AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009166.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009166.01.T01 MTR_0011s0330 100.000 127 0 0 3 129 2 128 9.47e-91 258
MsG0280009166.01.T01 MTR_4g114330 97.638 127 3 0 3 129 2 128 4.23e-88 252
MsG0280009166.01.T01 MTR_4g112780 34.821 112 72 1 9 119 21 132 1.13e-16 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009166.01.T01 AT4G22380 93.701 127 8 0 3 129 2 128 2.27e-76 222
MsG0280009166.01.T01 AT5G20160 92.913 127 9 0 3 129 2 128 1.33e-75 220
MsG0280009166.01.T01 AT4G12600 91.339 127 11 0 3 129 2 128 2.31e-73 214
MsG0280009166.01.T01 AT5G20160 74.214 159 9 1 3 129 2 160 5.90e-69 204
MsG0280009166.01.T01 AT4G12600 56.044 182 25 2 3 129 2 183 1.74e-48 154
MsG0280009166.01.T01 AT5G20160 64.486 107 6 1 3 77 2 108 4.87e-30 104
MsG0280009166.01.T01 AT5G08180 36.641 131 74 1 6 127 21 151 3.51e-23 88.6
MsG0280009166.01.T01 AT5G08180 36.641 131 74 1 6 127 21 151 3.51e-23 88.6

Find 35 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTTGTGTACACTATAAA+TGG 0.179279 2:+46787712 MsG0280009166.01.T01:three_prime_UTR
ATGGATTAATGTTATTCTAT+TGG 0.230931 2:+46787731 MsG0280009166.01.T01:three_prime_UTR
TCAGCCAAAGGGTAAGCTTT+TGG 0.274630 2:-46784541 None:intergenic
TAATTACAAGCAACTCAAAA+AGG 0.282256 2:+46784609 MsG0280009166.01.T01:CDS
TGGATTAATGTTATTCTATT+GGG 0.287540 2:+46787732 MsG0280009166.01.T01:three_prime_UTR
TTGATCTGAAAGATTGATTT+CGG 0.342588 2:+46787521 MsG0280009166.01.T01:exon
TCCTTTACTCGCTGAGGATA+AGG 0.365424 2:+46784885 MsG0280009166.01.T01:CDS
AATCAAAAGCACACCTTCAT+TGG 0.389057 2:-46784635 None:intergenic
ACAACTTACGATAACGATAA+TGG 0.396702 2:+46784567 MsG0280009166.01.T01:CDS
AAAGATTGATTTCGGTATGA+TGG 0.399664 2:+46787529 MsG0280009166.01.T01:exon
TTTAAGTTGACTTCCCTCAT+TGG 0.429117 2:-46787366 None:intergenic
CATTTCTGAGTTTGTTGTGA+TGG 0.445083 2:+46784825 MsG0280009166.01.T01:CDS
TTTGATGGGACAAATACATA+AGG 0.470260 2:-46787284 None:intergenic
ATATTTATATCCACTGTTTG+AGG 0.472855 2:+46787646 MsG0280009166.01.T01:three_prime_UTR
GAATCCAAAAGCTTACCCTT+TGG 0.476923 2:+46784537 MsG0280009166.01.T01:CDS
CGTCCAGTCAAAGCCTCAAA+AGG 0.482572 2:-46787577 None:intergenic
GTCCCATCAAAACAAGCACT+TGG 0.490949 2:+46787296 MsG0280009166.01.T01:CDS
AAGATTGATTTCGGTATGAT+GGG 0.511888 2:+46787530 MsG0280009166.01.T01:three_prime_UTR
CACTTTCAATCCTCAAACAG+TGG 0.519537 2:-46787656 None:intergenic
GTCACAGAACATGCAATCAC+TGG 0.528661 2:-46787341 None:intergenic
ATCTCAAATACAGCAACTAA+AGG 0.530724 2:+46787388 MsG0280009166.01.T01:CDS
ACCTTATCCTCAGCGAGTAA+AGG 0.534236 2:-46784886 None:intergenic
CAGAACATGCAATCACTGGC+CGG 0.535766 2:-46787337 None:intergenic
GAGTTGTGTTCAACTCGAAA+AGG 0.541959 2:+46787599 MsG0280009166.01.T01:three_prime_UTR
GGCGAGCATGTGGTGTGACC+CGG 0.542727 2:+46787318 MsG0280009166.01.T01:CDS
TCATCTTCCTTTACTCGCTG+AGG 0.553114 2:+46784879 MsG0280009166.01.T01:CDS
CAAGCACTTGGGCGAGCATG+TGG 0.563020 2:+46787308 MsG0280009166.01.T01:CDS
TAAGTTGTGCATCAGCCAAA+GGG 0.569151 2:-46784552 None:intergenic
AGAACATGCAATCACTGGCC+GGG 0.572135 2:-46787336 None:intergenic
GTAAGTTGTGCATCAGCCAA+AGG 0.580950 2:-46784553 None:intergenic
