AlfalfaGEDB | MsG0680035683.01

M. sativa cultivar ZhongmuNo.1 / MsG0680035683.01

KEGG: -
GO: GO:0005089
PFAM: PF03759

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035683.01.T01	XP_003620607.2	97.403	462	10	2	1	460	88	549	0	917

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035683.01.T01	Q9SVQ3	63.341	461	152	6	4	460	70	517	0	578

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035683.01.T01	F6LPV1	97.403	462	10	2	1	460	88	549	0.0	917

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048357.01	MsG0680035683.01	0.849127	3.948206e-60	7.410850e-57
MsG0180000632.01	MsG0680035683.01	0.855658	5.443870e-62	1.266094e-58
MsG0180000994.01	MsG0680035683.01	0.843627	1.247331e-58	1.963426e-55
MsG0180001200.01	MsG0680035683.01	0.845814	3.210379e-59	5.416166e-56
MsG0180001771.01	MsG0680035683.01	0.813950	1.974543e-51	1.307447e-48
MsG0180003431.01	MsG0680035683.01	0.801423	9.067545e-49	4.328678e-46
MsG0180005540.01	MsG0680035683.01	0.816312	5.900155e-52	4.166697e-49
MsG0280006967.01	MsG0680035683.01	0.817902	2.590995e-52	1.911025e-49
MsG0280007305.01	MsG0680035683.01	0.802115	6.538578e-49	3.176588e-46
MsG0280008395.01	MsG0680035683.01	0.802368	5.799746e-49	2.836072e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035683.01.T01	MTR_6g087700	97.403	462	10	2	1	460	88	549	0.0	917
MsG0680035683.01.T01	MTR_2g101830	64.642	461	142	7	8	460	86	533	0.0	576
MsG0680035683.01.T01	MTR_4g013165	62.195	410	137	9	59	460	1	400	1.10e-170	485
MsG0680035683.01.T01	MTR_7g065220	55.108	372	146	4	7	358	183	553	2.28e-143	425
MsG0680035683.01.T01	MTR_4g019770	54.447	371	153	4	3	358	91	460	1.06e-136	404
MsG0680035683.01.T01	MTR_4g075640	52.533	375	160	5	7	364	86	459	1.64e-132	394
MsG0680035683.01.T01	MTR_3g069590	50.653	383	163	5	7	370	99	474	3.88e-131	392
MsG0680035683.01.T01	MTR_5g081410	51.316	380	159	5	10	370	84	456	6.13e-131	390
MsG0680035683.01.T01	MTR_8g030850	47.074	376	174	5	7	358	96	470	8.58e-120	358
MsG0680035683.01.T01	MTR_7g077690	43.780	418	167	7	8	358	113	529	3.16e-110	336

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680035683.01.T01	AT4G13240	63.341	461	152	6	4	460	70	517	0.0	578
MsG0680035683.01.T01	AT3G24620	65.487	452	140	6	10	460	87	523	0.0	577
MsG0680035683.01.T01	AT1G79860	62.719	456	127	11	12	460	96	515	0.0	541
MsG0680035683.01.T01	AT1G52240	62.031	453	150	7	12	460	108	542	0.0	540
MsG0680035683.01.T01	AT5G19560	57.451	463	176	7	7	460	43	493	1.35e-176	504
MsG0680035683.01.T01	AT5G19560	57.451	463	176	7	7	460	43	493	1.35e-176	504
MsG0680035683.01.T01	AT5G19560	57.451	463	176	7	7	460	62	512	2.47e-176	504
MsG0680035683.01.T01	AT3G16130	54.957	464	179	10	7	458	89	534	2.34e-165	477
MsG0680035683.01.T01	AT5G19560	66.038	318	104	2	7	321	62	378	1.53e-149	431
MsG0680035683.01.T01	AT5G02010	49.038	416	187	7	7	398	69	483	8.02e-139	410

