390.01 | MsG0380016465.01 | 0.804724 | 1.883223e-49 | 9.782416e-47 |
| MsG0280008395.01 | MsG0380016465.01 | 0.816170 | 6.346839e-52 | 4.464560e-49 |
| MsG0280010163.01 | MsG0380016465.01 | 0.808251 | 3.395115e-50 | 1.931820e-47 |
| MsG0280010320.01 | MsG0380016465.01 | 0.845011 | 5.299318e-59 | 8.711371e-56 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016465.01.T01 | MTR_3g090010 | 82.470 | 251 | 43 | 1 | 1 | 250 | 1 | 251 | 3.85e-155 | 436 |
| MsG0380016465.01.T01 | MTR_3g090100 | 74.797 | 246 | 58 | 1 | 2 | 247 | 3 | 244 | 7.06e-138 | 392 |
| MsG0380016465.01.T01 | MTR_3g090020 | 74.297 | 249 | 60 | 1 | 2 | 250 | 3 | 247 | 4.34e-137 | 390 |
| MsG0380016465.01.T01 | MTR_3g089025 | 70.850 | 247 | 72 | 0 | 1 | 247 | 1 | 247 | 2.76e-127 | 365 |
| MsG0380016465.01.T01 | MTR_1g029150 | 71.008 | 238 | 62 | 1 | 17 | 247 | 28 | 265 | 7.17e-122 | 352 |
| MsG0380016465.01.T01 | MTR_5g024130 | 68.519 | 216 | 66 | 1 | 32 | 247 | 57 | 270 | 8.56e-105 | 309 |
| MsG0380016465.01.T01 | MTR_4g087440 | 68.519 | 216 | 66 | 1 | 32 | 247 | 57 | 270 | 9.03e-105 | 309 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016465.01.T01 | AT1G43800 | 67.105 | 228 | 74 | 1 | 21 | 247 | 38 | 265 | 1.98e-111 | 326 |
| MsG0380016465.01.T01 | AT3G02630 | 67.593 | 216 | 68 | 1 | 32 | 247 | 59 | 272 | 1.46e-102 | 303 |
| MsG0380016465.01.T01 | AT3G02610 | 65.611 | 221 | 75 | 1 | 27 | 247 | 64 | 283 | 5.41e-102 | 303 |
| MsG0380016465.01.T01 | AT3G02610 | 65.611 | 221 | 75 | 1 | 27 | 247 | 66 | 285 | 6.14e-102 | 302 |
| MsG0380016465.01.T01 | AT5G16230 | 60.744 | 242 | 93 | 2 | 6 | 247 | 36 | 275 | 8.00e-101 | 299 |
| MsG0380016465.01.T01 | AT5G16240 | 61.317 | 243 | 81 | 3 | 6 | 247 | 40 | 270 | 1.01e-99 | 296 |
| MsG0380016465.01.T01 | AT3G02620 | 57.874 | 254 | 99 | 3 | 1 | 247 | 23 | 275 | 1.41e-99 | 296 |
| MsG0380016465.01.T01 | AT3G02620 | 57.874 | 254 | 99 | 3 | 1 | 247 | 26 | 278 | 2.00e-99 | 296 |
| MsG0380016465.01.T01 | AT2G43710 | 66.667 | 216 | 70 | 1 | 32 | 247 | 65 | 278 | 2.41e-99 | 295 |
| MsG0380016465.01.T01 | AT2G43710 | 66.667 | 216 | 70 | 1 | 32 | 247 | 65 | 278 | 2.46e-99 | 295 |
| MsG0380016465.01.T01 | AT5G16230 | 66.500 | 200 | 66 | 1 | 48 | 247 | 1 | 199 | 2.06e-94 | 280 |
| MsG0380016465.01.T01 | AT3G02620 | 65.500 | 200 | 68 | 1 | 48 | 247 | 1 | 199 | 1.43e-92 | 276 |
Find 112 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTATATATAAGTAAAATT+TGG | 0.134908 | 3:-83865632 | MsG0380016465.01.T01:three_prime_UTR |
| TCGATCAAGTGAAGGCATTA+AGG | 0.300188 | 3:-83867343 | MsG0380016465.01.T01:CDS |
| CTCTTGCAGCCTCCTAATCT+TGG | 0.308277 | 3:+83865795 | None:intergenic |
| AAAACATATCTCTATCTTTC+GGG | 0.321851 | 3:-83867122 | MsG0380016465.01.T01:CDS |
| ATGGCAATGTGCACTCAATT+AGG | 0.331509 | 3:-83867587 | MsG0380016465.01.T01:CDS |
| GAGACATTGAGTATGTCTTT+TGG | 0.340015 | 3:+83867501 | None:intergenic |
| GGGTCGGGTTGATATGTTCA+TGG | 0.349549 | 3:-83867102 | MsG0380016465.01.T01:CDS |
| TTTAATATATAAACTAAAAC+TGG | 0.353168 | 3:+83865523 | None:intergenic |
| CAAAACATATCTCTATCTTT+CGG | 0.357765 | 3:-83867123 | MsG0380016465.01.T01:CDS |
| TCTATATATAAGTAAAATTT+GGG | 0.365282 | 3:-83865631 | MsG0380016465.01.T01:three_prime_UTR |
| GATAGCTTGGAGTTCTTGAT+TGG | 0.365666 | 3:-83865894 | MsG0380016465.01.T01:three_prime_UTR |
| CCAACATTCCTCCACTGGTT+TGG | 0.368196 | 3:+83867415 | None:intergenic |
| TTGCTTATGGTGTAGGATAT+AGG | 0.368907 | 3:-83866271 | MsG0380016465.01.T01:intron |
| ACCATCATGCATCAAGTGTC+CGG | 0.383908 | 3:+83865992 | None:intergenic |
| AGTGTCCGGGCATTGTTATA+TGG | 0.388397 | 3:+83866006 | None:intergenic |
