AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008524.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008524.01.T01 MTR_2g044550 86.572 566 14 3 4 526 169 715 0.0 986
MsG0280008524.01.T01 MTR_8g022980 58.393 560 194 8 4 526 160 717 0.0 605
MsG0280008524.01.T01 MTR_8g022980 58.393 560 194 8 4 526 32 589 0.0 605
MsG0280008524.01.T01 MTR_8g022980 58.621 522 178 7 41 526 1 520 0.0 562
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008524.01.T01 AT3G43240 60.727 550 177 9 4 526 163 700 0.0 642

Find 114 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTAAACCATTGTGCTTAAT+TGG 0.120497 2:-33409060 None:intergenic
GAAGGATGTAATGCAATTTC+TGG 0.171195 2:+33409319 MsG0280008524.01.T01:CDS
CCCTCAAAATATCCTGAAAA+AGG 0.204985 2:-33408991 None:intergenic
GTTAGGCGTTGCTAGTATTC+AGG 0.226328 2:+33408684 MsG0280008524.01.T01:CDS
TTCTGCTCATATATCACTTT+TGG 0.235466 2:+33407281 MsG0280008524.01.T01:CDS
TCAAAATCGGACGAGGTATT+TGG 0.237917 2:+33407053 MsG0280008524.01.T01:CDS
CCAATTAAGCACAATGGTTT+AGG 0.261786 2:+33409060 MsG0280008524.01.T01:CDS
GCAAGGACTCGGAGCATTTA+AGG 0.276262 2:+33410555 MsG0280008524.01.T01:CDS
TTAACTCTAGAGCATGATTC+TGG 0.305574 2:-33408859 None:intergenic
GCTAGAGAAAACAATATCTT+TGG 0.338685 2:-33408788 None:intergenic
GAAATTGCATTACATCCTTC+AGG 0.347475 2:-33409316 None:intergenic
CAAGAGGAGGCTTTCATGTT+GGG 0.358461 2:+33409537 MsG0280008524.01.T01:CDS
CTGGACAAGTTGACTATTCT+CGG 0.378507 2:-33407462 None:intergenic
CATGGACCAACTTCAATGTT+AGG 0.379866 2:-33405847 None:intergenic
GTGTGGTGAGTGGGCTCATT+TGG 0.380580 2:+33410520 MsG0280008524.01.T01:CDS
TTAGCATTCAGAACGGCATC+AGG 0.387346 2:-33409392 None:intergenic
TTCTGTGCTTGATCCTCAAT+TGG 0.387951 2:+33411136 MsG0280008524.01.T01:CDS
ATTGGTAAAGGTAGGTTTGT+AGG 0.388619 2:+33411154 MsG0280008524.01.T01:CDS
ACAGTAGCGCAGCAGGTGAC+TGG 0.395006 2:+33410483 MsG0280008524.01.T01:intron
GTGGATTCAAAGATATTATC+TGG 0.397675 2:-33409134 None:intergenic
ACCTCTGAGCAAACTCGTAT+TGG 0.406911 2:-33409189 None:intergenic
TTTATAGAAGAACTAGTCTC+AGG 0.433816 2:-33405903 None:intergenic
TGGCGATGAGACTGAGGGAT+TGG 0.441828 2:-33408958 None:intergenic
AAACCTACCTTTACCAATTG+AGG 0.447186 2:-33411149 None:intergenic
ATGTTGGGAATGGTATCAAT+TGG 0.448776 2:+33409552 MsG0280008524.01.T01:CDS
AGACGCTTGTTTCAATGATC+AGG 0.449178 2:+33407317 MsG0280008524.01.T01:CDS
TTTGTATGCGTGTTCCTACA+TGG 0.452207 2:+33407573 MsG0280008524.01.T01:CDS
TTAGGCGTTGCTAGTATTCA+GGG 0.466983 2:+33408685 MsG0280008524.01.T01:CDS
TTGAAGATAATGGCAGTGAT+AGG 0.469399 2:+33408908 MsG0280008524.01.T01:CDS
TGGGCTCATTTGGTTGTGAT+AGG 0.471547 2:+33410530 MsG0280008524.01.T01:CDS
GTTCATGGCTAGGAATTGCC+TGG 0.478110 2:-33407481 None:intergenic
CAGAAGGGCAGCGGTAAGCT+TGG 0.479229 2:+33405802 MsG0280008524.01.T01:CDS
TCCTTCGTGTCTGCTTCACA+TGG 0.479727 2:-33405865 None:intergenic
AGGCAGCGGTACGACACATT+AGG 0.481904 2:-33408655 None:intergenic
CGTTCTGAATGCTAAACGTC+TGG 0.484571 2:+33409400 MsG0280008524.01.T01:CDS
TTTCCTAGAGCCAATGTACA+TGG 0.486337 2:+33411088 MsG0280008524.01.T01:CDS
GTTGGAAAGCATCCCATGTA+TGG 0.489682 2:-33405720 None:intergenic
TGTGATAGGCGGCAAGGACT+CGG 0.492876 2:+33410544 MsG0280008524.01.T01:CDS
ATGCAATTTCTGGTTCTTCG+AGG 0.493393 2:+33409329 MsG0280008524.01.T01:CDS
TCTAGAGCATGATTCTGGTT+CGG 0.495832 2:-33408854 None:intergenic
TGTTCCTACATGGGCTTCAC+AGG 0.500006 2:+33407583 MsG0280008524.01.T01:CDS
CTGTGGTATGTGTGGTGAGT+GGG 0.501449 2:+33410511 MsG0280008524.01.T01:CDS
GGGGATGTAAACTTCAAAAT+CGG 0.503125 2:+33407040 MsG0280008524.01.T01:CDS
TGAAGCAGACACGAAGGAAG+AGG 0.507245 2:+33405870 MsG0280008524.01.T01:CDS
TCAAGAGGAGGCTTTCATGT+TGG 0.508202 2:+33409536 MsG0280008524.01.T01:CDS
GTCAACAACAGTAGCGCAGC+AGG 0.516609 2:+33410476 MsG0280008524.01.T01:intron
TACCGCTGCCTAGTTATGTT+AGG 0.522097 2:+33408667 MsG0280008524.01.T01:CDS
GCTGCTTGGAGAGGAGGTGG+TGG 0.523024 2:-33407207 None:intergenic
TGCAATTTCTGGTTCTTCGA+GGG 0.523821 2:+33409330 MsG0280008524.01.T01:CDS
CGAGAATAGTCAACTTGTCC+AGG 0.524411 2:+33407463 MsG0280008524.01.T01:CDS
GATCTTCGAGGCTCGTATGA+AGG 0.532815 2:-33407515 None:intergenic
GAAAGCATCCCATGTATGGC+TGG 0.537247 2:-33405716 None:intergenic
TAGCAACGCCTAACATAACT+AGG 0.538395 2:-33408675 None:intergenic
TTGTATGCGTGTTCCTACAT+GGG 0.540688 2:+33407574 MsG0280008524.01.T01:CDS
AAATCGGACGAGGTATTTGG+TGG 0.540805 2:+33407056 MsG0280008524.01.T01:CDS
TTAGCTCATGATGATGTAGA+TGG 0.541719 2:+33410344 MsG0280008524.01.T01:CDS
GTAGTACATCCAGCCATACA+TGG 0.542147 2:+33405707 MsG0280008524.01.T01:CDS
AATGCTGCTTATTGTGTCAC+AGG 0.542245 2:+33410369 MsG0280008524.01.T01:CDS
TTCAAACACACTAGATCCAC+AGG 0.544026 2:-33407549 None:intergenic
GCTACTGAAGCTGATCTTCG+AGG 0.548233 2:-33407527 None:intergenic
GGAGGCTTTCATGTTGGGAA+TGG 0.550648 2:+33409542 MsG0280008524.01.T01:CDS
GAACCTCCTAACATTGAAGT+TGG 0.554306 2:+33405841 MsG0280008524.01.T01:CDS
CAAGGCCACCTTGTGGAATG+AGG 0.556124 2:-33409361 None:intergenic
CTTGTTTCAATGATCAGGCA+CGG 0.556320 2:+33407322 MsG0280008524.01.T01:CDS
GTTGCTGCTTGGAGAGGAGG+TGG 0.556794 2:-33407210 None:intergenic
