Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280008557.01.T01 | KEH37666.1 | 89.247 | 186 | 5 | 1 | 1 | 186 | 1 | 171 | 1.31E-107 | 319 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280008557.01.T01 | Q499W2 | 29.379 | 177 | 100 | 4 | 8 | 178 | 9 | 166 | 4.10E-13 | 68.9 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280008557.01.T01 | A0A072V7Q0 | 89.247 | 186 | 5 | 1 | 1 | 186 | 1 | 171 | 6.26e-108 | 319 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180001551.01 | MsG0280008557.01 | -0.811746 | 5.999307e-51 | 3.743922e-48 |
MsG0180002912.01 | MsG0280008557.01 | -0.845943 | 2.962575e-59 | 5.018489e-56 |
MsG0180003948.01 | MsG0280008557.01 | -0.807042 | 6.130640e-50 | 3.379691e-47 |
MsG0180004060.01 | MsG0280008557.01 | -0.822174 | 2.727731e-53 | 2.265851e-50 |
MsG0180004388.01 | MsG0280008557.01 | -0.826876 | 2.132434e-54 | 2.025082e-51 |
MsG0180005860.01 | MsG0280008557.01 | -0.803070 | 4.154090e-49 | 2.067789e-46 |
MsG0180006016.01 | MsG0280008557.01 | -0.821131 | 4.753373e-53 | 3.834317e-50 |
MsG0180006023.01 | MsG0280008557.01 | -0.822011 | 2.975697e-53 | 2.460370e-50 |
MsG0180006069.01 | MsG0280008557.01 | -0.801267 | 9.762254e-49 | 4.641977e-46 |
MsG0180006235.01 | MsG0280008557.01 | -0.813973 | 1.951383e-51 | 1.292922e-48 |
MsG0280006595.01 | MsG0280008557.01 | -0.802493 | 5.464994e-49 | 2.680707e-46 |
MsG0280007071.01 | MsG0280008557.01 | -0.803780 | 2.960049e-49 | 1.500629e-46 |
MsG0280007564.01 | MsG0280008557.01 | -0.811663 | 6.254369e-51 | 3.894319e-48 |
MsG0280007609.01 | MsG0280008557.01 | -0.834393 | 3.076662e-56 | 3.646227e-53 |
MsG0280008286.01 | MsG0280008557.01 | -0.803391 | 3.564672e-49 | 1.789143e-46 |
MsG0280008557.01 | MsG0280008907.01 | -0.804574 | 2.023765e-49 | 1.047107e-46 |
MsG0280008557.01 | MsG0280010389.01 | -0.842394 | 2.656107e-58 | 4.022067e-55 |
MsG0280008557.01 | MsG0280010447.01 | -0.801602 | 8.335179e-49 | 3.996812e-46 |
MsG0280008557.01 | MsG0280010614.01 | -0.811386 | 7.184450e-51 | 4.441074e-48 |
MsG0280008557.01 | MsG0280011070.01 | -0.812105 | 5.012136e-51 | 3.158243e-48 |
MsG0280008557.01 | MsG0380011754.01 | -0.806293 | 8.825579e-50 | 4.772617e-47 |
MsG0280008557.01 | MsG0380012124.01 | -0.819903 | 9.096476e-53 | 7.091392e-50 |
MsG0280008557.01 | MsG0380014365.01 | -0.800517 | 1.388680e-48 | 6.479028e-46 |
MsG0280008557.01 | MsG0380015181.01 | -0.814641 | 1.389462e-51 | 9.374512e-49 |
MsG0280008557.01 | MsG0380015713.01 | -0.812775 | 3.576977e-51 | 2.294472e-48 |
MsG0280008557.01 | MsG0380017403.01 | -0.809887 | 1.514812e-50 | 9.000144e-48 |