| GGGCTGTATGGACACGCTCT+TGG | 0.392310 | 3:-83867178 | MsG0380016465.01.T01:CDS |
| CGATCAAGTGAAGGCATTAA+GGG | 0.400225 | 3:-83867342 | MsG0380016465.01.T01:CDS |
| TTTCAAGTCATTAGAGAGTT+GGG | 0.400750 | 3:-83867462 | MsG0380016465.01.T01:CDS |
| ACAGAAAAGTGGCTCGCTCT+TGG | 0.405583 | 3:+83866206 | None:intergenic |
| AGATGAAACCTAAGTTTAGT+TGG | 0.414064 | 3:-83865750 | MsG0380016465.01.T01:three_prime_UTR |
| TTTGGGACGGGGCCTTTAGA+TGG | 0.414164 | 3:+83867537 | None:intergenic |
| CATTGCCAACGTACCAATCA+TGG | 0.428195 | 3:-83867253 | MsG0380016465.01.T01:CDS |
| ATCGCTGTCATCGTCTCTGT+GGG | 0.438188 | 3:+83866047 | None:intergenic |
| GTGGGCTTGCACCCAAGATT+AGG | 0.440604 | 3:-83865807 | MsG0380016465.01.T01:three_prime_UTR |
| GCACCAATCCATGGGCTGTA+TGG | 0.441370 | 3:-83867190 | MsG0380016465.01.T01:CDS |
| CTTGGACGGCTGAGGAGAAT+AGG | 0.445934 | 3:-83867160 | MsG0380016465.01.T01:CDS |
| TCGAAGACCCAACTAAACTT+AGG | 0.447054 | 3:+83865742 | None:intergenic |
| AAAACTACAAAATAATCGTT+TGG | 0.448525 | 3:+83867302 | None:intergenic |
| GATGAAACCTAAGTTTAGTT+GGG | 0.451996 | 3:-83865749 | MsG0380016465.01.T01:three_prime_UTR |
| ATATCTCTATCTTTCGGGTC+GGG | 0.456137 | 3:-83867117 | MsG0380016465.01.T01:CDS |
| TCCTCCACTGGTTTGGCTAG+TGG | 0.461572 | 3:+83867422 | None:intergenic |
| CCAGTCTGTTAAACCATGAT+TGG | 0.462427 | 3:+83867240 | None:intergenic |
| GGCTGCCAACATTCCTCCAC+TGG | 0.466668 | 3:+83867410 | None:intergenic |
| CTGCAGAGAAATGACTGAAT+AGG | 0.475282 | 3:+83865958 | None:intergenic |
| ATATTATAAGATACTCCCTT+CGG | 0.475553 | 3:+83865500 | None:intergenic |
| TCTTGCAGCCTCCTAATCTT+GGG | 0.478217 | 3:+83865796 | None:intergenic |
| GCATAAGCAAAAGCCTTGTA+TGG | 0.479543 | 3:+83866235 | None:intergenic |
| TCTGCAGTGGCACAACGTAT+TGG | 0.480986 | 3:-83865942 | MsG0380016465.01.T01:three_prime_UTR |
| TCTTGATTGGACGTTGGAGA+TGG | 0.494562 | 3:-83865881 | MsG0380016465.01.T01:three_prime_UTR |
| GTACGTTGGCAATGCTTCCT+CGG | 0.500450 | 3:+83867262 | None:intergenic |
| ATCCAATACTTAATTAGAGC+TGG | 0.502293 | 3:-83867068 | MsG0380016465.01.T01:CDS |
| ATGGTGTAGGATATAGGAAC+AGG | 0.502877 | 3:-83866265 | MsG0380016465.01.T01:intron |
| TGCCAGCTCTAATTAAGTAT+TGG | 0.509971 | 3:+83867066 | None:intergenic |
| CCAATCATGGTTTAACAGAC+TGG | 0.510965 | 3:-83867240 | MsG0380016465.01.T01:CDS |
| CATATCTCTATCTTTCGGGT+CGG | 0.512882 | 3:-83867118 | MsG0380016465.01.T01:CDS |
| ATGGTTTAACAGACTGGATG+GGG | 0.515527 | 3:-83867234 | MsG0380016465.01.T01:CDS |
| CTGGTTCAAGCACCAATCCA+TGG | 0.522757 | 3:-83867199 | MsG0380016465.01.T01:CDS |
| TCATGGTTTAACAGACTGGA+TGG | 0.523384 | 3:-83867236 | MsG0380016465.01.T01:CDS |
| CCAAACCAGTGGAGGAATGT+TGG | 0.526760 | 3:-83867415 | MsG0380016465.01.T01:CDS |
| AATATATCAAGCAATGATGA+TGG | 0.536988 | 3:-83867606 | MsG0380016465.01.T01:exon |
| TGATAAGCAAACACTAGGGT+AGG | 0.538954 | 3:+83865474 | None:intergenic |
| GATGGGGTTGGAGACGAGAC+TGG | 0.544491 | 3:-83867218 | MsG0380016465.01.T01:CDS |
| CCATCATGCATCAAGTGTCC+GGG | 0.545387 | 3:+83865993 | None:intergenic |
| TCCGACGGTAGTGAAGAGTC+TGG | 0.546524 | 3:+83867374 | None:intergenic |
| TTTAACAGACTGGATGGGGT+TGG | 0.546711 | 3:-83867230 | MsG0380016465.01.T01:CDS |
| CATGGTTTAACAGACTGGAT+GGG | 0.552177 | 3:-83867235 | MsG0380016465.01.T01:CDS |
| TAGTTTATATATTAAACCGA+AGG | 0.553768 | 3:-83865516 | MsG0380016465.01.T01:three_prime_UTR |
| CAGCATGGCTCGACTAGCTA+AGG | 0.555157 | 3:-83866176 | MsG0380016465.01.T01:CDS |
| TGTATGGACACGCTCTTGGA+CGG | 0.555722 | 3:-83867174 | MsG0380016465.01.T01:CDS |
| TTACTTATATATAGAACTAG+AGG | 0.556459 | 3:+83865639 | None:intergenic |
| TCTACCACAATGCCATCTAA+AGG | 0.559658 | 3:-83867549 | MsG0380016465.01.T01:CDS |
