AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035683.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035683.01.T01 MTR_6g087700 97.403 462 10 2 1 460 88 549 0.0 917
MsG0680035683.01.T01 MTR_2g101830 64.642 461 142 7 8 460 86 533 0.0 576
MsG0680035683.01.T01 MTR_4g013165 62.195 410 137 9 59 460 1 400 1.10e-170 485
MsG0680035683.01.T01 MTR_7g065220 55.108 372 146 4 7 358 183 553 2.28e-143 425
MsG0680035683.01.T01 MTR_4g019770 54.447 371 153 4 3 358 91 460 1.06e-136 404
MsG0680035683.01.T01 MTR_4g075640 52.533 375 160 5 7 364 86 459 1.64e-132 394
MsG0680035683.01.T01 MTR_3g069590 50.653 383 163 5 7 370 99 474 3.88e-131 392
MsG0680035683.01.T01 MTR_5g081410 51.316 380 159 5 10 370 84 456 6.13e-131 390
MsG0680035683.01.T01 MTR_8g030850 47.074 376 174 5 7 358 96 470 8.58e-120 358
MsG0680035683.01.T01 MTR_7g077690 43.780 418 167 7 8 358 113 529 3.16e-110 336
MsG0680035683.01.T01 MTR_3g069590 49.102 334 150 4 7 321 99 431 4.60e-110 332
MsG0680035683.01.T01 MTR_5g025960 45.378 357 183 6 7 353 117 471 1.20e-98 307
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035683.01.T01 AT4G13240 63.341 461 152 6 4 460 70 517 0.0 578
MsG0680035683.01.T01 AT3G24620 65.487 452 140 6 10 460 87 523 0.0 577
MsG0680035683.01.T01 AT1G79860 62.719 456 127 11 12 460 96 515 0.0 541
MsG0680035683.01.T01 AT1G52240 62.031 453 150 7 12 460 108 542 0.0 540
MsG0680035683.01.T01 AT5G19560 57.451 463 176 7 7 460 43 493 1.35e-176 504
MsG0680035683.01.T01 AT5G19560 57.451 463 176 7 7 460 43 493 1.35e-176 504
MsG0680035683.01.T01 AT5G19560 57.451 463 176 7 7 460 62 512 2.47e-176 504
MsG0680035683.01.T01 AT3G16130 54.957 464 179 10 7 458 89 534 2.34e-165 477
MsG0680035683.01.T01 AT5G19560 66.038 318 104 2 7 321 62 378 1.53e-149 431
MsG0680035683.01.T01 AT5G02010 49.038 416 187 7 7 398 69 483 8.02e-139 410
MsG0680035683.01.T01 AT4G38430 51.000 400 172 6 7 383 89 487 3.28e-136 403
MsG0680035683.01.T01 AT5G19560 55.256 371 145 7 99 460 5 363 5.50e-130 380
MsG0680035683.01.T01 AT5G05940 50.943 371 160 4 8 357 102 471 3.67e-129 387
MsG0680035683.01.T01 AT4G00460 50.000 364 163 6 8 353 104 466 2.42e-122 365
MsG0680035683.01.T01 AT4G00460 50.000 364 163 6 8 353 104 466 2.42e-122 365
MsG0680035683.01.T01 AT3G55660 48.767 365 166 5 7 352 106 468 5.48e-119 360
MsG0680035683.01.T01 AT1G01700 48.352 364 169 6 8 353 116 478 1.49e-117 353
MsG0680035683.01.T01 AT2G45890 47.185 373 170 6 8 358 93 460 3.83e-115 346
MsG0680035683.01.T01 AT1G01700 44.670 394 169 7 8 353 116 508 4.30e-111 338
MsG0680035683.01.T01 AT5G05940 49.552 335 147 4 8 321 102 435 1.24e-110 335
MsG0680035683.01.T01 AT3G55660 47.305 334 155 5 7 321 106 437 1.55e-103 315
MsG0680035683.01.T01 AT4G00460 47.401 327 153 6 45 353 8 333 2.81e-102 309
MsG0680035683.01.T01 AT1G31650 42.204 372 201 5 8 368 108 476 2.15e-97 303
MsG0680035683.01.T01 AT1G31650 42.204 372 201 5 8 368 136 504 5.76e-97 303
MsG0680035683.01.T01 AT1G01700 45.428 339 159 7 8 321 116 453 7.30e-97 299
MsG0680035683.01.T01 AT4G00460 52.535 217 93 3 8 215 104 319 8.92e-74 236
MsG0680035683.01.T01 AT1G01700 51.152 217 96 3 8 215 116 331 3.38e-71 230
MsG0680035683.01.T01 AT1G01700 51.152 217 96 3 8 215 116 331 3.38e-71 230

Find 95 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTTAACATTGTCTTTC+TGG 0.097808 6:+110687735 None:intergenic
TTAGAGATCAAAATGAATTT+TGG 0.195115 6:-110687889 MsG0680035683.01.T01:CDS
CCATGGCTGCTTTAAGTACT+TGG 0.282520 6:+110687717 None:intergenic
TTGAAGCTTCTATTGTAATA+TGG 0.285225 6:-110687357 MsG0680035683.01.T01:CDS
TTTATCCCATCCTCAGAGTT+TGG 0.309562 6:+110686561 None:intergenic
AATGACTCTCTCAGATTTCA+TGG 0.338997 6:-110686508 MsG0680035683.01.T01:CDS
