AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024407.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024407.01.T01 MTR_5g010620 100.000 270 0 0 1 270 33 302 0.0 556
MsG0580024407.01.T01 MTR_5g010620 100.000 270 0 0 1 270 1 270 0.0 555
MsG0580024407.01.T01 MTR_8g096950 75.445 281 55 2 1 267 1 281 5.99e-154 430
MsG0580024407.01.T01 MTR_7g055620 49.558 113 31 4 6 118 171 257 2.19e-19 87.0
MsG0580024407.01.T01 MTR_0411s0050 59.649 57 23 0 75 131 15 71 2.91e-19 80.5
MsG0580024407.01.T01 MTR_3g110015 60.000 80 18 2 6 71 6 85 3.26e-19 80.5
MsG0580024407.01.T01 MTR_3g109978 60.000 80 18 2 6 71 97 176 3.56e-18 80.1
MsG0580024407.01.T02 MTR_5g010620 100.000 270 0 0 1 270 33 302 0.0 556
MsG0580024407.01.T02 MTR_5g010620 100.000 270 0 0 1 270 1 270 0.0 555
MsG0580024407.01.T02 MTR_8g096950 75.445 281 55 2 1 267 1 281 5.99e-154 430
MsG0580024407.01.T02 MTR_7g055620 49.558 113 31 4 6 118 171 257 2.19e-19 87.0
MsG0580024407.01.T02 MTR_0411s0050 59.649 57 23 0 75 131 15 71 2.91e-19 80.5
MsG0580024407.01.T02 MTR_3g110015 60.000 80 18 2 6 71 6 85 3.26e-19 80.5
MsG0580024407.01.T02 MTR_3g109978 60.000 80 18 2 6 71 97 176 3.56e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024407.01.T01 AT4G20330 64.912 285 82 4 1 270 1 282 9.89e-122 349
MsG0580024407.01.T01 AT4G21010 55.036 278 110 6 1 266 1 275 1.26e-93 277
MsG0580024407.01.T02 AT4G20330 64.912 285 82 4 1 270 1 282 9.89e-122 349
MsG0580024407.01.T02 AT4G21010 55.036 278 110 6 1 266 1 275 1.26e-93 277

Find 19 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATGTATTGAAACTTTCT+TGG 0.207227 5:+4417010 None:intergenic
TTCAAATCAATTCAATTTCT+AGG 0.222859 5:+4416911 None:intergenic
TTGACCGGAGCAAGAGCATT+TGG 0.376765 5:+4416780 None:intergenic
GTGATCGGAAAGGGTGAAAA+GGG 0.386940 5:+4417110 None:intergenic
CGCTTCATTTGAGCTCCAAC+AGG 0.397843 5:+4416705 None:intergenic
ATCGAGAAAGTAATAATAAT+CGG 0.404720 5:+4417180 None:intergenic
TCAAATCAATTCAATTTCTA+GGG 0.444162 5:+4416912 None:intergenic
TGTGATCGGAAAGGGTGAAA+AGG 0.462662 5:+4417109 None:intergenic
GAAATTCAGATGGCGTTACA+AGG 0.505735 5:-4416891 MsG0580024407.01.T02:exon
TGTGCCAAATGCTCTTGCTC+CGG 0.535916 5:-4416784 MsG0580024407.01.T02:CDS
ATCAAGCATAGCAGCAAACA+AGG 0.552309 5:-4416820 MsG0580024407.01.T02:CDS
GAATTGATTTGAAATTCAGA+TGG 0.557563 5:-4416901 MsG0580024407.01.T02:exon
AGAACAATTCAATCAAAGAG+AGG 0.558094 5:+4417067 None:intergenic
ATGTTGAAGTCTCTCTGTAT+CGG 0.571558 5:+4416749 None:intergenic
GAACAATTCAATCAAAGAGA+GGG 0.572431 5:+4417068 None:intergenic
AGTATTCGTAAAGCTCCTGT+TGG 0.575171 5:-4416720 MsG0580024407.01.T02:CDS
GTATCGGTCGAAAATTTGAC+CGG 0.607296 5:+4416765 None:intergenic
ATCTGTGACGAACTCAATCA+CGG 0.613812 5:-4417262 MsG0580024407.01.T02:five_prime_UTR
TGATCGGAAAGGGTGAAAAG+GGG 0.617918 5:+4417111 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATATAATAGACAAATA+TGG - Chr5:4415594-4415613 MsG0580024407.01.T02:intron 10.0%
!! TTCTAATAATATTTATAAGA+TGG + Chr5:4414228-4414247 None:intergenic 10.0%
!!! ATTAATACTTTTTATATAAC+CGG + Chr5:4414165-4414184 None:intergenic 10.0%
!!! TTATATTTGTTTAAGTTATA+GGG + Chr5:4415951-4415970 None:intergenic 10.0%
!!! TTTATATTTGTTTAAGTTAT+AGG + Chr5:4415952-4415971 None:intergenic 10.0%
!! AACTTATATTTATATTGTTG+TGG + Chr5:4415655-4415674 None:intergenic 15.0%
!! ATAAAAATAATATCAACTTG+TGG + Chr5:4412417-4412436 None:intergenic 15.0%
!! TAAAAATAATATCAACTTGT+GGG + Chr5:4412416-4412435 None:intergenic 15.0%
!! TCAAAATTTAGGTATATAAT+TGG - Chr5:4416365-4416384 MsG0580024407.01.T02:intron 15.0%
!! TTTATAAAAGTTGAACTATA+TGG - Chr5:4414486-4414505 MsG0580024407.01.T02:intron 15.0%
!! TTTATGATTATGAATACTTT+GGG - Chr5:4412432-4412451 MsG0580024407.01.T02:CDS 15.0%
!!! GGTTATATAAAAAGTATTAA+TGG - Chr5:4414164-4414183 MsG0580024407.01.T02:intron 15.0%
!!! TTAATACTTTTTATATAACC+GGG + Chr5:4414164-4414183 None:intergenic 15.0%
!!! TTATTGGTTAATATTTATGT+TGG + Chr5:4416166-4416185 None:intergenic 15.0%
!!! TTTTATGATTATGAATACTT+TGG - Chr5:4412431-4412450 MsG0580024407.01.T02:CDS 15.0%