| AAAAGTGGCTCGCTCTTGGA+AGG | 0.559887 | 3:+83866210 | None:intergenic |
| ATACTTAATTAGAGCTGGCA+TGG | 0.560206 | 3:-83867063 | MsG0380016465.01.T01:intron |
| CTCAATTAGGACCACGTGCG+TGG | 0.562488 | 3:-83867574 | MsG0380016465.01.T01:CDS |
| AGTAACCATATAACAATGCC+CGG | 0.565594 | 3:-83866011 | MsG0380016465.01.T01:three_prime_UTR |
| GAGCGTGTCCATACAGCCCA+TGG | 0.565706 | 3:+83867182 | None:intergenic |
| GTACATGATAAGCAAACACT+AGG | 0.569112 | 3:+83865469 | None:intergenic |
| TAGTGACTACATCGATAGCT+TGG | 0.572127 | 3:-83865907 | MsG0380016465.01.T01:three_prime_UTR |
| TATCGCTGTCATCGTCTCTG+TGG | 0.572162 | 3:+83866046 | None:intergenic |
| CCAACGCTTGCATGTATATG+TGG | 0.573043 | 3:-83866142 | MsG0380016465.01.T01:CDS |
| AGTTTATATATTAAACCGAA+GGG | 0.575443 | 3:-83865515 | MsG0380016465.01.T01:three_prime_UTR |
| TGTCCATACAGCCCATGGAT+TGG | 0.576962 | 3:+83867187 | None:intergenic |
| CCACATATACATGCAAGCGT+TGG | 0.581994 | 3:+83866142 | None:intergenic |
| TTAAACCATGATTGGTACGT+TGG | 0.582627 | 3:+83867248 | None:intergenic |
| TGGTTCAAGCACCAATCCAT+GGG | 0.582779 | 3:-83867198 | MsG0380016465.01.T01:CDS |
| GACACGCTCTTGGACGGCTG+AGG | 0.585462 | 3:-83867168 | MsG0380016465.01.T01:CDS |
| ATTCAGTCATTTCTCTGCAG+TGG | 0.588279 | 3:-83865955 | MsG0380016465.01.T01:three_prime_UTR |
| GGCTTGCACCCAAGATTAGG+AGG | 0.589066 | 3:-83865804 | MsG0380016465.01.T01:three_prime_UTR |
| AACAGGAAGTAATCCATACA+AGG | 0.590466 | 3:-83866248 | MsG0380016465.01.T01:CDS |
| GCCAGACTCTTCACTACCGT+CGG | 0.590866 | 3:-83867375 | MsG0380016465.01.T01:CDS |
| TGGAGTTCTTGATTGGACGT+TGG | 0.591629 | 3:-83865887 | MsG0380016465.01.T01:three_prime_UTR |
| CCCGGACACTTGATGCATGA+TGG | 0.596093 | 3:-83865993 | MsG0380016465.01.T01:three_prime_UTR |
| GCCACTAGCCAAACCAGTGG+AGG | 0.597505 | 3:-83867423 | MsG0380016465.01.T01:CDS |
| TACTTATATATAGAACTAGA+GGG | 0.597791 | 3:+83865640 | None:intergenic |
| ACAACGTATTGGTGTGTACA+CGG | 0.599250 | 3:-83865931 | MsG0380016465.01.T01:three_prime_UTR |
| TTGGAGATGGAGAAGCTAGA+GGG | 0.599954 | 3:-83865868 | MsG0380016465.01.T01:three_prime_UTR |
| GCTGCCGTCTGACAGAAAAG+TGG | 0.600013 | 3:+83866195 | None:intergenic |
| GCTAGAGGGTTTGACAAGCG+AGG | 0.609085 | 3:-83865854 | MsG0380016465.01.T01:three_prime_UTR |
| GAAGGCATTAAGGGATCGAA+CGG | 0.611309 | 3:-83867333 | MsG0380016465.01.T01:CDS |
| AGAAATGACTGAATAGGTGT+GGG | 0.611780 | 3:+83865964 | None:intergenic |
| CGTGCACAAGAGATCGTGTG+TGG | 0.620067 | 3:-83865826 | MsG0380016465.01.T01:three_prime_UTR |
| ACGGCTGAGGAGAATAGGCA+TGG | 0.622537 | 3:-83867155 | MsG0380016465.01.T01:CDS |
| GATAAGCAAACACTAGGGTA+GGG | 0.622620 | 3:+83865475 | None:intergenic |
| GGATCATTGCAAACTTCTAG+AGG | 0.626657 | 3:-83866075 | MsG0380016465.01.T01:exon |
| CTAGAGGGTTTGACAAGCGA+GGG | 0.626748 | 3:-83865853 | MsG0380016465.01.T01:three_prime_UTR |
| TCATTGCAAACTTCTAGAGG+TGG | 0.636963 | 3:-83866072 | MsG0380016465.01.T01:exon |
| TGAGTTCATCGATCAAGTGA+AGG | 0.637744 | 3:-83867351 | MsG0380016465.01.T01:CDS |
| GCCACGAGATTGCATATGAG+AGG | 0.641136 | 3:-83866096 | MsG0380016465.01.T01:CDS |
| GAGAAATGACTGAATAGGTG+TGG | 0.645655 | 3:+83865963 | None:intergenic |
| TCCTCTCATATGCAATCTCG+TGG | 0.655385 | 3:+83866095 | None:intergenic |
| GTTGGAGATGGAGAAGCTAG+AGG | 0.655419 | 3:-83865869 | MsG0380016465.01.T01:three_prime_UTR |
| CTTGCTGCTTAGAGAAACAA+CGG | 0.655951 | 3:+83867631 | None:intergenic |
| TACATGATAAGCAAACACTA+GGG | 0.657994 | 3:+83865470 | None:intergenic |
| GGGGCCTTTAGATGGCATTG+TGG | 0.664695 | 3:+83867545 | None:intergenic |
| GTGCACAAGAGATCGTGTGT+GGG | 0.665993 | 3:-83865825 | MsG0380016465.01.T01:three_prime_UTR |