TCCCATCAAAACAAGCACTT+GGG 0.598699 2:+46787297 MsG0280009166.01.T01:CDS
TGTTCTGTGACAACCAATGA+GGG 0.643609 2:+46787353 MsG0280009166.01.T01:CDS
AGATGAAGAAGAATCTCAAG+TGG 0.658274 2:-46784862 None:intergenic
ATGTTCTGTGACAACCAATG+AGG 0.691643 2:+46787352 MsG0280009166.01.T01:CDS
GCTACAAAGACACTTAACAG+AGG 0.744755 2:+46784802 MsG0280009166.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAAAATAAAAAAAT+AGG - Chr2:46784935-46784954 None:intergenic 0.0%
!!! TTATTATTTTTTTTTTTATT+TGG - Chr2:46785762-46785781 None:intergenic 0.0%
!!! TTTTATTTTTTATTTTTTAT+GGG + Chr2:46785035-46785054 MsG0280009166.01.T01:intron 0.0%
!! AAAATATACAAAAAAAACAA+AGG - Chr2:46786265-46786284 None:intergenic 10.0%
!!! GTATATTTTAATTGAAAAAT+TGG + Chr2:46786276-46786295 MsG0280009166.01.T01:intron 10.0%
!!! TAATTGAATTATGAATATTT+TGG + Chr2:46785529-46785548 MsG0280009166.01.T01:intron 10.0%
!! ATTACTTCTTATCAAATAAT+CGG + Chr2:46786797-46786816 MsG0280009166.01.T01:intron 15.0%
!! GTGTAATATAAAATTGATAT+CGG - Chr2:46786335-46786354 None:intergenic 15.0%
!! TGAAAATTCAAATAATTACA+TGG - Chr2:46787257-46787276 None:intergenic 15.0%
!! TTATTTGATAAGAAGTAATT+TGG - Chr2:46786796-46786815 None:intergenic 15.0%
!!! ATTTTTATTTTCAGTTTCTA+TGG + Chr2:46784678-46784697 MsG0280009166.01.T01:intron 15.0%
!!! TTAAATAAAAGTACATAACT+TGG - Chr2:46785512-46785531 None:intergenic 15.0%
!!! TTTAATGGAAATTGTTTTAT+TGG + Chr2:46786700-46786719 MsG0280009166.01.T01:intron 15.0%
!! AAAAAGAAAAAGTGGTATTA+GGG + Chr2:46784703-46784722 MsG0280009166.01.T01:intron 20.0%
!! ATTATAACAGCTAATAAAGT+TGG - Chr2:46787452-46787471 None:intergenic 20.0%
!! ATTTGAGGGATTTAAAAATT+AGG + Chr2:46786404-46786423 MsG0280009166.01.T01:intron 20.0%
!! GATTATTAATCACATTGTAA+TGG - Chr2:46785693-46785712 None:intergenic 20.0%
!! TAAAAAGAAAAAGTGGTATT+AGG + Chr2:46784702-46784721 MsG0280009166.01.T01:intron 20.0%
!! TGGATTAATGTTATTCTATT+GGG + Chr2:46787732-46787751 MsG0280009166.01.T01:three_prime_UTR 20.0%
!! TTAATTTATGACAGTTGAAA+AGG + Chr2:46787224-46787243 MsG0280009166.01.T01:intron 20.0%
!!! AAATTGTTTTATTGGTAAGT+TGG + Chr2:46786708-46786727 MsG0280009166.01.T01:intron 20.0%
!!! ATGGATTAATGTTATTCTAT+TGG + Chr2:46787731-46787750 MsG0280009166.01.T01:three_prime_UTR 20.0%
!!! TCAATGTCTTTTTAAAATTG+TGG + Chr2:46787009-46787028 MsG0280009166.01.T01:intron 20.0%
!!! TCATTGAATTCTGATTTTTT+TGG - Chr2:46785630-46785649 None:intergenic 20.0%
! AAACTTGTGTACACTATAAA+TGG + Chr2:46787712-46787731 MsG0280009166.01.T01:three_prime_UTR 25.0%
! AATAGGCAATTAACATTTGT+TGG - Chr2:46784918-46784937 None:intergenic 25.0%
! AATTACAAGCAACTCAAAAA+GGG + Chr2:46784610-46784629 MsG0280009166.01.T01:CDS 25.0%
! ATATTTATATCCACTGTTTG+AGG + Chr2:46787646-46787665 MsG0280009166.01.T01:three_prime_UTR 25.0%
! ATCATAGAAAAAGACTACTA+GGG - Chr2:46785840-46785859 None:intergenic 25.0%
! ATTATAGGTATAAGACAATG+TGG - Chr2:46786975-46786994 None:intergenic 25.0%
! CAAAGTCTAAACAAATCAAA+GGG - Chr2:46785420-46785439 None:intergenic 25.0%
! CTATGGTTAAAAAGAAAAAG+TGG + Chr2:46784695-46784714 MsG0280009166.01.T01:intron 25.0%
! GAATAATATCAAGCAAAACA+TGG - Chr2:46787420-46787439 None:intergenic 25.0%
