Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004451.01.T01 | XP_003590964.1 | 94.928 | 138 | 6 | 1 | 1 | 137 | 1 | 138 | 7.23E-84 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004451.01.T01 | G7I6S0 | 94.928 | 138 | 6 | 1 | 1 | 137 | 1 | 138 | 3.45e-84 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049013.01 | MsG0180004451.01 | 0.804274 | 2.336872e-49 | 1.199815e-46 |
| MsG0180004148.01 | MsG0180004451.01 | -0.820031 | 8.501309e-53 | 6.651679e-50 |
| MsG0180004259.01 | MsG0180004451.01 | -0.822453 | 2.349750e-53 | 1.967657e-50 |
| MsG0180004451.01 | MsG0180005544.01 | 0.808027 | 3.788596e-50 | 2.142886e-47 |
| MsG0180004451.01 | MsG0280006422.01 | -0.806224 | 9.127152e-50 | 4.927182e-47 |
| MsG0180004451.01 | MsG0280007723.01 | 0.844713 | 6.376273e-59 | 1.038324e-55 |
| MsG0180004451.01 | MsG0280009109.01 | -0.801457 | 8.924916e-49 | 4.264162e-46 |
| MsG0180004451.01 | MsG0280011059.01 | 0.809986 | 1.442820e-50 | 8.595096e-48 |
| MsG0180004451.01 | MsG0280011388.01 | -0.815110 | 1.093164e-51 | 7.469063e-49 |
| MsG0180004451.01 | MsG0380012471.01 | -0.813021 | 3.159554e-51 | 2.040086e-48 |
| MsG0180004451.01 | MsG0380012661.01 | 0.802875 | 4.558751e-49 | 2.258089e-46 |
| MsG0180004451.01 | MsG0380014647.01 | -0.807778 | 4.281515e-50 | 2.405876e-47 |
| MsG0180004451.01 | MsG0380015027.01 | -0.812555 | 3.997040e-51 | 2.549268e-48 |
| MsG0180004451.01 | MsG0380017776.01 | 0.834229 | 3.381856e-56 | 3.987953e-53 |
| MsG0180004451.01 | MsG0480018477.01 | -0.802319 | 5.934663e-49 | 2.898515e-46 |
| MsG0180004451.01 | MsG0480018894.01 | -0.813597 | 2.362058e-51 | 1.549218e-48 |
| MsG0180004451.01 | MsG0480021448.01 | -0.847534 | 1.088304e-59 | 1.940568e-56 |
| MsG0180004451.01 | MsG0480021451.01 | -0.815400 | 9.425445e-52 | 6.491666e-49 |
| MsG0180004451.01 | MsG0480021453.01 | -0.851264 | 9.936188e-61 | 1.999903e-57 |
| MsG0180004451.01 | MsG0480022052.01 | 0.846691 | 1.852196e-59 | 3.214466e-56 |
| MsG0180004451.01 | MsG0480022223.01 | -0.800566 | 1.357033e-48 | 6.339207e-46 |
| MsG0180004451.01 | MsG0480022795.01 | -0.815234 | 1.026288e-51 | 7.035855e-49 |
| MsG0180004451.01 | MsG0580024051.01 | -0.814183 | 1.754236e-51 | 1.168975e-48 |
| MsG0180004451.01 | MsG0580026718.01 | -0.808338 | 3.253572e-50 | 1.855482e-47 |
| MsG0180004451.01 | MsG0780036184.01 | 0.837101 | 6.341253e-57 | 8.152063e-54 |
| MsG0180004451.01 | MsG0780036396.01 | 0.821039 | 4.990923e-53 | 4.015969e-50 |
| MsG0180004451.01 | MsG0780039137.01 | -0.803853 | 2.859191e-49 | 1.452253e-46 |
| MsG0180004451.01 | MsG0780040127.01 | 0.821054 | 4.951084e-53 | 3.985529e-50 |
| MsG0180004451.01 | MsG0780040858.01 | -0.812614 | 3.879659e-51 | 2.478259e-48 |
| MsG0180004451.01 | MsG0880042779.01 | -0.818706 | 1.703956e-52 | 1.284904e-49 |