!!! TTTTATTTCTTCTTTATGTT+TGG + Chr5:4414365-4414384 None:intergenic 15.0%
!! AAACAAGATTCTTAAGTAAA+AGG - Chr5:4416986-4417005 MsG0580024407.01.T02:five_prime_UTR 20.0%
!! AAATAGTAGTATAAAAGAAG+AGG + Chr5:4415147-4415166 None:intergenic 20.0%
!! AACAAGATTCTTAAGTAAAA+GGG - Chr5:4416987-4417006 MsG0580024407.01.T02:five_prime_UTR 20.0%
!! AGTCTATACTTATATATTGA+TGG - Chr5:4415889-4415908 MsG0580024407.01.T02:intron 20.0%
!! ATAATAAAGATATATCCTTC+TGG + Chr5:4416861-4416880 None:intergenic 20.0%
!! ATAATATTTATAAGATGGCA+TGG + Chr5:4414223-4414242 None:intergenic 20.0%
!! ATCGAGAAAGTAATAATAAT+CGG + Chr5:4411870-4411889 None:intergenic 20.0%
!! TAATATTTATAAGATGGCAT+GGG + Chr5:4414222-4414241 None:intergenic 20.0%
!! TACCTCATTAATATAGTATT+TGG + Chr5:4414617-4414636 None:intergenic 20.0%
!! TATCAAAAACCTAGATATTA+AGG - Chr5:4412633-4412652 MsG0580024407.01.T02:intron 20.0%
!! TCAAATCAATTCAATTTCTA+GGG + Chr5:4412138-4412157 None:intergenic 20.0%
!! TTCAAATCAATTCAATTTCT+AGG + Chr5:4412139-4412158 None:intergenic 20.0%
!! TTGTATGTGATGTATAAATA+TGG - Chr5:4414757-4414776 MsG0580024407.01.T02:intron 20.0%
!! TTTAAACGAACAAAATTGTT+TGG - Chr5:4414586-4414605 MsG0580024407.01.T02:intron 20.0%
!!! AAAGCTTTTATTTTCTTTGT+TGG + Chr5:4414427-4414446 None:intergenic 20.0%
!!! ACTTTTATATGCAAAATCAA+TGG + Chr5:4412083-4412102 None:intergenic 20.0%
!!! ATTTCATTCTTCTTTTTCTT+AGG + Chr5:4416682-4416701 None:intergenic 20.0%
!!! CTTCTTTTATACTACTATTT+TGG - Chr5:4415147-4415166 MsG0580024407.01.T02:intron 20.0%
!!! CTTGGTTTTAAAAAAAACAA+GGG - Chr5:4412915-4412934 MsG0580024407.01.T02:intron 20.0%
!!! CTTTTATATGCAAAATCAAT+GGG + Chr5:4412082-4412101 None:intergenic 20.0%
!!! TCAAAATGATCAATTTTTCT+AGG + Chr5:4412111-4412130 None:intergenic 20.0%
!!! TGAAATTTGATTTTTGTGAT+CGG + Chr5:4411955-4411974 None:intergenic 20.0%
!!! TTGTATTTTCTTAATAGACT+CGG - Chr5:4414929-4414948 MsG0580024407.01.T02:intron 20.0%
!!! TTTTATATGCAAAATCAATG+GGG + Chr5:4412081-4412100 None:intergenic 20.0%
! AAAAAGCCTAAGTTGTATAT+AGG - Chr5:4413719-4413738 MsG0580024407.01.T02:intron 25.0%
! AAAACAATCACAGTTAAAAG+TGG - Chr5:4412508-4412527 MsG0580024407.01.T02:CDS 25.0%
! AAGCACTAAGTAAGTATATA+TGG + Chr5:4414905-4414924 None:intergenic 25.0%
! AATTCTCGTAGTTTATTTAC+TGG - Chr5:4416796-4416815 MsG0580024407.01.T02:CDS 25.0%
! ATTAGGAACAAAATAGCTTA+TGG + Chr5:4414797-4414816 None:intergenic 25.0%
! CAAATAGTCAATACAATTGA+TGG - Chr5:4415545-4415564 MsG0580024407.01.T02:intron 25.0%
! CCACAAAAACAACAAAAATA+AGG + Chr5:4413305-4413324 None:intergenic 25.0%
! CTAATGTATTGAAACTTTCT+TGG + Chr5:4412040-4412059 None:intergenic 25.0%
! CTGAAATTGTAATTACGTTA+TGG - Chr5:4412595-4412614 MsG0580024407.01.T02:CDS 25.0%
! GAAGTCAAATTTATCCATAA+TGG - Chr5:4414517-4414536 MsG0580024407.01.T02:intron 25.0%
! GATACCATATTGAAGTTATA+GGG + Chr5:4415725-4415744 None:intergenic 25.0%
! GGTAAATAAGATTTAGTAGT+TGG - Chr5:4415319-4415338 MsG0580024407.01.T02:intron 25.0%
! GTGGTCAATAATCAAAATTT+AGG - Chr5:4416354-4416373 MsG0580024407.01.T02:intron 25.0%
! GTTTAATTGGACTAATTTGA+TGG - Chr5:4414095-4414114 MsG0580024407.01.T02:CDS 25.0%
! TCAAATAAGTCTATCTAAAG+AGG - Chr5:4413977-4413996 MsG0580024407.01.T02:intron 25.0%
! TCATAAAGCTTTCAGTTTAT+AGG - Chr5:4416405-4416424 MsG0580024407.01.T02:intron 25.0%
! TCGTAAAAGTTATGAAATAG+CGG - Chr5:4413567-4413586 MsG0580024407.01.T02:intron 25.0%
! TGATATGATTGATATAGAGA+GGG - Chr5:4416567-4416586 MsG0580024407.01.T02:intron 25.0%
! TTCAGGACCATAAAATTATA+TGG + Chr5:4417220-4417239 None:intergenic 25.0%
! TTGTATAAAGTATAACCCAA+GGG + Chr5:4414279-4414298 None:intergenic 25.0%
! TTTCACGTAAAATGAAATAG+CGG + Chr5:4412882-4412901 None:intergenic 25.0%
!! ATTTAGTTTAGTGTCCATTA+TGG + Chr5:4414534-4414553 None:intergenic 25.0%
!! GAGACTTCCATATAATTTTA+TGG - Chr5:4417210-4417229 MsG0580024407.01.T02:five_prime_UTR 25.0%
!! GGTTATTCTTTTATATGCAT+GGG + Chr5:4415930-4415949 None:intergenic 25.0%
!! GTTATTCTTTTATATGCATG+GGG + Chr5:4415929-4415948 None:intergenic 25.0%
!! TTAAGAATCTTGTTTAATCC+TGG + Chr5:4416981-4417000 None:intergenic 25.0%