MsG0280008557.01 | MsG0380017998.01 | -0.818420 | 1.978309e-52 | 1.480224e-49 |
MsG0280008557.01 | MsG0480018970.01 | -0.821195 | 4.593449e-53 | 3.712127e-50 |
MsG0280008557.01 | MsG0480019816.01 | -0.803479 | 3.417820e-49 | 1.719385e-46 |
MsG0280008557.01 | MsG0480020065.01 | -0.800515 | 1.390323e-48 | 6.486290e-46 |
MsG0280008557.01 | MsG0480020090.01 | -0.844384 | 7.816908e-59 | 1.259728e-55 |
MsG0280008557.01 | MsG0480020416.01 | -0.809735 | 1.633573e-50 | 9.667497e-48 |
MsG0280008557.01 | MsG0480020445.01 | -0.819077 | 1.403391e-52 | 1.069167e-49 |
MsG0280008557.01 | MsG0480021772.01 | -0.805146 | 1.537037e-49 | 8.070974e-47 |
MsG0280008557.01 | MsG0480022480.01 | -0.838874 | 2.218878e-57 | 3.011693e-54 |
MsG0280008557.01 | MsG0480023224.01 | -0.809353 | 1.972850e-50 | 1.155773e-47 |
MsG0280008557.01 | MsG0480023245.01 | -0.819765 | 9.778031e-53 | 7.593884e-50 |
MsG0280008557.01 | MsG0480023412.01 | -0.811411 | 7.094536e-51 | 4.388574e-48 |
MsG0280008557.01 | MsG0480023707.01 | -0.802673 | 5.017048e-49 | 2.472314e-46 |
MsG0280008557.01 | MsG0580024073.01 | -0.811661 | 6.261898e-51 | 3.898811e-48 |
MsG0280008557.01 | MsG0580024618.01 | -0.805774 | 1.134771e-49 | 6.055818e-47 |
MsG0280008557.01 | MsG0580025989.01 | -0.813615 | 2.339558e-51 | 1.535241e-48 |
MsG0280008557.01 | MsG0580027129.01 | -0.822849 | 1.900919e-53 | 1.609817e-50 |
MsG0280008557.01 | MsG0580027345.01 | -0.803816 | 2.910553e-49 | 1.476905e-46 |
MsG0280008557.01 | MsG0580028185.01 | -0.830279 | 3.210963e-55 | 3.367412e-52 |
MsG0280008557.01 | MsG0580029189.01 | -0.846617 | 1.940502e-59 | 3.359409e-56 |
MsG0280008557.01 | MsG0580029762.01 | -0.801841 | 7.444050e-49 | 3.591494e-46 |
MsG0280008557.01 | MsG0580029960.01 | -0.806579 | 7.680717e-50 | 4.183861e-47 |
MsG0280008557.01 | MsG0580030235.01 | -0.832972 | 6.966277e-56 | 7.911717e-53 |
MsG0280008557.01 | MsG0680030685.01 | -0.818741 | 1.672835e-52 | 1.262696e-49 |
MsG0280008557.01 | MsG0680031651.01 | -0.821017 | 5.047906e-53 | 4.059388e-50 |
MsG0280008557.01 | MsG0680034450.01 | -0.803352 | 3.631889e-49 | 1.820991e-46 |
MsG0280008557.01 | MsG0680035777.01 | -0.810837 | 9.449858e-51 | 5.757477e-48 |
MsG0280008557.01 | MsG0780036177.01 | 0.819560 | 1.089244e-52 | 8.410724e-50 |
MsG0280008557.01 | MsG0780037109.01 | -0.810245 | 1.268541e-50 | 7.607908e-48 |
MsG0280008557.01 | MsG0780037895.01 | -0.804151 | 2.479296e-49 | 1.268942e-46 |
MsG0280008557.01 | MsG0780038495.01 | -0.804105 | 2.533740e-49 | 1.295289e-46 |