| MsG0180004451.01 | MsG0880045555.01 | 0.860939 | 1.455450e-63 | 4.047331e-60 |
| MsG0180004451.01 | MsG0880045965.01 | -0.834106 | 3.631533e-56 | 4.266820e-53 |
| MsG0180004451.01 | MsG0880046126.01 | -0.811521 | 6.717432e-51 | 4.167301e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004451.01.T01 | MTR_1g080150 | 94.928 | 138 | 6 | 1 | 1 | 137 | 1 | 138 | 8.76e-88 | 256 |
| MsG0180004451.01.T01 | MTR_1g080150 | 94.928 | 138 | 6 | 1 | 1 | 137 | 1 | 138 | 1.26e-87 | 253 |
| MsG0180004451.01.T01 | MTR_1g080150 | 94.928 | 138 | 6 | 1 | 1 | 137 | 1 | 138 | 2.01e-87 | 252 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004451.01.T01 | AT3G04500 | 68.421 | 95 | 25 | 4 | 45 | 137 | 52 | 143 | 6.93e-35 | 119 |
| MsG0180004451.01.T01 | AT3G04500 | 72.941 | 85 | 19 | 3 | 55 | 137 | 61 | 143 | 1.92e-34 | 118 |
| MsG0180004451.01.T01 | AT3G04500 | 68.421 | 95 | 25 | 4 | 45 | 137 | 52 | 143 | 2.11e-34 | 120 |
Find 63 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAGGAACAGCTTTCTTCT+TGG | 0.222688 | 1:+78160515 | None:intergenic |
| TCTAAAATCGCGTTTGGTTT+AGG | 0.252268 | 1:+78161008 | None:intergenic |
| TAAGCAGCAGGCGGTGGAAC+GGG | 0.268956 | 1:+78160754 | None:intergenic |
| GGCATTGGAATATGTGAATT+GGG | 0.328527 | 1:+78160888 | None:intergenic |
| CAATGTTTGATTGATCGAAT+TGG | 0.343692 | 1:+78160979 | None:intergenic |
| CGGAGGAAGCTGCACGGCGG+GGG | 0.354638 | 1:+78160792 | None:intergenic |
| CTTCCTCCGCCGCCAATTGT+CGG | 0.356289 | 1:-78160778 | MsG0180004451.01.T01:CDS |
| TGTGAGAGGTAGTGTGTGTT+TGG | 0.374014 | 1:-78160348 | MsG0180004451.01.T01:intron |
| AATGTTTGATTGATCGAATT+GGG | 0.378975 | 1:+78160980 | None:intergenic |
| TGTTGAAGGTGAAAGGGAAC+GGG | 0.379503 | 1:+78160856 | None:intergenic |
| GGCGGAGGAAGCTGCACGGC+GGG | 0.390499 | 1:+78160790 | None:intergenic |
| GGGCATTGGAATATGTGAAT+TGG | 0.406105 | 1:+78160887 | None:intergenic |
| GGTGGAACGGGGCCGACAAT+TGG | 0.409141 | 1:+78160766 | None:intergenic |
| GGAAAATCTAAAATCGCGTT+TGG | 0.410614 | 1:+78161002 | None:intergenic |
| TGAAAGGGAACGGGGAAGTA+AGG | 0.412150 | 1:+78160865 | None:intergenic |
| GGGCCGACAATTGGCGGCGG+AGG | 0.430346 | 1:+78160775 | None:intergenic |
| GCGGAGGAAGCTGCACGGCG+GGG | 0.443060 | 1:+78160791 | None:intergenic |
| GCGTAGTGAGAGGTGGTTGC+GGG | 0.445928 | 1:+78160832 | None:intergenic |
| CGGCGGAGGAAGCTGCACGG+CGG | 0.453429 | 1:+78160789 | None:intergenic |
| GGAACGGGGCCGACAATTGG+CGG | 0.457314 | 1:+78160769 | None:intergenic |
| GAAAGCTGCTGGTCAAGCTT+GGG | 0.460458 | 1:-78160493 | MsG0180004451.01.T01:CDS |
| AACGGGGAAGTAAGGGGCAT+TGG | 0.463371 | 1:+78160873 | None:intergenic |
| GGAAAGCTGCTGGTCAAGCT+TGG | 0.464391 | 1:-78160494 | MsG0180004451.01.T01:CDS |
| TCAGGCCACTCTGCAAGAAT+AGG | 0.467965 | 1:+78160465 | None:intergenic |
| TGCGGGTTGTTGAAGGTGAA+AGG | 0.471510 | 1:+78160849 | None:intergenic |