! TAATTACAAGCAACTCAAAA+AGG + Chr2:46784609-46784628 MsG0280009166.01.T01:CDS 25.0%
! TAGTTTAGATTCATTTCTTG+TGG + Chr2:46786463-46786482 MsG0280009166.01.T01:intron 25.0%
! TATGTATGTTAATTTCATCC+TGG + Chr2:46787097-46787116 MsG0280009166.01.T01:intron 25.0%
! TCAAAGTCTAAACAAATCAA+AGG - Chr2:46785421-46785440 None:intergenic 25.0%
! TGATAAGAAGTAATTTGGTA+GGG - Chr2:46786791-46786810 None:intergenic 25.0%
! TTGATAAGAAGTAATTTGGT+AGG - Chr2:46786792-46786811 None:intergenic 25.0%
! TTTCTATTCATTCATGTTCT+TGG + Chr2:46787197-46787216 MsG0280009166.01.T01:intron 25.0%
!! ATTTGGCATATATTGGTAAT+AGG - Chr2:46787129-46787148 None:intergenic 25.0%
!! CTTTTTATTAAGTTTCGTTG+TGG + Chr2:46786758-46786777 MsG0280009166.01.T01:intron 25.0%
!! TTGATCTGAAAGATTGATTT+CGG + Chr2:46787521-46787540 MsG0280009166.01.T01:exon 25.0%
!!! AAATATGTCTGTGTTTTTGA+AGG + Chr2:46784952-46784971 MsG0280009166.01.T01:intron 25.0%
!!! AATATGTCTGTGTTTTTGAA+GGG + Chr2:46784953-46784972 MsG0280009166.01.T01:intron 25.0%
!!! TTGAAAGTGCAATTTTAAGT+TGG + Chr2:46787670-46787689 MsG0280009166.01.T01:three_prime_UTR 25.0%
AATGTGGATAGAGATTTAGA+AGG + Chr2:46785161-46785180 MsG0280009166.01.T01:intron 30.0%
ACAACTTACGATAACGATAA+TGG + Chr2:46784567-46784586 MsG0280009166.01.T01:CDS 30.0%
ACCAAAAGAACCAAAGTTAT+AGG - Chr2:46786307-46786326 None:intergenic 30.0%
AGCAGAAACAACAAAAACAA+GGG - Chr2:46786237-46786256 None:intergenic 30.0%
AGGCATTACAAATTTCAACA+TGG - Chr2:46786651-46786670 None:intergenic 30.0%
AGTCTGGAAAAAACAAAACA+GGG - Chr2:46787164-46787183 None:intergenic 30.0%
ATCTCAAATACAGCAACTAA+AGG + Chr2:46787388-46787407 MsG0280009166.01.T01:CDS 30.0%
ATGATAACATGTTTGAACAG+AGG - Chr2:46786570-46786589 None:intergenic 30.0%
CATCATAGAAAAAGACTACT+AGG - Chr2:46785841-46785860 None:intergenic 30.0%
CTAGTGTTAGATTTCTACAT+TGG - Chr2:46785970-46785989 None:intergenic 30.0%
GTGTGATCGTTGAAAATTTA+AGG - Chr2:46786946-46786965 None:intergenic 30.0%
TAGTCTGGAAAAAACAAAAC+AGG - Chr2:46787165-46787184 None:intergenic 30.0%
TCAGTCAATTTGGCATATAT+TGG - Chr2:46787136-46787155 None:intergenic 30.0%
TGAATGAATAGAAATAGCTG+TGG - Chr2:46787191-46787210 None:intergenic 30.0%
TGATGTCCATACAAATCAAA+AGG + Chr2:46785875-46785894 MsG0280009166.01.T01:intron 30.0%
TGTTATAATGCCAACACATT+TGG + Chr2:46787463-46787482 MsG0280009166.01.T01:intron 30.0%
TTATCAAATAATCGGTGTAG+CGG + Chr2:46786805-46786824 MsG0280009166.01.T01:intron 30.0%
TTTGATGGGACAAATACATA+AGG - Chr2:46787287-46787306 None:intergenic 30.0%
! AAAGATTGATTTCGGTATGA+TGG + Chr2:46787529-46787548 MsG0280009166.01.T01:exon 30.0%
! AAGATTGATTTCGGTATGAT+GGG + Chr2:46787530-46787549 MsG0280009166.01.T01:three_prime_UTR 30.0%
!! TAGAAAGTATTTATGAGCCT+GGG + Chr2:46785184-46785203 MsG0280009166.01.T01:intron 30.0%
ACTATGGAAAGACACTACTA+GGG + Chr2:46785454-46785473 MsG0280009166.01.T01:intron 35.0%
AGAAGTAATTTGGTAGGGTA+AGG - Chr2:46786786-46786805 None:intergenic 35.0%
AGATGAAGAAGAATCTCAAG+TGG - Chr2:46784865-46784884 None:intergenic 35.0%
AGCAGCAATAACAGTAACAA+TGG - Chr2:46785007-46785026 None:intergenic 35.0%
ATATCTCATCAACACGTAAG+TGG - Chr2:46785567-46785586 None:intergenic 35.0%