!! TTATATTGTTTGTTGCCTAT+TGG - Chr5:4417177-4417196 MsG0580024407.01.T02:five_prime_UTR 25.0%
!! TTCTTCTTTTTCTTAGGTTT+AGG + Chr5:4416676-4416695 None:intergenic 25.0%
!! TTTTTATATAACCGGGTTAA+TGG + Chr5:4414157-4414176 None:intergenic 25.0%
!!! AAGATGTTTTTGACAATATG+AGG - Chr5:4415010-4415029 MsG0580024407.01.T02:intron 25.0%
!!! ATAAGCTATTTTGTTCCTAA+TGG - Chr5:4414796-4414815 MsG0580024407.01.T02:intron 25.0%
!!! CCTTATTTTTGTTGTTTTTG+TGG - Chr5:4413302-4413321 MsG0580024407.01.T02:intron 25.0%
!!! CCTTGGTTTTAAAAAAAACA+AGG - Chr5:4412914-4412933 MsG0580024407.01.T02:intron 25.0%
!!! CCTTGTTTTTTTTAAAACCA+AGG + Chr5:4412917-4412936 None:intergenic 25.0%
!!! CTGTTTTAGCATGTTTTTAT+TGG - Chr5:4416257-4416276 MsG0580024407.01.T02:intron 25.0%
!!! CTTATTTTCATAAACTCTTC+TGG + Chr5:4413872-4413891 None:intergenic 25.0%
!!! GAATTGATTTGAAATTCAGA+TGG - Chr5:4412146-4412165 MsG0580024407.01.T02:three_prime_UTR 25.0%
!!! TATACAACTTAGGCTTTTTT+TGG + Chr5:4413718-4413737 None:intergenic 25.0%
!!! TCAAGTGTTTTTTTCCTTTT+GGG - Chr5:4414663-4414682 MsG0580024407.01.T02:intron 25.0%
AACGCATTTCTCTCAAAAAA+CGG - Chr5:4413028-4413047 MsG0580024407.01.T02:intron 30.0%
AAGTACTAGTGAAACTGTTT+GGG + Chr5:4413941-4413960 None:intergenic 30.0%
AATAAATGAAACATGCCATG+TGG - Chr5:4414972-4414991 MsG0580024407.01.T02:intron 30.0%
AATAAGCTGAAAACACCTTA+TGG - Chr5:4413886-4413905 MsG0580024407.01.T02:intron 30.0%
AATCCAAAAGTAAGATACGA+TGG - Chr5:4415036-4415055 MsG0580024407.01.T02:intron 30.0%
ACATTTGGGAATAATAAGCT+GGG + Chr5:4415791-4415810 None:intergenic 30.0%
ACTATTTGAGCTTCTTTCAT+AGG + Chr5:4415533-4415552 None:intergenic 30.0%
AGAACAATTCAATCAAAGAG+AGG + Chr5:4411983-4412002 None:intergenic 30.0%
AGAAGAAACAATCTCAGTAT+AGG + Chr5:4414057-4414076 None:intergenic 30.0%
AGAGAGAAACTGAAGTTATT+AGG + Chr5:4412964-4412983 None:intergenic 30.0%
AGGTCGTATCATTTAAATCA+AGG - Chr5:4417054-4417073 MsG0580024407.01.T02:five_prime_UTR 30.0%
ATAGTTGCTCAATAAGATCA+AGG + Chr5:4415424-4415443 None:intergenic 30.0%
ATATGCATAAGATGTTGCAA+GGG - Chr5:4415570-4415589 MsG0580024407.01.T02:intron 30.0%
ATTCTCTATAGGATAAGTCA+GGG + Chr5:4415821-4415840 None:intergenic 30.0%
ATTCTTAAGTAAAAGGGCAA+AGG - Chr5:4416993-4417012 MsG0580024407.01.T02:five_prime_UTR 30.0%
CATTATTCATTTCCAGAAGT+AGG + Chr5:4417155-4417174 None:intergenic 30.0%
CATTGCATAGTAGTTAATAG+CGG + Chr5:4413654-4413673 None:intergenic 30.0%
CGATACCATATTGAAGTTAT+AGG + Chr5:4415726-4415745 None:intergenic 30.0%
CTAACCCTATAACTTCAATA+TGG - Chr5:4415718-4415737 MsG0580024407.01.T02:intron 30.0%
CTTCCTTCTTTCATTCTTTA+CGG - Chr5:4412982-4413001 MsG0580024407.01.T02:intron 30.0%
CTTGTATAAAGTATAACCCA+AGG + Chr5:4414280-4414299 None:intergenic 30.0%
GAACAATTCAATCAAAGAGA+GGG + Chr5:4411982-4412001 None:intergenic 30.0%
GAAGAAACTACTTGTACTTT+AGG - Chr5:4414245-4414264 MsG0580024407.01.T02:intron 30.0%
GAGAGAAACTGAAGTTATTA+GGG + Chr5:4412963-4412982 None:intergenic 30.0%
GCTTGGCAATTTAATATCAT+TGG - Chr5:4413429-4413448 MsG0580024407.01.T02:intron 30.0%
GGCAATTTAATATCATTGGA+AGG - Chr5:4413433-4413452 MsG0580024407.01.T02:intron 30.0%
GGCCAAATACTATATTAATG+AGG - Chr5:4414612-4414631 MsG0580024407.01.T02:intron 30.0%
GGTCGTATCATTTAAATCAA+GGG - Chr5:4417055-4417074 MsG0580024407.01.T02:five_prime_UTR 30.0%
GTATTCTGACCTTAATATCT+AGG + Chr5:4412645-4412664 None:intergenic 30.0%
GTGATATGATTGATATAGAG+AGG - Chr5:4416566-4416585 MsG0580024407.01.T02:intron 30.0%
TAAGTACTAGTGAAACTGTT+TGG + Chr5:4413942-4413961 None:intergenic 30.0%
TACATTTGGGAATAATAAGC+TGG + Chr5:4415792-4415811 None:intergenic 30.0%
TATATGCATAAGATGTTGCA+AGG - Chr5:4415569-4415588 MsG0580024407.01.T02:intron 30.0%
TCTATATCAATCATATCACG+AGG + Chr5:4416565-4416584 None:intergenic 30.0%
TGAAAATACAAGATTCTCCT+TGG - Chr5:4412897-4412916 MsG0580024407.01.T02:intron 30.0%
TGAACAAAATTGAAAGACGA+AGG + Chr5:4415109-4415128 None:intergenic 30.0%
TGCAATGCATAAAATATGCA+AGG - Chr5:4413667-4413686 MsG0580024407.01.T02:intron 30.0%
TGTTTATGAACAAAACAGAG+AGG + Chr5:4413180-4413199 None:intergenic 30.0%