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Find 95 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAGATGAATAAAGA+TGG	0.515789	6:-110687334	MsG0680035683.01.T01:CDS
AAAAGTGATGAGGAAGCTGA+AGG	0.607695	6:-110687857	MsG0680035683.01.T01:CDS
AAAGAAAGAGTGACAAATGG+TGG	0.613743	6:-110687820	MsG0680035683.01.T01:CDS
AAATCTGAGAGAGTCATTGA+TGG	0.588625	6:+110686513	None:intergenic
AAATGGTGTTTCTTCAGCAC+TGG	0.456274	6:-110689088	MsG0680035683.01.T01:CDS
AAGAATCCAACGAGAATCTC+CGG	0.517591	6:+110686607	None:intergenic
AAGCTGAGTGTTTACCTCCA+TGG	0.443142	6:+110688529	None:intergenic
AAGCTTCAATCCTATTCTTG+AGG	0.579814	6:+110687371	None:intergenic
AAGTTCTTGACCTCAAGAAT+AGG	0.466447	6:-110687381	MsG0680035683.01.T01:CDS
AATGACAAAGAATCCATCGT+TGG	0.619614	6:-110686640	MsG0680035683.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTCATGAACTAAGATCA+TGG	-	Chr6:110686430-110686449	MsG0680035683.01.T01:CDS	30.0%
AACTTTAATCGTAACTTCGT+AGG	-	Chr6:110687162-110687181	MsG0680035683.01.T01:intron	30.0%
AAGATTTGTAGAGAACAACA+TGG	-	Chr6:110687761-110687780	MsG0680035683.01.T01:CDS	30.0%
AAGTCATGAACTAAGATCAT+GGG	-	Chr6:110686431-110686450	MsG0680035683.01.T01:CDS	30.0%
AGAAAAATTATACCAGTTGG+TGG	+	Chr6:110686356-110686375	None:intergenic	30.0%
ATACATCGTTTAGTTGAGTA+TGG	-	Chr6:110688997-110689016	MsG0680035683.01.T01:intron	30.0%
CTTTATGGTAGGAAATGAAA+TGG	-	Chr6:110686999-110687018	MsG0680035683.01.T01:intron	30.0%
TTAAGCTGCATATCCAAATA+GGG	+	Chr6:110688025-110688044	None:intergenic	30.0%
TTCAAGAGTAATAGAAAGCT+TGG	-	Chr6:110689301-110689320	MsG0680035683.01.T01:intron	30.0%
TTCCTACCATAAAGATTTGA+GGG	+	Chr6:110686993-110687012	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	110686341	110689691	110686341	ID=MsG0680035683.01;Name=MsG0680035683.01
Chr6	mRNA	110686341	110689691	110686341	ID=MsG0680035683.01.T01;Parent=MsG0680035683.01;Name=MsG0680035683.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|1\|0.85\|7\|0\|460
Chr6	exon	110689670	110689691	110689670	ID=MsG0680035683.01.T01:exon:8967;Parent=MsG0680035683.01.T01
Chr6	exon	110689058	110689174	110689058	ID=MsG0680035683.01.T01:exon:8966;Parent=MsG0680035683.01.T01
Chr6	exon	110688544	110688698	110688544	ID=MsG0680035683.01.T01:exon:8965;Parent=MsG0680035683.01.T01
Chr6	exon	110688030	110688104	110688030	ID=MsG0680035683.01.T01:exon:8964;Parent=MsG0680035683.01.T01
Chr6	exon	110687652	110687927	110687652	ID=MsG0680035683.01.T01:exon:8963;Parent=MsG0680035683.01.T01
Chr6	exon	110687189	110687506	110687189	ID=MsG0680035683.01.T01:exon:8962;Parent=MsG0680035683.01.T01
Chr6	exon	110686341	110686760	110686341	ID=MsG0680035683.01.T01:exon:8961;Parent=MsG0680035683.01.T01
Chr6	CDS	110689670	110689691	110689670	ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Chr6	CDS	110689058	110689174	110689058	ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Chr6	CDS	110688544	110688698	110688544	ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Chr6	CDS	110688030	110688104	110688030	ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Chr6	CDS	110687652	110687927	110687652	ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Chr6	CDS	110687189	110687506	110687189	ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01
Chr6	CDS	110686341	110686760	110686341	ID=MsG0680035683.01.T01:cds;Parent=MsG0680035683.01.T01