ATTGGTAGAGCCTATAACTT+TGG + Chr2:46786294-46786313 MsG0280009166.01.T01:intron 35.0%
CAGCAGAAACAACAAAAACA+AGG - Chr2:46786238-46786257 None:intergenic 35.0%
GATTCATTTCTTGTGGAAAG+TGG + Chr2:46786470-46786489 MsG0280009166.01.T01:intron 35.0%
GTCTGGAAAAAACAAAACAG+GGG - Chr2:46787163-46787182 None:intergenic 35.0%
TCAAGAATGTCCAAATGTGT+TGG - Chr2:46787476-46787495 None:intergenic 35.0%
TCAAGTAAGTATGAGTTCAG+AGG + Chr2:46785783-46785802 MsG0280009166.01.T01:intron 35.0%
TCTGCTGTTAATGCATTTGA+GGG + Chr2:46786390-46786409 MsG0280009166.01.T01:intron 35.0%
TGACGTAGACATAATCACTA+TGG + Chr2:46785438-46785457 MsG0280009166.01.T01:intron 35.0%
TGATTTATGACTAGTGCAAC+TGG + Chr2:46784733-46784752 MsG0280009166.01.T01:intron 35.0%
TGGAGATTCAGAAGGAAAAA+AGG - Chr2:46786108-46786127 None:intergenic 35.0%
TGTCATGAATGCAATCATGT+TGG - Chr2:46786504-46786523 None:intergenic 35.0%
TGTTAAAGTAATCTGTGCAG+TGG + Chr2:46786735-46786754 MsG0280009166.01.T01:intron 35.0%
TTTGGACATTCTTGATATGC+AGG + Chr2:46787481-46787500 MsG0280009166.01.T01:intron 35.0%
! AATCAAAAGCACACCTTCAT+TGG - Chr2:46784638-46784657 None:intergenic 35.0%
! ATTATTGCGTTGGTCTGTTA+GGG + Chr2:46785335-46785354 MsG0280009166.01.T01:intron 35.0%
! CTTTGGGAGGGATTATTTAA+TGG + Chr2:46786685-46786704 MsG0280009166.01.T01:intron 35.0%
! GGCATATATTGGTAATAGGT+CGG - Chr2:46787125-46787144 None:intergenic 35.0%
! TTATCATTTGACTTCCCAAG+CGG + Chr2:46786583-46786602 MsG0280009166.01.T01:intron 35.0%
!! AAAGCTTGTTACTTCAACAC+TGG - Chr2:46786196-46786215 None:intergenic 35.0%
!! AAGCTTGTTACTTCAACACT+GGG - Chr2:46786195-46786214 None:intergenic 35.0%
!! CATTTCTGAGTTTGTTGTGA+TGG + Chr2:46784825-46784844 MsG0280009166.01.T01:CDS 35.0%
!! GTAGAAAGTATTTATGAGCC+TGG + Chr2:46785183-46785202 MsG0280009166.01.T01:intron 35.0%
!! TTTAAGTTGACTTCCCTCAT+TGG - Chr2:46787369-46787388 None:intergenic 35.0%
!! TTTCTACATTGGTCTTGTAG+TGG - Chr2:46785959-46785978 None:intergenic 35.0%
!!! ACTGGCTAAAAGATTGGTTT+TGG - Chr2:46786887-46786906 None:intergenic 35.0%
!!! CTGGCTAAAAGATTGGTTTT+GGG - Chr2:46786886-46786905 None:intergenic 35.0%
!!! GCCTATAACTTTGGTTCTTT+TGG + Chr2:46786303-46786322 MsG0280009166.01.T01:intron 35.0%
!!! GCTTTTTTTCCTCTCAAACA+TGG + Chr2:46786211-46786230 MsG0280009166.01.T01:intron 35.0%
!!! TGGCTAAAAGATTGGTTTTG+GGG - Chr2:46786885-46786904 None:intergenic 35.0%
AAACTCAAATGCATACCGCT+TGG - Chr2:46786601-46786620 None:intergenic 40.0%
AACTCAAATGCATACCGCTT+GGG - Chr2:46786600-46786619 None:intergenic 40.0%
AATCACTGGTGGAACCAATA+TGG + Chr2:46785257-46785276 MsG0280009166.01.T01:intron 40.0%
ACTAGTGCAACTGGATTGAA+TGG + Chr2:46784742-46784761 MsG0280009166.01.T01:intron 40.0%
ATGTTCTGTGACAACCAATG+AGG + Chr2:46787352-46787371 MsG0280009166.01.T01:CDS 40.0%
CACTATGGAAAGACACTACT+AGG + Chr2:46785453-46785472 MsG0280009166.01.T01:intron 40.0%
CACTGTATCACTAAGCTTCA+CGG - Chr2:46786912-46786931 None:intergenic 40.0%
CACTTTCAATCCTCAAACAG+TGG - Chr2:46787659-46787678 None:intergenic 40.0%
CAGGGGAATATCAGTCAATT+TGG - Chr2:46787146-46787165 None:intergenic 40.0%
CCTAAACCAATTCTCAACCA+TGG - Chr2:46785366-46785385 None:intergenic 40.0%
CCTGCAAAAACCAATAGAAG+CGG + Chr2:46786073-46786092 MsG0280009166.01.T01:intron 40.0%