CAGTAGCGCAGCAGGTGACT+GGG 0.557484 2:+33410484 MsG0280008524.01.T01:intron
GCTTGATCCTCAATTGGTAA+AGG 0.557537 2:+33411142 MsG0280008524.01.T01:CDS
TAAAAGATGACTGAGCAAGT+TGG 0.561412 2:-33405738 None:intergenic
TTGTTTCAATGATCAGGCAC+GGG 0.562754 2:+33407323 MsG0280008524.01.T01:CDS
CGGCATCAGGGAACTCAGCA+AGG 0.574376 2:-33409379 None:intergenic
GGCGTGAAAGTTGAAGATAA+TGG 0.577013 2:+33408898 MsG0280008524.01.T01:CDS
TTAACACTAGCCATGTACAT+TGG 0.578866 2:-33411098 None:intergenic
AATCGGAAGGAGAAAGATAA+CGG 0.581245 2:+33408763 MsG0280008524.01.T01:CDS
TGCGTGAGAATGTTGCTGCT+TGG 0.581290 2:-33407221 None:intergenic
GATCCTCAATTGGTAAAGGT+AGG 0.585308 2:+33411146 MsG0280008524.01.T01:CDS
GCTCATTTGGTTGTGATAGG+CGG 0.586606 2:+33410533 MsG0280008524.01.T01:CDS
AATGTTGCTGCTTGGAGAGG+AGG 0.594965 2:-33407213 None:intergenic
GCTGGAGGCATCAACCAACT+AGG 0.596103 2:-33408814 None:intergenic
ACTGTGGTATGTGTGGTGAG+TGG 0.596504 2:+33410510 MsG0280008524.01.T01:CDS
TAGCCATGTACATTGGCTCT+AGG 0.598362 2:-33411091 None:intergenic
CGCCTAACATAACTAGGCAG+CGG 0.603194 2:-33408669 None:intergenic
CATGTTCCAATTAAGCACAA+TGG 0.605715 2:+33409054 MsG0280008524.01.T01:CDS
GGGAATGGTATCAATTGGAA+AGG 0.606924 2:+33409557 MsG0280008524.01.T01:CDS
TTATAGAAGAACTAGTCTCA+GGG 0.609566 2:-33405902 None:intergenic
CGTGGATATATCACAGCGCA+TGG 0.614411 2:-33407253 None:intergenic
GTTAAATCTATCAATGCTAG+TGG 0.615417 2:+33408877 MsG0280008524.01.T01:CDS
GGACCAACTTCAATGTTAGG+AGG 0.616126 2:-33405844 None:intergenic
TTTGGTTGTGATAGGCGGCA+AGG 0.616179 2:+33410538 MsG0280008524.01.T01:CDS
GAGGCATCAACCAACTAGGA+TGG 0.619735 2:-33408810 None:intergenic
CATACCTCACAACAGTCAGA+AGG 0.629474 2:+33405786 MsG0280008524.01.T01:CDS
CACAACAGTCAGAAGGGCAG+CGG 0.630640 2:+33405793 MsG0280008524.01.T01:CDS
TTTCTGTTTGTAACTGAACG+AGG 0.636062 2:-33409084 None:intergenic
TGGGTGAACTGTGGTATGTG+TGG 0.638192 2:+33410503 MsG0280008524.01.T01:CDS
AACTCAGCAAGGCCACCTTG+TGG 0.644829 2:-33409368 None:intergenic
GTAAACTTCAAAATCGGACG+AGG 0.646275 2:+33407046 MsG0280008524.01.T01:CDS
GAGAATGTTGCTGCTTGGAG+AGG 0.646813 2:-33407216 None:intergenic
TAGCATTCAGAACGGCATCA+GGG 0.648273 2:-33409391 None:intergenic
TAGTACATCCAGCCATACAT+GGG 0.649585 2:+33405708 MsG0280008524.01.T01:CDS
CTGCCCTTCTGACTGTTGTG+AGG 0.649813 2:-33405790 None:intergenic
AGATCAGCTTCAGTAGCCTG+TGG 0.650358 2:+33407533 MsG0280008524.01.T01:CDS
ATACCTCACAACAGTCAGAA+GGG 0.652494 2:+33405787 MsG0280008524.01.T01:CDS
TTAACCTGTGAAGCCCATGT+AGG 0.655672 2:-33407587 None:intergenic
TTGTGCTTAATTGGAACATG+AGG 0.656277 2:-33409051 None:intergenic
TGTTGCACCGAATAAAACAT+CGG 0.656853 2:-33407104 None:intergenic
CAGACGTTTAGCATTCAGAA+CGG 0.667993 2:-33409399 None:intergenic
CATACTCGCCTCATTCCACA+AGG 0.680159 2:+33409353 MsG0280008524.01.T01:CDS
AGCAACATTCTCACGCAGCG+TGG 0.682119 2:+33407227 MsG0280008524.01.T01:CDS
TCCAATACGAGTTTGCTCAG+AGG 0.694110 2:+33409188 MsG0280008524.01.T01:CDS
ACTATACTGTGTGCAAAACG+AGG 0.696352 2:+33405762 MsG0280008524.01.T01:CDS
TCCATGTGAAGCAGACACGA+AGG 0.700858 2:+33405864 MsG0280008524.01.T01:CDS
GTGACAGGAGGAATTCCTGA+AGG 0.703165 2:+33409301 MsG0280008524.01.T01:intron
ACTCGCCTCATTCCACAAGG+TGG 0.716807 2:+33409356 MsG0280008524.01.T01:CDS
TATATGAGCAGAACTAGACG+TGG 0.718027 2:-33407271 None:intergenic
GCAGGTGACTGGGTGAACTG+TGG 0.732040 2:+33410494 MsG0280008524.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATAATAAAGTTCTGT+AGG + Chr2:33408355-33408374 MsG0280008524.01.T01:intron 15.0%
!! TATATATGTTAGATACTTTA+TGG + Chr2:33408437-33408456 MsG0280008524.01.T01:intron 15.0%
!! TTATATAATAAAGTTCTGTA+GGG + Chr2:33408356-33408375 MsG0280008524.01.T01:intron 15.0%
!!! TAAATTGTACCTTTTATTTA+TGG + Chr2:33408545-33408564 MsG0280008524.01.T01:intron 15.0%
!!! TAATTGTTTTTTCTTTCTTA+AGG + Chr2:33407607-33407626 MsG0280008524.01.T01:intron 15.0%
!! AAACAATCACTTAAATTATG+AGG - Chr2:33406947-33406966 None:intergenic 20.0%
!! ACAATTGTAGTAATTGTTAT+AGG + Chr2:33406267-33406286 MsG0280008524.01.T01:intron 20.0%
!! ACATAAAATCATACTAAACT+AGG - Chr2:33409887-33409906 None:intergenic 20.0%
!! ATGCAATGAAATGTTTATTA+AGG - Chr2:33409664-33409683 None:intergenic 20.0%
!! ATTTCCATAATATTGTATAC+AGG - Chr2:33410245-33410264 None:intergenic 20.0%
!! CAAACTTTATGAATAAATTG+AGG + Chr2:33410175-33410194 MsG0280008524.01.T01:intron 20.0%
!! GAAATAAATCAGTTTATAAC+AGG - Chr2:33406058-33406077 None:intergenic 20.0%
!! TATGAAATGAAACTGATAAA+AGG + Chr2:33410696-33410715 MsG0280008524.01.T01:intron 20.0%
!! TGTAATCAATGTATTACTTA+AGG + Chr2:33406407-33406426 MsG0280008524.01.T01:intron 20.0%
!! TTCAATACATATATTAAGTC+TGG + Chr2:33408059-33408078 MsG0280008524.01.T01:intron 20.0%
!! TTTCCTAAAAGTAAAATTCT+AGG - Chr2:33409730-33409749 None:intergenic 20.0%
!!! ATTGTGAAAATGATACTTTT+GGG + Chr2:33410216-33410235 MsG0280008524.01.T01:intron 20.0%
!!! TTTTTACCAGCTATTTTTAA+TGG - Chr2:33408321-33408340 None:intergenic 20.0%
! AAAAAAAAGTCCATGAAGTA+TGG - Chr2:33408581-33408600 None:intergenic 25.0%
! AAAGTACAAGATTCCTAATA+AGG - Chr2:33409828-33409847 None:intergenic 25.0%