MsG0280008557.01 | MsG0780040044.01 | -0.818666 | 1.740224e-52 | 1.310773e-49 |
MsG0280008557.01 | MsG0780040442.01 | -0.823972 | 1.038555e-53 | 9.078328e-51 |
MsG0280008557.01 | MsG0780040488.01 | -0.809191 | 2.137617e-50 | 1.246848e-47 |
MsG0280008557.01 | MsG0780040699.01 | 0.802012 | 6.864655e-49 | 3.326304e-46 |
MsG0280008557.01 | MsG0780041754.01 | -0.816170 | 6.349506e-52 | 4.466288e-49 |
MsG0280008557.01 | MsG0880041883.01 | -0.828162 | 1.047783e-54 | 1.033164e-51 |
MsG0280008557.01 | MsG0880042543.01 | -0.808386 | 3.176854e-50 | 1.814066e-47 |
MsG0280008557.01 | MsG0880043745.01 | -0.809787 | 1.592336e-50 | 9.436327e-48 |
MsG0280008557.01 | MsG0880044917.01 | -0.800175 | 1.630616e-48 | 7.541741e-46 |
MsG0280008557.01 | MsG0880046669.01 | -0.824342 | 8.500986e-54 | 7.508707e-51 |
MsG0280008557.01 | MsG0880046753.01 | -0.808848 | 2.531701e-50 | 1.463145e-47 |
MsG0280008557.01 | MsG0880046762.01 | -0.818351 | 2.051097e-52 | 1.531745e-49 |
MsG0280008557.01 | MsG0880047191.01 | -0.810692 | 1.015573e-50 | 6.163624e-48 |
MsG0280008557.01 | MsG0880047590.01 | -0.801064 | 1.074060e-48 | 5.081333e-46 |
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0280009166.01 | MsG0280008557.01 | PPI |
MsG0280008557.01 | MsG0480022910.01 | PPI |
MsG0280008557.01 | MsG0480019539.01 | PPI |
MsG0680034619.01 | MsG0280008557.01 | PPI |
MsG0280008557.01 | MsG0880046760.01 | PPI |
MsG0280008557.01 | MsG0780037195.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280008557.01.T01 | MTR_2g044210 | 89.247 | 186 | 5 | 1 | 1 | 186 | 1 | 171 | 1.59e-111 | 319 |
MsG0280008557.01.T01 | MTR_2g044210 | 89.247 | 186 | 5 | 1 | 1 | 186 | 1 | 171 | 1.87e-111 | 318 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0280008557.01.T01 | AT5G49010 | 56.085 | 189 | 64 | 2 | 1 | 189 | 1 | 170 | 5.90e-64 | 196 |
MsG0280008557.01.T01 | AT5G49010 | 53.659 | 205 | 73 | 3 | 1 | 205 | 1 | 183 | 9.11e-63 | 194 |
Find 34 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCACAGTTTCTTCCTGTAAA+AGG | 0.200767 | 2:+33927424 | None:intergenic |
ATAGAACCTTGTTTCTATTA+AGG | 0.244460 | 2:-33927341 | MsG0280008557.01.T01:CDS |
AACTTTGGAACAGACTTTCT+AGG | 0.280314 | 2:-33926893 | MsG0280008557.01.T01:CDS |
AAGAAATAACAAAACCAAAA+AGG | 0.347885 | 2:+33926583 | None:intergenic |
CAAAGGACAGATTGAATTGA+TGG | 0.410021 | 2:-33927683 | MsG0280008557.01.T01:CDS |
TGCTCTCTAGATGTTCCTTC+AGG | 0.422302 | 2:+33926703 | None:intergenic |
AGTCCTAGACAGACACAAAA+TGG | 0.422702 | 2:+33926555 | None:intergenic |
AACATCAGTGGTTGAAATCA+AGG | 0.435422 | 2:+33927786 | None:intergenic |