CGAAAAACCAACAGAAGGAA+TGG - Chr2:46785217-46785236 None:intergenic 40.0%
CTCTGCTGTTAATGCATTTG+AGG + Chr2:46786389-46786408 MsG0280009166.01.T01:intron 40.0%
CTGTCCTCTTAATGCTCTTT+GGG + Chr2:46785392-46785411 MsG0280009166.01.T01:intron 40.0%
CTTCCCACTTTGTGAACTTT+GGG + Chr2:46786669-46786688 MsG0280009166.01.T01:intron 40.0%
GAATCCAAAAGCTTACCCTT+TGG + Chr2:46784537-46784556 MsG0280009166.01.T01:CDS 40.0%
GAGTTGTGTTCAACTCGAAA+AGG + Chr2:46787599-46787618 MsG0280009166.01.T01:three_prime_UTR 40.0%
GCTACAAAGACACTTAACAG+AGG + Chr2:46784802-46784821 MsG0280009166.01.T01:intron 40.0%
GGTAAACCATGGTTGAGAAT+TGG + Chr2:46785357-46785376 MsG0280009166.01.T01:intron 40.0%
GTCTGGTTAGATTATTGCGT+TGG + Chr2:46785325-46785344 MsG0280009166.01.T01:intron 40.0%
GTTTGAACAGAGGTTTCCTT+TGG - Chr2:46786560-46786579 None:intergenic 40.0%
TAAGTTGTGCATCAGCCAAA+GGG - Chr2:46784555-46784574 None:intergenic 40.0%
TCCCATCAAAACAAGCACTT+GGG + Chr2:46787297-46787316 MsG0280009166.01.T01:CDS 40.0%
TCCTTCGAAAAACCAACAGA+AGG - Chr2:46785222-46785241 None:intergenic 40.0%
TGGTGGAACCAATATGGTTT+GGG + Chr2:46785263-46785282 MsG0280009166.01.T01:intron 40.0%
TGTTCTGTGACAACCAATGA+GGG + Chr2:46787353-46787372 MsG0280009166.01.T01:CDS 40.0%
TTGTCCTCTTGATGCTCTTT+GGG - Chr2:46785903-46785922 None:intergenic 40.0%
TTTATGGGGCAATGTTTGAG+AGG + Chr2:46785050-46785069 MsG0280009166.01.T01:intron 40.0%
! CCATGGTTGAGAATTGGTTT+AGG + Chr2:46785363-46785382 MsG0280009166.01.T01:intron 40.0%
! GATTATTGCGTTGGTCTGTT+AGG + Chr2:46785334-46785353 MsG0280009166.01.T01:intron 40.0%
! TTATTGCGTTGGTCTGTTAG+GGG + Chr2:46785336-46785355 MsG0280009166.01.T01:intron 40.0%
! TTGTGAAGTGGCGGAAAAAA+GGG + Chr2:46785120-46785139 MsG0280009166.01.T01:intron 40.0%
!! AAAGAGCATCAAGAGGACAA+CGG + Chr2:46785903-46785922 MsG0280009166.01.T01:intron 40.0%
!! AAAGAGCATTAAGAGGACAG+GGG - Chr2:46785392-46785411 None:intergenic 40.0%
!! AGCTTGTTACTTCAACACTG+GGG - Chr2:46786194-46786213 None:intergenic 40.0%
!! CAAAGAGCATTAAGAGGACA+GGG - Chr2:46785393-46785412 None:intergenic 40.0%
!! TTGGTTTTTCGAAGGACATG+TGG + Chr2:46785226-46785245 MsG0280009166.01.T01:intron 40.0%
!!! TCCTTCTGTTGGTTTTTCGA+AGG + Chr2:46785218-46785237 MsG0280009166.01.T01:intron 40.0%
!!! TGGGCACCTTTTGATTTGTA+TGG - Chr2:46785884-46785903 None:intergenic 40.0%
AAACAAGGGCCATGTTTGAG+AGG - Chr2:46786223-46786242 None:intergenic 45.0%
AAATAGCTGTGGCTGTAGTC+TGG - Chr2:46787180-46787199 None:intergenic 45.0%
AAGAAATTTGCACGCTGGTC+TGG + Chr2:46785308-46785327 MsG0280009166.01.T01:intron 45.0%
AAGGTGGATGGAGATTCAGA+AGG - Chr2:46786116-46786135 None:intergenic 45.0%
ACATGGAGAGGATTGAAAGG+TGG - Chr2:46786132-46786151 None:intergenic 45.0%
ACCTTATCCTCAGCGAGTAA+AGG - Chr2:46784889-46784908 None:intergenic 45.0%
CCAAAGTTCACAAAGTGGGA+AGG - Chr2:46786671-46786690 None:intergenic 45.0%
CCTCCCAAAGTTCACAAAGT+GGG - Chr2:46786675-46786694 None:intergenic 45.0%
CCTGTCCTCTTAATGCTCTT+TGG + Chr2:46785391-46785410 MsG0280009166.01.T01:intron 45.0%
CCTTCCCACTTTGTGAACTT+TGG + Chr2:46786668-46786687 MsG0280009166.01.T01:intron 45.0%
CTGGTGGAACCAATATGGTT+TGG + Chr2:46785262-46785281 MsG0280009166.01.T01:intron 45.0%