! AACAAACAGAATAACATTGT+AGG - Chr2:33407154-33407173 None:intergenic 25.0%
! AACTTTCCATTAAAAATAGC+TGG + Chr2:33408312-33408331 MsG0280008524.01.T01:intron 25.0%
! AAGGTCAACAAAAACATATA+CGG - Chr2:33409220-33409239 None:intergenic 25.0%
! AGATTTAGAGATTAATGAGT+TGG + Chr2:33406815-33406834 MsG0280008524.01.T01:intron 25.0%
! AGGTATTAATCAACAATATC+AGG + Chr2:33410575-33410594 MsG0280008524.01.T01:intron 25.0%
! ATAACATTGTAGGTAAAAGA+TGG - Chr2:33407144-33407163 None:intergenic 25.0%
! ATTAGATTGATTATCCAAAC+AGG - Chr2:33410723-33410742 None:intergenic 25.0%
! CATAATCCAACAAAATAAAG+TGG - Chr2:33410641-33410660 None:intergenic 25.0%
! CATTATGTTTGTTCCTAATT+GGG + Chr2:33406462-33406481 MsG0280008524.01.T01:intron 25.0%
! CTCAAAATGTAAGATTATCT+AGG - Chr2:33409774-33409793 None:intergenic 25.0%
! GATGATAAAATAATGCTACA+AGG + Chr2:33407866-33407885 MsG0280008524.01.T01:intron 25.0%
! TAAATCAGTTTATAACAGGT+AGG - Chr2:33406054-33406073 None:intergenic 25.0%
! TCATTGTAGCCATAAATAAA+AGG - Chr2:33408557-33408576 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG + Chr2:33406846-33406865 MsG0280008524.01.T01:intron 25.0%
! TGTTGGATTATGATCAATAT+AGG + Chr2:33410649-33410668 MsG0280008524.01.T01:intron 25.0%
! TTAGTAATCCATTCCTTATT+AGG + Chr2:33409812-33409831 MsG0280008524.01.T01:intron 25.0%
! TTATATCACCTTAACGTAAT+TGG + Chr2:33407952-33407971 MsG0280008524.01.T01:intron 25.0%
! TTGTAATAGTTCTTACAATG+TGG + Chr2:33406028-33406047 MsG0280008524.01.T01:intron 25.0%
! TTTCAACTAAACCATTTGAT+TGG - Chr2:33407693-33407712 None:intergenic 25.0%
! TTTGCAATTTCATGAATGAA+AGG + Chr2:33407889-33407908 MsG0280008524.01.T01:intron 25.0%
!! CATTGTGAAAATGATACTTT+TGG + Chr2:33410215-33410234 MsG0280008524.01.T01:intron 25.0%
!! CTAAGAAACTTGAGTATTTT+AGG + Chr2:33409508-33409527 MsG0280008524.01.T01:intron 25.0%
!! GTCTTCTTTTCTTTTGTAAT+CGG + Chr2:33408746-33408765 MsG0280008524.01.T01:CDS 25.0%
!! GTTTCTGTTATAGTTTTTCT+AGG - Chr2:33406786-33406805 None:intergenic 25.0%
!! TTAATGAGTTGGATCAAATA+TGG + Chr2:33406826-33406845 MsG0280008524.01.T01:intron 25.0%
!!! AAGGTAGTTTATTTTGTTCA+TGG - Chr2:33407499-33407518 None:intergenic 25.0%
!!! AATAGTTTTGACCAATCAAA+TGG + Chr2:33407679-33407698 MsG0280008524.01.T01:intron 25.0%
!!! AATTGTTATAGGTTAGTTTG+TGG + Chr2:33406278-33406297 MsG0280008524.01.T01:intron 25.0%
!!! AATTTCTTTTTGCTGTTGTA+GGG + Chr2:33410269-33410288 MsG0280008524.01.T01:intron 25.0%
!!! GCTGTTTTCTTAAACTATAT+TGG + Chr2:33410815-33410834 MsG0280008524.01.T01:intron 25.0%
!!! TAATTTCTTTTTGCTGTTGT+AGG + Chr2:33410268-33410287 MsG0280008524.01.T01:intron 25.0%
!!! TAGTAAAGATGATGGAAAAT+AGG + Chr2:33406705-33406724 MsG0280008524.01.T01:intron 25.0%
!!! TCTTTTTAACTTGTATAGAG+AGG + Chr2:33409424-33409443 MsG0280008524.01.T01:CDS 25.0%
!!! TGTTGATTCTTTGTGATTTA+AGG - Chr2:33406570-33406589 None:intergenic 25.0%
!!! TTTTTTCATTAATGGCTTCT+TGG + Chr2:33408601-33408620 MsG0280008524.01.T01:intron 25.0%
AAACTGCAAATGGTTATTAC+AGG + Chr2:33411048-33411067 MsG0280008524.01.T01:intron 30.0%
AATACGAGATTTCTTCTTTG+TGG + Chr2:33405943-33405962 MsG0280008524.01.T01:intron 30.0%
ACAAACTTACTTCAGTACAT+AGG - Chr2:33406146-33406165 None:intergenic 30.0%
ACAAGATTCCTAATAAGGAA+TGG - Chr2:33409823-33409842 None:intergenic 30.0%
ACCTATAGTAGTAAAGATGA+TGG + Chr2:33406697-33406716 MsG0280008524.01.T01:intron 30.0%
ACTTCTATACCAATACAGAT+AGG + Chr2:33408504-33408523 MsG0280008524.01.T01:intron 30.0%
AGAAACTAGTAAGAAAGACA+TGG + Chr2:33409934-33409953 MsG0280008524.01.T01:intron 30.0%
ATGATCACCTAAAATGCAAA+TGG + Chr2:33410074-33410093 MsG0280008524.01.T01:intron 30.0%
ATGTAAGATTATCTAGGTAG+AGG - Chr2:33409768-33409787 None:intergenic 30.0%
CAAGAATAAAATAAGCGTAG+TGG + Chr2:33406590-33406609 MsG0280008524.01.T01:intron 30.0%
CCAATTAGGAACAAACATAA+TGG - Chr2:33406464-33406483 None:intergenic 30.0%
CCATTATGTTTGTTCCTAAT+TGG + Chr2:33406461-33406480 MsG0280008524.01.T01:intron 30.0%
CCTCAAAATATCCTGAAAAA+GGG - Chr2:33408993-33409012 None:intergenic 30.0%
GAATTTGCAAGATGCTAAAT+TGG + Chr2:33407779-33407798 MsG0280008524.01.T01:intron 30.0%
GCATCCTGTATACAATATTA+TGG + Chr2:33410238-33410257 MsG0280008524.01.T01:intron 30.0%
GCTAGAGAAAACAATATCTT+TGG - Chr2:33408791-33408810 None:intergenic 30.0%
GTGGATTCAAAGATATTATC+TGG - Chr2:33409137-33409156 None:intergenic 30.0%
GTTAAATCTATCAATGCTAG+TGG + Chr2:33408877-33408896 MsG0280008524.01.T01:CDS 30.0%
TAACAAACCTAAAGAAGCTA+TGG + Chr2:33406500-33406519 MsG0280008524.01.T01:intron 30.0%
TATTACTTAAGGCATATGCA+TGG + Chr2:33406418-33406437 MsG0280008524.01.T01:intron 30.0%
TCCATCATCTTTACTACTAT+AGG - Chr2:33406701-33406720 None:intergenic 30.0%
TCTTCTGTTAATTTAACAGC+TGG + Chr2:33407715-33407734 MsG0280008524.01.T01:intron 30.0%
TGTAAGATTATCTAGGTAGA+GGG - Chr2:33409767-33409786 None:intergenic 30.0%
TGTGTTTATGTTGCAAAAGA+AGG - Chr2:33407982-33408001 None:intergenic 30.0%
TTACTTGAATGAACTTGGTA+TGG + Chr2:33407739-33407758 MsG0280008524.01.T01:intron 30.0%
TTCTTAAGGTTTATGTCAGT+TGG + Chr2:33407621-33407640 MsG0280008524.01.T01:intron 30.0%