| GCTCGACTAGCTAAGGAGAG+AGG | 0.671356 | 3:-83866169 | MsG0380016465.01.T01:CDS |
| TGTGGTAGAATCCACGCACG+TGG | 0.679284 | 3:+83867563 | None:intergenic |
| TCGCTGTCATCGTCTCTGTG+GGG | 0.704169 | 3:+83866048 | None:intergenic |
| TGATCGATGAACTCATCCGA+CGG | 0.705040 | 3:+83867359 | None:intergenic |
| GCTGCCACTAGCCAAACCAG+TGG | 0.706140 | 3:-83867426 | MsG0380016465.01.T01:CDS |
| GAGTCTGGCAACAAATCATG+TGG | 0.719794 | 3:+83867389 | None:intergenic |
| AGTGGGTGACATGATCACCG+AGG | 0.783297 | 3:-83867279 | MsG0380016465.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCTATATATAAGTAAAATTT+GGG | - | Chr3:83867437-83867456 | MsG0380016465.01.T01:CDS | 10.0% |
| !! | TTCTATATATAAGTAAAATT+TGG | - | Chr3:83867436-83867455 | MsG0380016465.01.T01:CDS | 10.0% |
| !! | TTTAATATATAAACTAAAAC+TGG | + | Chr3:83867548-83867567 | None:intergenic | 10.0% |
| !! | CTTAATCATAAATGAAATAA+CGG | + | Chr3:83866441-83866460 | None:intergenic | 15.0% |
| !! | TAAAATTAATTGATTGCTTA+TGG | - | Chr3:83866784-83866803 | MsG0380016465.01.T01:intron | 15.0% |
| !! | TATTTCATTTATGATTAAGA+TGG | - | Chr3:83866442-83866461 | MsG0380016465.01.T01:intron | 15.0% |
| !!! | AGTCTAAAATAATTGTTATA+TGG | - | Chr3:83866483-83866502 | MsG0380016465.01.T01:intron | 15.0% |
| !!! | ATGATATTTTTTATACACAT+CGG | + | Chr3:83866164-83866183 | None:intergenic | 15.0% |
| !! | AAAACTACAAAATAATCGTT+TGG | + | Chr3:83865769-83865788 | None:intergenic | 20.0% |
| !! | AAAAGTGGAAGAAATATTAT+AGG | - | Chr3:83866391-83866410 | MsG0380016465.01.T01:intron | 20.0% |
| !! | AGTTTATATATTAAACCGAA+GGG | - | Chr3:83867553-83867572 | MsG0380016465.01.T01:CDS | 20.0% |
| !! | TACTTATATATAGAACTAGA+GGG | + | Chr3:83867431-83867450 | None:intergenic | 20.0% |
| !! | TAGTTTATATATTAAACCGA+AGG | - | Chr3:83867552-83867571 | MsG0380016465.01.T01:CDS | 20.0% |
| !! | TTACTTATATATAGAACTAG+AGG | + | Chr3:83867432-83867451 | None:intergenic | 20.0% |
| !!! | ATATCTTTCCATATTCATTT+TGG | - | Chr3:83866323-83866342 | MsG0380016465.01.T01:intron | 20.0% |
| !!! | CTTGAAAATTTCTTTCTTTT+CGG | + | Chr3:83865593-83865612 | None:intergenic | 20.0% |
| !!! | GATTATTTTGTAGTTTTAGT+GGG | - | Chr3:83865772-83865791 | MsG0380016465.01.T01:three_prime_UTR | 20.0% |
| !!! | TATCTTTCCATATTCATTTT+GGG | - | Chr3:83866324-83866343 | MsG0380016465.01.T01:intron | 20.0% |
| !!! | TGGTAAAGATTTAAAAGTAT+GGG | + | Chr3:83866352-83866371 | None:intergenic | 20.0% |
| !!! | TTGAAAATTTCTTTCTTTTC+GGG | + | Chr3:83865592-83865611 | None:intergenic | 20.0% |
| ! | AAAACATATCTCTATCTTTC+GGG | - | Chr3:83865946-83865965 | MsG0380016465.01.T01:three_prime_UTR | 25.0% |
| ! | AATATATCAAGCAATGATGA+TGG | - | Chr3:83865462-83865481 | MsG0380016465.01.T01:three_prime_UTR | 25.0% |
| ! | AATTTGTGTGGATCAATTTA+CGG | - | Chr3:83866207-83866226 | MsG0380016465.01.T01:CDS | 25.0% |
| ! | ATATTATAAGATACTCCCTT+CGG | + | Chr3:83867571-83867590 | None:intergenic | 25.0% |
| ! | ATCATCCATGTAAAAAAACA+GGG | + | Chr3:83866744-83866763 | None:intergenic | 25.0% |
| ! | ATTACCAAAAAAATTGTGTG+TGG | + | Chr3:83866578-83866597 | None:intergenic | 25.0% |
| ! | ATTCTTACTTTGTTCCTTAA+AGG | - | Chr3:83866658-83866677 | MsG0380016465.01.T01:intron | 25.0% |
| ! | CAAAACATATCTCTATCTTT+CGG | - | Chr3:83865945-83865964 | MsG0380016465.01.T01:three_prime_UTR | 25.0% |
| ! | CTGGTAAAGATTTAAAAGTA+TGG | + | Chr3:83866353-83866372 | None:intergenic | 25.0% |
| ! | TATCATCCATGTAAAAAAAC+AGG | + | Chr3:83866745-83866764 | None:intergenic | 25.0% |
| ! | TTAAAATCAGAGAAGATATC+TGG | + | Chr3:83866372-83866391 | None:intergenic | 25.0% |