ACTCTGAGGATGGGATAAAA+AGG 0.344538 6:-110686557 MsG0680035683.01.T01:CDS
AGATTTGCTAAGCTTCTTCT+AGG 0.357290 6:-110689132 MsG0680035683.01.T01:CDS
ATTATACCAGTTGGTGGCTT+AGG 0.357434 6:+110689663 None:intergenic
AATGTAAATATAGGACATTT+TGG 0.362227 6:-110687918 MsG0680035683.01.T01:intron
CGATCTGCTCATGAACATTC+CGG 0.375648 6:-110688059 MsG0680035683.01.T01:CDS
TATACCAGCAAGGTTTGTTA+TGG 0.393796 6:+110689053 None:intergenic
TTGTTATCACCTTGTTGTAT+TGG 0.402712 6:+110687179 None:intergenic
TACTGTGGAATACTTTGATC+CGG 0.414609 6:-110687443 MsG0680035683.01.T01:CDS
CGGCTGGATGCCGCCAACGA+TGG 0.421001 6:+110686627 None:intergenic
TTCAGAAACTGATTTGATGA+AGG 0.432350 6:-110689157 MsG0680035683.01.T01:intron
TGGAAAATCTTCATGGAGTT+CGG 0.432609 6:-110687314 MsG0680035683.01.T01:CDS
GTTGTTAAAGTTCCTCCAAC+AGG 0.433426 6:-110687791 MsG0680035683.01.T01:CDS
GTTGGAGGAACTTTAACAAC+TGG 0.436869 6:+110687794 None:intergenic
GTCTTCCTTTCTTGAGACAT+TGG 0.438853 6:+110688644 None:intergenic
ATAAAGATGGAAAATCTTCA+TGG 0.441204 6:-110687321 MsG0680035683.01.T01:CDS
AAGCTGAGTGTTTACCTCCA+TGG 0.443142 6:+110688529 None:intergenic
TTCAAGAGTAATAGAAAGCT+TGG 0.450795 6:-110686709 MsG0680035683.01.T01:CDS
ATGATCAAACAAGAGTTTCC+AGG 0.451515 6:-110687235 MsG0680035683.01.T01:CDS
AATGCCATAACAAACCTTGC+TGG 0.452672 6:-110689057 MsG0680035683.01.T01:intron
AGTGAAGACTGTGGAAGTCC+TGG 0.455369 6:+110687217 None:intergenic
AAATGGTGTTTCTTCAGCAC+TGG 0.456274 6:-110689088 MsG0680035683.01.T01:CDS
AAGTTCTTGACCTCAAGAAT+AGG 0.466447 6:-110687381 MsG0680035683.01.T01:CDS
GACATGTCAGGTGCAGGAAA+TGG 0.467588 6:-110689105 MsG0680035683.01.T01:CDS
CTTCTATTGTAATATGGAAA+AGG 0.469644 6:-110687351 MsG0680035683.01.T01:CDS
GCATCAAGCTTGCGCAAGGC+CGG 0.472291 6:+110688040 None:intergenic
TCTTGAATAGCTCTCTAGAA+TGG 0.475283 6:+110686725 None:intergenic
CGGTATTAATGTCGCGCGAT+AGG 0.477159 6:+110686336 None:intergenic
TGTCAGATGTAGCTGTGAAA+TGG 0.477439 6:-110687766 MsG0680035683.01.T01:CDS
GGACAAAAGGAGATTTGAAA+AGG 0.479375 6:-110686482 MsG0680035683.01.T01:CDS
ATGCCTCCTAAGCCACCAAC+TGG 0.479648 6:-110689669 MsG0680035683.01.T01:intron
GGAGATGTTTGCTCCGCCAC+TGG 0.480502 6:+110686582 None:intergenic
TACTTGAGCATTTATTGCCA+TGG 0.488291 6:+110687700 None:intergenic
GATTTCATGGGATGGACAAA+AGG 0.489636 6:-110686495 MsG0680035683.01.T01:CDS
AGAGATTCAATGTAGTTGTC+AGG 0.493552 6:+110687659 None:intergenic
CTCGTTGGATTCTTTGCCAG+TGG 0.494386 6:-110686598 MsG0680035683.01.T01:CDS
TTGAAAAGGACTAATTCTAC+AGG 0.501607 6:-110686468 MsG0680035683.01.T01:CDS
GGTGGAGAAAAGAAATTGAA+TGG 0.504792 6:-110688619 MsG0680035683.01.T01:CDS
ACATCTCCAAACTCTGAGGA+TGG 0.512589 6:-110686567 MsG0680035683.01.T01:CDS
ATACCAGTTGGTGGCTTAGG+AGG 0.512969 6:+110689666 None:intergenic
AAAAGGAAGATGAATAAAGA+TGG 0.515789 6:-110687334 MsG0680035683.01.T01:CDS
AAGAATCCAACGAGAATCTC+CGG 0.517591 6:+110686607 None:intergenic
CATCGCATCAAGCTTGCGCA+AGG 0.528390 6:+110688036 None:intergenic
GTCAAGAACTTTATGTTCTG+TGG 0.529156 6:+110687393 None:intergenic
CTCTCTCAGATTTCATGGGA+TGG 0.531255 6:-110686503 MsG0680035683.01.T01:CDS
CTCAAAGAAAGAGTGACAAA+TGG 0.531945 6:-110687823 MsG0680035683.01.T01:CDS
TCCTTAGCTAACTGTTGTGA+TGG 0.535551 6:+110688560 None:intergenic
GGAGAAGACATGTCAGGTGC+AGG 0.536981 6:-110689111 MsG0680035683.01.T01:CDS
GGCAATAAGCATGGAGAAGA+GGG 0.538220 6:-110687293 MsG0680035683.01.T01:CDS
CATCGTTGGCGGCATCCAGC+CGG 0.540395 6:-110686626 MsG0680035683.01.T01:CDS
ACTGTGGAATACTTTGATCC+GGG 0.540800 6:-110687442 MsG0680035683.01.T01:CDS
TGGAGCCAATGTCTCAAGAA+AGG 0.548345 6:-110688649 MsG0680035683.01.T01:CDS
CTTCTAGGAGAAGACATGTC+AGG 0.550196 6:-110689117 MsG0680035683.01.T01:CDS