TTGATTACATTGTCTCCAAA+TGG - Chr2:33406396-33406415 None:intergenic 30.0%
TTGTCAAATAGAAGCTATAG+TGG + Chr2:33408127-33408146 MsG0280008524.01.T01:intron 30.0%
TTTCTCTGCAAAGACAATAA+CGG - Chr2:33410106-33410125 None:intergenic 30.0%
TTTGAGGGAGAAAAATATGA+TGG + Chr2:33409006-33409025 MsG0280008524.01.T01:CDS 30.0%
! AATTAAGTTTTGCTGCAATG+AGG + Chr2:33408935-33408954 MsG0280008524.01.T01:CDS 30.0%
! ATGTTTTTCTGTTTTCACTC+TGG + Chr2:33407002-33407021 MsG0280008524.01.T01:intron 30.0%
! CATCTCTCTTTTCTCTTAAA+AGG + Chr2:33406077-33406096 MsG0280008524.01.T01:intron 30.0%
! GGAAACTATTGAAGACTTTT+AGG + Chr2:33408080-33408099 MsG0280008524.01.T01:intron 30.0%
! GGCATGTATATTTTGTAGTA+AGG + Chr2:33406752-33406771 MsG0280008524.01.T01:intron 30.0%
! GTATTGGTATAGAAGTTAGA+AGG - Chr2:33408500-33408519 None:intergenic 30.0%
! TCTTTTCTTTTGTAATCGGA+AGG + Chr2:33408750-33408769 MsG0280008524.01.T01:CDS 30.0%
! TGAAGTAAGTTTGTTTCACA+CGG + Chr2:33406152-33406171 MsG0280008524.01.T01:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + Chr2:33409954-33409973 MsG0280008524.01.T01:intron 30.0%
! TTATAGAAGAACTAGTCTCA+GGG - Chr2:33405905-33405924 None:intergenic 30.0%
! TTCTGCTCATATATCACTTT+TGG + Chr2:33407281-33407300 MsG0280008524.01.T01:CDS 30.0%
! TTTATAGAAGAACTAGTCTC+AGG - Chr2:33405906-33405925 None:intergenic 30.0%
! TTTTCACCCTTTATGATGAA+TGG + Chr2:33410946-33410965 MsG0280008524.01.T01:intron 30.0%
! TTTTGTACCATAGCTTCTTT+AGG - Chr2:33406510-33406529 None:intergenic 30.0%
!! AAAAGTGTTCCTATCTGTAT+TGG - Chr2:33408516-33408535 None:intergenic 30.0%
!! AGAAACTTGAGTATTTTAGG+TGG + Chr2:33409511-33409530 MsG0280008524.01.T01:intron 30.0%
!! CAGCCTAGAATTTTACTTTT+AGG + Chr2:33409724-33409743 MsG0280008524.01.T01:intron 30.0%
!! GTGTTTTCCGATGTTTTATT+CGG + Chr2:33407097-33407116 MsG0280008524.01.T01:CDS 30.0%
!!! AGTTTATTTTGTTCATGGCT+AGG - Chr2:33407494-33407513 None:intergenic 30.0%
!!! ATCTTGTACTTTTTCTTCTG+AGG + Chr2:33409836-33409855 MsG0280008524.01.T01:intron 30.0%
!!! CCTTTTTCAGGATATTTTGA+GGG + Chr2:33408991-33409010 MsG0280008524.01.T01:CDS 30.0%
!!! TCTTACATTTTGAGTTCTAC+TGG + Chr2:33409780-33409799 MsG0280008524.01.T01:intron 30.0%
AAACCTACCTTTACCAATTG+AGG - Chr2:33411152-33411171 None:intergenic 35.0%
AAACTGTAAAACGAAGCTAC+AGG - Chr2:33408474-33408493 None:intergenic 35.0%
AAATCGCAGAAAACTGCAAA+TGG + Chr2:33411038-33411057 MsG0280008524.01.T01:intron 35.0%
AACCTGGATCATGAAAATAG+CGG - Chr2:33408282-33408301 None:intergenic 35.0%
AACTGATAAAAGGTCCTGTT+TGG + Chr2:33410706-33410725 MsG0280008524.01.T01:intron 35.0%
AAGCTTGGACCAAAAATTCT+CGG + Chr2:33405817-33405836 MsG0280008524.01.T01:CDS 35.0%
AAGGATCACCAATTACGTTA+AGG - Chr2:33407963-33407982 None:intergenic 35.0%
AATAGAACTGAAGGTAGCAA+AGG - Chr2:33409239-33409258 None:intergenic 35.0%
AATCGGAAGGAGAAAGATAA+CGG + Chr2:33408763-33408782 MsG0280008524.01.T01:CDS 35.0%
ATATGATTCTCCAAAAGCTG+AGG - Chr2:33407428-33407447 None:intergenic 35.0%
ATGGAAAATAGGCTTAGGTT+GGG + Chr2:33406716-33406735 MsG0280008524.01.T01:intron 35.0%
ATGTAACCAATCCCACTTAT+CGG + Chr2:33406882-33406901 MsG0280008524.01.T01:intron 35.0%
ATGTTGGGAATGGTATCAAT+TGG + Chr2:33409552-33409571 MsG0280008524.01.T01:CDS 35.0%
CAACAAAATAACCAACTTCG+TGG - Chr2:33410134-33410153 None:intergenic 35.0%
CATGTTCCAATTAAGCACAA+TGG + Chr2:33409054-33409073 MsG0280008524.01.T01:CDS 35.0%
CCAATTAAGCACAATGGTTT+AGG + Chr2:33409060-33409079 MsG0280008524.01.T01:CDS 35.0%
CCACTACCAATGAAAAAACA+TGG + Chr2:33409153-33409172 MsG0280008524.01.T01:CDS 35.0%
CCCTCAAAATATCCTGAAAA+AGG - Chr2:33408994-33409013 None:intergenic 35.0%
CCTAAACCATTGTGCTTAAT+TGG - Chr2:33409063-33409082 None:intergenic 35.0%
CGATTACCAGATTATACATG+TGG - Chr2:33407924-33407943 None:intergenic 35.0%
CTACAATGAACCATACTTCA+TGG + Chr2:33408568-33408587 MsG0280008524.01.T01:intron 35.0%
CTTTAACATGAGCACTTATG+TGG - Chr2:33410780-33410799 None:intergenic 35.0%
GAAATTGCATTACATCCTTC+AGG - Chr2:33409319-33409338 None:intergenic 35.0%
GAAGGATGTAATGCAATTTC+TGG + Chr2:33409319-33409338 MsG0280008524.01.T01:CDS 35.0%
GAATTTATGAAAGCCGTTTC+AGG - Chr2:33409705-33409724 None:intergenic 35.0%
GGGGATGTAAACTTCAAAAT+CGG + Chr2:33407040-33407059 MsG0280008524.01.T01:CDS 35.0%
GTAAGATTATCTAGGTAGAG+GGG - Chr2:33409766-33409785 None:intergenic 35.0%
TAAAAGATGACTGAGCAAGT+TGG - Chr2:33405741-33405760 None:intergenic 35.0%
TACTTTGTCTAACATGAGTG+CGG - Chr2:33408419-33408438 None:intergenic 35.0%
TCTCTACCACATGTATAATC+TGG + Chr2:33407915-33407934 MsG0280008524.01.T01:intron 35.0%
TGACACATAGAATGACAGTA+AGG + Chr2:33409612-33409631 MsG0280008524.01.T01:intron 35.0%
TGCAGATAACTTCATATGCA+TGG + Chr2:33406238-33406257 MsG0280008524.01.T01:intron 35.0%
TGGCATTTAGTGAATAGAGT+AGG + Chr2:33407799-33407818 MsG0280008524.01.T01:intron 35.0%
TGTACTAAACATCGTATTGC+AGG - Chr2:33408197-33408216 None:intergenic 35.0%
TGTTGCACCGAATAAAACAT+CGG - Chr2:33407107-33407126 None:intergenic 35.0%
TGTTGTTGACACAACATGAA+AGG - Chr2:33410466-33410485 None:intergenic 35.0%
TTAAAAGGATGCGTGCTTAT+TGG + Chr2:33406092-33406111 MsG0280008524.01.T01:intron 35.0%