| ! | TTACCAAAAAAATTGTGTGT+GGG | + | Chr3:83866577-83866596 | None:intergenic | 25.0% |
| ! | TTCTTACTTTGTTCCTTAAA+GGG | - | Chr3:83866659-83866678 | MsG0380016465.01.T01:intron | 25.0% |
| !! | AATTTTTGTGCACTTTCATT+TGG | + | Chr3:83867363-83867382 | None:intergenic | 25.0% |
| !! | ATCTTTCCATATTCATTTTG+GGG | - | Chr3:83866325-83866344 | MsG0380016465.01.T01:intron | 25.0% |
| !!! | ACAATTTTTTTGGTAATGCT+TGG | - | Chr3:83866581-83866600 | MsG0380016465.01.T01:intron | 25.0% |
| !!! | CGATTATTTTGTAGTTTTAG+TGG | - | Chr3:83865771-83865790 | MsG0380016465.01.T01:three_prime_UTR | 25.0% |
| !!! | TCTTCTCTGATTTTAAAAAG+TGG | - | Chr3:83866376-83866395 | MsG0380016465.01.T01:intron | 25.0% |
| AGATGAAACCTAAGTTTAGT+TGG | - | Chr3:83867318-83867337 | MsG0380016465.01.T01:CDS | 30.0% | |
| ATCCAATACTTAATTAGAGC+TGG | - | Chr3:83866000-83866019 | MsG0380016465.01.T01:three_prime_UTR | 30.0% | |
| CATTCAAATGTGAATTTGTG+TGG | - | Chr3:83866195-83866214 | MsG0380016465.01.T01:CDS | 30.0% | |
| GATGAAACCTAAGTTTAGTT+GGG | - | Chr3:83867319-83867338 | MsG0380016465.01.T01:CDS | 30.0% | |
| GTAAAAAAACAGGGTAATGT+AGG | + | Chr3:83866735-83866754 | None:intergenic | 30.0% | |
| TAATTGATTGCTTATGGTGT+AGG | - | Chr3:83866790-83866809 | MsG0380016465.01.T01:intron | 30.0% | |
| TACATGATAAGCAAACACTA+GGG | + | Chr3:83867601-83867620 | None:intergenic | 30.0% | |
| TACCAAAAAAATTGTGTGTG+GGG | + | Chr3:83866576-83866595 | None:intergenic | 30.0% | |
| ! | AGACATTGAGTATGTCTTTT+GGG | + | Chr3:83865569-83865588 | None:intergenic | 30.0% |
| ! | TAGACTTTTACAAAGAGAGA+GGG | + | Chr3:83866469-83866488 | None:intergenic | 30.0% |
| ! | TTAGACTTTTACAAAGAGAG+AGG | + | Chr3:83866470-83866489 | None:intergenic | 30.0% |
| ! | TTTCAAGTCATTAGAGAGTT+GGG | - | Chr3:83865606-83865625 | MsG0380016465.01.T01:three_prime_UTR | 30.0% |
| !! | TCCATCCATATGATTTTGAT+CGG | + | Chr3:83866698-83866717 | None:intergenic | 30.0% |
| !!! | AGTATGTCTTTTGGGATTTT+AGG | + | Chr3:83865561-83865580 | None:intergenic | 30.0% |
| !!! | CATTACCCTGTTTTTTTACA+TGG | - | Chr3:83866736-83866755 | MsG0380016465.01.T01:intron | 30.0% |
| !!! | TTGGGATTTTAGGACTTTTT+GGG | + | Chr3:83865551-83865570 | None:intergenic | 30.0% |
| !!! | TTTGGGATTTTAGGACTTTT+TGG | + | Chr3:83865552-83865571 | None:intergenic | 30.0% |
| !!! | TTTTCAAGTCATTAGAGAGT+TGG | - | Chr3:83865605-83865624 | MsG0380016465.01.T01:three_prime_UTR | 30.0% |
| AACAGGAAGTAATCCATACA+AGG | - | Chr3:83866820-83866839 | MsG0380016465.01.T01:intron | 35.0% | |
| AGAAATGACTGAATAGGTGT+GGG | + | Chr3:83867107-83867126 | None:intergenic | 35.0% | |
| AGTAACCATATAACAATGCC+CGG | - | Chr3:83867057-83867076 | MsG0380016465.01.T01:intron | 35.0% | |
| ATACTTAATTAGAGCTGGCA+TGG | - | Chr3:83866005-83866024 | MsG0380016465.01.T01:three_prime_UTR | 35.0% | |
| ATCCATTCTACACATTGGAT+CGG | - | Chr3:83866616-83866635 | MsG0380016465.01.T01:intron | 35.0% | |
| ATGTGTAGAATGGATGAATG+TGG | + | Chr3:83866611-83866630 | None:intergenic | 35.0% | |
| CATGCAAATACTCACATAAG+AGG | + | Chr3:83866282-83866301 | None:intergenic | 35.0% | |
| CATTCATCCATTCTACACAT+TGG | - | Chr3:83866611-83866630 | MsG0380016465.01.T01:intron | 35.0% | |
| GTACATGATAAGCAAACACT+AGG | + | Chr3:83867602-83867621 | None:intergenic | 35.0% | |
| TTAAACCATGATTGGTACGT+TGG | + | Chr3:83865823-83865842 | None:intergenic | 35.0% | |
| TTGCTTATGGTGTAGGATAT+AGG | - | Chr3:83866797-83866816 | MsG0380016465.01.T01:intron | 35.0% | |
| ! | AGACTTTTACAAAGAGAGAG+GGG | + | Chr3:83866468-83866487 | None:intergenic | 35.0% |
| ! | GAGACATTGAGTATGTCTTT+TGG | + | Chr3:83865570-83865589 | None:intergenic | 35.0% |