TTAGAGCTTAGATTCTCTAT+AGG + Chr5:4415832-4415851 None:intergenic 30.0%
TTGTAATTACGTTATGGTCA+TGG - Chr5:4412601-4412620 MsG0580024407.01.T02:CDS 30.0%
TTTAAATCAAGGGCAGAAAA+TGG - Chr5:4417065-4417084 MsG0580024407.01.T02:five_prime_UTR 30.0%
TTTATGAACAAGCAGAATAG+AGG + Chr5:4413231-4413250 None:intergenic 30.0%
! ACTAATTTGATGGATCACTT+TGG - Chr5:4414105-4414124 MsG0580024407.01.T02:intron 30.0%
! ATTAAGTTGCTTATCCATAC+AGG + Chr5:4413746-4413765 None:intergenic 30.0%
! CGTTATTGATCTTCTTTTTG+AGG - Chr5:4412365-4412384 MsG0580024407.01.T02:CDS 30.0%
! GACATTTCAATCATGTTTTG+TGG - Chr5:4415866-4415885 MsG0580024407.01.T02:intron 30.0%
! GGGTTATTCTTTTATATGCA+TGG + Chr5:4415931-4415950 None:intergenic 30.0%
! TCCAAAACACACTCTTTTAT+TGG + Chr5:4416182-4416201 None:intergenic 30.0%
! TTAAGTTGCTTATCCATACA+GGG + Chr5:4413745-4413764 None:intergenic 30.0%
! TTGATTTTTGTGATCGGAAA+GGG + Chr5:4411949-4411968 None:intergenic 30.0%
! TTTACTGTGTTTCTGTGATA+AGG - Chr5:4413477-4413496 MsG0580024407.01.T02:intron 30.0%
!! ACCAATAAAAGAGTGTGTTT+TGG - Chr5:4416178-4416197 MsG0580024407.01.T02:intron 30.0%
!! AGATTTTTCGATATGGAAGA+AGG + Chr5:4411769-4411788 None:intergenic 30.0%
!! ATTACATCACTCTGAAATTC+AGG + Chr5:4417237-4417256 None:intergenic 30.0%
!! CATTGCTGTTATTGACTTAA+AGG - Chr5:4415265-4415284 MsG0580024407.01.T02:intron 30.0%
!! TTCAGTTTATAGGCTTTGAA+AGG - Chr5:4416415-4416434 MsG0580024407.01.T02:intron 30.0%
!! TTTGATTTTTGTGATCGGAA+AGG + Chr5:4411950-4411969 None:intergenic 30.0%
!! TTTTGAGAGAAATGCGTTTT+GGG + Chr5:4413026-4413045 None:intergenic 30.0%
!! TTTTTGAGAGAAATGCGTTT+TGG + Chr5:4413027-4413046 None:intergenic 30.0%
!!! CAAGTGTTTTTTTCCTTTTG+GGG - Chr5:4414664-4414683 MsG0580024407.01.T02:intron 30.0%
!!! CATTCGTTTTTCTGAAACAT+TGG - Chr5:4415359-4415378 MsG0580024407.01.T02:intron 30.0%
!!! CTCAAGTGTTTTTTTCCTTT+TGG - Chr5:4414662-4414681 MsG0580024407.01.T02:intron 30.0%
!!! TGAGTGATATTTTTTAGAGG+TGG - Chr5:4416335-4416354 MsG0580024407.01.T02:intron 30.0%
!!! TGGTGAGTGATATTTTTTAG+AGG - Chr5:4416332-4416351 MsG0580024407.01.T02:intron 30.0%
AAATTCATCGTGCACATGAA+AGG + Chr5:4415468-4415487 None:intergenic 35.0%
AAGACACCAATTGGGAATTA+CGG - Chr5:4413528-4413547 MsG0580024407.01.T02:intron 35.0%
ACAAATATGTCCAAAACCTG+AGG + Chr5:4416899-4416918 None:intergenic 35.0%
ACACCTTATGGACATATCAT+TGG - Chr5:4413898-4413917 MsG0580024407.01.T02:intron 35.0%
ACGAACAAAATTGTTTGGAG+TGG - Chr5:4414591-4414610 MsG0580024407.01.T02:intron 35.0%
ACTCTGCTAAATGACTAAGT+TGG + Chr5:4417104-4417123 None:intergenic 35.0%
AGAAGAATGAAATCACCAAG+AGG - Chr5:4416689-4416708 MsG0580024407.01.T02:CDS 35.0%
AGAGTGTAACTACAAAGAGA+GGG + Chr5:4416057-4416076 None:intergenic 35.0%
AGATATATCCTTCTGGACAA+TGG + Chr5:4416854-4416873 None:intergenic 35.0%
ATAGAGGATGAACAAAACAG+AGG + Chr5:4413215-4413234 None:intergenic 35.0%
ATGTTGAAGTCTCTCTGTAT+CGG + Chr5:4412301-4412320 None:intergenic 35.0%
ATTATTCCTACCCAAAGTCT+CGG - Chr5:4415993-4416012 MsG0580024407.01.T02:intron 35.0%
CAATAAGATCAAGGTGGTAT+GGG + Chr5:4415415-4415434 None:intergenic 35.0%
CATGGGACTATAAATTTGCA+CGG + Chr5:4414205-4414224 None:intergenic 35.0%
CATGTGCTCAAAGACATAAA+CGG - Chr5:4413385-4413404 MsG0580024407.01.T02:intron 35.0%
GATATATCCTTCTGGACAAT+GGG + Chr5:4416853-4416872 None:intergenic 35.0%
GATGACACATTGCAAATTCA+GGG - Chr5:4416947-4416966 MsG0580024407.01.T02:five_prime_UTR 35.0%
GATTCTCTATAGGATAAGTC+AGG + Chr5:4415822-4415841 None:intergenic 35.0%
GGTCATATTATTTCCTCACA+GGG - Chr5:4414126-4414145 MsG0580024407.01.T02:intron 35.0%
GTCTCTTTATTCTCACCAAT+AGG + Chr5:4417195-4417214 None:intergenic 35.0%
TATAGTCGAAACATGCTCTT+CGG - Chr5:4415198-4415217 MsG0580024407.01.T02:intron 35.0%
TATTGTTGTGGATGATGAGT+TGG + Chr5:4415643-4415662 None:intergenic 35.0%
TCAATAAGATCAAGGTGGTA+TGG + Chr5:4415416-4415435 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG - Chr5:4413672-4413691 MsG0580024407.01.T02:intron 35.0%
TGCATCAGAGTAGTTAATAG+CGG - Chr5:4412723-4412742 MsG0580024407.01.T02:intron 35.0%