GTTGGATTCTTTGCCAGTGG+CGG 0.553356 6:-110686595 MsG0680035683.01.T01:CDS
TGCTCAAGTACTATCCGAGA+TGG 0.555455 6:-110687687 MsG0680035683.01.T01:CDS
CCAAGTACTTAAAGCAGCCA+TGG 0.563065 6:-110687717 MsG0680035683.01.T01:CDS
TCACAACAGTTAGCTAAGGA+TGG 0.570145 6:-110688557 MsG0680035683.01.T01:CDS
ATGACTCTCTCAGATTTCAT+GGG 0.572048 6:-110686507 MsG0680035683.01.T01:CDS
GCTACATCTGACAATCCTGT+TGG 0.573819 6:+110687776 None:intergenic
CGGCAATAAGCATGGAGAAG+AGG 0.574710 6:-110687294 MsG0680035683.01.T01:CDS
ACATCTGACAATCCTGTTGG+AGG 0.578270 6:+110687779 None:intergenic
CTACATTGAATCTCTCCCTA+AGG 0.579199 6:-110687651 MsG0680035683.01.T01:intron
AAGCTTCAATCCTATTCTTG+AGG 0.579814 6:+110687371 None:intergenic
ATGGAGTTCGGCAATAAGCA+TGG 0.581044 6:-110687302 MsG0680035683.01.T01:CDS
ATCCAACGAGAATCTCCGGC+TGG 0.581392 6:+110686611 None:intergenic
CATCTCCAAACTCTGAGGAT+GGG 0.582463 6:-110686566 MsG0680035683.01.T01:CDS
ATCCAGCCGGAGATTCTCGT+TGG 0.585511 6:-110686613 MsG0680035683.01.T01:CDS
GACAAAGAATCCATCGTTGG+CGG 0.587221 6:-110686637 MsG0680035683.01.T01:CDS
AAATCTGAGAGAGTCATTGA+TGG 0.588625 6:+110686513 None:intergenic
GTTGTCAGGTATCTCCATCT+CGG 0.591503 6:+110687673 None:intergenic
ATTGTTGAGAGGAATTGTCC+CGG 0.601613 6:+110687424 None:intergenic
TCCATCACAACAGTTAGCTA+AGG 0.603193 6:-110688561 MsG0680035683.01.T01:CDS
ACTTATAGATCGACTCGCCA+AGG 0.607020 6:+110687470 None:intergenic
AAAAGTGATGAGGAAGCTGA+AGG 0.607695 6:-110687857 MsG0680035683.01.T01:CDS
TGTCTCAAGAAAGGAAGACT+AGG 0.613102 6:-110688640 MsG0680035683.01.T01:CDS
AAAGAAAGAGTGACAAATGG+TGG 0.613743 6:-110687820 MsG0680035683.01.T01:CDS
CTCAAGAAAGGAAGACTAGG+TGG 0.617206 6:-110688637 MsG0680035683.01.T01:CDS
AATGACAAAGAATCCATCGT+TGG 0.619614 6:-110686640 MsG0680035683.01.T01:CDS
CAGAATGGTAGAGAAAGCCT+TGG 0.619875 6:-110687487 MsG0680035683.01.T01:CDS
CCAAAATGATCACAGGATGT+GGG 0.631669 6:-110686753 MsG0680035683.01.T01:intron
GGGACAATTCCTCTCAACAA+TGG 0.632556 6:-110687422 MsG0680035683.01.T01:CDS
CAGCAAAATCCAATACAACA+AGG 0.645091 6:-110687188 MsG0680035683.01.T01:intron
GATCTATAAGTGCATTACTG+TGG 0.648265 6:-110687458 MsG0680035683.01.T01:CDS
AGCTAAGGATGGATCAACCA+TGG 0.652900 6:-110688546 MsG0680035683.01.T01:CDS
TTATGTAGATCATGACGACT+CGG 0.677543 6:-110688090 MsG0680035683.01.T01:intron
TGGTCATGTCCATTGTTGAG+AGG 0.679809 6:+110687413 None:intergenic
GCAAACATCTCCAAACTCTG+AGG 0.695037 6:-110686571 MsG0680035683.01.T01:CDS
TCTGAGAGAGTCATTGATGG+TGG 0.705269 6:+110686516 None:intergenic
CTGATATCAAGTGAAGACTG+TGG 0.722584 6:+110687208 None:intergenic
TAAGGATGGATCAACCATGG+AGG 0.766138 6:-110688543 MsG0680035683.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAAACTATAACAA+AGG - Chr6:110686750-110686769 MsG0680035683.01.T01:intron 10.0%
!!! GTTTTTATCAATTTAAAAAA+AGG - Chr6:110686669-110686688 MsG0680035683.01.T01:CDS 10.0%
!! TATTTAATTGATGTATATCA+TGG - Chr6:110687510-110687529 MsG0680035683.01.T01:intron 15.0%
!! TCTTGATTACTATTAAAATT+TGG - Chr6:110688055-110688074 MsG0680035683.01.T01:CDS 15.0%
!!! TTTTTTAATGAAAACAACAT+TGG - Chr6:110687282-110687301 MsG0680035683.01.T01:CDS 15.0%
!! AAAAAAAGAACAAACAAGAT+TGG + Chr6:110689172-110689191 None:intergenic 20.0%
!! ACCAAAGAAAAATTATTACT+TGG - Chr6:110689619-110689638 MsG0680035683.01.T01:intron 20.0%
!! ATGAAAGAAAACAAAAACTT+AGG + Chr6:110688495-110688514 None:intergenic 20.0%
!! GCATAATAACTTAAAATGTA+GGG + Chr6:110686379-110686398 None:intergenic 20.0%
!! GTTAAAATATATCGTCTAAA+GGG + Chr6:110689063-110689082 None:intergenic 20.0%
!! TAAAATTTGGACTAACTTTA+TGG - Chr6:110688068-110688087 MsG0680035683.01.T01:CDS 20.0%
!! TGCATAATAACTTAAAATGT+AGG + Chr6:110686380-110686399 None:intergenic 20.0%