| GGTGGTGTCGTCATTGCAAT+TGG | 0.472771 | 1:+78160931 | None:intergenic |
| AGGTGGTTGCGGGTTGTTGA+AGG | 0.484864 | 1:+78160842 | None:intergenic |
| GCTGTTCCTCGGAAAGCTGC+TGG | 0.484908 | 1:-78160504 | MsG0180004451.01.T01:CDS |
| ACGGAGTAAGCAGCAGGCGG+TGG | 0.487179 | 1:+78160748 | None:intergenic |
| AAAGGGAACGGGGAAGTAAG+GGG | 0.493709 | 1:+78160867 | None:intergenic |
| GTAAGCAGCAGGCGGTGGAA+CGG | 0.496822 | 1:+78160753 | None:intergenic |
| GTTTGGTTTAGGTTTGTTTG+AGG | 0.500810 | 1:+78161019 | None:intergenic |
| TTGTTGAAGGTGAAAGGGAA+CGG | 0.508796 | 1:+78160855 | None:intergenic |
| GAAAGGGAACGGGGAAGTAA+GGG | 0.516807 | 1:+78160866 | None:intergenic |
| TGCGGAACGGAGTAAGCAGC+AGG | 0.541336 | 1:+78160742 | None:intergenic |
| GCGGGTTGTTGAAGGTGAAA+GGG | 0.543608 | 1:+78160850 | None:intergenic |
| AGCTGCTGGTCAAGCTTGGG+AGG | 0.546251 | 1:-78160490 | MsG0180004451.01.T01:CDS |
| TTCACATTCTCAAGAGCCTC+CGG | 0.552039 | 1:+78160579 | None:intergenic |
| CTCAACATCGCTACTCGCAA+TGG | 0.565157 | 1:+78160551 | None:intergenic |
| AAGCAGCAGGCGGTGGAACG+GGG | 0.570100 | 1:+78160755 | None:intergenic |
| CCAAGAAGAAAGCTGTTCCT+CGG | 0.572765 | 1:-78160515 | MsG0180004451.01.T01:CDS |
| GGCGTAGTGAGAGGTGGTTG+CGG | 0.577840 | 1:+78160831 | None:intergenic |
| GTTGAAGGTGAAAGGGAACG+GGG | 0.590747 | 1:+78160857 | None:intergenic |
| ATTCTTGCAGAGTGGCCTGA+AGG | 0.594669 | 1:-78160462 | MsG0180004451.01.T01:intron |
| AAAATACTAACTTGATATTG+CGG | 0.595828 | 1:+78160724 | None:intergenic |
| GCTTGACCAGCAGCTTTCCG+AGG | 0.598696 | 1:+78160498 | None:intergenic |
| GTAGGGTGCGGCGTAGTGAG+AGG | 0.607879 | 1:+78160822 | None:intergenic |
| GGGTGCGGCGTAGTGAGAGG+TGG | 0.612059 | 1:+78160825 | None:intergenic |
| GGCTCTTGAGAATGTGAAGG+CGG | 0.612668 | 1:-78160574 | MsG0180004451.01.T01:CDS |
| ACGGGGCCGACAATTGGCGG+CGG | 0.614773 | 1:+78160772 | None:intergenic |
| GGTTGAGATGATGAGGATGA+AGG | 0.616374 | 1:+78160910 | None:intergenic |
| TGGAACGAATCGTGAATCGA+TGG | 0.619092 | 1:+78160951 | None:intergenic |
| ATGTTTGATTGATCGAATTG+GGG | 0.621330 | 1:+78160981 | None:intergenic |
| TGGCGGCGGAGGAAGCTGCA+CGG | 0.623515 | 1:+78160786 | None:intergenic |
| GCATTGGAATATGTGAATTG+GGG | 0.628373 | 1:+78160889 | None:intergenic |
| GGAGGCTCTTGAGAATGTGA+AGG | 0.648124 | 1:-78160577 | MsG0180004451.01.T01:CDS |
| TGAGATGATGAGGATGAAGG+TGG | 0.660814 | 1:+78160913 | None:intergenic |
| AGGATCCTATTCTTGCAGAG+TGG | 0.663088 | 1:-78160470 | MsG0180004451.01.T01:CDS |
| TGCACAGATAATTACGCCGG+AGG | 0.666682 | 1:-78160595 | MsG0180004451.01.T01:CDS |
| GAATTGGGGTTGAGATGATG+AGG | 0.677929 | 1:+78160903 | None:intergenic |
| AGATGCACAGATAATTACGC+CGG | 0.679077 | 1:-78160598 | MsG0180004451.01.T01:CDS |
| ACTAACTTGATATTGCGGAA+CGG | 0.699014 | 1:+78160729 | None:intergenic |