GATTCAAAACGAAGAATCTC+GGG | 0.462194 | 2:+33927724 | None:intergenic |
TTCTGTATCTCTGTATCAGA+TGG | 0.469476 | 2:-33927370 | MsG0280008557.01.T01:CDS |
ATCCATGGGTTCAAGATCTA+CGG | 0.481878 | 2:-33927845 | None:intergenic |
TTGTGTCTGTCTAGGACTGT+AGG | 0.494962 | 2:-33926550 | None:intergenic |
AGATTCAAAACGAAGAATCT+CGG | 0.501966 | 2:+33927723 | None:intergenic |
ACTTTGGAACAGACTTTCTA+GGG | 0.506098 | 2:-33926892 | MsG0280008557.01.T01:CDS |
GCGAGCATGGCGTAACGAAA+AGG | 0.511669 | 2:-33927752 | MsG0280008557.01.T01:CDS |
GATTTGATCAACCGCGTCAA+AGG | 0.524234 | 2:-33927700 | MsG0280008557.01.T01:CDS |
TTCCGTAGATCTTGAACCCA+TGG | 0.527155 | 2:+33927843 | None:intergenic |
TTACCTTCAGGATGCGGATG+CGG | 0.527448 | 2:+33927310 | None:intergenic |
GACTGATTACCTTCAGGATG+CGG | 0.542811 | 2:+33927304 | None:intergenic |
CATTAGTGAAGAGGATGACA+TGG | 0.553868 | 2:-33926628 | MsG0280008557.01.T01:CDS |
TTGAGCTTCTCAAGCGAGCA+TGG | 0.560140 | 2:-33927765 | MsG0280008557.01.T01:CDS |
ACAATCTGTCATTAGTGAAG+AGG | 0.570258 | 2:-33926637 | MsG0280008557.01.T01:CDS |
TCTCCGCATCCGCATCCTGA+AGG | 0.576234 | 2:-33927313 | MsG0280008557.01.T01:intron |
TGATACAGAGATACAGAAAG+AGG | 0.584753 | 2:+33927375 | None:intergenic |
CTTGAGAAGCTCAACATCAG+TGG | 0.611012 | 2:+33927774 | None:intergenic |
GATACAGAGATACAGAAAGA+GGG | 0.651435 | 2:+33927376 | None:intergenic |
CAGGTGCACAGATGACCTGA+AGG | 0.652118 | 2:-33926718 | MsG0280008557.01.T01:CDS |
GTGGAAGAGAAATTGTCTGT+TGG | 0.657885 | 2:-33927405 | MsG0280008557.01.T01:CDS |
ATGGGTTCAAGATCTACGGA+AGG | 0.674495 | 2:-33927841 | MsG0280008557.01.T01:CDS |
ATTCAAAACGAAGAATCTCG+GGG | 0.677114 | 2:+33927725 | None:intergenic |
ATTCAATCTGTCCTTTGACG+CGG | 0.682411 | 2:+33927689 | None:intergenic |
ATTAGTGAAGAGGATGACAT+GGG | 0.687742 | 2:-33926627 | MsG0280008557.01.T01:CDS |
ATATGACCTTAATAGAAACA+AGG | 0.692807 | 2:+33927335 | None:intergenic |
TTCAAAACGAAGAATCTCGG+GGG | 0.737687 | 2:+33927726 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATCTAGTTAAAGATTAATA+AGG | + | Chr2:33927253-33927272 | None:intergenic | 15.0% |
!! | ATTACATAAAACTATGATAT+AGG | + | Chr2:33927336-33927355 | None:intergenic | 15.0% |
!!! | TAACTAGATTGAAATTTTTT+CGG | - | Chr2:33927263-33927282 | MsG0280008557.01.T01:intron | 15.0% |
!! | AAAATTGAAATTCATTTCAG+TGG | + | Chr2:33926788-33926807 | None:intergenic | 20.0% |
!! | AAGAAATAACAAAACCAAAA+AGG | + | Chr2:33927812-33927831 | None:intergenic | 20.0% |
!! | GAACTTAAATTTCTTATTGT+CGG | - | Chr2:33926866-33926885 | MsG0280008557.01.T01:intron | 20.0% |