TTAACACTAGCCATGTACAT+TGG - Chr2:33411101-33411120 None:intergenic 35.0%
TTATTGGAGTCATTAGAGGA+TGG + Chr2:33406108-33406127 MsG0280008524.01.T01:intron 35.0%
TTGTGCTTAATTGGAACATG+AGG - Chr2:33409054-33409073 None:intergenic 35.0%
TTTCTGTTTGTAACTGAACG+AGG - Chr2:33409087-33409106 None:intergenic 35.0%
! AGGTAAGACTTTTGTACATG+TGG + Chr2:33409444-33409463 MsG0280008524.01.T01:intron 35.0%
! CCTTCAGTTCTATTTTACGT+CGG + Chr2:33409245-33409264 MsG0280008524.01.T01:intron 35.0%
! GATCAAGCCATTTGCATTTT+AGG - Chr2:33410084-33410103 None:intergenic 35.0%
! GCTTCTTGGTATTTGTTAAC+AGG + Chr2:33408615-33408634 MsG0280008524.01.T01:intron 35.0%
! TCATCGCATTTTTCACCATT+TGG + Chr2:33406378-33406397 MsG0280008524.01.T01:intron 35.0%
! TTAGCTCATGATGATGTAGA+TGG + Chr2:33410344-33410363 MsG0280008524.01.T01:CDS 35.0%
! TTGAAGATAATGGCAGTGAT+AGG + Chr2:33408908-33408927 MsG0280008524.01.T01:CDS 35.0%
!! AAGACTTTTAGGCTGATTTC+TGG + Chr2:33408091-33408110 MsG0280008524.01.T01:intron 35.0%
!! AGATGATGGAAAATAGGCTT+AGG + Chr2:33406711-33406730 MsG0280008524.01.T01:intron 35.0%
!! GTATTTTAGGTGGTTTCAAG+AGG + Chr2:33409521-33409540 MsG0280008524.01.T01:intron 35.0%
!! GTTTATCCGTTACTGCTTTT+TGG + Chr2:33406191-33406210 MsG0280008524.01.T01:intron 35.0%
!! TTAACTCTAGAGCATGATTC+TGG - Chr2:33408862-33408881 None:intergenic 35.0%
!!! CATATATCACTTTTGGTGTC+TGG + Chr2:33407288-33407307 MsG0280008524.01.T01:CDS 35.0%
!!! CCATGTTTTTTCATTGGTAG+TGG - Chr2:33409156-33409175 None:intergenic 35.0%
!!! CCCTTTTTCAGGATATTTTG+AGG + Chr2:33408990-33409009 MsG0280008524.01.T01:CDS 35.0%
!!! CTTCTGCCACTTTATTTTGT+TGG + Chr2:33410632-33410651 MsG0280008524.01.T01:intron 35.0%
!!! TTACTTTTAGGAAAAGCACC+AGG + Chr2:33409736-33409755 MsG0280008524.01.T01:intron 35.0%
AAAGTTTGTGTTGTCGAACC+TGG - Chr2:33408298-33408317 None:intergenic 40.0%
AAATTTGACATGCTGCAGTG+TGG - Chr2:33411011-33411030 None:intergenic 40.0%
ACTATACTGTGTGCAAAACG+AGG + Chr2:33405762-33405781 MsG0280008524.01.T01:CDS 40.0%
AGACGCTTGTTTCAATGATC+AGG + Chr2:33407317-33407336 MsG0280008524.01.T01:CDS 40.0%
AGCTTGGACCAAAAATTCTC+GGG + Chr2:33405818-33405837 MsG0280008524.01.T01:CDS 40.0%
AGTCCTGCCATTCATCATAA+AGG - Chr2:33410956-33410975 None:intergenic 40.0%
AGTGAAACCTGATCCCAATT+AGG - Chr2:33406478-33406497 None:intergenic 40.0%
ATACCTCACAACAGTCAGAA+GGG + Chr2:33405787-33405806 MsG0280008524.01.T01:CDS 40.0%
ATGAGAACATCAGAGAGAGT+TGG + Chr2:33406668-33406687 MsG0280008524.01.T01:intron 40.0%
ATGTGTGGTAAGACTTAGAC+AGG + Chr2:33406633-33406652 MsG0280008524.01.T01:intron 40.0%
CAGACGTTTAGCATTCAGAA+CGG - Chr2:33409402-33409421 None:intergenic 40.0%
CATGGACCAACTTCAATGTT+AGG - Chr2:33405850-33405869 None:intergenic 40.0%
CCGACGTAAAATAGAACTGA+AGG - Chr2:33409248-33409267 None:intergenic 40.0%
CTGGCTTACTTGAATGAACT+TGG + Chr2:33407734-33407753 MsG0280008524.01.T01:intron 40.0%
CTTGTTTCAATGATCAGGCA+CGG + Chr2:33407322-33407341 MsG0280008524.01.T01:CDS 40.0%
GAACCTCCTAACATTGAAGT+TGG + Chr2:33405841-33405860 MsG0280008524.01.T01:CDS 40.0%
GAGAAATTAAGCCACGAAGT+TGG + Chr2:33410120-33410139 MsG0280008524.01.T01:intron 40.0%
GAGCATCCAAAAAGCAGTAA+CGG - Chr2:33406200-33406219 None:intergenic 40.0%
GAGTATACTAGAGAGTGAGA+TGG + Chr2:33410906-33410925 MsG0280008524.01.T01:intron 40.0%
GATCCTCAATTGGTAAAGGT+AGG + Chr2:33411146-33411165 MsG0280008524.01.T01:CDS 40.0%
GATGGAAAATAGGCTTAGGT+TGG + Chr2:33406715-33406734 MsG0280008524.01.T01:intron 40.0%
GCTTGATCCTCAATTGGTAA+AGG + Chr2:33411142-33411161 MsG0280008524.01.T01:CDS 40.0%
GGCGTGAAAGTTGAAGATAA+TGG + Chr2:33408898-33408917 MsG0280008524.01.T01:CDS 40.0%
GGGAATGGTATCAATTGGAA+AGG + Chr2:33409557-33409576 MsG0280008524.01.T01:CDS 40.0%
GTAAACTTCAAAATCGGACG+AGG + Chr2:33407046-33407065 MsG0280008524.01.T01:CDS 40.0%
GTCCTGCCATTCATCATAAA+GGG - Chr2:33410955-33410974 None:intergenic 40.0%
GTGCTTATTGGAGTCATTAG+AGG + Chr2:33406104-33406123 MsG0280008524.01.T01:intron 40.0%
GTTTGTTCCTAATTGGGATC+AGG + Chr2:33406468-33406487 MsG0280008524.01.T01:intron 40.0%
TAGCAACGCCTAACATAACT+AGG - Chr2:33408678-33408697 None:intergenic 40.0%
TAGTACATCCAGCCATACAT+GGG + Chr2:33405708-33405727 MsG0280008524.01.T01:CDS 40.0%
TATATGAGCAGAACTAGACG+TGG - Chr2:33407274-33407293 None:intergenic 40.0%
TGAGAACATCAGAGAGAGTT+GGG + Chr2:33406669-33406688 MsG0280008524.01.T01:intron 40.0%
TGGTAAGACTTAGACAGGAT+AGG + Chr2:33406638-33406657 MsG0280008524.01.T01:intron 40.0%
TGTAACCAATCCCACTTATC+GGG + Chr2:33406883-33406902 MsG0280008524.01.T01:intron 40.0%
TGTGTCTGAGTATGTGTGTA+AGG + Chr2:33410408-33410427 MsG0280008524.01.T01:intron 40.0%
TTCAAACACACTAGATCCAC+AGG - Chr2:33407552-33407571 None:intergenic 40.0%
TTCTGTGCTTGATCCTCAAT+TGG + Chr2:33411136-33411155 MsG0280008524.01.T01:CDS 40.0%
TTGTATGCGTGTTCCTACAT+GGG + Chr2:33407574-33407593 MsG0280008524.01.T01:CDS 40.0%
TTGTTTCAATGATCAGGCAC+GGG + Chr2:33407323-33407342 MsG0280008524.01.T01:CDS 40.0%
TTTATCCCGATAAGTGGGAT+TGG - Chr2:33406891-33406910 None:intergenic 40.0%
TTTCCTAGAGCCAATGTACA+TGG + Chr2:33411088-33411107 MsG0280008524.01.T01:CDS 40.0%