| GGAACGGAGTAAGCAGCAGG+CGG | 0.735035 | 1:+78160745 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATTAATTAACGAAT+TGG | + | Chr1:78160977-78160996 | None:intergenic | 10.0% |
| !! | TTTAATGTATATTGGAAATT+TGG | - | Chr1:78160995-78161014 | MsG0180004451.01.T01:five_prime_UTR | 15.0% |
| !! | AAAATACTAACTTGATATTG+CGG | + | Chr1:78160646-78160665 | None:intergenic | 20.0% |
| !! | TCAATTTGTATTTGGAAATT+GGG | - | Chr1:78160676-78160695 | MsG0180004451.01.T01:intron | 20.0% |
| !! | TTCAATTTGTATTTGGAAAT+TGG | - | Chr1:78160675-78160694 | MsG0180004451.01.T01:intron | 20.0% |
| !!! | TCTTCTTTTCAATTTGTATT+TGG | - | Chr1:78160668-78160687 | MsG0180004451.01.T01:intron | 20.0% |
| ! | AATGTTTGATTGATCGAATT+GGG | + | Chr1:78160390-78160409 | None:intergenic | 25.0% |
| ATGTTTGATTGATCGAATTG+GGG | + | Chr1:78160389-78160408 | None:intergenic | 30.0% | |
| ATTTGATTGATTGTGTTGTG+TGG | - | Chr1:78160718-78160737 | MsG0180004451.01.T01:intron | 30.0% | |
| CAATGTTTGATTGATCGAAT+TGG | + | Chr1:78160391-78160410 | None:intergenic | 30.0% | |
| GAAATTGGGAAAAGAGAATT+TGG | - | Chr1:78160690-78160709 | MsG0180004451.01.T01:intron | 30.0% | |
| ACTAACTTGATATTGCGGAA+CGG | + | Chr1:78160641-78160660 | None:intergenic | 35.0% | |
| ATTGGAAATTTGGTTGTGAG+AGG | - | Chr1:78161005-78161024 | MsG0180004451.01.T01:five_prime_UTR | 35.0% | |
| CATGATGATACAATACCTTC+AGG | + | Chr1:78160923-78160942 | None:intergenic | 35.0% | |
| GCATTGGAATATGTGAATTG+GGG | + | Chr1:78160481-78160500 | None:intergenic | 35.0% | |
| ! | GGAAAATCTAAAATCGCGTT+TGG | + | Chr1:78160368-78160387 | None:intergenic | 35.0% |
| ! | GGCATTGGAATATGTGAATT+GGG | + | Chr1:78160482-78160501 | None:intergenic | 35.0% |
| ! | GTTTGGTTTAGGTTTGTTTG+AGG | + | Chr1:78160351-78160370 | None:intergenic | 35.0% |
| ! | TCTAAAATCGCGTTTGGTTT+AGG | + | Chr1:78160362-78160381 | None:intergenic | 35.0% |
| !!! | GTAGTGTGTGTTTGGTTTTT+CGG | - | Chr1:78161027-78161046 | MsG0180004451.01.T01:five_prime_UTR | 35.0% |
| AGATGCACAGATAATTACGC+CGG | - | Chr1:78160769-78160788 | MsG0180004451.01.T01:CDS | 40.0% | |
| ATTGTGTTGTGTGGTTGAAC+AGG | - | Chr1:78160727-78160746 | MsG0180004451.01.T01:intron | 40.0% | |
| TTGTTGAAGGTGAAAGGGAA+CGG | + | Chr1:78160515-78160534 | None:intergenic | 40.0% | |
| !! | GGGCATTGGAATATGTGAAT+TGG | + | Chr1:78160483-78160502 | None:intergenic | 40.0% |
| AGGATCCTATTCTTGCAGAG+TGG | - | Chr1:78160897-78160916 | MsG0180004451.01.T01:CDS | 45.0% | |
| CCAAGAAGAAAGCTGTTCCT+CGG | - | Chr1:78160852-78160871 | MsG0180004451.01.T01:CDS | 45.0% | |
| GAATTGGGGTTGAGATGATG+AGG | + | Chr1:78160467-78160486 | None:intergenic | 45.0% | |
| GGTTGAGATGATGAGGATGA+AGG | + | Chr1:78160460-78160479 | None:intergenic | 45.0% | |
| TGAGATGATGAGGATGAAGG+TGG | + | Chr1:78160457-78160476 | None:intergenic | 45.0% | |