!! | TTATTAAATGTGAAGTAACT+AGG | + | Chr2:33926936-33926955 | None:intergenic | 20.0% |
!! | TTGTTGAAATATTTGAATAC+TGG | - | Chr2:33927371-33927390 | MsG0280008557.01.T01:CDS | 20.0% |
!!! | GTTTTTAAATCTAGTTTTCT+GGG | - | Chr2:33927649-33927668 | MsG0280008557.01.T01:intron | 20.0% |
!!! | TGTTTTTAAATCTAGTTTTC+TGG | - | Chr2:33927648-33927667 | MsG0280008557.01.T01:intron | 20.0% |
!!! | TTTGGTTTTGTTATTTCTTA+TGG | - | Chr2:33927813-33927832 | MsG0280008557.01.T01:CDS | 20.0% |
! | AAATATTATCTCGCAAATAG+AGG | + | Chr2:33927294-33927313 | None:intergenic | 25.0% |
! | AAGAAATCACAAAAAGTAGA+AGG | + | Chr2:33926754-33926773 | None:intergenic | 25.0% |
! | AATCTAGTGAATATAGCAAT+AGG | + | Chr2:33927405-33927424 | None:intergenic | 25.0% |
! | ATATGACCTTAATAGAAACA+AGG | + | Chr2:33927060-33927079 | None:intergenic | 25.0% |
! | CAAGTGATAGGATTATTTAT+GGG | - | Chr2:33927133-33927152 | MsG0280008557.01.T01:intron | 25.0% |
! | CTAGTTAAAGATTAATAAGG+CGG | + | Chr2:33927250-33927269 | None:intergenic | 25.0% |
! | GTAAGGCAACAATAAATTAT+TGG | + | Chr2:33927212-33927231 | None:intergenic | 25.0% |
! | TATGATATAGGTAGAAACTA+AGG | + | Chr2:33927324-33927343 | None:intergenic | 25.0% |
! | TCAAGTGATAGGATTATTTA+TGG | - | Chr2:33927132-33927151 | MsG0280008557.01.T01:intron | 25.0% |
! | TTCGATCTGCAATATAAATA+TGG | + | Chr2:33927448-33927467 | None:intergenic | 25.0% |
!! | TCATAAGACTGATAATTTTC+AGG | + | Chr2:33927732-33927751 | None:intergenic | 25.0% |
!!! | ATAGAACCTTGTTTCTATTA+AGG | - | Chr2:33927051-33927070 | MsG0280008557.01.T01:intron | 25.0% |
!!! | GAATTTCAATTTTGAAGACA+TGG | - | Chr2:33926795-33926814 | MsG0280008557.01.T01:intron | 25.0% |
!!! | GTTTTAAAAGATAGCAATGT+AGG | - | Chr2:33927617-33927636 | MsG0280008557.01.T01:intron | 25.0% |
AGATTCAAAACGAAGAATCT+CGG | + | Chr2:33926672-33926691 | None:intergenic | 30.0% | |
CCAAAAAGGACAACTAATAA+TGG | + | Chr2:33927798-33927817 | None:intergenic | 30.0% | |
! | AAACTTTTCACTGAAAGGTA+AGG | - | Chr2:33927528-33927547 | MsG0280008557.01.T01:intron | 30.0% |
! | AGCTATCTTTTACAACACAT+TGG | + | Chr2:33927558-33927577 | None:intergenic | 30.0% |
! | ATGTGTTTTTCTCCTTTTAC+AGG | - | Chr2:33926956-33926975 | MsG0280008557.01.T01:intron | 30.0% |
! | CCATTATTAGTTGTCCTTTT+TGG | - | Chr2:33927795-33927814 | MsG0280008557.01.T01:CDS | 30.0% |
! | GTAACCTTTCATTGATGTTT+TGG | - | Chr2:33926903-33926922 | MsG0280008557.01.T01:CDS | 30.0% |
! | TCCAAAGTTCTTGAGTTTTT+CGG | + | Chr2:33927488-33927507 | None:intergenic | 30.0% |