!! TGTTAAAATATATCGTCTAA+AGG + Chr6:110689064-110689083 None:intergenic 20.0%
!!! AATGTAAATATAGGACATTT+TGG - Chr6:110688092-110688111 MsG0680035683.01.T01:intron 20.0%
!!! ATCTTATTCTTGATGATATT+CGG + Chr6:110687746-110687765 None:intergenic 20.0%
!!! CGATTTTAATGTAAAGTTAT+TGG + Chr6:110688915-110688934 None:intergenic 20.0%
!!! TCCAAGTAATAATTTTTCTT+TGG + Chr6:110689623-110689642 None:intergenic 20.0%
!!! TTAGAGATCAAAATGAATTT+TGG - Chr6:110688121-110688140 MsG0680035683.01.T01:intron 20.0%
!!! TTGTATATATTTTCCAAAAG+TGG - Chr6:110687024-110687043 MsG0680035683.01.T01:intron 20.0%
! AAAAGGAAGATGAATAAAGA+TGG - Chr6:110688676-110688695 MsG0680035683.01.T01:CDS 25.0%
! AAATTCAGATAAAAGTGAGT+CGG + Chr6:110688883-110688902 None:intergenic 25.0%
! AAGGTAATATAATTAAGGGT+CGG - Chr6:110688378-110688397 MsG0680035683.01.T01:intron 25.0%
! ACCCTTAATTATATTACCTT+AGG + Chr6:110688378-110688397 None:intergenic 25.0%
! ATAAAGATGGAAAATCTTCA+TGG - Chr6:110688689-110688708 MsG0680035683.01.T01:intron 25.0%
! ATTGATGTATATCATGGATT+CGG - Chr6:110687516-110687535 MsG0680035683.01.T01:intron 25.0%
! CAAAAATGTAGTTACTTACA+AGG + Chr6:110688002-110688021 None:intergenic 25.0%
! CCCTAAGGTAATATAATTAA+GGG - Chr6:110688374-110688393 MsG0680035683.01.T01:intron 25.0%
! CCCTTAATTATATTACCTTA+GGG + Chr6:110688377-110688396 None:intergenic 25.0%
! CTTCTATTGTAATATGGAAA+AGG - Chr6:110688659-110688678 MsG0680035683.01.T01:CDS 25.0%
! CTTTATGGCAATGTAAATAT+AGG - Chr6:110688083-110688102 MsG0680035683.01.T01:CDS 25.0%
! TACATTAAAATCGCTTCTTA+CGG - Chr6:110688922-110688941 MsG0680035683.01.T01:intron 25.0%
! TCCCTAAGGTAATATAATTA+AGG - Chr6:110688373-110688392 MsG0680035683.01.T01:intron 25.0%
! TTGAAGCTTCTATTGTAATA+TGG - Chr6:110688653-110688672 MsG0680035683.01.T01:CDS 25.0%
!! AATGTAAAGTTATTGGTGTT+TGG + Chr6:110688908-110688927 None:intergenic 25.0%
!! ATCTATTTTCTTGTGAATCA+AGG - Chr6:110689196-110689215 MsG0680035683.01.T01:intron 25.0%
!! CTTAGTTCATGACTTTTAAA+TGG + Chr6:110686426-110686445 None:intergenic 25.0%
!! TAAAAAAGTATATACCAGCA+AGG + Chr6:110686970-110686989 None:intergenic 25.0%
!! TTAGAATATGTTTCCACTTT+TGG + Chr6:110687040-110687059 None:intergenic 25.0%
!! TTTTTACCCTCAAATCTTTA+TGG - Chr6:110686984-110687003 MsG0680035683.01.T01:intron 25.0%
!!! GAAAAAGTTTTGAATAAGCT+TGG - Chr6:110689593-110689612 MsG0680035683.01.T01:intron 25.0%
!!! GATTGATGATGTTTTATATG+TGG - Chr6:110689343-110689362 MsG0680035683.01.T01:intron 25.0%
!!! TTTTTTTTGTCTCTACATGA+AGG - Chr6:110686781-110686800 MsG0680035683.01.T01:intron 25.0%
AAAGTCATGAACTAAGATCA+TGG - Chr6:110686430-110686449 MsG0680035683.01.T01:CDS 30.0%
AACTTTAATCGTAACTTCGT+AGG - Chr6:110687162-110687181 MsG0680035683.01.T01:intron 30.0%
AAGATTTGTAGAGAACAACA+TGG - Chr6:110687761-110687780 MsG0680035683.01.T01:CDS 30.0%
AAGTCATGAACTAAGATCAT+GGG - Chr6:110686431-110686450 MsG0680035683.01.T01:CDS 30.0%
AGAAAAATTATACCAGTTGG+TGG + Chr6:110686356-110686375 None:intergenic 30.0%
ATACATCGTTTAGTTGAGTA+TGG - Chr6:110688997-110689016 MsG0680035683.01.T01:intron 30.0%
CTTTATGGTAGGAAATGAAA+TGG - Chr6:110686999-110687018 MsG0680035683.01.T01:intron 30.0%
TTAAGCTGCATATCCAAATA+GGG + Chr6:110688025-110688044 None:intergenic 30.0%
TTCAAGAGTAATAGAAAGCT+TGG - Chr6:110689301-110689320 MsG0680035683.01.T01:intron 30.0%
TTCCTACCATAAAGATTTGA+GGG + Chr6:110686993-110687012 None:intergenic 30.0%
TTGAAAAGGACTAATTCTAC+AGG - Chr6:110689542-110689561 MsG0680035683.01.T01:intron 30.0%
TTTCCTACCATAAAGATTTG+AGG + Chr6:110686994-110687013 None:intergenic 30.0%
! AACTACATTTTTGCCCTATT+TGG - Chr6:110688009-110688028 MsG0680035683.01.T01:intron 30.0%