| ! | TGCCAGCTCTAATTAAGTAT+TGG | + | Chr3:83866005-83866024 | None:intergenic | 35.0% |
| !! | CCATCCATATGATTTTGATC+GGG | + | Chr3:83866697-83866716 | None:intergenic | 35.0% |
| !!! | ATTTTAGGACTTTTTGGGAC+GGG | + | Chr3:83865546-83865565 | None:intergenic | 35.0% |
| !!! | GATTTTAGGACTTTTTGGGA+CGG | + | Chr3:83865547-83865566 | None:intergenic | 35.0% |
| !!! | TTCCCCACACACAATTTTTT+TGG | - | Chr3:83866571-83866590 | MsG0380016465.01.T01:intron | 35.0% |
| AAACAGGGTAATGTAGGTGA+TGG | + | Chr3:83866729-83866748 | None:intergenic | 40.0% | |
| ATGGCAATGTGCACTCAATT+AGG | - | Chr3:83865481-83865500 | MsG0380016465.01.T01:three_prime_UTR | 40.0% | |
| ATGGGACCCCAAAATGAATA+TGG | + | Chr3:83866334-83866353 | None:intergenic | 40.0% | |
| ATGGTGTAGGATATAGGAAC+AGG | - | Chr3:83866803-83866822 | MsG0380016465.01.T01:intron | 40.0% | |
| ATGGTTTAACAGACTGGATG+GGG | - | Chr3:83865834-83865853 | MsG0380016465.01.T01:three_prime_UTR | 40.0% | |
| ATTCAGTCATTTCTCTGCAG+TGG | - | Chr3:83867113-83867132 | MsG0380016465.01.T01:CDS | 40.0% | |
| CATGGTTTAACAGACTGGAT+GGG | - | Chr3:83865833-83865852 | MsG0380016465.01.T01:three_prime_UTR | 40.0% | |
| CCAATCATGGTTTAACAGAC+TGG | - | Chr3:83865828-83865847 | MsG0380016465.01.T01:three_prime_UTR | 40.0% | |
| CCAGTCTGTTAAACCATGAT+TGG | + | Chr3:83865831-83865850 | None:intergenic | 40.0% | |
| CCCGATCAAAATCATATGGA+TGG | - | Chr3:83866694-83866713 | MsG0380016465.01.T01:intron | 40.0% | |
| CTGCAGAGAAATGACTGAAT+AGG | + | Chr3:83867113-83867132 | None:intergenic | 40.0% | |
| GAGAAATGACTGAATAGGTG+TGG | + | Chr3:83867108-83867127 | None:intergenic | 40.0% | |
| GATAAGCAAACACTAGGGTA+GGG | + | Chr3:83867596-83867615 | None:intergenic | 40.0% | |
| GATAGCTTGGAGTTCTTGAT+TGG | - | Chr3:83867174-83867193 | MsG0380016465.01.T01:CDS | 40.0% | |
| GGATCATTGCAAACTTCTAG+AGG | - | Chr3:83866993-83867012 | MsG0380016465.01.T01:intron | 40.0% | |
| TAGTGACTACATCGATAGCT+TGG | - | Chr3:83867161-83867180 | MsG0380016465.01.T01:CDS | 40.0% | |
| TCATGGTTTAACAGACTGGA+TGG | - | Chr3:83865832-83865851 | MsG0380016465.01.T01:three_prime_UTR | 40.0% | |
| TCGAAGACCCAACTAAACTT+AGG | + | Chr3:83867329-83867348 | None:intergenic | 40.0% | |
| TCTACCACAATGCCATCTAA+AGG | - | Chr3:83865519-83865538 | MsG0380016465.01.T01:three_prime_UTR | 40.0% | |
| TGAGTTCATCGATCAAGTGA+AGG | - | Chr3:83865717-83865736 | MsG0380016465.01.T01:three_prime_UTR | 40.0% | |
| TGATAAGCAAACACTAGGGT+AGG | + | Chr3:83867597-83867616 | None:intergenic | 40.0% | |
| ! | ACAACGTATTGGTGTGTACA+CGG | - | Chr3:83867137-83867156 | MsG0380016465.01.T01:CDS | 40.0% |
| ! | ATATCTCTATCTTTCGGGTC+GGG | - | Chr3:83865951-83865970 | MsG0380016465.01.T01:three_prime_UTR | 40.0% |
| ! | CATATCTCTATCTTTCGGGT+CGG | - | Chr3:83865950-83865969 | MsG0380016465.01.T01:three_prime_UTR | 40.0% |
| ! | CTTGCTGCTTAGAGAAACAA+CGG | + | Chr3:83865440-83865459 | None:intergenic | 40.0% |
| ! | GCATAAGCAAAAGCCTTGTA+TGG | + | Chr3:83866836-83866855 | None:intergenic | 40.0% |
| ! | TCATTGCAAACTTCTAGAGG+TGG | - | Chr3:83866996-83867015 | MsG0380016465.01.T01:intron | 40.0% |
| ! | TCCTTAAAGGGTGTGAATGT+GGG | - | Chr3:83866671-83866690 | MsG0380016465.01.T01:intron | 40.0% |
| ! | TTCCTTAAAGGGTGTGAATG+TGG | - | Chr3:83866670-83866689 | MsG0380016465.01.T01:intron | 40.0% |
| !! | CGATCAAGTGAAGGCATTAA+GGG | - | Chr3:83865726-83865745 | MsG0380016465.01.T01:three_prime_UTR | 40.0% |
| !! | TCGATCAAGTGAAGGCATTA+AGG | - | Chr3:83865725-83865744 | MsG0380016465.01.T01:three_prime_UTR | 40.0% |
| !!! | TTTTAGGACTTTTTGGGACG+GGG | + | Chr3:83865545-83865564 | None:intergenic | 40.0% |