TGGAGAAAGATTCTCTTACA+AGG - Chr5:4415056-4415075 MsG0580024407.01.T02:intron 35.0%
TGGTCATATTATTTCCTCAC+AGG - Chr5:4414125-4414144 MsG0580024407.01.T02:intron 35.0%
TGGTCCCACTAAATTCATAT+GGG + Chr5:4416146-4416165 None:intergenic 35.0%
TTAGAAAAACCACCAGAAGA+GGG + Chr5:4417029-4417048 None:intergenic 35.0%
TTATATAACCGGGTTAATGG+TGG + Chr5:4414154-4414173 None:intergenic 35.0%
TTCCTAATGGTTATTCTGAG+TGG - Chr5:4414809-4414828 MsG0580024407.01.T02:intron 35.0%
TTGGTCCCACTAAATTCATA+TGG + Chr5:4416147-4416166 None:intergenic 35.0%
TTTAGAAAAACCACCAGAAG+AGG + Chr5:4417030-4417049 None:intergenic 35.0%
TTTAGTGTCCTGAGTATTCA+CGG - Chr5:4415673-4415692 MsG0580024407.01.T02:intron 35.0%
! AATGACTAAGTTGGCTATCT+TGG + Chr5:4417095-4417114 None:intergenic 35.0%
! ACTTCAATATGGTATCGAAG+TGG - Chr5:4415729-4415748 MsG0580024407.01.T02:intron 35.0%
! ATGGTGACTGGTTAGTATTT+CGG + Chr5:4415509-4415528 None:intergenic 35.0%
! ATTCTTTTATATGCATGGGG+AGG + Chr5:4415926-4415945 None:intergenic 35.0%
! ATTTTCTTAATAGACTCGGC+AGG - Chr5:4414933-4414952 MsG0580024407.01.T02:intron 35.0%
! CATGTGCACGATGAATTTTT+GGG - Chr5:4415470-4415489 MsG0580024407.01.T02:intron 35.0%
! CTTAGTGTTGCTGAAAATTG+TGG - Chr5:4412551-4412570 MsG0580024407.01.T02:CDS 35.0%
! CTTTTTCTTAGGTTTAGGCT+TGG + Chr5:4416671-4416690 None:intergenic 35.0%
! GAATCTTGTTTAATCCTGGA+AGG + Chr5:4416977-4416996 None:intergenic 35.0%
! TATCCCGCTATAGCATTTTT+GGG - Chr5:4413606-4413625 MsG0580024407.01.T02:intron 35.0%
! TCATGTGCACGATGAATTTT+TGG - Chr5:4415469-4415488 MsG0580024407.01.T02:intron 35.0%
! TCTCCATCGTATCTTACTTT+TGG + Chr5:4415042-4415061 None:intergenic 35.0%
! TGGTGGTTTTTCTAAACTCA+AGG - Chr5:4417034-4417053 MsG0580024407.01.T02:five_prime_UTR 35.0%
! TTTGAGAGAAATGCGTTTTG+GGG + Chr5:4413025-4413044 None:intergenic 35.0%
!! AGTTTATAGGCTTTGAAAGG+TGG - Chr5:4416418-4416437 MsG0580024407.01.T02:intron 35.0%
!! TAGTAGTTAATAGCGGATAG+CGG + Chr5:4413647-4413666 None:intergenic 35.0%
!! TCGTCACAGATTTTTCGATA+TGG + Chr5:4411776-4411795 None:intergenic 35.0%
!! TTCAAGTTCTGAAAAAGCTC+CGG + Chr5:4416739-4416758 None:intergenic 35.0%
!!! ACCTAAAACAGCTTTTTCGT+GGG - Chr5:4416530-4416549 MsG0580024407.01.T02:intron 35.0%
!!! ACTTAGGCTTTTTTTGGTAG+TGG + Chr5:4413712-4413731 None:intergenic 35.0%
!!! CAGGCTTCATTCCATTTTTT+TGG + Chr5:4416597-4416616 None:intergenic 35.0%
AAATCAAGGGCAGAAAATGG+CGG - Chr5:4417068-4417087 MsG0580024407.01.T02:five_prime_UTR 40.0%
AAGTAGGACCTAAGAATGAG+AGG + Chr5:4417139-4417158 None:intergenic 40.0%
ACAGGGCCTATATACAACTT+AGG + Chr5:4413728-4413747 None:intergenic 40.0%
ACATTGTCCCTCTCATTCTT+AGG - Chr5:4417128-4417147 MsG0580024407.01.T02:five_prime_UTR 40.0%
AGACACCAATTGGGAATTAC+GGG - Chr5:4413529-4413548 MsG0580024407.01.T02:intron 40.0%
AGAGCAAGAAGACACCAATT+GGG - Chr5:4413520-4413539 MsG0580024407.01.T02:intron 40.0%
AGCAATGTCGAGTTTATCAC+TGG + Chr5:4413412-4413431 None:intergenic 40.0%
AGCTGGGACAAGATTGTATA+TGG + Chr5:4415775-4415794 None:intergenic 40.0%
AGGTCATCATCCACCTTAAT+GGG + Chr5:4416514-4416533 None:intergenic 40.0%
AGTAGGACCTAAGAATGAGA+GGG + Chr5:4417138-4417157 None:intergenic 40.0%
AGTATTCGTAAAGCTCCTGT+TGG - Chr5:4412327-4412346 MsG0580024407.01.T02:CDS 40.0%
AGTCTATCAGATACAAAGCG+AGG + Chr5:4415700-4415719 None:intergenic 40.0%
AGTTGTATATAGGCCCTGTA+TGG - Chr5:4413729-4413748 MsG0580024407.01.T02:intron 40.0%
ATAGTCGAAACATGCTCTTC+GGG - Chr5:4415199-4415218 MsG0580024407.01.T02:intron 40.0%
ATCAAGCATAGCAGCAAACA+AGG - Chr5:4412227-4412246 MsG0580024407.01.T02:three_prime_UTR 40.0%
ATCTGTGACGAACTCAATCA+CGG - Chr5:4411785-4411804 MsG0580024407.01.T02:three_prime_UTR 40.0%
CACCACTCAGAATAACCATT+AGG + Chr5:4414814-4414833 None:intergenic 40.0%
CACGCTGAGTTACTTAAATC+AGG + Chr5:4416767-4416786 None:intergenic 40.0%
CAGCCAATGATATGTCCATA+AGG + Chr5:4413904-4413923 None:intergenic 40.0%
CATAAAATATGCAAGGTCCG+GGG - Chr5:4413674-4413693 MsG0580024407.01.T02:intron 40.0%
CTCACGAGAACATACAACTT+AGG + Chr5:4412680-4412699 None:intergenic 40.0%
CTGATACGCAAATTTCCAGA+AGG - Chr5:4415242-4415261 MsG0580024407.01.T02:intron 40.0%