! ATCTTGAAATTTGAAGTCGT+GGG + Chr6:110687856-110687875 None:intergenic 30.0%
! TTGTTATCACCTTGTTGTAT+TGG + Chr6:110688834-110688853 None:intergenic 30.0%
! TTTTTGTGTGTGTTAGTAGT+CGG - Chr6:110686555-110686574 MsG0680035683.01.T01:CDS 30.0%
!! TGACAATTACGATTTGTTGA+CGG + Chr6:110687125-110687144 None:intergenic 30.0%
!! TTCAGAAACTGATTTGATGA+AGG - Chr6:110686853-110686872 MsG0680035683.01.T01:intron 30.0%
!! TTTTGGAGAACAATCAAAGT+TGG - Chr6:110687341-110687360 MsG0680035683.01.T01:CDS 30.0%
AAAGAAAGAGTGACAAATGG+TGG - Chr6:110688190-110688209 MsG0680035683.01.T01:intron 35.0%
AAATCTGAGAGAGTCATTGA+TGG + Chr6:110689500-110689519 None:intergenic 35.0%
AAGCTTCAATCCTATTCTTG+AGG + Chr6:110688642-110688661 None:intergenic 35.0%
AAGTTCTTGACCTCAAGAAT+AGG - Chr6:110688629-110688648 MsG0680035683.01.T01:CDS 35.0%
AATGACAAAGAATCCATCGT+TGG - Chr6:110689370-110689389 MsG0680035683.01.T01:intron 35.0%
AATGACTCTCTCAGATTTCA+TGG - Chr6:110689502-110689521 MsG0680035683.01.T01:intron 35.0%
AGAGATTCAATGTAGTTGTC+AGG + Chr6:110688354-110688373 None:intergenic 35.0%
ATATCCCAATTGCATGAATG+CGG - Chr6:110687698-110687717 MsG0680035683.01.T01:CDS 35.0%
ATGACTCTCTCAGATTTCAT+GGG - Chr6:110689503-110689522 MsG0680035683.01.T01:intron 35.0%
ATGATCAAACAAGAGTTTCC+AGG - Chr6:110688775-110688794 MsG0680035683.01.T01:intron 35.0%
ATTCTCCACATTCAGACAAT+TGG - Chr6:110687556-110687575 MsG0680035683.01.T01:intron 35.0%
CAGCAAAATCCAATACAACA+AGG - Chr6:110688822-110688841 MsG0680035683.01.T01:intron 35.0%
CTCAAAGAAAGAGTGACAAA+TGG - Chr6:110688187-110688206 MsG0680035683.01.T01:intron 35.0%
CTTGGTTAACATTGTCTTTC+TGG + Chr6:110688278-110688297 None:intergenic 35.0%
CTTTCATGTCTTTGTCAGAA+TGG - Chr6:110688508-110688527 MsG0680035683.01.T01:intron 35.0%
GATCTATAAGTGCATTACTG+TGG - Chr6:110688552-110688571 MsG0680035683.01.T01:CDS 35.0%
GCTCATAGTTTACTGATAAG+TGG - Chr6:110689019-110689038 MsG0680035683.01.T01:intron 35.0%
GGACAAAAGGAGATTTGAAA+AGG - Chr6:110689528-110689547 MsG0680035683.01.T01:intron 35.0%
GGGAGAAAAATTATACCAGT+TGG + Chr6:110686359-110686378 None:intergenic 35.0%
GGTGGAGAAAAGAAATTGAA+TGG - Chr6:110687391-110687410 MsG0680035683.01.T01:CDS 35.0%
GTATGTCTCAAAAAGTGATG+AGG - Chr6:110688143-110688162 MsG0680035683.01.T01:intron 35.0%
GTCAAGAACTTTATGTTCTG+TGG + Chr6:110688620-110688639 None:intergenic 35.0%
GTCACAGAAATATCTAGTGA+CGG + Chr6:110687879-110687898 None:intergenic 35.0%
GTCGTTTGATTAAGATCAGA+TGG + Chr6:110687673-110687692 None:intergenic 35.0%
GTTAAGCTGCATATCCAAAT+AGG + Chr6:110688026-110688045 None:intergenic 35.0%
TACCCTCAAATCTTTATGGT+AGG - Chr6:110686988-110687007 MsG0680035683.01.T01:intron 35.0%
TACTGTGGAATACTTTGATC+CGG - Chr6:110688567-110688586 MsG0680035683.01.T01:CDS 35.0%
TACTTGAGCATTTATTGCCA+TGG + Chr6:110688313-110688332 None:intergenic 35.0%
TAGTTTACTGATAAGTGGAC+CGG - Chr6:110689024-110689043 MsG0680035683.01.T01:intron 35.0%
TATCTCTATACCGTCTCAAA+CGG + Chr6:110688453-110688472 None:intergenic 35.0%
TGGAAAATCTTCATGGAGTT+CGG - Chr6:110688696-110688715 MsG0680035683.01.T01:intron 35.0%
TTATGTAGATCATGACGACT+CGG - Chr6:110687920-110687939 MsG0680035683.01.T01:intron 35.0%
TTCTCCACATTCAGACAATT+GGG - Chr6:110687557-110687576 MsG0680035683.01.T01:intron 35.0%
! AGAGAAAATCACTGCTGTTT+CGG - Chr6:110689116-110689135 MsG0680035683.01.T01:CDS 35.0%
! GATCTTGAAATTTGAAGTCG+TGG + Chr6:110687857-110687876 None:intergenic 35.0%
! TCTTGAATAGCTCTCTAGAA+TGG + Chr6:110689288-110689307 None:intergenic 35.0%
! TTCCATGTAGCATCTGTTTT+TGG - Chr6:110687324-110687343 MsG0680035683.01.T01:CDS 35.0%
!! AGATTTGCTAAGCTTCTTCT+AGG - Chr6:110686878-110686897 MsG0680035683.01.T01:intron 35.0%
!! CATGACATGTGGTTTGTTAT+AGG - Chr6:110687076-110687095 MsG0680035683.01.T01:intron 35.0%