Gene Sequence

>MsG0680035683.01.T01

ATGCCTCCTAAGCCACCAACTGAAACTGATTTGATGAAGGAAAGATTTGCTAAGCTTCTTCTAGGAGAAGACATGTCAGGTGCAGGAAATGGTGTTTCTTCAGCACTGGCTTTGTCAAATGCCATAACAAACCTTGCTGCATCTGTTTTTGGAGAACAATCAAAGTTGGAGCCAATGTCTCAAGAAAGGAAGACTAGGTGGAGAAAAGAAATTGAATGGCTTCTTTCTGTGACTGATCATATTGTTGAATTTGCTCCATCACAACAGTTAGCTAAGGATGGATCAACCATGGAGATCATGACGACTCGGCAAAGAAGCGATCTGCTCATGAACATTCCGGCCTTGCGCAAGCTTGATGCGATGCTCCTTGACATTTTGGACAACTTTAGAGATCAAAATGAATTTTGGTATGTCTCAAAAAGTGATGAGGAAGCTGAAGGTAACACTGTCACTCAAAGAAAGAGTGACAAATGGTGGCTACCAGTTGTTAAAGTTCCTCCAACAGGATTGTCAGATGTAGCTGTGAAATGGATACAGTTCCAGAAAGACAATGTTAACCAAGTACTTAAAGCAGCCATGGCAATAAATGCTCAAGTACTATCCGAGATGGAGATACCTGACAACTACATTGAATCTCTCCCTAAGAATGGTAGAGAAAGCCTTGGCGAGTCGATCTATAAGTGCATTACTGTGGAATACTTTGATCCGGGACAATTCCTCTCAACAATGGACATGACCACAGAACATAAAGTTCTTGACCTCAAGAATAGGATTGAAGCTTCTATTGTAATATGGAAAAGGAAGATGAATAAAGATGGAAAATCTTCATGGAGTTCGGCAATAAGCATGGAGAAGAGGGAACTCTTTGAAGAGAGAGCAGAAACAATACTGTTGATGATCAAACAAGAGTTTCCAGGACTTCCACAGTCTTCACTTGATATCAGCAAAATCCAATACAACAAGGATGTGGGACAAGCCATTCTAGAGAGCTATTCAAGAGTAATAGAAAGCTTGGCTTACACAGTTTTATCAAGGATTGATGATGTTTTATATGTGGATTCAATGACAAAGAATCCATCGTTGGCGGCATCCAGCCGGAGATTCTCGTTGGATTCTTTGCCAGTGGCGGAGCAAACATCTCCAAACTCTGAGGATGGGATAAAAAGGATGAGTTCTTCAGACACACCACCATCAATGACTCTCTCAGATTTCATGGGATGGACAAAAGGAGATTTGAAAAGGACTAATTCTACAGGTGACTTAGAAGACTTGAAAGACAAAGATGAAAAAGTTTTGAATAAGCTTGGAACACCAAAGAAAAATTATTACTTGGACAAGCTTGAGTATTTGAATTCTATAAGAAGTCCTATCGCGCGACATTAA

Protein sequence

>MsG0680035683.01.T01

MPPKPPTETDLMKERFAKLLLGEDMSGAGNGVSSALALSNAITNLAASVFGEQSKLEPMSQERKTRWRKEIEWLLSVTDHIVEFAPSQQLAKDGSTMEIMTTRQRSDLLMNIPALRKLDAMLLDILDNFRDQNEFWYVSKSDEEAEGNTVTQRKSDKWWLPVVKVPPTGLSDVAVKWIQFQKDNVNQVLKAAMAINAQVLSEMEIPDNYIESLPKNGRESLGESIYKCITVEYFDPGQFLSTMDMTTEHKVLDLKNRIEASIVIWKRKMNKDGKSSWSSAISMEKRELFEERAETILLMIKQEFPGLPQSSLDISKIQYNKDVGQAILESYSRVIESLAYTVLSRIDDVLYVDSMTKNPSLAASSRRFSLDSLPVAEQTSPNSEDGIKRMSSSDTPPSMTLSDFMGWTKGDLKRTNSTGDLEDLKDKDEKVLNKLGTPKKNYYLDKLEYLNSIRSPIARH*