| TGGAACGAATCGTGAATCGA+TGG | + | Chr1:78160419-78160438 | None:intergenic | 45.0% | |
| TGTGAGAGGTAGTGTGTGTT+TGG | - | Chr1:78161019-78161038 | MsG0180004451.01.T01:five_prime_UTR | 45.0% | |
| TGTTGAAGGTGAAAGGGAAC+GGG | + | Chr1:78160514-78160533 | None:intergenic | 45.0% | |
| TTCACATTCTCAAGAGCCTC+CGG | + | Chr1:78160791-78160810 | None:intergenic | 45.0% | |
| !!! | TAATTTATTTTAATGTATAT+TGG | - | Chr1:78160987-78161006 | MsG0180004451.01.T01:five_prime_UTR | 5.0% |
| AAAGGGAACGGGGAAGTAAG+GGG | + | Chr1:78160503-78160522 | None:intergenic | 50.0% | |
| ATTCTTGCAGAGTGGCCTGA+AGG | - | Chr1:78160905-78160924 | MsG0180004451.01.T01:CDS | 50.0% | |
| CCGAGGAACAGCTTTCTTCT+TGG | + | Chr1:78160855-78160874 | None:intergenic | 50.0% | |
| CTCAACATCGCTACTCGCAA+TGG | + | Chr1:78160819-78160838 | None:intergenic | 50.0% | |
| GAAAGCTGCTGGTCAAGCTT+GGG | - | Chr1:78160874-78160893 | MsG0180004451.01.T01:CDS | 50.0% | |
| GAAAGGGAACGGGGAAGTAA+GGG | + | Chr1:78160504-78160523 | None:intergenic | 50.0% | |
| GGAGGCTCTTGAGAATGTGA+AGG | - | Chr1:78160790-78160809 | MsG0180004451.01.T01:CDS | 50.0% | |
| GGCTCTTGAGAATGTGAAGG+CGG | - | Chr1:78160793-78160812 | MsG0180004451.01.T01:CDS | 50.0% | |
| GTTGAAGGTGAAAGGGAACG+GGG | + | Chr1:78160513-78160532 | None:intergenic | 50.0% | |
| TCAGGCCACTCTGCAAGAAT+AGG | + | Chr1:78160905-78160924 | None:intergenic | 50.0% | |
| TGAAAGGGAACGGGGAAGTA+AGG | + | Chr1:78160505-78160524 | None:intergenic | 50.0% | |
| TGCACAGATAATTACGCCGG+AGG | - | Chr1:78160772-78160791 | MsG0180004451.01.T01:CDS | 50.0% | |
| ! | GCGGGTTGTTGAAGGTGAAA+GGG | + | Chr1:78160520-78160539 | None:intergenic | 50.0% |
| ! | TGCGGGTTGTTGAAGGTGAA+AGG | + | Chr1:78160521-78160540 | None:intergenic | 50.0% |
| !! | GGTGGTGTCGTCATTGCAAT+TGG | + | Chr1:78160439-78160458 | None:intergenic | 50.0% |
| GGAAAGCTGCTGGTCAAGCT+TGG | - | Chr1:78160873-78160892 | MsG0180004451.01.T01:CDS | 55.0% | |
| ! | AACGGGGAAGTAAGGGGCAT+TGG | + | Chr1:78160497-78160516 | None:intergenic | 55.0% |
| ! | AGGTGGTTGCGGGTTGTTGA+AGG | + | Chr1:78160528-78160547 | None:intergenic | 55.0% |
| AGCTGCTGGTCAAGCTTGGG+AGG | - | Chr1:78160877-78160896 | MsG0180004451.01.T01:CDS | 60.0% | |
| CTTCCTCCGCCGCCAATTGT+CGG | - | Chr1:78160589-78160608 | MsG0180004451.01.T01:CDS | 60.0% | |
| GCGTAGTGAGAGGTGGTTGC+GGG | + | Chr1:78160538-78160557 | None:intergenic | 60.0% | |
| GCTGTTCCTCGGAAAGCTGC+TGG | - | Chr1:78160863-78160882 | MsG0180004451.01.T01:CDS | 60.0% | |
| GCTTGACCAGCAGCTTTCCG+AGG | + | Chr1:78160872-78160891 | None:intergenic | 60.0% | |
| GGAACGGAGTAAGCAGCAGG+CGG | + | Chr1:78160625-78160644 | None:intergenic | 60.0% | |
| GGCGTAGTGAGAGGTGGTTG+CGG | + | Chr1:78160539-78160558 | None:intergenic | 60.0% | |
| GTAAGCAGCAGGCGGTGGAA+CGG | + | Chr1:78160617-78160636 | None:intergenic | 60.0% | |