GAAATTCAGATGGCGTTACA+AGG - Chr5:4412156-4412175 MsG0580024407.01.T02:three_prime_UTR 40.0%
GAAGAAACAACTTTCCAGAG+TGG - Chr5:4416925-4416944 MsG0580024407.01.T02:five_prime_UTR 40.0%
GAAGTTACAAACCTGAGGAA+CGG + Chr5:4413124-4413143 None:intergenic 40.0%
GAGAGGGATCTCCAAAAAAA+TGG - Chr5:4416583-4416602 MsG0580024407.01.T02:intron 40.0%
GCACATGAAAGGAATCAAGT+TGG + Chr5:4415457-4415476 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG - Chr5:4413673-4413692 MsG0580024407.01.T02:intron 40.0%
GCTGGGACAAGATTGTATAT+GGG + Chr5:4415774-4415793 None:intergenic 40.0%
GGACTATAAATTTGCACGGA+AGG + Chr5:4414201-4414220 None:intergenic 40.0%
GGATGACACATTGCAAATTC+AGG - Chr5:4416946-4416965 MsG0580024407.01.T02:five_prime_UTR 40.0%
GGATTCATACCCAACTGTAA+TGG - Chr5:4415286-4415305 MsG0580024407.01.T02:intron 40.0%
GGGTCCCATATGAATTTAGT+GGG - Chr5:4416139-4416158 MsG0580024407.01.T02:intron 40.0%
GTAAGTCCTCCATTACAGTT+GGG + Chr5:4415298-4415317 None:intergenic 40.0%
GTATAGGTACCTCTTGTCAT+AGG + Chr5:4414041-4414060 None:intergenic 40.0%
GTCAAGAAGTTACAAACCTG+AGG + Chr5:4413129-4413148 None:intergenic 40.0%
GTCTTCCTGTGAATCAAAGT+TGG + Chr5:4416464-4416483 None:intergenic 40.0%
GTGATAAACTCGACATTGCT+TGG - Chr5:4413412-4413431 MsG0580024407.01.T02:intron 40.0%
GTTGCTCAATAAGATCAAGG+TGG + Chr5:4415421-4415440 None:intergenic 40.0%
TAAGTAACTCAGCGTGTGTT+GGG - Chr5:4416771-4416790 MsG0580024407.01.T02:CDS 40.0%
TAGAAAAACCACCAGAAGAG+GGG + Chr5:4417028-4417047 None:intergenic 40.0%
TAGAGCAAGAAGACACCAAT+TGG - Chr5:4413519-4413538 MsG0580024407.01.T02:intron 40.0%
TAGGTCATCATCCACCTTAA+TGG + Chr5:4416515-4416534 None:intergenic 40.0%
TCAATAACAGCAATGCCTTC+TGG + Chr5:4415260-4415279 None:intergenic 40.0%
TCATTCTTAGGTCCTACTTC+TGG - Chr5:4417140-4417159 MsG0580024407.01.T02:five_prime_UTR 40.0%
TGGGTCCCATATGAATTTAG+TGG - Chr5:4416138-4416157 MsG0580024407.01.T02:intron 40.0%
TGTAAGTCCTCCATTACAGT+TGG + Chr5:4415299-4415318 None:intergenic 40.0%
TTAAGTAACTCAGCGTGTGT+TGG - Chr5:4416770-4416789 MsG0580024407.01.T02:CDS 40.0%
TTCATACCCAACTGTAATGG+AGG - Chr5:4415289-4415308 MsG0580024407.01.T02:intron 40.0%
TTCTGTGATAAGGTCAGCAA+TGG - Chr5:4413487-4413506 MsG0580024407.01.T02:intron 40.0%
TTGAGCTTCTTTCATAGGCA+TGG + Chr5:4415528-4415547 None:intergenic 40.0%
TTTAGAAGAGAGCAAACACG+AGG + Chr5:4413151-4413170 None:intergenic 40.0%
! AAATTCAGGGTATTCCTTCC+AGG - Chr5:4416960-4416979 MsG0580024407.01.T02:five_prime_UTR 40.0%
! AACTGTAATGGAGGACTTAC+AGG - Chr5:4415298-4415317 MsG0580024407.01.T02:intron 40.0%
! AAGCTACCACAAGTTTTACG+AGG - Chr5:4414336-4414355 MsG0580024407.01.T02:intron 40.0%
! AAGTTTTCCTAAACAGCCAG+GGG + Chr5:4414725-4414744 None:intergenic 40.0%
! AGAAGTTTTCCTAAACAGCC+AGG + Chr5:4414727-4414746 None:intergenic 40.0%
! AGCTACCACAAGTTTTACGA+GGG - Chr5:4414337-4414356 MsG0580024407.01.T02:intron 40.0%
! ATAAACCTTTTCAGCCAACC+CGG - Chr5:4414845-4414864 MsG0580024407.01.T02:intron 40.0%
! ATCCCGCTATAGCATTTTTG+GGG - Chr5:4413607-4413626 MsG0580024407.01.T02:intron 40.0%
! CTATCCCGCTATAGCATTTT+TGG - Chr5:4413605-4413624 MsG0580024407.01.T02:intron 40.0%
! CTTCTGGAAATTTGCGTATC+AGG + Chr5:4415244-4415263 None:intergenic 40.0%
! GAAGTTTTCCTAAACAGCCA+GGG + Chr5:4414726-4414745 None:intergenic 40.0%
! GAGAGTGTAACTACAAAGAG+AGG + Chr5:4416058-4416077 None:intergenic 40.0%
! GTATCGGTCGAAAATTTGAC+CGG + Chr5:4412285-4412304 None:intergenic 40.0%
! TGATCCTAAAGTGCCCATTA+AGG - Chr5:4416498-4416517 MsG0580024407.01.T02:intron 40.0%
! TTGTATTAGCTTACTGCCTC+AGG - Chr5:4416880-4416899 MsG0580024407.01.T02:CDS 40.0%
! TTTTGTGGACAACACAGTCA+TGG - Chr5:4413317-4413336 MsG0580024407.01.T02:intron 40.0%
!! AATCACGTTGCTGTTTACAG+CGG - Chr5:4414311-4414330 MsG0580024407.01.T02:intron 40.0%
!! ACTTTAGGTTCTAAAGCCCT+TGG - Chr5:4414260-4414279 MsG0580024407.01.T02:intron 40.0%
!! ATGGGCACTTTAGGATCATT+AGG + Chr5:4416496-4416515 None:intergenic 40.0%
!! CACTTTAGGATCATTAGGGT+AGG + Chr5:4416491-4416510 None:intergenic 40.0%