!! TATACCAGCAAGGTTTGTTA+TGG + Chr6:110686960-110686979 None:intergenic 35.0%
!! TGGCTTACACAGTTTTATCA+AGG - Chr6:110689321-110689340 MsG0680035683.01.T01:intron 35.0%
AAAAGTGATGAGGAAGCTGA+AGG - Chr6:110688153-110688172 MsG0680035683.01.T01:intron 40.0%
AAATGGTGTTTCTTCAGCAC+TGG - Chr6:110686922-110686941 MsG0680035683.01.T01:intron 40.0%
AAGAATCCAACGAGAATCTC+CGG + Chr6:110689406-110689425 None:intergenic 40.0%
AATGCCATAACAAACCTTGC+TGG - Chr6:110686953-110686972 MsG0680035683.01.T01:intron 40.0%
ACGATGTATTAGTCCGTGTT+TGG + Chr6:110688986-110689005 None:intergenic 40.0%
ACTGCTTCCAAAATGATCAC+AGG - Chr6:110689250-110689269 MsG0680035683.01.T01:intron 40.0%
ACTGTGGAATACTTTGATCC+GGG - Chr6:110688568-110688587 MsG0680035683.01.T01:CDS 40.0%
ATTCGGCTTCCATACGATTA+GGG - Chr6:110687533-110687552 MsG0680035683.01.T01:intron 40.0%
ATTCTCCGCATTCATGCAAT+TGG + Chr6:110687706-110687725 None:intergenic 40.0%
ATTGTTGAGAGGAATTGTCC+CGG + Chr6:110688589-110688608 None:intergenic 40.0%
CAAGATTGGATCACGAAGTT+TGG + Chr6:110689158-110689177 None:intergenic 40.0%
CCAAAATGATCACAGGATGT+GGG - Chr6:110689257-110689276 MsG0680035683.01.T01:intron 40.0%
CTACATTGAATCTCTCCCTA+AGG - Chr6:110688359-110688378 MsG0680035683.01.T01:intron 40.0%
CTCCAAAAACAGATGCTACA+TGG + Chr6:110687329-110687348 None:intergenic 40.0%
CTGATATCAAGTGAAGACTG+TGG + Chr6:110688805-110688824 None:intergenic 40.0%
GATTTCATGGGATGGACAAA+AGG - Chr6:110689515-110689534 MsG0680035683.01.T01:intron 40.0%
GTCTTCCTTTCTTGAGACAT+TGG + Chr6:110687369-110687388 None:intergenic 40.0%
GTTGGAGGAACTTTAACAAC+TGG + Chr6:110688219-110688238 None:intergenic 40.0%
GTTGTTAAAGTTCCTCCAAC+AGG - Chr6:110688219-110688238 MsG0680035683.01.T01:intron 40.0%
TCACAACAGTTAGCTAAGGA+TGG - Chr6:110687453-110687472 MsG0680035683.01.T01:CDS 40.0%
TCCAAAATGATCACAGGATG+TGG - Chr6:110689256-110689275 MsG0680035683.01.T01:intron 40.0%
TCCATCACAACAGTTAGCTA+AGG - Chr6:110687449-110687468 MsG0680035683.01.T01:CDS 40.0%
TCCTTAGCTAACTGTTGTGA+TGG + Chr6:110687453-110687472 None:intergenic 40.0%
TGTCAGATGTAGCTGTGAAA+TGG - Chr6:110688244-110688263 MsG0680035683.01.T01:intron 40.0%
TGTCTCAAGAAAGGAAGACT+AGG - Chr6:110687370-110687389 MsG0680035683.01.T01:CDS 40.0%
TTCTCCGCATTCATGCAATT+GGG + Chr6:110687705-110687724 None:intergenic 40.0%
TTTATCCCATCCTCAGAGTT+TGG + Chr6:110689452-110689471 None:intergenic 40.0%
! ACTCTGAGGATGGGATAAAA+AGG - Chr6:110689453-110689472 MsG0680035683.01.T01:intron 40.0%
!! ATTATACCAGTTGGTGGCTT+AGG + Chr6:110686350-110686369 None:intergenic 40.0%
!!! TTAGTCCGTGTTTGGTTTTG+TGG + Chr6:110688978-110688997 None:intergenic 40.0%
AAGCTGAGTGTTTACCTCCA+TGG + Chr6:110687484-110687503 None:intergenic 45.0%
ACATCTGACAATCCTGTTGG+AGG + Chr6:110688234-110688253 None:intergenic 45.0%
AGCTAAGGATGGATCAACCA+TGG - Chr6:110687464-110687483 MsG0680035683.01.T01:CDS 45.0%
ATGGAGTTCGGCAATAAGCA+TGG - Chr6:110688708-110688727 MsG0680035683.01.T01:intron 45.0%
ATTCGGATTCCATGCAGTCA+AGG + Chr6:110687729-110687748 None:intergenic 45.0%
CAGAATGGTAGAGAAAGCCT+TGG - Chr6:110688523-110688542 MsG0680035683.01.T01:intron 45.0%
CCAAGTACTTAAAGCAGCCA+TGG - Chr6:110688293-110688312 MsG0680035683.01.T01:intron 45.0%
CGATCTGCTCATGAACATTC+CGG - Chr6:110687951-110687970 MsG0680035683.01.T01:intron 45.0%
CTCAAGAAAGGAAGACTAGG+TGG - Chr6:110687373-110687392 MsG0680035683.01.T01:CDS 45.0%
CTCTCTCAGATTTCATGGGA+TGG - Chr6:110689507-110689526 MsG0680035683.01.T01:intron 45.0%
CTGTCCCAATTGTCTGAATG+TGG + Chr6:110687564-110687583 None:intergenic 45.0%
GACAAAGAATCCATCGTTGG+CGG - Chr6:110689373-110689392 MsG0680035683.01.T01:intron 45.0%