GATTTAGCCACCGCTTCTAT+TGG - Chr2:46786086-46786105 None:intergenic 45.0%
GCAAAAACCAATAGAAGCGG+TGG + Chr2:46786076-46786095 MsG0280009166.01.T01:intron 45.0%
GCTATGTTCCACTTGAGTGT+TGG - Chr2:46785732-46785751 None:intergenic 45.0%
GGTACATGGAGAGGATTGAA+AGG - Chr2:46786135-46786154 None:intergenic 45.0%
GGTTTGGGTGACAATGTCAA+GGG - Chr2:46786016-46786035 None:intergenic 45.0%
GTAAGTTGTGCATCAGCCAA+AGG - Chr2:46784556-46784575 None:intergenic 45.0%
GTAGGAAGAAATTTGCACGC+TGG + Chr2:46785303-46785322 MsG0280009166.01.T01:intron 45.0%
GTCACAGAACATGCAATCAC+TGG - Chr2:46787344-46787363 None:intergenic 45.0%
GTCCCATCAAAACAAGCACT+TGG + Chr2:46787296-46787315 MsG0280009166.01.T01:CDS 45.0%
GTTGTCCTCTTGATGCTCTT+TGG - Chr2:46785904-46785923 None:intergenic 45.0%
TCAACACTCCAACACTCAAG+TGG + Chr2:46785721-46785740 MsG0280009166.01.T01:intron 45.0%
TCATCTTCCTTTACTCGCTG+AGG + Chr2:46784879-46784898 MsG0280009166.01.T01:CDS 45.0%
TCCTTTACTCGCTGAGGATA+AGG + Chr2:46784885-46784904 MsG0280009166.01.T01:CDS 45.0%
TCTCTTGCCATTCCTTCTGT+TGG + Chr2:46785207-46785226 MsG0280009166.01.T01:intron 45.0%
TGAACAGAGGTTTCCTTTGG+TGG - Chr2:46786557-46786576 None:intergenic 45.0%
TGTGCGGTCAACTGTAATCT+GGG + Chr2:46787042-46787061 MsG0280009166.01.T01:intron 45.0%
TGTTACCGCCCAAACCATAT+TGG - Chr2:46785274-46785293 None:intergenic 45.0%
TTACTTCAACACTGGGGTGA+TGG - Chr2:46786188-46786207 None:intergenic 45.0%
! ACGGCTACTGGCTAAAAGAT+TGG - Chr2:46786893-46786912 None:intergenic 45.0%
! ATTGGTAATAGGTCGGATCC+AGG - Chr2:46787118-46787137 None:intergenic 45.0%
! CCACTTTGTGAACTTTGGGA+GGG + Chr2:46786673-46786692 MsG0280009166.01.T01:intron 45.0%
! CTTGTGAAGTGGCGGAAAAA+AGG + Chr2:46785119-46785138 MsG0280009166.01.T01:intron 45.0%
! GGTCTTGTAGTGGTAAACCA+TGG - Chr2:46785949-46785968 None:intergenic 45.0%
! TCAGCCAAAGGGTAAGCTTT+TGG - Chr2:46784544-46784563 None:intergenic 45.0%
! TGATGGATCTTGTGAAGTGG+CGG + Chr2:46785111-46785130 MsG0280009166.01.T01:intron 45.0%
! TGCTGAATGCTCTCCTTTTG+AGG + Chr2:46787564-46787583 MsG0280009166.01.T01:three_prime_UTR 45.0%
! TGGAACCAATATGGTTTGGG+CGG + Chr2:46785266-46785285 MsG0280009166.01.T01:intron 45.0%
! TGGTTTGGGTGACAATGTCA+AGG - Chr2:46786017-46786036 None:intergenic 45.0%
! TTGTGGCTAGTGTTACTGTG+CGG + Chr2:46787026-46787045 MsG0280009166.01.T01:intron 45.0%
!! CAGTGATGGATCTTGTGAAG+TGG + Chr2:46785108-46785127 MsG0280009166.01.T01:intron 45.0%
!! CCAAAGAGCATTAAGAGGAC+AGG - Chr2:46785394-46785413 None:intergenic 45.0%
!! CTCAAAAAGGGTGCCAATGA+AGG + Chr2:46784622-46784641 MsG0280009166.01.T01:CDS 45.0%
!! GTTTTTCGAAGGACATGTGG+AGG + Chr2:46785229-46785248 MsG0280009166.01.T01:intron 45.0%
!!! ATTGGTTTTTGCAGGACACG+TGG - Chr2:46786068-46786087 None:intergenic 45.0%
!!! CCGCTTCTATTGGTTTTTGC+AGG - Chr2:46786076-46786095 None:intergenic 45.0%
!!! GCCCAAGTGCTTGTTTTGAT+GGG - Chr2:46787301-46787320 None:intergenic 45.0%
!!! TCTCCTTTTGAGGCTTTGAC+TGG + Chr2:46787574-46787593 MsG0280009166.01.T01:three_prime_UTR 45.0%
!! AAAAATAAAAAATAAAACAA+AGG - Chr2:46785032-46785051 None:intergenic 5.0%
!! AAATTAATGAAATTAATTAT+AGG - Chr2:46786990-46787009 None:intergenic 5.0%