| TAAGCAGCAGGCGGTGGAAC+GGG | + | Chr1:78160616-78160635 | None:intergenic | 60.0% | |
| TGCGGAACGGAGTAAGCAGC+AGG | + | Chr1:78160628-78160647 | None:intergenic | 60.0% | |
| AAGCAGCAGGCGGTGGAACG+GGG | + | Chr1:78160615-78160634 | None:intergenic | 65.0% | |
| ACGGAGTAAGCAGCAGGCGG+TGG | + | Chr1:78160622-78160641 | None:intergenic | 65.0% | |
| GGAACGGGGCCGACAATTGG+CGG | + | Chr1:78160601-78160620 | None:intergenic | 65.0% | |
| GGTGGAACGGGGCCGACAAT+TGG | + | Chr1:78160604-78160623 | None:intergenic | 65.0% | |
| GTAGGGTGCGGCGTAGTGAG+AGG | + | Chr1:78160548-78160567 | None:intergenic | 65.0% | |
| ACGGGGCCGACAATTGGCGG+CGG | + | Chr1:78160598-78160617 | None:intergenic | 70.0% | |
| GGGTGCGGCGTAGTGAGAGG+TGG | + | Chr1:78160545-78160564 | None:intergenic | 70.0% | |
| TGGCGGCGGAGGAAGCTGCA+CGG | + | Chr1:78160584-78160603 | None:intergenic | 70.0% | |
| ACGGCGGGGGTGGCGACGTA+GGG | + | Chr1:78160565-78160584 | None:intergenic | 75.0% | |
| AGGAAGCTGCACGGCGGGGG+TGG | + | Chr1:78160575-78160594 | None:intergenic | 75.0% | |
| CGGAGGAAGCTGCACGGCGG+GGG | + | Chr1:78160578-78160597 | None:intergenic | 75.0% | |
| CGGCGGAGGAAGCTGCACGG+CGG | + | Chr1:78160581-78160600 | None:intergenic | 75.0% | |
| GCGGAGGAAGCTGCACGGCG+GGG | + | Chr1:78160579-78160598 | None:intergenic | 75.0% | |
| GGCGGAGGAAGCTGCACGGC+GGG | + | Chr1:78160580-78160599 | None:intergenic | 75.0% | |
| GGGCCGACAATTGGCGGCGG+AGG | + | Chr1:78160595-78160614 | None:intergenic | 75.0% | |
| GGGGGTGGCGACGTAGGGTG+CGG | + | Chr1:78160560-78160579 | None:intergenic | 75.0% | |
| ! | CACGGCGGGGGTGGCGACGT+AGG | + | Chr1:78160566-78160585 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 78160327 | 78161062 | 78160327 | ID=MsG0180004451.01;Name=MsG0180004451.01 |
| Chr1 | mRNA | 78160327 | 78161062 | 78160327 | ID=MsG0180004451.01.T01;Parent=MsG0180004451.01;Name=MsG0180004451.01.T01;_AED=0.48;_eAED=0.51;_QI=118|0.5|0.66|1|1|1|3|0|139 |
| Chr1 | exon | 78160327 | 78160358 | 78160327 | ID=MsG0180004451.01.T01:exon:45288;Parent=MsG0180004451.01.T01 |
| Chr1 | exon | 78160463 | 78160640 | 78160463 | ID=MsG0180004451.01.T01:exon:45287;Parent=MsG0180004451.01.T01 |
| Chr1 | exon | 78160735 | 78161062 | 78160735 | ID=MsG0180004451.01.T01:exon:45286;Parent=MsG0180004451.01.T01 |
| Chr1 | five_prime_UTR | 78160945 | 78161062 | 78160945 | ID=MsG0180004451.01.T01:five_prime_utr;Parent=MsG0180004451.01.T01 |
| Chr1 | CDS | 78160735 | 78160944 | 78160735 | ID=MsG0180004451.01.T01:cds;Parent=MsG0180004451.01.T01 |
| Chr1 | CDS | 78160463 | 78160640 | 78160463 | ID=MsG0180004451.01.T01:cds;Parent=MsG0180004451.01.T01 |
| Chr1 | CDS | 78160327 | 78160358 | 78160327 | ID=MsG0180004451.01.T01:cds;Parent=MsG0180004451.01.T01 |
| Gene Sequence |
| Protein sequence |