GATTCGGCTTCCATACGATT+AGG - Chr6:110687532-110687551 MsG0680035683.01.T01:intron 45.0%
GCAAACATCTCCAAACTCTG+AGG - Chr6:110689439-110689458 MsG0680035683.01.T01:intron 45.0%
GCTACATCTGACAATCCTGT+TGG + Chr6:110688237-110688256 None:intergenic 45.0%
GGCAATAAGCATGGAGAAGA+GGG - Chr6:110688717-110688736 MsG0680035683.01.T01:intron 45.0%
GGGACAATTCCTCTCAACAA+TGG - Chr6:110688588-110688607 MsG0680035683.01.T01:CDS 45.0%
GTGGAGAATCCCTAATCGTA+TGG + Chr6:110687545-110687564 None:intergenic 45.0%
GTGTCACATGACATGACATG+TGG - Chr6:110687065-110687084 MsG0680035683.01.T01:intron 45.0%
GTTGTCAGGTATCTCCATCT+CGG + Chr6:110688340-110688359 None:intergenic 45.0%
TAAGGATGGATCAACCATGG+AGG - Chr6:110687467-110687486 MsG0680035683.01.T01:CDS 45.0%
TCTGAGAGAGTCATTGATGG+TGG + Chr6:110689497-110689516 None:intergenic 45.0%
TGCCACCACAAAACCAAACA+CGG - Chr6:110688970-110688989 MsG0680035683.01.T01:intron 45.0%
TGCTCAAGTACTATCCGAGA+TGG - Chr6:110688323-110688342 MsG0680035683.01.T01:intron 45.0%
TGGAGCCAATGTCTCAAGAA+AGG - Chr6:110687361-110687380 MsG0680035683.01.T01:CDS 45.0%
TGGTCATGTCCATTGTTGAG+AGG + Chr6:110688600-110688619 None:intergenic 45.0%
TGTGGCCTTTCGATCATGAT+CGG - Chr6:110687584-110687603 MsG0680035683.01.T01:intron 45.0%
TTCAGACAATTGGGACAGTG+TGG - Chr6:110687566-110687585 MsG0680035683.01.T01:intron 45.0%
! ACATCTCCAAACTCTGAGGA+TGG - Chr6:110689443-110689462 MsG0680035683.01.T01:intron 45.0%
! CATCTCCAAACTCTGAGGAT+GGG - Chr6:110689444-110689463 MsG0680035683.01.T01:intron 45.0%
! CCATGGCTGCTTTAAGTACT+TGG + Chr6:110688296-110688315 None:intergenic 45.0%
! CCCACATCCTGTGATCATTT+TGG + Chr6:110689260-110689279 None:intergenic 45.0%
! CTTCTAGGAGAAGACATGTC+AGG - Chr6:110686893-110686912 MsG0680035683.01.T01:intron 45.0%
!! ACTTATAGATCGACTCGCCA+AGG + Chr6:110688543-110688562 None:intergenic 45.0%
!!! TGAATTTTTTTTTTAATTAA+TGG - Chr6:110686824-110686843 MsG0680035683.01.T01:intron 5.0%
AAAGGGTAGTCGAGAGTGAC+CGG + Chr6:110689046-110689065 None:intergenic 50.0%
ACCGTCCGATCATGATCGAA+AGG + Chr6:110687592-110687611 None:intergenic 50.0%
ACTTGCGAGACCGTTTGAGA+CGG - Chr6:110688440-110688459 MsG0680035683.01.T01:intron 50.0%
AGTGAAGACTGTGGAAGTCC+TGG + Chr6:110688796-110688815 None:intergenic 50.0%
CGGCAATAAGCATGGAGAAG+AGG - Chr6:110688716-110688735 MsG0680035683.01.T01:intron 50.0%
CTCGTTGGATTCTTTGCCAG+TGG - Chr6:110689412-110689431 MsG0680035683.01.T01:intron 50.0%
GACATGTCAGGTGCAGGAAA+TGG - Chr6:110686905-110686924 MsG0680035683.01.T01:intron 50.0%
GCCTTTCGATCATGATCGGA+CGG - Chr6:110687588-110687607 MsG0680035683.01.T01:intron 50.0%
GTTGGATTCTTTGCCAGTGG+CGG - Chr6:110689415-110689434 MsG0680035683.01.T01:intron 50.0%
!! ATACCAGTTGGTGGCTTAGG+AGG + Chr6:110686347-110686366 None:intergenic 50.0%
!! ATCACTGCTGTTTCGGAGAC+TGG - Chr6:110689123-110689142 MsG0680035683.01.T01:CDS 50.0%
!!! GTCCGTGTTTGGTTTTGTGG+TGG + Chr6:110688975-110688994 None:intergenic 50.0%
ATCCAACGAGAATCTCCGGC+TGG + Chr6:110689402-110689421 None:intergenic 55.0%
ATCCAGCCGGAGATTCTCGT+TGG - Chr6:110689397-110689416 MsG0680035683.01.T01:intron 55.0%
ATGCCTCCTAAGCCACCAAC+TGG - Chr6:110686341-110686360 MsG0680035683.01.T01:CDS 55.0%
CATCGCATCAAGCTTGCGCA+AGG + Chr6:110687977-110687996 None:intergenic 55.0%
GCGGAGAATCCTTGACTGCA+TGG - Chr6:110687717-110687736 MsG0680035683.01.T01:CDS 55.0%
GGAGAAGACATGTCAGGTGC+AGG - Chr6:110686899-110686918 MsG0680035683.01.T01:intron 55.0%
GCATCAAGCTTGCGCAAGGC+CGG + Chr6:110687973-110687992 None:intergenic 60.0%
GGAGATGTTTGCTCCGCCAC+TGG + Chr6:110689431-110689450 None:intergenic 60.0%
CATCGTTGGCGGCATCCAGC+CGG - Chr6:110689384-110689403 MsG0680035683.01.T01:intron 65.0%