!!! GTTTTATTTTTTATTTTTTA+TGG + Chr2:46785034-46785053 MsG0280009166.01.T01:intron 5.0%
!!! TTTATTTTTTATTTTTTATG+GGG + Chr2:46785036-46785055 MsG0280009166.01.T01:intron 5.0%
AGAACATGCAATCACTGGCC+GGG - Chr2:46787339-46787358 None:intergenic 50.0%
ATGTGGAGGCGGTTAATCAC+TGG + Chr2:46785243-46785262 MsG0280009166.01.T01:intron 50.0%
CAGAACATGCAATCACTGGC+CGG - Chr2:46787340-46787359 None:intergenic 50.0%
CAGGGGAGAGGATTGAAATG+TGG + Chr2:46785145-46785164 MsG0280009166.01.T01:intron 50.0%
CATTGTCACCCAAACCATGC+TGG + Chr2:46786020-46786039 MsG0280009166.01.T01:intron 50.0%
CCATGGCAGAGACTTGATTC+AGG - Chr2:46785932-46785951 None:intergenic 50.0%
CCCACTTTGTGAACTTTGGG+AGG + Chr2:46786672-46786691 MsG0280009166.01.T01:intron 50.0%
CCCTCCCAAAGTTCACAAAG+TGG - Chr2:46786676-46786695 None:intergenic 50.0%
CCTGAATCAAGTCTCTGCCA+TGG + Chr2:46785929-46785948 MsG0280009166.01.T01:intron 50.0%
CGTCCAGTCAAAGCCTCAAA+AGG - Chr2:46787580-46787599 None:intergenic 50.0%
CTGTGCGGTCAACTGTAATC+TGG + Chr2:46787041-46787060 MsG0280009166.01.T01:intron 50.0%
GAGTTAGCGAACTCCACCAA+AGG + Chr2:46786541-46786560 MsG0280009166.01.T01:intron 50.0%
GAGTTCGCTAACTCCACAGT+GGG - Chr2:46786535-46786554 None:intergenic 50.0%
GGAAAGACACTACTAGGGCA+GGG + Chr2:46785459-46785478 MsG0280009166.01.T01:intron 50.0%
GGAGAGGATTGAAAGGTGGA+TGG - Chr2:46786128-46786147 None:intergenic 50.0%
GGTCTGTTAGGGGTAAACCA+TGG + Chr2:46785346-46785365 MsG0280009166.01.T01:intron 50.0%
TCACTAAGCTTCACGGCTAC+TGG - Chr2:46786905-46786924 None:intergenic 50.0%
TGACACATGACTTCCCACTG+TGG + Chr2:46786519-46786538 MsG0280009166.01.T01:intron 50.0%
TGGAAAGACACTACTAGGGC+AGG + Chr2:46785458-46785477 MsG0280009166.01.T01:intron 50.0%
TGGGGCAATGTTTGAGAGGT+AGG + Chr2:46785054-46785073 MsG0280009166.01.T01:intron 50.0%
TTTCGAAGGACATGTGGAGG+CGG + Chr2:46785232-46785251 MsG0280009166.01.T01:intron 50.0%
TTTGGGCGGTAACAGTGTCA+CGG + Chr2:46785280-46785299 MsG0280009166.01.T01:intron 50.0%
! AGTGGCGGAAAAAAGGGTAC+AGG + Chr2:46785126-46785145 MsG0280009166.01.T01:intron 50.0%
! GAAAAAAGGGTACAGGGGAG+AGG + Chr2:46785133-46785152 MsG0280009166.01.T01:intron 50.0%
! GGAAAAGAGGGTACATGGAG+AGG - Chr2:46786144-46786163 None:intergenic 50.0%
! GTGGCGGAAAAAAGGGTACA+GGG + Chr2:46785127-46785146 MsG0280009166.01.T01:intron 50.0%
! TGGCGGAAAAAAGGGTACAG+GGG + Chr2:46785128-46785147 MsG0280009166.01.T01:intron 50.0%
! TGGTGAAGTGGCGGAAAAGA+GGG - Chr2:46786156-46786175 None:intergenic 50.0%
!! GGTGCCCAAAGAGCATTAAG+AGG - Chr2:46785399-46785418 None:intergenic 50.0%
!!! CGCCCAAGTGCTTGTTTTGA+TGG - Chr2:46787302-46787321 None:intergenic 50.0%
AGCGTGTTACCTCGACACTG+AGG + Chr2:46785082-46785101 MsG0280009166.01.T01:intron 55.0%
CGACACTGAGGTGACAGTGA+TGG + Chr2:46785094-46785113 MsG0280009166.01.T01:intron 55.0%
CGGTGGAACCAGCATGGTTT+GGG - Chr2:46786031-46786050 None:intergenic 55.0%
GAAGGAATGGCAAGAGACCC+AGG - Chr2:46785204-46785223 None:intergenic 55.0%
GGAGTTCGCTAACTCCACAG+TGG - Chr2:46786536-46786555 None:intergenic 55.0%
GGGCGTGTCATGTGTGATTG+TGG + Chr2:46784973-46784992 MsG0280009166.01.T01:intron 55.0%
TCACTGTCACCTCAGTGTCG+AGG - Chr2:46785094-46785113 None:intergenic 55.0%