| ACCATCATGCATCAAGTGTC+CGG | + | Chr3:83867079-83867098 | None:intergenic | 45.0% | |
| CATTGCCAACGTACCAATCA+TGG | - | Chr3:83865815-83865834 | MsG0380016465.01.T01:three_prime_UTR | 45.0% | |
| CCAACGCTTGCATGTATATG+TGG | - | Chr3:83866926-83866945 | MsG0380016465.01.T01:intron | 45.0% | |
| CCACATATACATGCAAGCGT+TGG | + | Chr3:83866929-83866948 | None:intergenic | 45.0% | |
| GACCGATCCAATGTGTAGAA+TGG | + | Chr3:83866621-83866640 | None:intergenic | 45.0% | |
| GAGTCTGGCAACAAATCATG+TGG | + | Chr3:83865682-83865701 | None:intergenic | 45.0% | |
| TCCTCTCATATGCAATCTCG+TGG | + | Chr3:83866976-83866995 | None:intergenic | 45.0% | |
| TCTTGATTGGACGTTGGAGA+TGG | - | Chr3:83867187-83867206 | MsG0380016465.01.T01:CDS | 45.0% | |
| TCTTGCAGCCTCCTAATCTT+GGG | + | Chr3:83867275-83867294 | None:intergenic | 45.0% | |
| TGATCGATGAACTCATCCGA+CGG | + | Chr3:83865712-83865731 | None:intergenic | 45.0% | |
| TGGAGTTCTTGATTGGACGT+TGG | - | Chr3:83867181-83867200 | MsG0380016465.01.T01:CDS | 45.0% | |
| TGGGCCCGATCAAAATCATA+TGG | - | Chr3:83866690-83866709 | MsG0380016465.01.T01:intron | 45.0% | |
| TGGTTCAAGCACCAATCCAT+GGG | - | Chr3:83865870-83865889 | MsG0380016465.01.T01:three_prime_UTR | 45.0% | |
| TTGGAGATGGAGAAGCTAGA+GGG | - | Chr3:83867200-83867219 | MsG0380016465.01.T01:CDS | 45.0% | |
| TTTAACAGACTGGATGGGGT+TGG | - | Chr3:83865838-83865857 | MsG0380016465.01.T01:three_prime_UTR | 45.0% | |
| ! | AGTGTCCGGGCATTGTTATA+TGG | + | Chr3:83867065-83867084 | None:intergenic | 45.0% |
| !! | GAAGGCATTAAGGGATCGAA+CGG | - | Chr3:83865735-83865754 | MsG0380016465.01.T01:three_prime_UTR | 45.0% |
| AAAAGTGGCTCGCTCTTGGA+AGG | + | Chr3:83866861-83866880 | None:intergenic | 50.0% | |
| ACAGAAAAGTGGCTCGCTCT+TGG | + | Chr3:83866865-83866884 | None:intergenic | 50.0% | |
| ATCGCTGTCATCGTCTCTGT+GGG | + | Chr3:83867024-83867043 | None:intergenic | 50.0% | |
| CCAAACCAGTGGAGGAATGT+TGG | - | Chr3:83865653-83865672 | MsG0380016465.01.T01:three_prime_UTR | 50.0% | |
| CCATCATGCATCAAGTGTCC+GGG | + | Chr3:83867078-83867097 | None:intergenic | 50.0% | |
| CTAGAGGGTTTGACAAGCGA+GGG | - | Chr3:83867215-83867234 | MsG0380016465.01.T01:CDS | 50.0% | |
| CTCTTGCAGCCTCCTAATCT+TGG | + | Chr3:83867276-83867295 | None:intergenic | 50.0% | |
| CTGGTTCAAGCACCAATCCA+TGG | - | Chr3:83865869-83865888 | MsG0380016465.01.T01:three_prime_UTR | 50.0% | |
| GCCACGAGATTGCATATGAG+AGG | - | Chr3:83866972-83866991 | MsG0380016465.01.T01:intron | 50.0% | |
| GCCCACATTCACACCCTTTA+AGG | + | Chr3:83866675-83866694 | None:intergenic | 50.0% | |
| GTACGTTGGCAATGCTTCCT+CGG | + | Chr3:83865809-83865828 | None:intergenic | 50.0% | |
| GTGCACAAGAGATCGTGTGT+GGG | - | Chr3:83867243-83867262 | MsG0380016465.01.T01:CDS | 50.0% | |
| GTTGGAGATGGAGAAGCTAG+AGG | - | Chr3:83867199-83867218 | MsG0380016465.01.T01:CDS | 50.0% | |
| TATCGCTGTCATCGTCTCTG+TGG | + | Chr3:83867025-83867044 | None:intergenic | 50.0% | |
| TCTGCAGTGGCACAACGTAT+TGG | - | Chr3:83867126-83867145 | MsG0380016465.01.T01:CDS | 50.0% | |
| TGTATGGACACGCTCTTGGA+CGG | - | Chr3:83865894-83865913 | MsG0380016465.01.T01:three_prime_UTR | 50.0% | |
| TGTCCATACAGCCCATGGAT+TGG | + | Chr3:83865884-83865903 | None:intergenic | 50.0% | |
| ! | CCAACATTCCTCCACTGGTT+TGG | + | Chr3:83865656-83865675 | None:intergenic | 50.0% |
| ! | TTTTCTGTCAGACGGCAGCA+TGG | - | Chr3:83866877-83866896 | MsG0380016465.01.T01:intron | 50.0% |
| !! | GGGTCGGGTTGATATGTTCA+TGG | - | Chr3:83865966-83865985 | MsG0380016465.01.T01:three_prime_UTR | 50.0% |
| !!! | CGAGCCACTTTTCTGTCAGA+CGG | - | Chr3:83866869-83866888 | MsG0380016465.01.T01:intron | 50.0% |
| ACGGCTGAGGAGAATAGGCA+TGG | - | Chr3:83865913-83865932 | MsG0380016465.01.T01:three_prime_UTR | 55.0% | |