AACATCAGTGGTTGAAATCA+AGG | + | Chr2:33926609-33926628 | None:intergenic | 35.0% | |
ACAATCTGTCATTAGTGAAG+AGG | - | Chr2:33927755-33927774 | MsG0280008557.01.T01:CDS | 35.0% | |
ACCACCAAAACATCAATGAA+AGG | + | Chr2:33926910-33926929 | None:intergenic | 35.0% | |
ATTAGTGAAGAGGATGACAT+GGG | - | Chr2:33927765-33927784 | MsG0280008557.01.T01:CDS | 35.0% | |
ATTCAAAACGAAGAATCTCG+GGG | + | Chr2:33926670-33926689 | None:intergenic | 35.0% | |
CAAAGGACAGATTGAATTGA+TGG | - | Chr2:33926709-33926728 | MsG0280008557.01.T01:CDS | 35.0% | |
GATACAGAGATACAGAAAGA+GGG | + | Chr2:33927019-33927038 | None:intergenic | 35.0% | |
GATATAGGTAGAAACTAAGG+TGG | + | Chr2:33927321-33927340 | None:intergenic | 35.0% | |
GATTCAAAACGAAGAATCTC+GGG | + | Chr2:33926671-33926690 | None:intergenic | 35.0% | |
TCCGAAAAACTCAAGAACTT+TGG | - | Chr2:33927484-33927503 | MsG0280008557.01.T01:intron | 35.0% | |
TGATACAGAGATACAGAAAG+AGG | + | Chr2:33927020-33927039 | None:intergenic | 35.0% | |
TTCTGTATCTCTGTATCAGA+TGG | - | Chr2:33927022-33927041 | MsG0280008557.01.T01:intron | 35.0% | |
! | ACGAGAAACTTTTCACTGAA+AGG | - | Chr2:33927523-33927542 | MsG0280008557.01.T01:intron | 35.0% |
! | AGCTTTTACACTCAAGTGAT+AGG | - | Chr2:33927121-33927140 | MsG0280008557.01.T01:intron | 35.0% |
!! | AACTTTGGAACAGACTTTCT+AGG | - | Chr2:33927499-33927518 | MsG0280008557.01.T01:intron | 35.0% |
!! | ACCTTTCATTGATGTTTTGG+TGG | - | Chr2:33926906-33926925 | MsG0280008557.01.T01:CDS | 35.0% |
!! | ACTTTGGAACAGACTTTCTA+GGG | - | Chr2:33927500-33927519 | MsG0280008557.01.T01:intron | 35.0% |
AGATAGCAATGTAGGCTACT+TGG | - | Chr2:33927625-33927644 | MsG0280008557.01.T01:intron | 40.0% | |
AGTCCTAGACAGACACAAAA+TGG | + | Chr2:33927840-33927859 | None:intergenic | 40.0% | |
ATTCAATCTGTCCTTTGACG+CGG | + | Chr2:33926706-33926725 | None:intergenic | 40.0% | |
CATTAGTGAAGAGGATGACA+TGG | - | Chr2:33927764-33927783 | MsG0280008557.01.T01:CDS | 40.0% | |
CCACAGTTTCTTCCTGTAAA+AGG | + | Chr2:33926971-33926990 | None:intergenic | 40.0% | |
GGTGTTAATACTTGAGGGTA+AGG | + | Chr2:33927229-33927248 | None:intergenic | 40.0% | |
GTGGAAGAGAAATTGTCTGT+TGG | - | Chr2:33926987-33927006 | MsG0280008557.01.T01:intron | 40.0% | |
TCCTGAAGGTAATCAGTCAT+AGG | - | Chr2:33927093-33927112 | MsG0280008557.01.T01:intron | 40.0% | |
TTCAAAACGAAGAATCTCGG+GGG | + | Chr2:33926669-33926688 | None:intergenic | 40.0% | |
! | AAGGCGGTGTTAATACTTGA+GGG | + | Chr2:33927234-33927253 | None:intergenic | 40.0% |
! | CCTTTTACAGGAAGAAACTG+TGG | - | Chr2:33926968-33926987 | MsG0280008557.01.T01:intron | 40.0% |
! | TAAGGCGGTGTTAATACTTG+AGG | + | Chr2:33927235-33927254 | None:intergenic | 40.0% |
!! | GTTCTTGAGTTTTTCGGATG+TGG | + | Chr2:33927482-33927501 | None:intergenic | 40.0% |
!!! | AAATCTAGTTTTCTGGGTGC+AGG | - | Chr2:33927655-33927674 | MsG0280008557.01.T01:intron | 40.0% |
ATGGGTTCAAGATCTACGGA+AGG | - | Chr2:33926551-33926570 | MsG0280008557.01.T01:CDS | 45.0% | |
CTTGAGAAGCTCAACATCAG+TGG | + | Chr2:33926621-33926640 | None:intergenic | 45.0% | |
GACTGATTACCTTCAGGATG+CGG | + | Chr2:33927091-33927110 | None:intergenic | 45.0% | |
GATTTGATCAACCGCGTCAA+AGG | - | Chr2:33926692-33926711 | MsG0280008557.01.T01:CDS | 45.0% | |
GCCTATGACTGATTACCTTC+AGG | + | Chr2:33927097-33927116 | None:intergenic | 45.0% | |
TGCTCTCTAGATGTTCCTTC+AGG | + | Chr2:33927692-33927711 | None:intergenic | 45.0% | |
! | GGACCATTTTGTGTCTGTCT+AGG | - | Chr2:33927834-33927853 | MsG0280008557.01.T01:CDS | 45.0% |
TTACCTTCAGGATGCGGATG+CGG | + | Chr2:33927085-33927104 | None:intergenic | 50.0% | |
TTGAGCTTCTCAAGCGAGCA+TGG | - | Chr2:33926627-33926646 | MsG0280008557.01.T01:CDS | 50.0% | |
CAGGTGCACAGATGACCTGA+AGG | - | Chr2:33927674-33927693 | MsG0280008557.01.T01:intron | 55.0% | |
GCGAGCATGGCGTAACGAAA+AGG | - | Chr2:33926640-33926659 | MsG0280008557.01.T01:CDS | 55.0% | |
TCTCCGCATCCGCATCCTGA+AGG | - | Chr2:33927079-33927098 | MsG0280008557.01.T01:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 33926551 | 33927863 | 33926551 | ID=MsG0280008557.01;Name=MsG0280008557.01 |
Chr2 | mRNA | 33926551 | 33927863 | 33926551 | ID=MsG0280008557.01.T01;Parent=MsG0280008557.01;Name=MsG0280008557.01.T01;_AED=0.44;_eAED=0.51;_QI=0|0|0|1|0.66|0.5|4|0|205 |
Chr2 | exon | 33927679 | 33927863 | 33927679 | ID=MsG0280008557.01.T01:exon:15195;Parent=MsG0280008557.01.T01 |
Chr2 | exon | 33927314 | 33927476 | 33927314 | ID=MsG0280008557.01.T01:exon:15194;Parent=MsG0280008557.01.T01 |
Chr2 | exon | 33926870 | 33926952 | 33926870 | ID=MsG0280008557.01.T01:exon:15193;Parent=MsG0280008557.01.T01 |
Chr2 | exon | 33926551 | 33926737 | 33926551 | ID=MsG0280008557.01.T01:exon:15192;Parent=MsG0280008557.01.T01 |
Chr2 | CDS | 33927679 | 33927863 | 33927679 | ID=MsG0280008557.01.T01:cds;Parent=MsG0280008557.01.T01 |
Chr2 | CDS | 33927314 | 33927476 | 33927314 | ID=MsG0280008557.01.T01:cds;Parent=MsG0280008557.01.T01 |
Chr2 | CDS | 33926870 | 33926952 | 33926870 | ID=MsG0280008557.01.T01:cds;Parent=MsG0280008557.01.T01 |
Chr2 | CDS | 33926551 | 33926737 | 33926551 | ID=MsG0280008557.01.T01:cds;Parent=MsG0280008557.01.T01 |
Gene Sequence |
Protein sequence |