TTTGTATGCGTGTTCCTACA+TGG + Chr2:33407573-33407592 MsG0280008524.01.T01:CDS 40.0%
! AATGCTGCTTATTGTGTCAC+AGG + Chr2:33410369-33410388 MsG0280008524.01.T01:CDS 40.0%
! AGGTTTATGTCAGTTGGTCT+AGG + Chr2:33407627-33407646 MsG0280008524.01.T01:intron 40.0%
! CAAAAGCTTCTCCCTTTTTC+AGG + Chr2:33408979-33408998 MsG0280008524.01.T01:CDS 40.0%
! CAAGCTTTATCCCGATAAGT+GGG - Chr2:33406896-33406915 None:intergenic 40.0%
! CTGAAAAAGGGAGAAGCTTT+TGG - Chr2:33408981-33409000 None:intergenic 40.0%
! CTGGACAAGTTGACTATTCT+CGG - Chr2:33407465-33407484 None:intergenic 40.0%
! GAAAAATATGATGGAGACCG+TGG + Chr2:33409015-33409034 MsG0280008524.01.T01:CDS 40.0%
! GTATGTGCTGAAAAGTGCAA+TGG + Chr2:33406539-33406558 MsG0280008524.01.T01:intron 40.0%
! GTATGTGTTTCCTCAGCTTT+TGG + Chr2:33407415-33407434 MsG0280008524.01.T01:intron 40.0%
! TCAAAATCGGACGAGGTATT+TGG + Chr2:33407053-33407072 MsG0280008524.01.T01:CDS 40.0%
! TCTAGAGCATGATTCTGGTT+CGG - Chr2:33408857-33408876 None:intergenic 40.0%
! TTAGGCGTTGCTAGTATTCA+GGG + Chr2:33408685-33408704 MsG0280008524.01.T01:CDS 40.0%
! TTTTCTCTAGCCATCCTAGT+TGG + Chr2:33408800-33408819 MsG0280008524.01.T01:CDS 40.0%
!! AACCGCTATTTTCATGATCC+AGG + Chr2:33408277-33408296 MsG0280008524.01.T01:intron 40.0%
!! ATGCAATTTCTGGTTCTTCG+AGG + Chr2:33409329-33409348 MsG0280008524.01.T01:CDS 40.0%
!! GATAAGTGGGATTGGTTACA+TGG - Chr2:33406883-33406902 None:intergenic 40.0%
!! TGCAATTTCTGGTTCTTCGA+GGG + Chr2:33409330-33409349 MsG0280008524.01.T01:CDS 40.0%
!! TTGTTTTTCCCTGTTGTGAC+AGG + Chr2:33409286-33409305 MsG0280008524.01.T01:intron 40.0%
!! TTTTAGGTGGTTTCAAGAGG+AGG + Chr2:33409524-33409543 MsG0280008524.01.T01:intron 40.0%
!!! CTCTGGCTTTTCTACAGATA+CGG + Chr2:33407019-33407038 MsG0280008524.01.T01:intron 40.0%
!!! GAGGCTGATTTGATTTTCCA+CGG - Chr2:33409035-33409054 None:intergenic 40.0%
!!! TCGCAGCCATGTTTTTTCAT+TGG - Chr2:33409162-33409181 None:intergenic 40.0%
!!! TCTGGCTTTTCTACAGATAC+GGG + Chr2:33407020-33407039 MsG0280008524.01.T01:intron 40.0%
!!! TTTTTGCTGTTGTAGGGTGT+TGG + Chr2:33410275-33410294 MsG0280008524.01.T01:intron 40.0%
ACACGGTTGCTTGCATTTCT+TGG + Chr2:33406169-33406188 MsG0280008524.01.T01:intron 45.0%
ACCTCTGAGCAAACTCGTAT+TGG - Chr2:33409192-33409211 None:intergenic 45.0%
AGGACTACGCGAAAACTGAT+GGG + Chr2:33410970-33410989 MsG0280008524.01.T01:intron 45.0%
AGGATGTTACGTTGGATGTG+TGG + Chr2:33406618-33406637 MsG0280008524.01.T01:intron 45.0%
AGTGGTAGGCTTGGATTCTT+TGG + Chr2:33405978-33405997 MsG0280008524.01.T01:intron 45.0%
CAAGAGGAGGCTTTCATGTT+GGG + Chr2:33409537-33409556 MsG0280008524.01.T01:CDS 45.0%
CACCCTTTATGATGAATGGC+AGG + Chr2:33410950-33410969 MsG0280008524.01.T01:intron 45.0%
CATACCTCACAACAGTCAGA+AGG + Chr2:33405786-33405805 MsG0280008524.01.T01:CDS 45.0%
CCACTTATCGGGATAAAGCT+TGG + Chr2:33406894-33406913 MsG0280008524.01.T01:intron 45.0%
CGAGAATAGTCAACTTGTCC+AGG + Chr2:33407463-33407482 MsG0280008524.01.T01:CDS 45.0%
CTCAGACACAGAGACAGAAA+CGG - Chr2:33410398-33410417 None:intergenic 45.0%
GAATTCCTCCTGTCACAACA+GGG - Chr2:33409297-33409316 None:intergenic 45.0%
GAGAACATCAGAGAGAGTTG+GGG + Chr2:33406670-33406689 MsG0280008524.01.T01:intron 45.0%
GCTCATTTGGTTGTGATAGG+CGG + Chr2:33410533-33410552 MsG0280008524.01.T01:CDS 45.0%
GCTTGGACCAAAAATTCTCG+GGG + Chr2:33405819-33405838 MsG0280008524.01.T01:CDS 45.0%
GGACCAACTTCAATGTTAGG+AGG - Chr2:33405847-33405866 None:intergenic 45.0%
GTAGTACATCCAGCCATACA+TGG + Chr2:33405707-33405726 MsG0280008524.01.T01:CDS 45.0%
GTGTTAGCGTTGTAGCATAG+AGG + Chr2:33408244-33408263 MsG0280008524.01.T01:intron 45.0%
TACCGCTGCCTAGTTATGTT+AGG + Chr2:33408667-33408686 MsG0280008524.01.T01:CDS 45.0%
TAGCATTCAGAACGGCATCA+GGG - Chr2:33409394-33409413 None:intergenic 45.0%
TATCAAACGACGCCACTAAG+TGG - Chr2:33410005-33410024 None:intergenic 45.0%
TATTCGAGAGCCTCACATTG+TGG + Chr2:33408024-33408043 MsG0280008524.01.T01:intron 45.0%
TCAAGAGGAGGCTTTCATGT+TGG + Chr2:33409536-33409555 MsG0280008524.01.T01:CDS 45.0%
TGGGCTCATTTGGTTGTGAT+AGG + Chr2:33410530-33410549 MsG0280008524.01.T01:CDS 45.0%
TTAACCTGTGAAGCCCATGT+AGG - Chr2:33407590-33407609 None:intergenic 45.0%
TTAGCATTCAGAACGGCATC+AGG - Chr2:33409395-33409414 None:intergenic 45.0%
! AAATAAGCGTAGTGGAGACG+AGG + Chr2:33406598-33406617 MsG0280008524.01.T01:intron 45.0%
! AAATCGGACGAGGTATTTGG+TGG + Chr2:33407056-33407075 MsG0280008524.01.T01:CDS 45.0%
! AATACGAGTTTGCTCAGAGG+TGG + Chr2:33409191-33409210 MsG0280008524.01.T01:intron 45.0%
! CCAAGCTTTATCCCGATAAG+TGG - Chr2:33406897-33406916 None:intergenic 45.0%
! CGTTCTGAATGCTAAACGTC+TGG + Chr2:33409400-33409419 MsG0280008524.01.T01:CDS 45.0%
! GTTAGGCGTTGCTAGTATTC+AGG + Chr2:33408684-33408703 MsG0280008524.01.T01:CDS 45.0%
! TCCAATACGAGTTTGCTCAG+AGG + Chr2:33409188-33409207 MsG0280008524.01.T01:CDS 45.0%
! TTTTTCCCTGTTGTGACAGG+AGG + Chr2:33409289-33409308 MsG0280008524.01.T01:intron 45.0%
!! ATTGACTCGACCACAATGTG+AGG - Chr2:33408037-33408056 None:intergenic 45.0%
!! CTGGCTTTTCTACAGATACG+GGG + Chr2:33407021-33407040 MsG0280008524.01.T01:intron 45.0%