| AGTGGGTGACATGATCACCG+AGG | - | Chr3:83865789-83865808 | MsG0380016465.01.T01:three_prime_UTR | 55.0% | |
| CCCGGACACTTGATGCATGA+TGG | - | Chr3:83867075-83867094 | MsG0380016465.01.T01:CDS | 55.0% | |
| CGTGCACAAGAGATCGTGTG+TGG | - | Chr3:83867242-83867261 | MsG0380016465.01.T01:CDS | 55.0% | |
| CTCAATTAGGACCACGTGCG+TGG | - | Chr3:83865494-83865513 | MsG0380016465.01.T01:three_prime_UTR | 55.0% | |
| CTTGGACGGCTGAGGAGAAT+AGG | - | Chr3:83865908-83865927 | MsG0380016465.01.T01:three_prime_UTR | 55.0% | |
| GCCAGACTCTTCACTACCGT+CGG | - | Chr3:83865693-83865712 | MsG0380016465.01.T01:three_prime_UTR | 55.0% | |
| GCTAGAGGGTTTGACAAGCG+AGG | - | Chr3:83867214-83867233 | MsG0380016465.01.T01:CDS | 55.0% | |
| GCTGCCGTCTGACAGAAAAG+TGG | + | Chr3:83866876-83866895 | None:intergenic | 55.0% | |
| GGCTTGCACCCAAGATTAGG+AGG | - | Chr3:83867264-83867283 | MsG0380016465.01.T01:CDS | 55.0% | |
| GGGGCCTTTAGATGGCATTG+TGG | + | Chr3:83865526-83865545 | None:intergenic | 55.0% | |
| GTGGGCTTGCACCCAAGATT+AGG | - | Chr3:83867261-83867280 | MsG0380016465.01.T01:CDS | 55.0% | |
| TCCGACGGTAGTGAAGAGTC+TGG | + | Chr3:83865697-83865716 | None:intergenic | 55.0% | |
| TCGCTGTCATCGTCTCTGTG+GGG | + | Chr3:83867023-83867042 | None:intergenic | 55.0% | |
| TGTGGTAGAATCCACGCACG+TGG | + | Chr3:83865508-83865527 | None:intergenic | 55.0% | |
| ! | CAGCATGGCTCGACTAGCTA+AGG | - | Chr3:83866892-83866911 | MsG0380016465.01.T01:intron | 55.0% |
| ! | GCACCAATCCATGGGCTGTA+TGG | - | Chr3:83865878-83865897 | MsG0380016465.01.T01:three_prime_UTR | 55.0% |
| ! | GCTCGACTAGCTAAGGAGAG+AGG | - | Chr3:83866899-83866918 | MsG0380016465.01.T01:intron | 55.0% |
| ! | TTTGGGACGGGGCCTTTAGA+TGG | + | Chr3:83865534-83865553 | None:intergenic | 55.0% |
| !! | TCCTCCACTGGTTTGGCTAG+TGG | + | Chr3:83865649-83865668 | None:intergenic | 55.0% |
| GAGCGTGTCCATACAGCCCA+TGG | + | Chr3:83865889-83865908 | None:intergenic | 60.0% | |
| GATGGGGTTGGAGACGAGAC+TGG | - | Chr3:83865850-83865869 | MsG0380016465.01.T01:three_prime_UTR | 60.0% | |
| GCCACTAGCCAAACCAGTGG+AGG | - | Chr3:83865645-83865664 | MsG0380016465.01.T01:three_prime_UTR | 60.0% | |
| GCTGCCACTAGCCAAACCAG+TGG | - | Chr3:83865642-83865661 | MsG0380016465.01.T01:three_prime_UTR | 60.0% | |
| GGCTGCCAACATTCCTCCAC+TGG | + | Chr3:83865661-83865680 | None:intergenic | 60.0% | |
| GGGCTGTATGGACACGCTCT+TGG | - | Chr3:83865890-83865909 | MsG0380016465.01.T01:three_prime_UTR | 60.0% | |
| GACACGCTCTTGGACGGCTG+AGG | - | Chr3:83865900-83865919 | MsG0380016465.01.T01:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 83865433 | 83867657 | 83865433 | ID=MsG0380016465.01;Name=MsG0380016465.01 |
| Chr3 | mRNA | 83865433 | 83867657 | 83865433 | ID=MsG0380016465.01.T01;Parent=MsG0380016465.01;Name=MsG0380016465.01.T01;_AED=0.45;_eAED=0.45;_QI=42|1|1|1|1|1|2|645|250 |
| Chr3 | exon | 83865433 | 83866278 | 83865433 | ID=MsG0380016465.01.T01:exon:14132;Parent=MsG0380016465.01.T01 |
| Chr3 | exon | 83867064 | 83867657 | 83867064 | ID=MsG0380016465.01.T01:exon:14131;Parent=MsG0380016465.01.T01 |
| Chr3 | five_prime_UTR | 83867616 | 83867657 | 83867616 | ID=MsG0380016465.01.T01:five_prime_utr;Parent=MsG0380016465.01.T01 |
| Chr3 | CDS | 83867064 | 83867615 | 83867064 | ID=MsG0380016465.01.T01:cds;Parent=MsG0380016465.01.T01 |
| Chr3 | CDS | 83866078 | 83866278 | 83866078 | ID=MsG0380016465.01.T01:cds;Parent=MsG0380016465.01.T01 |
| Chr3 | three_prime_UTR | 83865433 | 83866077 | 83865433 | ID=MsG0380016465.01.T01:three_prime_utr;Parent=MsG0380016465.01.T01 |
| Gene Sequence |
| Protein sequence |