CGGCTGGATGCCGCCAACGA+TGG + Chr6:110689386-110689405 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 110686341 110689691 110686341 ID=MsG0680035683.01;Name=MsG0680035683.01
Chr6 mRNA 110686341 110689691 110686341 ID=MsG0680035683.01.T01;Parent=MsG0680035683.01;Name=MsG0680035683.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|0.85|7|0|460
Chr6 exon 110689670 110689691 110689670 ID=MsG0680035683.01.T01:exon:8967;Parent=MsG0680035683.01.T01
Chr6 exon 110689058 110689174 110689058 ID=MsG0680035683.01.T01:exon:8966;Parent=MsG0680035683.01.T01
Chr6 exon 110688544 110688698 110688544 ID=MsG0680035683.01.T01:exon:8965;Parent=MsG0680035683.01.T01
Chr6 exon 110688030 110688104 110688030 ID=MsG0680035683.01.T01:exon:8964;Parent=MsG0680035683.01.T01
Chr6 exon 110687652 110687927 110687652 ID=MsG0680035683.01.T01:exon:8963;Parent=MsG0680035683.01.T01
Chr6 exon 110687189 110687506 110687189 ID=MsG0680035683.01.T01:exon:8962;Parent=MsG0680035683.01.T01
Chr6 exon 110686341 110686760 110686341 ID=MsG0680035683.01.T01:exon:8961;Parent=MsG0680035683.01.T01
Chr6 CDS 110689670 110689691 110689670 ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Chr6 CDS 110689058 110689174 110689058 ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Chr6 CDS 110688544 110688698 110688544 ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Chr6 CDS 110688030 110688104 110688030 ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Chr6 CDS 110687652 110687927 110687652 ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Chr6 CDS 110687189 110687506 110687189 ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Chr6 CDS 110686341 110686760 110686341 ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Gene Sequence

>MsG0680035683.01.T01

ATGCCTCCTAAGCCACCAACTGAAACTGATTTGATGAAGGAAAGATTTGCTAAGCTTCTTCTAGGAGAAGACATGTCAGGTGCAGGAAATGGTGTTTCTTCAGCACTGGCTTTGTCAAATGCCATAACAAACCTTGCTGCATCTGTTTTTGGAGAACAATCAAAGTTGGAGCCAATGTCTCAAGAAAGGAAGACTAGGTGGAGAAAAGAAATTGAATGGCTTCTTTCTGTGACTGATCATATTGTTGAATTTGCTCCATCACAACAGTTAGCTAAGGATGGATCAACCATGGAGATCATGACGACTCGGCAAAGAAGCGATCTGCTCATGAACATTCCGGCCTTGCGCAAGCTTGATGCGATGCTCCTTGACATTTTGGACAACTTTAGAGATCAAAATGAATTTTGGTATGTCTCAAAAAGTGATGAGGAAGCTGAAGGTAACACTGTCACTCAAAGAAAGAGTGACAAATGGTGGCTACCAGTTGTTAAAGTTCCTCCAACAGGATTGTCAGATGTAGCTGTGAAATGGATACAGTTCCAGAAAGACAATGTTAACCAAGTACTTAAAGCAGCCATGGCAATAAATGCTCAAGTACTATCCGAGATGGAGATACCTGACAACTACATTGAATCTCTCCCTAAGAATGGTAGAGAAAGCCTTGGCGAGTCGATCTATAAGTGCATTACTGTGGAATACTTTGATCCGGGACAATTCCTCTCAACAATGGACATGACCACAGAACATAAAGTTCTTGACCTCAAGAATAGGATTGAAGCTTCTATTGTAATATGGAAAAGGAAGATGAATAAAGATGGAAAATCTTCATGGAGTTCGGCAATAAGCATGGAGAAGAGGGAACTCTTTGAAGAGAGAGCAGAAACAATACTGTTGATGATCAAACAAGAGTTTCCAGGACTTCCACAGTCTTCACTTGATATCAGCAAAATCCAATACAACAAGGATGTGGGACAAGCCATTCTAGAGAGCTATTCAAGAGTAATAGAAAGCTTGGCTTACACAGTTTTATCAAGGATTGATGATGTTTTATATGTGGATTCAATGACAAAGAATCCATCGTTGGCGGCATCCAGCCGGAGATTCTCGTTGGATTCTTTGCCAGTGGCGGAGCAAACATCTCCAAACTCTGAGGATGGGATAAAAAGGATGAGTTCTTCAGACACACCACCATCAATGACTCTCTCAGATTTCATGGGATGGACAAAAGGAGATTTGAAAAGGACTAATTCTACAGGTGACTTAGAAGACTTGAAAGACAAAGATGAAAAAGTTTTGAATAAGCTTGGAACACCAAAGAAAAATTATTACTTGGACAAGCTTGAGTATTTGAATTCTATAAGAAGTCCTATCGCGCGACATTAA
Protein sequence

>MsG0680035683.01.T01

MPPKPPTETDLMKERFAKLLLGEDMSGAGNGVSSALALSNAITNLAASVFGEQSKLEPMSQERKTRWRKEIEWLLSVTDHIVEFAPSQQLAKDGSTMEIMTTRQRSDLLMNIPALRKLDAMLLDILDNFRDQNEFWYVSKSDEEAEGNTVTQRKSDKWWLPVVKVPPTGLSDVAVKWIQFQKDNVNQVLKAAMAINAQVLSEMEIPDNYIESLPKNGRESLGESIYKCITVEYFDPGQFLSTMDMTTEHKVLDLKNRIEASIVIWKRKMNKDGKSSWSSAISMEKRELFEERAETILLMIKQEFPGLPQSSLDISKIQYNKDVGQAILESYSRVIESLAYTVLSRIDDVLYVDSMTKNPSLAASSRRFSLDSLPVAEQTSPNSEDGIKRMSSSDTPPSMTLSDFMGWTKGDLKRTNSTGDLEDLKDKDEKVLNKLGTPKKNYYLDKLEYLNSIRSPIARH*