!! GTTGGAAAGCATCCCATGTA+TGG - Chr2:33405723-33405742 None:intergenic 45.0%
!! TAGCCATGTACATTGGCTCT+AGG - Chr2:33411094-33411113 None:intergenic 45.0%
!!! GATCTTTTTCGACTAGGTGC+TGG - Chr2:33408835-33408854 None:intergenic 45.0%
!!! GGTTCGGATCTTTTTCGACT+AGG - Chr2:33408841-33408860 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTCATTAA+TGG + Chr2:33408593-33408612 MsG0280008524.01.T01:intron 5.0%
ACTGTGGTATGTGTGGTGAG+TGG + Chr2:33410510-33410529 MsG0280008524.01.T01:CDS 50.0%
AGATCAGCTTCAGTAGCCTG+TGG + Chr2:33407533-33407552 MsG0280008524.01.T01:CDS 50.0%
AGGTTGGGCATGTAGAGAGA+AGG + Chr2:33406731-33406750 MsG0280008524.01.T01:intron 50.0%
CAGGACTACGCGAAAACTGA+TGG + Chr2:33410969-33410988 MsG0280008524.01.T01:intron 50.0%
CATACTCGCCTCATTCCACA+AGG + Chr2:33409353-33409372 MsG0280008524.01.T01:CDS 50.0%
CGCCTAACATAACTAGGCAG+CGG - Chr2:33408672-33408691 None:intergenic 50.0%
CGTGGATATATCACAGCGCA+TGG - Chr2:33407256-33407275 None:intergenic 50.0%
CTGTGGTATGTGTGGTGAGT+GGG + Chr2:33410511-33410530 MsG0280008524.01.T01:CDS 50.0%
GATCTTCGAGGCTCGTATGA+AGG - Chr2:33407518-33407537 None:intergenic 50.0%
GCTACTGAAGCTGATCTTCG+AGG - Chr2:33407530-33407549 None:intergenic 50.0%
GCTGTAGTGCTATAGCACAG+AGG + Chr2:33408151-33408170 MsG0280008524.01.T01:intron 50.0%
GGAATTCCTCCTGTCACAAC+AGG - Chr2:33409298-33409317 None:intergenic 50.0%
GGAGGCTTTCATGTTGGGAA+TGG + Chr2:33409542-33409561 MsG0280008524.01.T01:CDS 50.0%
GTGACAGGAGGAATTCCTGA+AGG + Chr2:33409301-33409320 MsG0280008524.01.T01:intron 50.0%
GTTCATGGCTAGGAATTGCC+TGG - Chr2:33407484-33407503 None:intergenic 50.0%
TCCATGTGAAGCAGACACGA+AGG + Chr2:33405864-33405883 MsG0280008524.01.T01:CDS 50.0%
TCCTTCGTGTCTGCTTCACA+TGG - Chr2:33405868-33405887 None:intergenic 50.0%
TGAAGCAGACACGAAGGAAG+AGG + Chr2:33405870-33405889 MsG0280008524.01.T01:CDS 50.0%
TGCGTGAGAATGTTGCTGCT+TGG - Chr2:33407224-33407243 None:intergenic 50.0%
TGGAGACGAGGATGTTACGT+TGG + Chr2:33406610-33406629 MsG0280008524.01.T01:intron 50.0%
TGGGTGAACTGTGGTATGTG+TGG + Chr2:33410503-33410522 MsG0280008524.01.T01:CDS 50.0%
TGTTCCTACATGGGCTTCAC+AGG + Chr2:33407583-33407602 MsG0280008524.01.T01:CDS 50.0%
TTGTGGATTTCCCTGCACAG+TGG + Chr2:33405960-33405979 MsG0280008524.01.T01:intron 50.0%
TTTGGTTGTGATAGGCGGCA+AGG + Chr2:33410538-33410557 MsG0280008524.01.T01:CDS 50.0%
! AATGTTGCTGCTTGGAGAGG+AGG - Chr2:33407216-33407235 None:intergenic 50.0%
! AGCTTTTGGCGATGAGACTG+AGG - Chr2:33408967-33408986 None:intergenic 50.0%
! ATGTAGCCGACTCCACTTAG+TGG + Chr2:33409990-33410009 MsG0280008524.01.T01:intron 50.0%
! GAGAATGTTGCTGCTTGGAG+AGG - Chr2:33407219-33407238 None:intergenic 50.0%
! GAGGCATCAACCAACTAGGA+TGG - Chr2:33408813-33408832 None:intergenic 50.0%
! GCAAGGACTCGGAGCATTTA+AGG + Chr2:33410555-33410574 MsG0280008524.01.T01:CDS 50.0%
! GCTTTTGGCGATGAGACTGA+GGG - Chr2:33408966-33408985 None:intergenic 50.0%
! GGAGGTTCCCCGAGAATTTT+TGG - Chr2:33405829-33405848 None:intergenic 50.0%
! TTGAAGTGTCTGCACCTCCT+GGG - Chr2:33408388-33408407 None:intergenic 50.0%
! TTTGAAGTGTCTGCACCTCC+TGG - Chr2:33408389-33408408 None:intergenic 50.0%
!! GAAAGCATCCCATGTATGGC+TGG - Chr2:33405719-33405738 None:intergenic 50.0%
!!! CTTTTTCGACTAGGTGCTGG+AGG - Chr2:33408832-33408851 None:intergenic 50.0%
AACTCAGCAAGGCCACCTTG+TGG - Chr2:33409371-33409390 None:intergenic 55.0%
ACGACGCCACTAAGTGGAGT+CGG - Chr2:33409999-33410018 None:intergenic 55.0%
ACTCGCCTCATTCCACAAGG+TGG + Chr2:33409356-33409375 MsG0280008524.01.T01:CDS 55.0%
AGCAACATTCTCACGCAGCG+TGG + Chr2:33407227-33407246 MsG0280008524.01.T01:CDS 55.0%
AGGCAGCGGTACGACACATT+AGG - Chr2:33408658-33408677 None:intergenic 55.0%
ATCCAAGCCTACCACTGTGC+AGG - Chr2:33405974-33405993 None:intergenic 55.0%
CAAGGCCACCTTGTGGAATG+AGG - Chr2:33409364-33409383 None:intergenic 55.0%
CACAACAGTCAGAAGGGCAG+CGG + Chr2:33405793-33405812 MsG0280008524.01.T01:CDS 55.0%
CTGCCCTTCTGACTGTTGTG+AGG - Chr2:33405793-33405812 None:intergenic 55.0%
GGATTTCCCTGCACAGTGGT+AGG + Chr2:33405964-33405983 MsG0280008524.01.T01:intron 55.0%
GTCAACAACAGTAGCGCAGC+AGG + Chr2:33410476-33410495 MsG0280008524.01.T01:intron 55.0%
TCCAAGCCTACCACTGTGCA+GGG - Chr2:33405973-33405992 None:intergenic 55.0%
TCTAGGTAGAGGGGAATGCC+TGG - Chr2:33409757-33409776 None:intergenic 55.0%
TGGCGATGAGACTGAGGGAT+TGG - Chr2:33408961-33408980 None:intergenic 55.0%
TGTGATAGGCGGCAAGGACT+CGG + Chr2:33410544-33410563 MsG0280008524.01.T01:CDS 55.0%
! CTACGCGAAAACTGATGGGC+TGG + Chr2:33410974-33410993 MsG0280008524.01.T01:intron 55.0%
! GTGTGGTGAGTGGGCTCATT+TGG + Chr2:33410520-33410539 MsG0280008524.01.T01:CDS 55.0%
!! GCTGGAGGCATCAACCAACT+AGG - Chr2:33408817-33408836 None:intergenic 55.0%
ACAGTAGCGCAGCAGGTGAC+TGG + Chr2:33410483-33410502 MsG0280008524.01.T01:intron 60.0%
CAGAAGGGCAGCGGTAAGCT+TGG + Chr2:33405802-33405821 MsG0280008524.01.T01:CDS 60.0%
CAGTAGCGCAGCAGGTGACT+GGG + Chr2:33410484-33410503 MsG0280008524.01.T01:intron 60.0%
CGGCATCAGGGAACTCAGCA+AGG - Chr2:33409382-33409401 None:intergenic 60.0%