TGGAGGCGGTTAATCACTGG+TGG + Chr2:46785246-46785265 MsG0280009166.01.T01:intron 55.0%
TTGGGCGGTAACAGTGTCAC+GGG + Chr2:46785281-46785300 MsG0280009166.01.T01:intron 55.0%
! CTGGTGAAGTGGCGGAAAAG+AGG - Chr2:46786157-46786176 None:intergenic 55.0%
! CTTCAACACTGGGGTGATGG+TGG - Chr2:46786185-46786204 None:intergenic 55.0%
! GTGGCGGAAAAGAGGGTACA+TGG - Chr2:46786149-46786168 None:intergenic 55.0%
!! CCAAACCATGCTGGTTCCAC+CGG + Chr2:46786029-46786048 MsG0280009166.01.T01:intron 55.0%
!! GGTGCCCAAAGAGCATCAAG+AGG + Chr2:46785896-46785915 MsG0280009166.01.T01:intron 55.0%
ACGTGGCAGCGATTGAGCAC+CGG - Chr2:46786051-46786070 None:intergenic 60.0%
CAAGCACTTGGGCGAGCATG+TGG + Chr2:46787308-46787327 MsG0280009166.01.T01:CDS 60.0%
CCGGTGGAACCAGCATGGTT+TGG - Chr2:46786032-46786051 None:intergenic 60.0%
GCGGTAACAGTGTCACGGGT+AGG + Chr2:46785285-46785304 MsG0280009166.01.T01:intron 60.0%
! TGGCGGATCTGGTGAAGTGG+CGG - Chr2:46786165-46786184 None:intergenic 60.0%
!! CAACACTGGGGTGATGGTGG+CGG - Chr2:46786182-46786201 None:intergenic 60.0%
!! TGGTGGCGGATCTGGTGAAG+TGG - Chr2:46786168-46786187 None:intergenic 60.0%
GGCGAGCATGTGGTGTGACC+CGG + Chr2:46787318-46787337 MsG0280009166.01.T01:CDS 65.0%
!! GAGCACCGGTGGAACCAGCA+TGG - Chr2:46786037-46786056 None:intergenic 65.0%
!! TGGCAGCGATTGAGCACCGG+TGG - Chr2:46786048-46786067 None:intergenic 65.0%
!! TGGGGTGATGGTGGCGGATC+TGG - Chr2:46786176-46786195 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 46784517 46787787 46784517 ID=MsG0280009166.01;Name=MsG0280009166.01
Chr2 mRNA 46784517 46787787 46784517 ID=MsG0280009166.01.T01;Parent=MsG0280009166.01;Name=MsG0280009166.01.T01;_AED=0.41;_eAED=0.41;_QI=0|1|0.75|1|1|1|4|258|129
Chr2 exon 46787503 46787787 46787503 ID=MsG0280009166.01.T01:exon:36817;Parent=MsG0280009166.01.T01
Chr2 exon 46787278 46787409 46787278 ID=MsG0280009166.01.T01:exon:36816;Parent=MsG0280009166.01.T01
Chr2 exon 46784803 46784906 46784803 ID=MsG0280009166.01.T01:exon:36815;Parent=MsG0280009166.01.T01
Chr2 exon 46784517 46784643 46784517 ID=MsG0280009166.01.T01:exon:36814;Parent=MsG0280009166.01.T01
Chr2 CDS 46784517 46784643 46784517 ID=MsG0280009166.01.T01:cds;Parent=MsG0280009166.01.T01
Chr2 CDS 46784803 46784906 46784803 ID=MsG0280009166.01.T01:cds;Parent=MsG0280009166.01.T01
Chr2 CDS 46787278 46787409 46787278 ID=MsG0280009166.01.T01:cds;Parent=MsG0280009166.01.T01
Chr2 CDS 46787503 46787529 46787503 ID=MsG0280009166.01.T01:cds;Parent=MsG0280009166.01.T01
Chr2 three_prime_UTR 46787530 46787787 46787530 ID=MsG0280009166.01.T01:three_prime_utr;Parent=MsG0280009166.01.T01
Gene Sequence

>MsG0280009166.01.T01

TTGCAGACAGGAGAAACAGTGAATCCAAAAGCTTACCCTTTGGCTGATGCACAACTTACGATAACGATAATGGATCTTGTTCAACAAGCTGCTAATTACAAGCAACTCAAAAAGGGTGCCAATGAAGCTACAAAGACACTTAACAGAGGCATTTCTGAGTTTGTTGTGATGGCTGCAGACACTGAACCACTTGAGATTCTTCTTCATCTTCCTTTACTCGCTGAGGATAAGAATGTTCCTTATGTATTTGTCCCATCAAAACAAGCACTTGGGCGAGCATGTGGTGTGACCCGGCCAGTGATTGCATGTTCTGTGACAACCAATGAGGGAAGTCAACTTAAATCTCAAATACAGCAACTAAAGGATGCTATTGAGAAGCTGTTGATCTGA
Protein sequence

>MsG0280009166.01.T01

LQTGETVNPKAYPLADAQLTITIMDLVQQAANYKQLKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI*