AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009717.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009717.01.T01 MTR_2g064470 79.456 331 21 6 1 314 6 306 0.0 510
MsG0280009717.01.T01 MTR_6g084430 35.743 249 112 8 2 233 1 218 8.81e-37 134
MsG0280009717.01.T01 MTR_1g069805 35.448 268 118 9 2 253 6 234 6.65e-36 130
MsG0280009717.01.T01 MTR_6g012670 35.338 266 109 9 5 249 19 242 7.92e-36 132
MsG0280009717.01.T01 MTR_7g097090 44.134 179 55 7 2 164 6 155 1.38e-35 130
MsG0280009717.01.T01 MTR_4g108760 34.754 305 127 14 6 269 17 290 8.68e-35 130
MsG0280009717.01.T01 MTR_7g085260 39.474 228 73 11 6 199 17 213 2.03e-33 126
MsG0280009717.01.T01 MTR_6g032770 38.158 228 83 10 6 204 18 216 6.22e-32 122
MsG0280009717.01.T01 MTR_1g008740 40.415 193 66 8 3 175 10 173 8.02e-32 121
MsG0280009717.01.T01 MTR_1g008740 40.415 193 66 8 3 175 24 187 9.43e-32 122
MsG0280009717.01.T01 MTR_4g101680 41.622 185 66 7 4 172 5 163 1.73e-31 121
MsG0280009717.01.T01 MTR_4g036030 42.135 178 61 7 4 165 5 156 1.78e-31 120
MsG0280009717.01.T01 MTR_3g070030 36.653 251 87 11 5 224 18 227 1.94e-31 120
MsG0280009717.01.T01 MTR_3g435150 36.441 236 89 10 6 215 16 216 2.95e-31 119
MsG0280009717.01.T01 MTR_1g096430 39.444 180 67 7 2 165 3 156 1.42e-30 118
MsG0280009717.01.T01 MTR_3g109340 41.209 182 58 8 3 165 19 170 1.55e-30 118
MsG0280009717.01.T01 MTR_2g078700 41.935 186 57 8 3 166 20 176 2.05e-30 118
MsG0280009717.01.T01 MTR_3g109340 40.437 183 59 8 3 165 19 171 2.40e-30 118
MsG0280009717.01.T01 MTR_5g012080 34.586 266 122 12 4 245 5 242 5.09e-30 117
MsG0280009717.01.T01 MTR_2g062730 41.530 183 58 9 3 165 7 160 7.96e-30 116
MsG0280009717.01.T01 MTR_8g076110 38.298 188 74 7 1 172 1 162 1.36e-29 115
MsG0280009717.01.T01 MTR_5g021710 39.444 180 67 7 2 165 4 157 2.67e-29 115
MsG0280009717.01.T01 MTR_2g064090 38.220 191 72 6 1 172 1 164 3.60e-29 114
MsG0280009717.01.T01 MTR_8g024480 36.735 196 71 7 3 171 12 181 5.08e-29 115
MsG0280009717.01.T01 MTR_4g035590 41.143 175 62 7 6 165 8 156 3.35e-28 112
MsG0280009717.01.T01 MTR_3g064580 37.688 199 75 8 1 180 1 169 7.51e-27 110
MsG0280009717.01.T01 MTR_3g116070 43.506 154 51 7 3 149 20 144 2.29e-26 107
MsG0280009717.01.T01 MTR_5g076850 37.321 209 83 9 1 191 1 179 3.38e-26 108
MsG0280009717.01.T01 MTR_7g005280 34.135 208 76 8 3 182 12 186 6.88e-26 103
MsG0280009717.01.T01 MTR_7g011130 42.763 152 52 7 3 149 16 137 1.42e-25 105
MsG0280009717.01.T01 MTR_7g100990 36.957 184 63 8 3 162 8 162 6.31e-25 102
MsG0280009717.01.T01 MTR_8g059170 27.066 351 175 12 1 308 9 321 1.19e-24 102
MsG0280009717.01.T01 MTR_6g477900 34.010 197 85 6 1 179 1 170 1.22e-24 100
MsG0280009717.01.T01 MTR_2g079990 33.508 191 79 6 1 173 11 171 1.72e-24 102
MsG0280009717.01.T01 MTR_2g080010 34.536 194 67 8 3 165 12 176 3.92e-24 100
MsG0280009717.01.T01 MTR_3g070040 33.465 254 93 10 3 224 5 214 5.86e-24 100
MsG0280009717.01.T01 MTR_4g081870 32.065 184 74 5 4 165 7 161 1.49e-23 97.8
MsG0280009717.01.T01 MTR_5g041940 33.880 183 70 7 5 165 2 155 1.64e-23 97.4
MsG0280009717.01.T01 MTR_7g011120 42.857 140 46 6 3 138 5 114 2.17e-23 98.2
MsG0280009717.01.T01 MTR_3g088110 30.605 281 115 11 3 234 4 253 3.62e-23 97.1
MsG0280009717.01.T01 MTR_7g085220 31.122 196 75 6 3 167 5 171 5.92e-23 97.4
MsG0280009717.01.T01 MTR_2157s0010 29.259 270 120 11 6 245 8 236 6.99e-23 95.9
MsG0280009717.01.T01 MTR_2g093810 34.254 181 66 8 6 162 14 165 2.08e-22 95.9
MsG0280009717.01.T01 MTR_8g094580 29.921 254 117 10 5 232 6 224 1.39e-21 92.8
MsG0280009717.01.T01 MTR_5g069030 35.165 182 73 6 5 168 24 178 1.79e-21 95.1
MsG0280009717.01.T01 MTR_5g014300 35.079 191 75 8 1 169 1 164 4.25e-21 92.4
MsG0280009717.01.T01 MTR_2g068920 28.214 280 127 10 8 241 23 274 6.95e-21 90.9
MsG0280009717.01.T01 MTR_0036s0150 34.426 183 63 8 8 166 7 156 2.64e-20 91.7
MsG0280009717.01.T01 MTR_4g098630 36.923 195 72 9 1 171 1 168 2.83e-20 89.7
MsG0280009717.01.T01 MTR_3g093050 33.702 181 75 6 6 168 22 175 3.47e-20 91.3
MsG0280009717.01.T01 MTR_8g023840 37.209 172 66 7 6 162 11 155 4.20e-20 90.1
MsG0280009717.01.T01 MTR_3g093050 33.702 181 75 6 6 168 22 175 4.91e-20 90.9
MsG0280009717.01.T01 MTR_3g096920 34.043 188 73 8 3 169 4 161 5.58e-20 88.6
MsG0280009717.01.T01 MTR_3g093040 30.472 233 108 10 6 215 108 309 8.18e-20 88.2
MsG0280009717.01.T01 MTR_2g068880 28.996 269 107 11 8 232 24 252 1.34e-19 87.8
MsG0280009717.01.T01 MTR_1g090723 35.393 178 66 9 8 165 10 158 4.35e-19 88.2
MsG0280009717.01.T01 MTR_8g467490 32.000 200 78 8 2 172 10 180 6.14e-19 87.0
MsG0280009717.01.T01 MTR_1g090723 35.196 179 66 9 8 165 10 159 6.21e-19 87.8
MsG0280009717.01.T01 MTR_1g090723 35.196 179 67 9 8 166 10 159 6.24e-19 87.8
MsG0280009717.01.T01 MTR_3g096140 34.783 184 74 9 1 165 1 157 1.12e-18 84.7
MsG0280009717.01.T01 MTR_3g096140 34.783 184 74 9 1 165 1 157 2.40e-18 84.7
MsG0280009717.01.T01 MTR_5g040420 31.088 193 76 7 8 172 16 179 1.59e-17 82.8
MsG0280009717.01.T01 MTR_4g134460 29.520 271 134 10 8 258 56 289 2.14e-17 82.8
MsG0280009717.01.T01 MTR_8g063550 30.435 184 81 7 1 165 1 156 2.41e-17 81.6
MsG0280009717.01.T01 MTR_8g063550 30.435 184 81 7 1 165 1 156 3.27e-17 82.0
MsG0280009717.01.T01 MTR_8g063550 30.435 184 81 7 1 165 1 156 5.63e-17 81.3
MsG0280009717.01.T01 MTR_8g023860 34.302 172 71 8 6 162 12 156 1.60e-16 80.1
MsG0280009717.01.T01 MTR_8g093580 29.730 185 81 7 1 165 1 156 9.70e-16 77.8
MsG0280009717.01.T01 MTR_1g097300 33.951 162 72 7 8 161 21 155 2.98e-15 76.6
MsG0280009717.01.T01 MTR_8g023880 32.086 187 71 8 6 165 7 164 4.54e-15 74.3
MsG0280009717.01.T01 MTR_8g023900 30.220 182 83 6 1 165 7 161 1.53e-14 74.3
MsG0280009717.01.T01 MTR_8g023900 31.461 178 77 7 9 168 196 346 1.46e-12 68.2
MsG0280009717.01.T01 MTR_8g023930 29.798 198 93 8 6 187 24 191 1.61e-13 71.2
MsG0280009717.01.T01 MTR_4g052620 30.519 154 76 6 2 149 1 129 2.18e-13 69.3
MsG0280009717.01.T01 MTR_4g075980 31.638 177 70 9 8 165 17 161 8.17e-13 68.2
MsG0280009717.01.T01 MTR_8g094580 30.357 168 87 7 87 230 7 168 1.41e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009717.01.T01 AT1G56010 48.127 347 108 14 1 312 14 323 8.60e-88 266
MsG0280009717.01.T01 AT3G12977 43.844 333 99 14 1 312 13 278 5.67e-70 219
MsG0280009717.01.T01 AT1G56010 49.807 259 90 11 86 312 6 256 4.28e-62 198
MsG0280009717.01.T01 AT3G12977 43.496 246 82 11 86 312 18 225 1.57e-44 152
MsG0280009717.01.T01 AT3G18400 44.199 181 55 5 2 165 1 152 3.35e-38 138
MsG0280009717.01.T01 AT5G61430 37.970 266 101 10 6 239 16 249 5.42e-38 138
MsG0280009717.01.T01 AT5G07680 34.756 328 142 11 6 305 3 286 1.30e-35 131
MsG0280009717.01.T01 AT5G07680 34.756 328 142 11 6 305 17 300 1.44e-35 131
MsG0280009717.01.T01 AT5G18270 32.188 320 148 12 6 286 21 310 1.43e-34 129
MsG0280009717.01.T01 AT5G18270 32.188 320 148 12 6 286 21 310 1.44e-34 129
MsG0280009717.01.T01 AT5G39610 39.224 232 85 10 6 215 20 217 3.03e-34 127
MsG0280009717.01.T01 AT4G28530 41.709 199 55 8 2 168 6 175 1.11e-33 127
MsG0280009717.01.T01 AT1G71930 39.779 181 67 7 1 165 4 158 6.88e-33 124
MsG0280009717.01.T01 AT1G71930 39.779 181 67 7 1 165 4 158 6.88e-33 124
MsG0280009717.01.T01 AT3G04060 33.942 274 123 9 6 250 20 264 9.61e-33 124
MsG0280009717.01.T01 AT1G76420 34.551 301 112 14 3 276 19 261 1.23e-32 124
MsG0280009717.01.T01 AT2G18060 37.104 221 92 9 1 200 4 198 1.44e-31 121
MsG0280009717.01.T01 AT2G18060 37.104 221 92 9 1 200 4 198 1.44e-31 121
MsG0280009717.01.T01 AT1G12260 32.812 320 135 14 4 277 5 290 2.47e-31 120
MsG0280009717.01.T01 AT3G29035 36.293 259 95 13 6 227 24 249 5.11e-31 119
MsG0280009717.01.T01 AT2G24430 39.560 182 62 6 3 165 13 165 8.96e-31 118
MsG0280009717.01.T01 AT2G24430 39.560 182 62 6 3 165 13 165 8.96e-31 118
MsG0280009717.01.T01 AT5G53950 41.489 188 59 8 6 171 17 175 1.94e-30 118
MsG0280009717.01.T01 AT1G12260 38.693 199 76 8 4 182 5 177 4.48e-30 118
MsG0280009717.01.T01 AT5G66300 39.674 184 68 7 6 172 12 169 6.02e-30 115
MsG0280009717.01.T01 AT4G36160 40.909 176 62 7 6 165 10 159 6.40e-30 117
MsG0280009717.01.T01 AT4G36160 40.909 176 62 7 6 165 10 159 6.40e-30 117
MsG0280009717.01.T01 AT4G36160 40.909 176 62 7 6 165 14 163 6.87e-30 117
MsG0280009717.01.T01 AT5G62380 40.449 178 64 6 4 165 5 156 3.41e-29 114
MsG0280009717.01.T01 AT5G62380 40.449 178 64 6 4 165 5 156 3.41e-29 114
MsG0280009717.01.T01 AT1G62700 38.389 211 82 9 4 198 5 183 6.04e-29 115
MsG0280009717.01.T01 AT1G62700 38.389 211 82 9 4 198 5 183 6.04e-29 115
MsG0280009717.01.T01 AT3G61910 37.436 195 65 8 3 166 8 176 1.67e-28 112
MsG0280009717.01.T01 AT1G33280 40.000 175 64 7 6 165 8 156 3.80e-28 111
MsG0280009717.01.T01 AT2G46770 37.629 194 64 8 3 165 13 180 4.19e-28 112
MsG0280009717.01.T01 AT3G15170 34.510 255 96 9 3 227 17 230 5.40e-28 110
MsG0280009717.01.T01 AT4G10350 39.326 178 64 7 6 165 9 160 1.19e-27 110
MsG0280009717.01.T01 AT1G79580 40.782 179 64 9 3 165 14 166 1.98e-27 110
MsG0280009717.01.T01 AT1G79580 40.782 179 64 9 3 165 14 166 1.98e-27 110
MsG0280009717.01.T01 AT1G79580 40.782 179 64 9 3 165 14 166 1.98e-27 110
MsG0280009717.01.T01 AT1G79580 40.782 179 64 9 3 165 14 166 1.98e-27 110
MsG0280009717.01.T01 AT1G79580 40.782 179 64 9 3 165 14 166 1.98e-27 110
MsG0280009717.01.T01 AT1G65910 37.705 183 69 7 1 165 1 156 3.37e-26 108
MsG0280009717.01.T01 AT4G35580 39.326 178 63 7 6 165 9 159 4.43e-26 108
MsG0280009717.01.T01 AT4G35580 39.326 178 63 7 6 165 9 159 4.79e-26 108
MsG0280009717.01.T01 AT4G35580 39.326 178 63 7 6 165 9 159 5.25e-26 108
MsG0280009717.01.T01 AT4G27410 34.973 183 89 6 1 165 9 179 1.28e-25 104
MsG0280009717.01.T01 AT3G17730 36.957 184 71 7 1 166 1 157 2.45e-25 102
MsG0280009717.01.T01 AT4G28530 36.559 186 46 6 2 168 6 138 2.90e-25 103
MsG0280009717.01.T01 AT1G54330 39.572 187 71 7 1 172 1 160 3.17e-25 103
MsG0280009717.01.T01 AT1G32770 34.529 223 89 9 3 194 13 209 4.36e-25 103
MsG0280009717.01.T01 AT4G27410 35.519 183 71 6 1 165 9 162 5.34e-25 102
MsG0280009717.01.T01 AT2G33480 36.111 180 65 6 5 167 14 160 6.22e-25 101
MsG0280009717.01.T01 AT5G17260 36.957 184 70 7 1 165 1 157 7.62e-25 104
MsG0280009717.01.T01 AT2G33480 35.714 182 65 6 5 167 14 162 1.27e-24 100
MsG0280009717.01.T01 AT3G03200 36.957 184 70 7 1 165 1 157 3.70e-24 102
MsG0280009717.01.T01 AT3G04070 34.500 200 72 7 4 173 8 178 8.39e-24 100
MsG0280009717.01.T01 AT3G15500 34.737 190 76 7 1 172 9 168 1.20e-23 99.0
MsG0280009717.01.T01 AT5G61430 38.798 183 79 7 87 239 7 186 1.46e-23 98.2
MsG0280009717.01.T01 AT5G13180 34.973 183 66 8 5 167 13 162 4.58e-23 96.3
MsG0280009717.01.T01 AT4G17980 33.023 215 88 8 1 186 1 188 6.66e-23 95.9
MsG0280009717.01.T01 AT1G52890 34.737 190 76 7 1 172 9 168 7.20e-23 97.1
MsG0280009717.01.T01 AT1G33060 30.769 260 116 11 6 232 24 252 7.73e-23 99.4
MsG0280009717.01.T01 AT1G33060 30.769 260 116 11 6 232 24 252 8.06e-23 99.4
MsG0280009717.01.T01 AT1G01720 28.920 287 125 12 5 250 6 254 8.42e-23 96.3
MsG0280009717.01.T01 AT4G17980 34.419 215 85 9 1 186 1 188 9.40e-23 96.3
MsG0280009717.01.T01 AT3G04070 32.407 216 71 8 4 173 8 194 1.66e-22 96.7
MsG0280009717.01.T01 AT3G10490 31.837 245 102 10 2 227 23 221 1.85e-22 94.4
MsG0280009717.01.T01 AT1G61110 33.659 205 67 10 6 176 16 185 4.48e-22 94.7
MsG0280009717.01.T01 AT3G10480 35.545 211 81 11 6 191 27 207 1.06e-21 95.1
MsG0280009717.01.T01 AT3G10480 34.434 212 83 10 6 191 27 208 2.19e-21 94.4
MsG0280009717.01.T01 AT3G10490 36.788 193 73 9 2 175 23 185 2.35e-21 94.4
MsG0280009717.01.T01 AT5G46590 35.602 191 75 9 1 171 1 163 2.74e-21 92.0
MsG0280009717.01.T01 AT5G04410 37.778 180 65 9 6 166 9 160 1.09e-20 92.8
MsG0280009717.01.T01 AT1G77450 32.973 185 73 7 2 165 6 160 1.60e-20 89.4
MsG0280009717.01.T01 AT5G46590 39.860 143 55 6 1 139 1 116 1.84e-20 89.7
MsG0280009717.01.T01 AT3G10480 33.028 218 111 9 6 191 27 241 2.20e-20 91.7
MsG0280009717.01.T01 AT3G10500 37.222 180 66 9 6 166 9 160 2.34e-20 91.7
MsG0280009717.01.T01 AT1G69490 32.432 185 74 7 3 165 6 161 4.24e-20 88.6
MsG0280009717.01.T01 AT5G08790 33.333 186 71 7 3 165 4 159 1.18e-19 87.4
MsG0280009717.01.T01 AT5G63790 31.551 187 75 6 2 165 56 212 1.37e-18 85.1
MsG0280009717.01.T01 AT5G63790 31.551 187 75 6 2 165 46 202 1.38e-18 85.1
MsG0280009717.01.T01 AT5G39820 32.039 206 70 9 8 172 22 198 1.75e-18 85.1
MsG0280009717.01.T01 AT2G43000 30.374 214 97 8 3 194 16 199 2.99e-18 83.6
MsG0280009717.01.T01 AT5G24590 30.736 231 111 9 4 213 11 213 6.65e-18 84.3
MsG0280009717.01.T01 AT5G09330 33.929 168 78 6 1 162 1 141 1.25e-17 83.6
MsG0280009717.01.T01 AT5G09330 33.929 168 78 6 1 162 1 141 1.25e-17 83.6
MsG0280009717.01.T01 AT5G09330 33.929 168 78 6 1 162 1 141 1.25e-17 83.6
MsG0280009717.01.T01 AT5G09330 33.929 168 78 6 1 162 1 141 1.25e-17 83.6
MsG0280009717.01.T01 AT5G09330 33.929 168 78 6 1 162 1 141 1.25e-17 83.6
MsG0280009717.01.T01 AT3G49530 31.841 201 91 9 6 187 13 186 1.50e-16 80.1
MsG0280009717.01.T01 AT3G49530 33.333 183 76 9 6 169 13 168 2.31e-16 79.7
MsG0280009717.01.T01 AT1G52880 32.143 196 68 9 10 172 21 184 4.59e-16 77.8
MsG0280009717.01.T01 AT2G02450 37.778 135 51 5 8 138 53 158 4.61e-16 78.6
MsG0280009717.01.T01 AT2G02450 32.571 175 72 7 8 165 53 198 5.41e-16 78.2
MsG0280009717.01.T01 AT1G34180 33.537 164 82 8 8 161 18 164 9.00e-16 77.8
MsG0280009717.01.T01 AT1G34180 32.927 164 83 7 8 161 18 164 1.22e-15 77.8
MsG0280009717.01.T01 AT5G64060 31.351 185 80 7 1 166 1 157 1.39e-15 77.0
MsG0280009717.01.T01 AT1G34180 32.927 164 71 7 8 161 18 152 2.21e-15 76.6
MsG0280009717.01.T01 AT1G34180 32.927 164 71 7 8 161 18 152 2.57e-15 77.0
MsG0280009717.01.T01 AT1G34190 31.973 147 67 5 8 149 18 136 1.15e-14 74.7
MsG0280009717.01.T01 AT4G10350 43.478 92 36 3 90 165 22 113 1.24e-14 73.6
MsG0280009717.01.T01 AT2G27300 30.052 193 92 9 4 182 12 175 1.44e-13 70.9
MsG0280009717.01.T01 AT1G02230 25.197 254 145 7 7 244 4 228 2.38e-13 70.5
MsG0280009717.01.T01 AT2G33480 39.362 94 41 3 90 167 12 105 1.52e-11 63.2
MsG0280009717.01.T01 AT3G04420 26.047 215 113 8 7 204 4 189 3.57e-11 63.2
MsG0280009717.01.T01 AT3G04420 26.047 215 113 8 7 204 4 189 6.85e-11 62.8

Find 75 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGAGATGTCTTCTAATT+TGG 0.144030 2:-57076259 None:intergenic
TTCATCACTTCCAGCATTAA+TGG 0.146600 2:+57078178 MsG0280009717.01.T01:CDS
ATTAATGATCAAAACCTAAA+AGG 0.212913 2:+57078464 MsG0280009717.01.T01:CDS
TTGGAAGAGGATATGTATAT+TGG 0.280140 2:+57076283 MsG0280009717.01.T01:CDS
GTTCCATATTGGTTGTTATA+TGG 0.295352 2:-57078304 None:intergenic
TTGTTGGCTAGAGGTAATTT+TGG 0.309334 2:-57078326 None:intergenic
CAACCATATAACAACCAATA+TGG 0.320797 2:+57078301 MsG0280009717.01.T01:CDS
GTAGCCCTGTTGCATATTTA+CGG 0.328714 2:-57076922 None:intergenic
ACTTGCATTGTTGTTATTGT+TGG 0.333988 2:-57078342 None:intergenic
AACAACAATGCAAGTACATT+TGG 0.349859 2:+57078350 MsG0280009717.01.T01:CDS
CTTCGTAAGGGCACTCTTGT+TGG 0.373702 2:+57077001 MsG0280009717.01.T01:CDS
GATAAAGGGTCTAAGCTATA+AGG 0.378533 2:-57078380 None:intergenic
ATCGTGCAACTGCAGGTTAT+TGG 0.381979 2:+57076951 MsG0280009717.01.T01:CDS
GGTTGTAGATTGGGTTGGTT+TGG 0.395494 2:-57078283 None:intergenic
TTGTTATATGGTTGTAGATT+GGG 0.402170 2:-57078292 None:intergenic
GTTGTTATATGGTTGTAGAT+TGG 0.403136 2:-57078293 None:intergenic
AGAGACCGTAAATATGCAAC+AGG 0.409929 2:+57076917 MsG0280009717.01.T01:CDS
TTGTGTATATACAGGAAGAT+TGG 0.410383 2:+57078072 MsG0280009717.01.T01:intron
TTAGAAGACATCTCAACAAT+TGG 0.412084 2:+57076264 MsG0280009717.01.T01:CDS
TGTGTATATACAGGAAGATT+GGG 0.427064 2:+57078073 MsG0280009717.01.T01:intron
TGTGAGCCATGGGATATTCC+TGG 0.431452 2:+57074009 MsG0280009717.01.T01:CDS
TGGAAGAGGATATGTATATT+GGG 0.435017 2:+57076284 MsG0280009717.01.T01:CDS
TTGAGAAAACATGGAGAAGC+AGG 0.435570 2:-57078258 None:intergenic
TTAATGATCAAAACCTAAAA+GGG 0.436538 2:+57078465 MsG0280009717.01.T01:CDS
CCCATGGCTCACACTTGTTA+AGG 0.440925 2:-57073999 None:intergenic
CTTGCTCATATTCATCTGTA+TGG 0.443475 2:-57078232 None:intergenic
GTCAACATCAATCATGAGAA+AGG 0.483380 2:-57073977 None:intergenic
TGCTACAAAACCTCCAAGCA+TGG 0.497760 2:+57078130 MsG0280009717.01.T01:CDS
TGAGAGTTACTTATCTGAAG+TGG 0.505837 2:+57078517 MsG0280009717.01.T01:CDS
CATCTGTATGGAATTGAGCT+TGG 0.508894 2:-57078220 None:intergenic
ACTTTAGTGTTCTATCAAGA+AGG 0.510502 2:+57077034 MsG0280009717.01.T01:CDS
AAAGGGTCATCACCAAGCTT+AGG 0.523339 2:+57078482 MsG0280009717.01.T01:CDS
GAACAGAGCTATCCTTCGTA+AGG 0.527746 2:+57076988 MsG0280009717.01.T01:CDS
AACAATGCAAGTACATTTGG+AGG 0.528454 2:+57078353 MsG0280009717.01.T01:CDS
ATGTAAGAATCCATTAATGC+TGG 0.533005 2:-57078188 None:intergenic
TCATAGCAACTACCCATGCT+TGG 0.533828 2:-57078143 None:intergenic
GAACTTCCTTCACCTAAGCT+TGG 0.537127 2:-57078494 None:intergenic
CCTTAACAAGTGTGAGCCAT+GGG 0.539747 2:+57073999 MsG0280009717.01.T01:CDS
CACACAAGCTCTTCATCTCT+AGG 0.541777 2:-57073919 None:intergenic
TAGCAACTACCCATGCTTGG+AGG 0.547765 2:-57078140 None:intergenic
GAGAGTTACTTATCTGAAGT+GGG 0.548125 2:+57078518 MsG0280009717.01.T01:CDS
TCTATCAAGAAGGGCACCTA+AGG 0.549775 2:+57077044 MsG0280009717.01.T01:CDS
CGCACAAATCGTGCAACTGC+AGG 0.550082 2:+57076944 MsG0280009717.01.T01:CDS
GACATCTCAACAATTGGAAG+AGG 0.550491 2:+57076270 MsG0280009717.01.T01:CDS
TATATGGTTGTAGATTGGGT+TGG 0.552281 2:-57078288 None:intergenic
GAGTAACATAAGCATGGTTG+AGG 0.554745 2:+57073867 None:intergenic
TTAGAAATTGTTCCACATGT+GGG 0.570954 2:-57078546 None:intergenic
TAGAAATTGTTCCACATGTG+GGG 0.571008 2:-57078545 None:intergenic
ATTAGAAATTGTTCCACATG+TGG 0.572291 2:-57078547 None:intergenic
CATGTGTGGGAGGGAAAGAG+TGG 0.573540 2:+57076878 MsG0280009717.01.T01:CDS
CTTTAGTGTTCTATCAAGAA+GGG 0.573646 2:+57077035 MsG0280009717.01.T01:CDS
ACCTTAACAAGTGTGAGCCA+TGG 0.592225 2:+57073998 MsG0280009717.01.T01:CDS
TGCAGGTTATTGGAAGGCAC+AGG 0.593187 2:+57076961 MsG0280009717.01.T01:CDS
GCTACAAAACCTCCAAGCAT+GGG 0.600781 2:+57078131 MsG0280009717.01.T01:CDS
GTTGAGGCAAAGCTACCACC+AGG 0.601916 2:+57073883 MsG0280009717.01.T01:CDS
GTGTGATTACTTGATGAAGA+AGG 0.603211 2:+57073939 MsG0280009717.01.T01:CDS
CAGAAGCAGCATGTGTGGGA+GGG 0.608897 2:+57076869 MsG0280009717.01.T01:intron
TGCAACTGCAGGTTATTGGA+AGG 0.610373 2:+57076955 MsG0280009717.01.T01:CDS
TACTAACCAGGAATATCCCA+TGG 0.624451 2:-57074015 None:intergenic
GTTATTGGAAGGCACAGGAA+AGG 0.628018 2:+57076966 MsG0280009717.01.T01:CDS
TCATCACCAAGCTTAGGTGA+AGG 0.632923 2:+57078488 MsG0280009717.01.T01:CDS
AACAGAGCTATCCTTCGTAA+GGG 0.632999 2:+57076989 MsG0280009717.01.T01:CDS
TTGTTGTTATTGTTGGCTAG+AGG 0.638919 2:-57078335 None:intergenic
TGAGAAAACATGGAGAAGCA+GGG 0.639023 2:-57078257 None:intergenic
TGGTGCAGAAGCAGCATGTG+TGG 0.640885 2:+57076864 MsG0280009717.01.T01:intron
GCAGAAGCAGCATGTGTGGG+AGG 0.644425 2:+57076868 MsG0280009717.01.T01:intron
CTAGGATGAAATCTGAACCC+TGG 0.649291 2:-57073901 None:intergenic
CAACAAGAGTGCCCTTACGA+AGG 0.654867 2:-57077000 None:intergenic
GGTAGTTGCTATGATGACAC+AGG 0.669164 2:+57078152 MsG0280009717.01.T01:CDS
AAGTGGGTATGCCCCACATG+TGG 0.670092 2:+57078534 MsG0280009717.01.T01:CDS
GGTGCAGAAGCAGCATGTGT+GGG 0.686440 2:+57076865 MsG0280009717.01.T01:intron
ATGTGTGGGAGGGAAAGAGT+GGG 0.688471 2:+57076879 MsG0280009717.01.T01:CDS
GGATGAAATCTGAACCCTGG+TGG 0.692300 2:-57073898 None:intergenic
GAGACCGTAAATATGCAACA+GGG 0.746982 2:+57076918 MsG0280009717.01.T01:CDS
TTGAGGCAAAGCTACCACCA+GGG 0.776299 2:+57073884 MsG0280009717.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATAAATAAAAATATA+TGG + Chr2:57075014-57075033 MsG0280009717.01.T01:intron 0.0%
!!! AAAAATTTTTAATTAATTAA+GGG - Chr2:57075276-57075295 None:intergenic 0.0%
!!! ATTAATTAAAAATTTTTATT+TGG + Chr2:57075279-57075298 MsG0280009717.01.T01:intron 0.0%
!!! ATTTTTTTTATAAAAAATAA+TGG - Chr2:57075110-57075129 None:intergenic 0.0%
!!! TAAAAATTTTTAATTAATTA+AGG - Chr2:57075277-57075296 None:intergenic 0.0%
!! CAAAAAAAATATATATCAAA+TGG - Chr2:57076638-57076657 None:intergenic 10.0%
!!! AACAAATAGTTTTTTTTTAA+AGG - Chr2:57076723-57076742 None:intergenic 10.0%
!!! ACAAATAGTTTTTTTTTAAA+GGG - Chr2:57076722-57076741 None:intergenic 10.0%
!!! ATAAAAAAAAAGTATATCAT+CGG - Chr2:57075731-57075750 None:intergenic 10.0%
!!! TCTTTATTAAATTTTGATAA+GGG + Chr2:57074315-57074334 MsG0280009717.01.T01:intron 10.0%
!!! TTCTTTATTAAATTTTGATA+AGG + Chr2:57074314-57074333 MsG0280009717.01.T01:intron 10.0%
!! AAGACAGAAAAAAATAAATT+TGG + Chr2:57074730-57074749 MsG0280009717.01.T01:intron 15.0%
!! AAGATATAAAATAATACAAG+TGG - Chr2:57075938-57075957 None:intergenic 15.0%
!! AATAATTAAAATACAACACA+TGG - Chr2:57076139-57076158 None:intergenic 15.0%
!! ACCATATATGTTAAATTAAA+TGG + Chr2:57077837-57077856 MsG0280009717.01.T01:intron 15.0%
!! AGATTGACAAATAAAAATTA+AGG + Chr2:57077427-57077446 MsG0280009717.01.T01:intron 15.0%
!! AGTTATTATAGATCAATAAA+AGG - Chr2:57076542-57076561 None:intergenic 15.0%
!! ATAGTTATTAAAATAACACT+AGG + Chr2:57076801-57076820 MsG0280009717.01.T01:intron 15.0%
!! TAGTTATTAAAATAACACTA+GGG + Chr2:57076802-57076821 MsG0280009717.01.T01:intron 15.0%
!! TATAATTAGTGTAAAGAAAA+TGG - Chr2:57077314-57077333 None:intergenic 15.0%
!! TTACATACATAAATATGTAA+TGG + Chr2:57075806-57075825 MsG0280009717.01.T01:intron 15.0%
!! TTTCTTTACACTAATTATAT+TGG + Chr2:57077315-57077334 MsG0280009717.01.T01:intron 15.0%
!! TTTGTCAATTTAAATAGTTA+TGG + Chr2:57076033-57076052 MsG0280009717.01.T01:intron 15.0%
!!! AAAATTTTCTCATAAAGAAT+AGG + Chr2:57074142-57074161 MsG0280009717.01.T01:intron 15.0%
!!! AACAGTAATAATTTTGTTTA+TGG - Chr2:57076379-57076398 None:intergenic 15.0%
!!! ACCATTTAATTTAACATATA+TGG - Chr2:57077841-57077860 None:intergenic 15.0%
!!! ATTATGTAATGGAAATATAT+TGG + Chr2:57076844-57076863 MsG0280009717.01.T01:intron 15.0%
!!! GAATTTTTTTATATCAACAA+GGG + Chr2:57076055-57076074 MsG0280009717.01.T01:intron 15.0%
!!! GTTAATTTAATTTCCAATTA+AGG + Chr2:57074468-57074487 MsG0280009717.01.T01:intron 15.0%
!!! TGTATTATTTTATATCTTCA+AGG + Chr2:57075940-57075959 MsG0280009717.01.T01:intron 15.0%
!! AAATGAAAAAGAAACTGTTA+GGG + Chr2:57076232-57076251 MsG0280009717.01.T01:CDS 20.0%
!! AATATATATCAAATGGAACA+TGG - Chr2:57076631-57076650 None:intergenic 20.0%
!! ACTATCAAAGTCTTTATAAT+AGG - Chr2:57075329-57075348 None:intergenic 20.0%
!! ATACTTAGGATAAAATACAT+TGG + Chr2:57075052-57075071 MsG0280009717.01.T01:intron 20.0%
!! ATATAATCCAAAACTAGTTA+TGG - Chr2:57076197-57076216 None:intergenic 20.0%
!! ATATATATCAAATGGAACAT+GGG - Chr2:57076630-57076649 None:intergenic 20.0%
!! ATGTGACTTCAAAAATATAT+TGG + Chr2:57077521-57077540 MsG0280009717.01.T01:intron 20.0%
!! ATTAATGATCAAAACCTAAA+AGG + Chr2:57078464-57078483 MsG0280009717.01.T01:CDS 20.0%
!! ATTGAATGCATAAATGTAAA+TGG + Chr2:57075838-57075857 MsG0280009717.01.T01:intron 20.0%
!! ATTTAATTGTTTGCACAAAT+AGG - Chr2:57075903-57075922 None:intergenic 20.0%
!! CTTTCTAAACACAAATATAA+TGG - Chr2:57075618-57075637 None:intergenic 20.0%
!! GTTTAATAAAAAATTCAGAG+AGG - Chr2:57077566-57077585 None:intergenic 20.0%
!! TGCATATTCAATTAGAAAAA+TGG - Chr2:57074672-57074691 None:intergenic 20.0%
!! TGTGACTTCAAAAATATATT+GGG + Chr2:57077522-57077541 MsG0280009717.01.T01:intron 20.0%
!! TGTTCTAATAATTAAGACAA+AGG + Chr2:57076395-57076414 MsG0280009717.01.T01:intron 20.0%
!! TTAATGATCAAAACCTAAAA+GGG + Chr2:57078465-57078484 MsG0280009717.01.T01:CDS 20.0%
!! TTATCCAATCAAATATCAAA+AGG - Chr2:57077651-57077670 None:intergenic 20.0%
!! TTCGTTAATTGTTAACTATT+CGG - Chr2:57077938-57077957 None:intergenic 20.0%
!! TTCTTAGTCTAATTATGTAA+TGG + Chr2:57076833-57076852 MsG0280009717.01.T01:intron 20.0%
!!! ATTTAATTTCCAATTAAGGT+AGG + Chr2:57074472-57074491 MsG0280009717.01.T01:intron 20.0%
!!! GGAATTTTTTTATATCAACA+AGG + Chr2:57076054-57076073 MsG0280009717.01.T01:intron 20.0%
!!! TCATTTTGCAACATATTTTT+TGG + Chr2:57077357-57077376 MsG0280009717.01.T01:intron 20.0%
!!! TTAGGTTTTGATCATTAATA+GGG - Chr2:57078463-57078482 None:intergenic 20.0%
!!! TTTAGGTTTTGATCATTAAT+AGG - Chr2:57078464-57078483 None:intergenic 20.0%
! AACATGTCATGTGTATATAA+AGG - Chr2:57074087-57074106 None:intergenic 25.0%
! AATGAAAAAGAAACTGTTAG+GGG + Chr2:57076233-57076252 MsG0280009717.01.T01:CDS 25.0%
! ACTCATTTGTACTTTATCAA+TGG - Chr2:57074236-57074255 None:intergenic 25.0%
! AGTATATATCAGTTTCCATT+AGG - Chr2:57074642-57074661 None:intergenic 25.0%
! ATAGCAAACTGAAAAATTGA+TGG - Chr2:57074211-57074230 None:intergenic 25.0%
! ATATTGTTAATGAGGACAAT+TGG + Chr2:57076467-57076486 MsG0280009717.01.T01:intron 25.0%
! ATGTGAATTTAAGTAAGATG+AGG - Chr2:57076574-57076593 None:intergenic 25.0%
! CATATATAATAGAGATAGGT+AGG + Chr2:57074968-57074987 MsG0280009717.01.T01:intron 25.0%
! GAAATGAAAAAGAAACTGTT+AGG + Chr2:57076231-57076250 MsG0280009717.01.T01:CDS 25.0%
! GACAAAAATCATCTCAAATT+TGG - Chr2:57074759-57074778 None:intergenic 25.0%
! GTTATTCAATCAAAATCGAT+CGG + Chr2:57077732-57077751 MsG0280009717.01.T01:intron 25.0%
! GTTTGAACTTAGAGTTAAAT+TGG - Chr2:57077883-57077902 None:intergenic 25.0%
! TATCTCTATTATATATGCCT+GGG - Chr2:57074965-57074984 None:intergenic 25.0%
! TATTATTAATTCCTAATCCC+AGG + Chr2:57074945-57074964 MsG0280009717.01.T01:intron 25.0%
! TCAGGATAATATTGTTAATG+AGG + Chr2:57076459-57076478 MsG0280009717.01.T01:intron 25.0%
! TCCTAAAATTTCATCTTCTA+AGG + Chr2:57077118-57077137 MsG0280009717.01.T01:intron 25.0%
! TGATATTTGATTGGATAACT+CGG + Chr2:57077653-57077672 MsG0280009717.01.T01:intron 25.0%
! TGCCATACATTAAAATACAA+AGG - Chr2:57074921-57074940 None:intergenic 25.0%
! TTAATTGTTAACTATTCGGA+GGG - Chr2:57077934-57077953 None:intergenic 25.0%
! TTGTTATATGGTTGTAGATT+GGG - Chr2:57078295-57078314 None:intergenic 25.0%
! TTTGAGTCAACTATCAAAAA+TGG + Chr2:57078430-57078449 MsG0280009717.01.T01:CDS 25.0%
! TTTGGACAAAAATGACTATA+GGG + Chr2:57077277-57077296 MsG0280009717.01.T01:intron 25.0%
!! AAGACCTTTTGATATTTGAT+TGG + Chr2:57077644-57077663 MsG0280009717.01.T01:intron 25.0%
!! ACCTTAGAAGATGAAATTTT+AGG - Chr2:57077122-57077141 None:intergenic 25.0%
!! ACTTTTCTATCACATGATAA+AGG - Chr2:57078398-57078417 None:intergenic 25.0%
!! CTTTTCTATCACATGATAAA+GGG - Chr2:57078397-57078416 None:intergenic 25.0%
!! TACTGAAGCTTTTATAAAGT+AGG + Chr2:57076113-57076132 MsG0280009717.01.T01:intron 25.0%
!! TTAGAAGATGAAATTTTAGG+AGG - Chr2:57077119-57077138 None:intergenic 25.0%
!! TTTTGGACAAAAATGACTAT+AGG + Chr2:57077276-57077295 MsG0280009717.01.T01:intron 25.0%
!!! AATTTTGTTTATGGCAAAAC+AGG - Chr2:57076370-57076389 None:intergenic 25.0%
!!! AGAGTGAAATTTTTTTTTGC+TGG - Chr2:57075966-57075985 None:intergenic 25.0%
!!! AGCCTTTGTATTTTAATGTA+TGG + Chr2:57074916-57074935 MsG0280009717.01.T01:intron 25.0%
!!! ATTAAGGACTTTTGACTTTT+TGG + Chr2:57077443-57077462 MsG0280009717.01.T01:intron 25.0%
!!! ATTTTGTTTATGGCAAAACA+GGG - Chr2:57076369-57076388 None:intergenic 25.0%
!!! CTGTTATTTGTTTTGTAGAT+AGG - Chr2:57077621-57077640 None:intergenic 25.0%
!!! GTTTCTTTTTCATTTCATGA+TGG - Chr2:57076227-57076246 None:intergenic 25.0%
!!! TAGAAGATGAAATTTTAGGA+GGG - Chr2:57077118-57077137 None:intergenic 25.0%
!!! TCGATCTAATTTTTTCACAA+AGG - Chr2:57074846-57074865 None:intergenic 25.0%
!!! TTGTATTTTAATGTATGGCA+TGG + Chr2:57074921-57074940 MsG0280009717.01.T01:intron 25.0%
!!! TTTTTTAGGCTTGATATGAT+AGG + Chr2:57076086-57076105 MsG0280009717.01.T01:intron 25.0%
AAAGGAGAAAGAAATAAGTC+AGG + Chr2:57077213-57077232 MsG0280009717.01.T01:intron 30.0%
AACAACAATGCAAGTACATT+TGG + Chr2:57078350-57078369 MsG0280009717.01.T01:CDS 30.0%
ACTTTAGTGTTCTATCAAGA+AGG + Chr2:57077034-57077053 MsG0280009717.01.T01:CDS 30.0%
AGATTATAGCCTACCTTAAT+TGG - Chr2:57074484-57074503 None:intergenic 30.0%
AGTTAATCACGTTTATGTGT+AGG - Chr2:57075396-57075415 None:intergenic 30.0%
ATGTAAGAATCCATTAATGC+TGG - Chr2:57078191-57078210 None:intergenic 30.0%
CAAAACAAGTGTCATAGTTT+AGG - Chr2:57078020-57078039 None:intergenic 30.0%
CAAAAGGATTAAGTAAACTC+AGG + Chr2:57076441-57076460 MsG0280009717.01.T01:intron 30.0%
CAACCATATAACAACCAATA+TGG + Chr2:57078301-57078320 MsG0280009717.01.T01:CDS 30.0%
CAGGCATATATAATAGAGAT+AGG + Chr2:57074964-57074983 MsG0280009717.01.T01:intron 30.0%
CTATCTCTATTATATATGCC+TGG - Chr2:57074966-57074985 None:intergenic 30.0%
CTTTAGTGTTCTATCAAGAA+GGG + Chr2:57077035-57077054 MsG0280009717.01.T01:CDS 30.0%
GCATAATCTTGTGTATATAC+AGG + Chr2:57078064-57078083 MsG0280009717.01.T01:intron 30.0%
GTCATGAGCATTTAATCAAA+AGG + Chr2:57076425-57076444 MsG0280009717.01.T01:intron 30.0%
GTGCAAACAATTAAATCCAA+TGG + Chr2:57075907-57075926 MsG0280009717.01.T01:intron 30.0%
GTTAATTGTTAACTATTCGG+AGG - Chr2:57077935-57077954 None:intergenic 30.0%
GTTCAAGGATCAAAAGATTA+TGG - Chr2:57074564-57074583 None:intergenic 30.0%
GTTGTTATATGGTTGTAGAT+TGG - Chr2:57078296-57078315 None:intergenic 30.0%
TAGCTACGAAAATTTAGAGA+CGG - Chr2:57074787-57074806 None:intergenic 30.0%
TATTATATATGCCTGGGATT+AGG - Chr2:57074959-57074978 None:intergenic 30.0%
TCATAGCATTAATACTAACC+AGG - Chr2:57074030-57074049 None:intergenic 30.0%
TCTTTGACATGAAAGTAAGA+TGG - Chr2:57075489-57075508 None:intergenic 30.0%
TGATAAATGAAAGAGCCTAA+TGG + Chr2:57074624-57074643 MsG0280009717.01.T01:intron 30.0%
TGGAAGAGGATATGTATATT+GGG + Chr2:57076284-57076303 MsG0280009717.01.T01:CDS 30.0%
TGTGTATATACAGGAAGATT+GGG + Chr2:57078073-57078092 MsG0280009717.01.T01:intron 30.0%
TGTTGAGATGTCTTCTAATT+TGG - Chr2:57076262-57076281 None:intergenic 30.0%
TTAGAAATTGTTCCACATGT+GGG - Chr2:57078549-57078568 None:intergenic 30.0%
TTAGAAGACATCTCAACAAT+TGG + Chr2:57076264-57076283 MsG0280009717.01.T01:CDS 30.0%
TTGGAAGAGGATATGTATAT+TGG + Chr2:57076283-57076302 MsG0280009717.01.T01:CDS 30.0%
TTGTGTATATACAGGAAGAT+TGG + Chr2:57078072-57078091 MsG0280009717.01.T01:intron 30.0%
! AAAGGAATGCATGATAATGA+AGG - Chr2:57074069-57074088 None:intergenic 30.0%
! AAGGAATGCATGATAATGAA+GGG - Chr2:57074068-57074087 None:intergenic 30.0%
! ACTTGCATTGTTGTTATTGT+TGG - Chr2:57078345-57078364 None:intergenic 30.0%
! ATCTTTTGATCCTTGAACAA+TGG + Chr2:57074566-57074585 MsG0280009717.01.T01:intron 30.0%
! ATGTGAGACAAATTTGGTTT+CGG - Chr2:57077487-57077506 None:intergenic 30.0%
! GTTCCATATTGGTTGTTATA+TGG - Chr2:57078307-57078326 None:intergenic 30.0%
! GTTTTGTAGATAGGAGAATT+TGG - Chr2:57077612-57077631 None:intergenic 30.0%
!! AATACAAGTGGATTAACCAT+TGG - Chr2:57075926-57075945 None:intergenic 30.0%
!! ATTTTGATAAGGGTAGATTG+AGG + Chr2:57074325-57074344 MsG0280009717.01.T01:intron 30.0%
!!! AGGTAATTTTGGTTCCATAT+TGG - Chr2:57078318-57078337 None:intergenic 30.0%
!!! CAAGGGCAAAATAGTTTTTT+AGG + Chr2:57076072-57076091 MsG0280009717.01.T01:intron 30.0%
!!! TCCAATCTGCATTTTTTTGT+GGG + Chr2:57074878-57074897 MsG0280009717.01.T01:intron 30.0%
!!! TTCCAATCTGCATTTTTTTG+TGG + Chr2:57074877-57074896 MsG0280009717.01.T01:intron 30.0%
!!! TTTCGAGTTTTACATATTGC+TGG + Chr2:57075444-57075463 MsG0280009717.01.T01:intron 30.0%
AACAATGCAAGTACATTTGG+AGG + Chr2:57078353-57078372 MsG0280009717.01.T01:CDS 35.0%
AATTCAGAGAGGATCTACTT+AGG - Chr2:57077555-57077574 None:intergenic 35.0%
AATTTGTCTCACATGGCTAT+TGG + Chr2:57077493-57077512 MsG0280009717.01.T01:intron 35.0%
ACCCACAAAAAAATGCAGAT+TGG - Chr2:57074882-57074901 None:intergenic 35.0%
ACCTAAGGAGAAAAACTGAA+TGG + Chr2:57077059-57077078 MsG0280009717.01.T01:CDS 35.0%
AGAGAGACTTATCATTAGGA+GGG + Chr2:57075526-57075545 MsG0280009717.01.T01:intron 35.0%
ATAGCCATGTGAGACAAATT+TGG - Chr2:57077493-57077512 None:intergenic 35.0%
ATAGCTGTAACCATTGTTCA+AGG - Chr2:57074579-57074598 None:intergenic 35.0%
CATACCAGGAAAGTAATACA+AGG - Chr2:57077389-57077408 None:intergenic 35.0%
CTTGCTCATATTCATCTGTA+TGG - Chr2:57078235-57078254 None:intergenic 35.0%
GAAACCAAATTTGTCTCACA+TGG + Chr2:57077486-57077505 MsG0280009717.01.T01:intron 35.0%
GATAAAGGGTCTAAGCTATA+AGG - Chr2:57078383-57078402 None:intergenic 35.0%
GTCAACATCAATCATGAGAA+AGG - Chr2:57073980-57073999 None:intergenic 35.0%
GTGTGATTACTTGATGAAGA+AGG + Chr2:57073939-57073958 MsG0280009717.01.T01:CDS 35.0%
TAACTCTAAGTTCAAACCAG+TGG + Chr2:57077886-57077905 MsG0280009717.01.T01:intron 35.0%
TAATAGAGATAGGTAGGTAC+AGG + Chr2:57074974-57074993 MsG0280009717.01.T01:intron 35.0%
TACTTTCCTGGTATGAATGA+GGG + Chr2:57077394-57077413 MsG0280009717.01.T01:intron 35.0%
TAGAAATTGTTCCACATGTG+GGG - Chr2:57078548-57078567 None:intergenic 35.0%
TATATGGTTGTAGATTGGGT+TGG - Chr2:57078291-57078310 None:intergenic 35.0%
TGACTCGATGACCTTAATAT+GGG + Chr2:57077766-57077785 MsG0280009717.01.T01:intron 35.0%
TGAGAGTTACTTATCTGAAG+TGG + Chr2:57078517-57078536 MsG0280009717.01.T01:CDS 35.0%
TTACTTTCCTGGTATGAATG+AGG + Chr2:57077393-57077412 MsG0280009717.01.T01:intron 35.0%
TTCATCACTTCCAGCATTAA+TGG + Chr2:57078178-57078197 MsG0280009717.01.T01:CDS 35.0%
TTGAACAATGGTTACAGCTA+TGG + Chr2:57074578-57074597 MsG0280009717.01.T01:intron 35.0%
TTTGCATGAGTTTCGTATGA+GGG + Chr2:57077083-57077102 MsG0280009717.01.T01:intron 35.0%
! AAAAATGACTATAGGGCACT+TGG + Chr2:57077284-57077303 MsG0280009717.01.T01:intron 35.0%
! ACCATTCAGTTTTTCTCCTT+AGG - Chr2:57077063-57077082 None:intergenic 35.0%
! GAGAGTTACTTATCTGAAGT+GGG + Chr2:57078518-57078537 MsG0280009717.01.T01:CDS 35.0%
! GTTTTATATGCATGATCGTG+AGG + Chr2:57075570-57075589 MsG0280009717.01.T01:intron 35.0%
! TTGACTCGATGACCTTAATA+TGG + Chr2:57077765-57077784 MsG0280009717.01.T01:intron 35.0%
! TTGTTGTTATTGTTGGCTAG+AGG - Chr2:57078338-57078357 None:intergenic 35.0%
! TTTTGCATGAGTTTCGTATG+AGG + Chr2:57077082-57077101 MsG0280009717.01.T01:intron 35.0%
!! ATAGCCTTGTATTACTTTCC+TGG + Chr2:57077382-57077401 MsG0280009717.01.T01:intron 35.0%
!! GAAATCGCCATAACTAGTTT+TGG + Chr2:57076187-57076206 MsG0280009717.01.T01:intron 35.0%
!! TTGTTGGCTAGAGGTAATTT+TGG - Chr2:57078329-57078348 None:intergenic 35.0%
!!! GGTTTGGTTTTGAGAAAACA+TGG - Chr2:57078270-57078289 None:intergenic 35.0%
AACAGAGCTATCCTTCGTAA+GGG + Chr2:57076989-57077008 MsG0280009717.01.T01:CDS 40.0%
ACTGCACAATTGTACATGCA+GGG - Chr2:57074380-57074399 None:intergenic 40.0%
AGAGACCGTAAATATGCAAC+AGG + Chr2:57076917-57076936 MsG0280009717.01.T01:CDS 40.0%
ATTCGGAGGGATCTAAAGAA+GGG - Chr2:57077921-57077940 None:intergenic 40.0%
CATATACACATACACGCACA+TGG + Chr2:57075161-57075180 MsG0280009717.01.T01:intron 40.0%
CATCTGTATGGAATTGAGCT+TGG - Chr2:57078223-57078242 None:intergenic 40.0%
GAAAAAGAAACTGTTAGGGG+TGG + Chr2:57076236-57076255 MsG0280009717.01.T01:CDS 40.0%
GACATCTCAACAATTGGAAG+AGG + Chr2:57076270-57076289 MsG0280009717.01.T01:CDS 40.0%
GACTCGATGACCTTAATATG+GGG + Chr2:57077767-57077786 MsG0280009717.01.T01:intron 40.0%
GAGACCGTAAATATGCAACA+GGG + Chr2:57076918-57076937 MsG0280009717.01.T01:CDS 40.0%
GAGAGAGACTTATCATTAGG+AGG + Chr2:57075525-57075544 MsG0280009717.01.T01:intron 40.0%
GATGGACATAGACTGTAGTT+TGG - Chr2:57075471-57075490 None:intergenic 40.0%
GCTGAGAGAGACTTATCATT+AGG + Chr2:57075522-57075541 MsG0280009717.01.T01:intron 40.0%
GTAGCCCTGTTGCATATTTA+CGG - Chr2:57076925-57076944 None:intergenic 40.0%
TACTAACCAGGAATATCCCA+TGG - Chr2:57074018-57074037 None:intergenic 40.0%
TATTCGGAGGGATCTAAAGA+AGG - Chr2:57077922-57077941 None:intergenic 40.0%
TGAGAAAACATGGAGAAGCA+GGG - Chr2:57078260-57078279 None:intergenic 40.0%
TTGAGAAAACATGGAGAAGC+AGG - Chr2:57078261-57078280 None:intergenic 40.0%
TTGTACATGCAGGGGATTAT+AGG - Chr2:57074371-57074390 None:intergenic 40.0%
!! AGGAAGATTGGGTTTTGTGT+AGG + Chr2:57078084-57078103 MsG0280009717.01.T01:intron 40.0%
!! GGAAGATTGGGTTTTGTGTA+GGG + Chr2:57078085-57078104 MsG0280009717.01.T01:intron 40.0%
AAAGGGTCATCACCAAGCTT+AGG + Chr2:57078482-57078501 MsG0280009717.01.T01:CDS 45.0%
AATCCCACCACCCCATATTA+AGG - Chr2:57077780-57077799 None:intergenic 45.0%
ACACATACACGCACATGGAA+AGG + Chr2:57075166-57075185 MsG0280009717.01.T01:intron 45.0%
ACCTTAACAAGTGTGAGCCA+TGG + Chr2:57073998-57074017 MsG0280009717.01.T01:CDS 45.0%
AGAAGGGACAAATGTTCCAC+TGG - Chr2:57077905-57077924 None:intergenic 45.0%
ATCGTGCAACTGCAGGTTAT+TGG + Chr2:57076951-57076970 MsG0280009717.01.T01:CDS 45.0%
ATGACCTTAATATGGGGTGG+TGG + Chr2:57077773-57077792 MsG0280009717.01.T01:intron 45.0%
CACACAAGCTCTTCATCTCT+AGG - Chr2:57073922-57073941 None:intergenic 45.0%
CACATACACGCACATGGAAA+GGG + Chr2:57075167-57075186 MsG0280009717.01.T01:intron 45.0%
CACTGCACAATTGTACATGC+AGG - Chr2:57074381-57074400 None:intergenic 45.0%
CCTTAACAAGTGTGAGCCAT+GGG + Chr2:57073999-57074018 MsG0280009717.01.T01:CDS 45.0%
CTAGGATGAAATCTGAACCC+TGG - Chr2:57073904-57073923 None:intergenic 45.0%
CTGCACAATTGTACATGCAG+GGG - Chr2:57074379-57074398 None:intergenic 45.0%
GAAAGGGATGTAGACAGTTG+AGG + Chr2:57075183-57075202 MsG0280009717.01.T01:intron 45.0%
GAACAGAGCTATCCTTCGTA+AGG + Chr2:57076988-57077007 MsG0280009717.01.T01:CDS 45.0%
GAACTTCCTTCACCTAAGCT+TGG - Chr2:57078497-57078516 None:intergenic 45.0%
GCTACAAAACCTCCAAGCAT+GGG + Chr2:57078131-57078150 MsG0280009717.01.T01:CDS 45.0%
GGTAGTTGCTATGATGACAC+AGG + Chr2:57078152-57078171 MsG0280009717.01.T01:CDS 45.0%
TAGAGATAGGTAGGTACAGG+TGG + Chr2:57074977-57074996 MsG0280009717.01.T01:intron 45.0%
TCATAGCAACTACCCATGCT+TGG - Chr2:57078146-57078165 None:intergenic 45.0%
TCATCACCAAGCTTAGGTGA+AGG + Chr2:57078488-57078507 MsG0280009717.01.T01:CDS 45.0%
TCGATGACCTTAATATGGGG+TGG + Chr2:57077770-57077789 MsG0280009717.01.T01:intron 45.0%
TGACCTTAATATGGGGTGGT+GGG + Chr2:57077774-57077793 MsG0280009717.01.T01:intron 45.0%
TGCAACTGCAGGTTATTGGA+AGG + Chr2:57076955-57076974 MsG0280009717.01.T01:CDS 45.0%
TGCTACAAAACCTCCAAGCA+TGG + Chr2:57078130-57078149 MsG0280009717.01.T01:CDS 45.0%
TTTCCTGGTATGAATGAGGG+AGG + Chr2:57077397-57077416 MsG0280009717.01.T01:intron 45.0%
! GTTATTGGAAGGCACAGGAA+AGG + Chr2:57076966-57076985 MsG0280009717.01.T01:CDS 45.0%
!! GAAATTTTAGGAGGGCCATG+AGG - Chr2:57077110-57077129 None:intergenic 45.0%
!! GGTTGTAGATTGGGTTGGTT+TGG - Chr2:57078286-57078305 None:intergenic 45.0%
!! TCTATCAAGAAGGGCACCTA+AGG + Chr2:57077044-57077063 MsG0280009717.01.T01:CDS 45.0%
!!! AGCTTGGTGATGACCCTTTT+AGG - Chr2:57078481-57078500 None:intergenic 45.0%
!! AAATAATATTATTTATACTT+AGG + Chr2:57075038-57075057 MsG0280009717.01.T01:intron 5.0%
!!! AAAATTTTTAATTAATTAAG+GGG - Chr2:57075275-57075294 None:intergenic 5.0%
!!! TATTTTATAAATACTATTAA+AGG + Chr2:57077195-57077214 MsG0280009717.01.T01:intron 5.0%
!!! TTCTTTTTTATAAATATTTT+TGG + Chr2:57077259-57077278 MsG0280009717.01.T01:intron 5.0%
ATGTGTGGGAGGGAAAGAGT+GGG + Chr2:57076879-57076898 MsG0280009717.01.T01:CDS 50.0%
GGATGAAATCTGAACCCTGG+TGG - Chr2:57073901-57073920 None:intergenic 50.0%
GTTTCGTATGAGGGTCCTCA+TGG + Chr2:57077092-57077111 MsG0280009717.01.T01:intron 50.0%
TAGCAACTACCCATGCTTGG+AGG - Chr2:57078143-57078162 None:intergenic 50.0%
TGTGAGCCATGGGATATTCC+TGG + Chr2:57074009-57074028 MsG0280009717.01.T01:CDS 50.0%
TTGAGGCAAAGCTACCACCA+GGG + Chr2:57073884-57073903 MsG0280009717.01.T01:CDS 50.0%
TTGCCTCCCTCATTCATACC+AGG - Chr2:57077403-57077422 None:intergenic 50.0%
! CCCATGGCTCACACTTGTTA+AGG - Chr2:57074002-57074021 None:intergenic 50.0%
! TGCAGGTTATTGGAAGGCAC+AGG + Chr2:57076961-57076980 MsG0280009717.01.T01:CDS 50.0%
!! CAACAAGAGTGCCCTTACGA+AGG - Chr2:57077003-57077022 None:intergenic 50.0%
!! CTTCGTAAGGGCACTCTTGT+TGG + Chr2:57077001-57077020 MsG0280009717.01.T01:CDS 50.0%
AAGTGGGTATGCCCCACATG+TGG + Chr2:57078534-57078553 MsG0280009717.01.T01:CDS 55.0%
CAGAAGCAGCATGTGTGGGA+GGG + Chr2:57076869-57076888 MsG0280009717.01.T01:intron 55.0%
CATGTGTGGGAGGGAAAGAG+TGG + Chr2:57076878-57076897 MsG0280009717.01.T01:CDS 55.0%
CGCACAAATCGTGCAACTGC+AGG + Chr2:57076944-57076963 MsG0280009717.01.T01:CDS 55.0%
GGTGCAGAAGCAGCATGTGT+GGG + Chr2:57076865-57076884 MsG0280009717.01.T01:intron 55.0%
GTTGAGGCAAAGCTACCACC+AGG + Chr2:57073883-57073902 MsG0280009717.01.T01:CDS 55.0%
TGGTGCAGAAGCAGCATGTG+TGG + Chr2:57076864-57076883 MsG0280009717.01.T01:intron 55.0%
GCAGAAGCAGCATGTGTGGG+AGG + Chr2:57076868-57076887 MsG0280009717.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 57073880 57078568 57073880 ID=MsG0280009717.01;Name=MsG0280009717.01
Chr2 mRNA 57073880 57078568 57073880 ID=MsG0280009717.01.T01;Parent=MsG0280009717.01;Name=MsG0280009717.01.T01;_AED=0.49;_eAED=0.54;_QI=0|0|0|1|1|1|4|0|314
Chr2 exon 57073880 57074030 57073880 ID=MsG0280009717.01.T01:exon:38314;Parent=MsG0280009717.01.T01
Chr2 exon 57076220 57076305 57076220 ID=MsG0280009717.01.T01:exon:38315;Parent=MsG0280009717.01.T01
Chr2 exon 57076872 57077096 57076872 ID=MsG0280009717.01.T01:exon:38316;Parent=MsG0280009717.01.T01
Chr2 exon 57078086 57078568 57078086 ID=MsG0280009717.01.T01:exon:38317;Parent=MsG0280009717.01.T01
Chr2 CDS 57073880 57074030 57073880 ID=MsG0280009717.01.T01:cds;Parent=MsG0280009717.01.T01
Chr2 CDS 57076220 57076305 57076220 ID=MsG0280009717.01.T01:cds;Parent=MsG0280009717.01.T01
Chr2 CDS 57076872 57077096 57076872 ID=MsG0280009717.01.T01:cds;Parent=MsG0280009717.01.T01
Chr2 CDS 57078086 57078568 57078086 ID=MsG0280009717.01.T01:cds;Parent=MsG0280009717.01.T01
Gene Sequence

>MsG0280009717.01.T01

ATGGTTGAGGCAAAGCTACCACCAGGGTTCAGATTTCATCCTAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTGACTCATAGTGATTCCTTTCTCATGATTGATGTTGACCTTAACAAGTGTGAGCCATGGGATATTCCTGCATGCCATCATGAAATGAAAAAGAAACTGTTAGGGGTGGCCAAATTAGAAGACATCTCAACAATTGGAAGAGGATATGTATATTGGAAGCAGCATGTGTGGGAGGGAAAGAGTGGGTATTTCTATACACAGAGAGACCGTAAATATGCAACAGGGCTACGCACAAATCGTGCAACTGCAGGTTATTGGAAGGCACAGGAAAGGAACAGAGCTATCCTTCGTAAGGGCACTCTTGTTGGAATGAGAAAGACTTTAGTGTTCTATCAAGAAGGGCACCTAAGGAGAAAAACTGAATGGTTTTGCATGAGTTTCGAAGATTGGGTTTTGTGTAGGGTGTTCTACAAAAACAGAGAAGTTGCTACAAAACCTCCAAGCATGGGTAGTTGCTATGATGACACAGGCTCTTCATCACTTCCAGCATTAATGGATTCTTACATAAGTTTTGACCAAGCTCAATTCCATACAGATGAATATGAGCAAGTGCCCTGCTTCTCCATGTTTTCTCAAAACCAAACCAACCCAATCTACAACCATATAACAACCAATATGGAACCAAAATTACCTCTAGCCAACAATAACAACAATGCAAGTACATTTGGAGGAGCACCTTATAGCTTAGACCCTTTATCATGTGATAGAAAAGTGTTGAAAGCTGTTTTGAGTCAACTATCAAAAATGGAAAGAAACCCTATTAATGATCAAAACCTAAAAGGGTCATCACCAAGCTTAGGTGAAGGAAGTTCTGAGAGTTACTTATCTGAAGTGGGTATGCCCCACATGTGGAACAATTTCTAA

Protein sequence

>MsG0280009717.01.T01

MVEAKLPPGFRFHPRDEELVCDYLMKKVTHSDSFLMIDVDLNKCEPWDIPACHHEMKKKLLGVAKLEDISTIGRGYVYWKQHVWEGKSGYFYTQRDRKYATGLRTNRATAGYWKAQERNRAILRKGTLVGMRKTLVFYQEGHLRRKTEWFCMSFEDWVLCRVFYKNREVATKPPSMGSCYDDTGSSSLPALMDSYISFDQAQFHTDEYEQVPCFSMFSQNQTNPIYNHITTNMEPKLPLANNNNNASTFGGAPYSLDPLSCDRKVLKAVLSQLSKMERNPINDQNLKGSSPSLGEGSSESYLSEVGMPHMWNNF*