GCAGGTGACTGGGTGAACTG+TGG + Chr2:33410494-33410513 MsG0280008524.01.T01:CDS 60.0%
GTTCTGTAGGGTGCACACCC+AGG + Chr2:33408368-33408387 MsG0280008524.01.T01:intron 60.0%
TCCCTGCACAGTGGTAGGCT+TGG + Chr2:33405969-33405988 MsG0280008524.01.T01:intron 60.0%
! GTTGCTGCTTGGAGAGGAGG+TGG - Chr2:33407213-33407232 None:intergenic 60.0%
CTGTAGGGTGCACACCCAGG+AGG + Chr2:33408371-33408390 MsG0280008524.01.T01:intron 65.0%
GCTGCTTGGAGAGGAGGTGG+TGG - Chr2:33407210-33407229 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 33405700 33411175 33405700 ID=MsG0280008524.01;Name=MsG0280008524.01
Chr2 mRNA 33405700 33411175 33405700 ID=MsG0280008524.01.T01;Parent=MsG0280008524.01;Name=MsG0280008524.01.T01;_AED=0.49;_eAED=0.53;_QI=0|0.66|0.7|1|0.88|1|10|0|572
Chr2 exon 33405700 33405912 33405700 ID=MsG0280008524.01.T01:exon:22831;Parent=MsG0280008524.01.T01
Chr2 exon 33407036 33407118 33407036 ID=MsG0280008524.01.T01:exon:22832;Parent=MsG0280008524.01.T01
Chr2 exon 33407203 33407344 33407203 ID=MsG0280008524.01.T01:exon:22833;Parent=MsG0280008524.01.T01
Chr2 exon 33407431 33407604 33407431 ID=MsG0280008524.01.T01:exon:22834;Parent=MsG0280008524.01.T01
Chr2 exon 33408637 33409209 33408637 ID=MsG0280008524.01.T01:exon:22835;Parent=MsG0280008524.01.T01
Chr2 exon 33409308 33409445 33409308 ID=MsG0280008524.01.T01:exon:22836;Parent=MsG0280008524.01.T01
Chr2 exon 33409530 33409628 33409530 ID=MsG0280008524.01.T01:exon:22837;Parent=MsG0280008524.01.T01
Chr2 exon 33410290 33410390 33410290 ID=MsG0280008524.01.T01:exon:22838;Parent=MsG0280008524.01.T01
Chr2 exon 33410487 33410576 33410487 ID=MsG0280008524.01.T01:exon:22839;Parent=MsG0280008524.01.T01
Chr2 exon 33411070 33411175 33411070 ID=MsG0280008524.01.T01:exon:22840;Parent=MsG0280008524.01.T01
Chr2 CDS 33405700 33405912 33405700 ID=MsG0280008524.01.T01:cds;Parent=MsG0280008524.01.T01
Chr2 CDS 33407036 33407118 33407036 ID=MsG0280008524.01.T01:cds;Parent=MsG0280008524.01.T01
Chr2 CDS 33407203 33407344 33407203 ID=MsG0280008524.01.T01:cds;Parent=MsG0280008524.01.T01
Chr2 CDS 33407431 33407604 33407431 ID=MsG0280008524.01.T01:cds;Parent=MsG0280008524.01.T01
Chr2 CDS 33408637 33409209 33408637 ID=MsG0280008524.01.T01:cds;Parent=MsG0280008524.01.T01
Chr2 CDS 33409308 33409445 33409308 ID=MsG0280008524.01.T01:cds;Parent=MsG0280008524.01.T01
Chr2 CDS 33409530 33409628 33409530 ID=MsG0280008524.01.T01:cds;Parent=MsG0280008524.01.T01
Chr2 CDS 33410290 33410390 33410290 ID=MsG0280008524.01.T01:cds;Parent=MsG0280008524.01.T01
Chr2 CDS 33410487 33410576 33410487 ID=MsG0280008524.01.T01:cds;Parent=MsG0280008524.01.T01
Chr2 CDS 33411070 33411175 33411070 ID=MsG0280008524.01.T01:cds;Parent=MsG0280008524.01.T01
Gene Sequence

>MsG0280008524.01.T01

ATGCATTGTAGTACATCCAGCCATACATGGGATGCTTTCCAACTTGCTCAGTCATCTTTTAGACTATACTGTGTGCAAAACGAGGTCATACCTCACAACAGTCAGAAGGGCAGCGGTAAGCTTGGACCAAAAATTCTCGGGGAACCTCCTAACATTGAAGTTGGTCCATGTGAAGCAGACACGAAGGAAGAGGAAGAAGATTCCCTGAGACTAATACGGGGATGTAAACTTCAAAATCGGACGAGGTATTTGGTGGTTTTGAGAGTTCATACTCGTGTTTTCCGATGTTTTATTCGTGCTCCACCACCTCCTCTCCAAGCAGCAACATTCTCACGCAGCGTGGTGACCATGCGCTGTGATATATCCACGTCTAGTTCTGCTCATATATCACTTTTGGTGTCTGGTAGTGCAGACGCTTGTTTCAATGATCAGGCACGGCTTTTGGAGAATCATATTAAGAAAGAGCTCACCGAGAATAGTCAACTTGTCCAGGCAATTCCTAGCCATGAACAAAATAAACTACCTTCATACGAGCCTCGAAGATCAGCTTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGTGTTCCTACATGGGCTTCACAGGTTCTTAGACAACTTGCACCTAATGTGTCGTACCGCTGCCTAGTTATGTTAGGCGTTGCTAGTATTCAGGGATTATCAGTTGCATCTTTTACTAAAGATGATGCAGAACGTCTTCTTTTCTTTTGTAATCGGAAGGAGAAAGATAACGGCTCCAAAGATATTGTTTTCTCTAGCCATCCTAGTTGGTTGATGCCTCCAGCACCTAGTCGAAAAAGATCCGAACCAGAATCATGCTCTAGAGTTAAATCTATCAATGCTAGTGGCGTGAAAGTTGAAGATAATGGCAGTGATAGGCAGAAATTAAGTTTTGCTGCAATGAGGCCAATCCCTCAGTCTCATCGCCAAAAGCTTCTCCCTTTTTCAGGATATTTTGAGGGAGAAAAATATGATGGAGACCGTGGAAAATCAAATCAGCCTCATGTTCCAATTAAGCACAATGGTTTAGGTCCTCGTTCAGTTACAAACAGAAAATCTGTGTCAAACTCGTTTCAAGCTCACCAGATAATATCTTTGAATCCACTACCAATGAAAAAACATGGCTGCGACAGAGCTCCAATACGAGTTTGCTCAGAGGAGGAATTCCTGAAGGATGTAATGCAATTTCTGGTTCTTCGAGGGCATACTCGCCTCATTCCACAAGGTGGCCTTGCTGAGTTCCCTGATGCCGTTCTGAATGCTAAACGTCTGGATCTTTTTAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGAGCAATCACACTCTGACACATAGAATGACAGGTGTTGGCAATACACTCAAAAGACATTACGAAACTTATCTTTTAGAATATGAATTAGCTCATGATGATGTAGATGGCGAATGCTGCTTATTGTGTCACAGTAGCGCAGCAGGTGACTGGGTGAACTGTGGTATGTGTGGTGAGTGGGCTCATTTGGTTGTGATAGGCGGCAAGGACTCGGAGCATTTAAGGTTAAACAATGCTGTTTCTTTCCTAGAGCCAATGTACATGGCTAGTGTTAACAAATTTTATTCTGTTTCTGTGCTTGATCCTCAATTGGTAAAGGTAGGTTTGTAG
Protein sequence

>MsG0280008524.01.T01

MHCSTSSHTWDAFQLAQSSFRLYCVQNEVIPHNSQKGSGKLGPKILGEPPNIEVGPCEADTKEEEEDSLRLIRGCKLQNRTRYLVVLRVHTRVFRCFIRAPPPPLQAATFSRSVVTMRCDISTSSSAHISLLVSGSADACFNDQARLLENHIKKELTENSQLVQAIPSHEQNKLPSYEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNVSYRCLVMLGVASIQGLSVASFTKDDAERLLFFCNRKEKDNGSKDIVFSSHPSWLMPPAPSRKRSEPESCSRVKSINASGVKVEDNGSDRQKLSFAAMRPIPQSHRQKLLPFSGYFEGEKYDGDRGKSNQPHVPIKHNGLGPRSVTNRKSVSNSFQAHQIISLNPLPMKKHGCDRAPIRVCSEEEFLKDVMQFLVLRGHTRLIPQGGLAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGMCGEWAHLVVIGGKDSEHLRLNNAVSFLEPMYMASVNKFYSVSVLDPQLVKVGL*