!! CTTTAGGTTCTAAAGCCCTT+GGG - Chr5:4414261-4414280 MsG0580024407.01.T02:intron 40.0%
!! TCCCACGAAAAAGCTGTTTT+AGG + Chr5:4416534-4416553 None:intergenic 40.0%
!! TGGGCACTTTAGGATCATTA+GGG + Chr5:4416495-4416514 None:intergenic 40.0%
!! TGTTAGCTTTCATGTCCACA+TGG + Chr5:4414990-4415009 None:intergenic 40.0%
!!! GACCTAAAACAGCTTTTTCG+TGG - Chr5:4416529-4416548 MsG0580024407.01.T02:intron 40.0%
!!! TTTTGGGGTGAGAAGATGAA+AGG + Chr5:4413010-4413029 None:intergenic 40.0%
AAGATGGGCATTAGTCAGCT+TGG + Chr5:4416716-4416735 None:intergenic 45.0%
ACGAGTCCTACCAATTCTTG+TGG - Chr5:4416118-4416137 MsG0580024407.01.T02:intron 45.0%
AGTCAGGGACAGACTACATT+TGG + Chr5:4415806-4415825 None:intergenic 45.0%
AGTTAATAGCGGCGCTATAG+CGG - Chr5:4412734-4412753 MsG0580024407.01.T02:intron 45.0%
ATACCCATCAACCACAAGAG+AGG + Chr5:4414872-4414891 None:intergenic 45.0%
ATTAGTCAGCTTGGTCCTCT+TGG + Chr5:4416707-4416726 None:intergenic 45.0%
CATATGGGACCCACAAGAAT+TGG + Chr5:4416131-4416150 None:intergenic 45.0%
CATCACCCGTAATTCCCAAT+TGG + Chr5:4413537-4413556 None:intergenic 45.0%
CGACCCCAAAAATGCTATAG+CGG + Chr5:4413613-4413632 None:intergenic 45.0%
CGAGTCCTACCAATTCTTGT+GGG - Chr5:4416119-4416138 MsG0580024407.01.T02:intron 45.0%
CTACTAACACTGCAAAGAGG+AGG - Chr5:4416617-4416636 MsG0580024407.01.T02:intron 45.0%
CTCTTTGCAGTGTTAGTAGC+AGG + Chr5:4416616-4416635 None:intergenic 45.0%
CTGAAAAAGCTCCGGAAGAT+GGG + Chr5:4416731-4416750 None:intergenic 45.0%
CTGCTACTAACACTGCAAAG+AGG - Chr5:4416614-4416633 MsG0580024407.01.T02:intron 45.0%
GACCCCAAAAATGCTATAGC+GGG + Chr5:4413612-4413631 None:intergenic 45.0%
GAGATTTCCCATTGTCCAGA+AGG - Chr5:4416843-4416862 MsG0580024407.01.T02:CDS 45.0%
GCAATTCCTCCTATGACAAG+AGG - Chr5:4414029-4414048 MsG0580024407.01.T02:CDS 45.0%
GCGCCGTAAAGAATGAAAGA+AGG + Chr5:4412988-4413007 None:intergenic 45.0%
GCTGTCCAACTTTGATTCAC+AGG - Chr5:4416456-4416475 MsG0580024407.01.T02:intron 45.0%
GGAAACAGAGAGCAGAATAG+AGG + Chr5:4413284-4413303 None:intergenic 45.0%
GTCAGGGACAGACTACATTT+GGG + Chr5:4415805-4415824 None:intergenic 45.0%
GTGATCGGAAAGGGTGAAAA+GGG + Chr5:4411940-4411959 None:intergenic 45.0%
TAGGTACCTCTTGTCATAGG+AGG + Chr5:4414038-4414057 None:intergenic 45.0%
TATACTCAGATGACTCGCTG+TGG - Chr5:4416312-4416331 MsG0580024407.01.T02:intron 45.0%
TATCTCATAACGCTACGCCA+TGG + Chr5:4412810-4412829 None:intergenic 45.0%
TCTGAAAAAGCTCCGGAAGA+TGG + Chr5:4416732-4416751 None:intergenic 45.0%
TCTTTCATAGGCATGGTGAC+TGG + Chr5:4415521-4415540 None:intergenic 45.0%
TGAGCTTAGCTCAGTTGGTT+GGG - Chr5:4412696-4412715 MsG0580024407.01.T02:intron 45.0%
TGATCGGAAAGGGTGAAAAG+GGG + Chr5:4411939-4411958 None:intergenic 45.0%
TGTGATAAGGTCAGCAATGG+AGG - Chr5:4413490-4413509 MsG0580024407.01.T02:intron 45.0%
TGTGATCGGAAAGGGTGAAA+AGG + Chr5:4411941-4411960 None:intergenic 45.0%
TTGCAATGTGTCATCCACTC+TGG + Chr5:4416942-4416961 None:intergenic 45.0%
! AGAGAGGGTGCATATACACT+TGG + Chr5:4416042-4416061 None:intergenic 45.0%
! CTACCACAAGTTTTACGAGG+GGG - Chr5:4414339-4414358 MsG0580024407.01.T02:intron 45.0%
! GCTACCACAAGTTTTACGAG+GGG - Chr5:4414338-4414357 MsG0580024407.01.T02:intron 45.0%
! TAGCTTACTGCCTCAGGTTT+TGG - Chr5:4416886-4416905 MsG0580024407.01.T02:exon 45.0%
! TCCACCTTAATGGGCACTTT+AGG + Chr5:4416505-4416524 None:intergenic 45.0%
! TCCTAAAGTGCCCATTAAGG+TGG - Chr5:4416501-4416520 MsG0580024407.01.T02:intron 45.0%
!! ATAGGCTTTGAAAGGTGGCA+GGG - Chr5:4416423-4416442 MsG0580024407.01.T02:intron 45.0%
!! TATAGGCTTTGAAAGGTGGC+AGG - Chr5:4416422-4416441 MsG0580024407.01.T02:intron 45.0%
!!! CGCTATAGCATTTTTGGGGT+CGG - Chr5:4413611-4413630 MsG0580024407.01.T02:intron 45.0%
!!! GCTTTTTTTGGTAGTGGCCT+AGG + Chr5:4413706-4413725 None:intergenic 45.0%
!! ATAAATTAATAATGTTTAAT+TGG - Chr5:4414082-4414101 MsG0580024407.01.T02:CDS 5.0%
!! ATTAAACATTATTAATTTAT+TGG + Chr5:4414082-4414101 None:intergenic 5.0%
!! TTAAACATTATTAATTTATT+GGG + Chr5:4414081-4414100 None:intergenic 5.0%
AAAACCGCTGTGCAGTGTTG+CGG + Chr5:4412848-4412867 None:intergenic 50.0%
ACAGGGATCCACCATTAACC+CGG - Chr5:4414143-4414162 MsG0580024407.01.T02:intron 50.0%
ATCAACCACAAGAGAGGTCC+GGG + Chr5:4414866-4414885 None:intergenic 50.0%
CATCAACCACAAGAGAGGTC+CGG + Chr5:4414867-4414886 None:intergenic 50.0%
CGCCATGGCTTATTGCATAG+CGG + Chr5:4412795-4412814 None:intergenic 50.0%
CGCTTCATTTGAGCTCCAAC+AGG + Chr5:4412345-4412364 None:intergenic 50.0%
CTCAGAGAAGCCGAGACTTT+GGG + Chr5:4416006-4416025 None:intergenic 50.0%
GACCGCTATGCAATAAGCCA+TGG - Chr5:4412790-4412809 MsG0580024407.01.T02:intron 50.0%
GCTGACTAATGCCCATCTTC+CGG - Chr5:4416717-4416736 MsG0580024407.01.T02:CDS 50.0%
GGACCTCTCTTGTGGTTGAT+GGG - Chr5:4414866-4414885 MsG0580024407.01.T02:intron 50.0%
GGCGTAGCGTTATGAGATAG+CGG - Chr5:4412811-4412830 MsG0580024407.01.T02:intron 50.0%
GTCATGGCAGCATCAACTTC+TGG - Chr5:4413333-4413352 MsG0580024407.01.T02:intron 50.0%
GTGAGCTTAGCTCAGTTGGT+TGG - Chr5:4412695-4412714 MsG0580024407.01.T02:intron 50.0%
GTTACAAACCTGAGGAACGG+CGG + Chr5:4413121-4413140 None:intergenic 50.0%
TCTCAGAGAAGCCGAGACTT+TGG + Chr5:4416007-4416026 None:intergenic 50.0%
TCTCGTGAGCTTAGCTCAGT+TGG - Chr5:4412691-4412710 MsG0580024407.01.T02:intron 50.0%
TGAAAGGTGGCAGGGAGATT+TGG - Chr5:4416431-4416450 MsG0580024407.01.T02:intron 50.0%
TGGCTTATTGCATAGCGGTC+CGG + Chr5:4412790-4412809 None:intergenic 50.0%
TGGGACCCACAAGAATTGGT+AGG + Chr5:4416127-4416146 None:intergenic 50.0%
TGTGCCAAATGCTCTTGCTC+CGG - Chr5:4412263-4412282 MsG0580024407.01.T02:three_prime_UTR 50.0%
! AGGAGTGCAGCACAAATGGA+AGG - Chr5:4416637-4416656 MsG0580024407.01.T02:intron 50.0%
! ATGAGATAGCGGCGCAATAG+CGG - Chr5:4412822-4412841 MsG0580024407.01.T02:intron 50.0%
! CGAATGGCTGTGTTGACATG+GGG + Chr5:4414702-4414721 None:intergenic 50.0%
! GACTCGGCAGGCTTTAACAT+TGG - Chr5:4414945-4414964 MsG0580024407.01.T02:intron 50.0%
! GCGAATGGCTGTGTTGACAT+GGG + Chr5:4414703-4414722 None:intergenic 50.0%
! GTGTTGACATGGGGTAGCAT+TGG + Chr5:4414693-4414712 None:intergenic 50.0%
!! CTTCTCTGAGACAAGGCACA+AGG - Chr5:4416016-4416035 MsG0580024407.01.T02:intron 50.0%
!! GTAGCATTGGCTACCCCAAA+AGG + Chr5:4414680-4414699 None:intergenic 50.0%
!! GTTAATGGTGGATCCCTGTG+AGG + Chr5:4414142-4414161 None:intergenic 50.0%
!! TTGACCGGAGCAAGAGCATT+TGG + Chr5:4412270-4412289 None:intergenic 50.0%
AACCACCAGAAGAGGGGTTC+TGG + Chr5:4417022-4417041 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCT+AGG - Chr5:4413686-4413705 MsG0580024407.01.T02:intron 55.0%
AGCGAGGACCGTGAATACTC+AGG + Chr5:4415684-4415703 None:intergenic 55.0%
AGTGGCCTAGGTTTGAACCC+CGG + Chr5:4413694-4413713 None:intergenic 55.0%
CGGACCTCTCTTGTGGTTGA+TGG - Chr5:4414865-4414884 MsG0580024407.01.T02:intron 55.0%
GAGAAGCCGAGACTTTGGGT+AGG + Chr5:4416002-4416021 None:intergenic 55.0%
GGCGCTATAGCGGTCAATAG+CGG - Chr5:4412744-4412763 MsG0580024407.01.T02:intron 55.0%
TAAGGAACGACGGCGGATGA+CGG + Chr5:4413095-4413114 None:intergenic 55.0%
TGGCCCCCTCGTAAAACTTG+TGG + Chr5:4414345-4414364 None:intergenic 55.0%
! GAGGAGGAGTGCAGCACAAA+TGG - Chr5:4416633-4416652 MsG0580024407.01.T02:intron 55.0%
! GGCGAATGGCTGTGTTGACA+TGG + Chr5:4414704-4414723 None:intergenic 55.0%
!! GTCTCGGCTTCTCTGAGACA+AGG - Chr5:4416009-4416028 MsG0580024407.01.T02:intron 55.0%
ACAAACCTGAGGAACGGCGG+CGG + Chr5:4413118-4413137 None:intergenic 60.0%
ACCACAAGAGAGGTCCGGGT+TGG + Chr5:4414862-4414881 None:intergenic 60.0%
CCATTCGCCCCTGGCTGTTT+AGG - Chr5:4414715-4414734 MsG0580024407.01.T02:intron 60.0%
CCTAAACAGCCAGGGGCGAA+TGG + Chr5:4414718-4414737 None:intergenic 60.0%
GACCAGAACCCCTCTTCTGG+TGG - Chr5:4417017-4417036 MsG0580024407.01.T02:five_prime_UTR 60.0%
GGTGACCAGAACCCCTCTTC+TGG - Chr5:4417014-4417033 MsG0580024407.01.T02:five_prime_UTR 60.0%
TCAACACAGCCATTCGCCCC+TGG - Chr5:4414706-4414725 MsG0580024407.01.T02:intron 60.0%
! TAGCGGATAGCGGCGTGTAG+CGG + Chr5:4413637-4413656 None:intergenic 60.0%
!! GAGGTCCGGGTTGGCTGAAA+AGG + Chr5:4414853-4414872 None:intergenic 60.0%
ACGGCGGCGGTAAGGAACGA+CGG + Chr5:4413105-4413124 None:intergenic 65.0%
GCCAACCCGGACCTCTCTTG+TGG - Chr5:4414858-4414877 MsG0580024407.01.T02:intron 65.0%
! GGTGCGACGGCGGCGTTTTA+CGG + Chr5:4413074-4413093 None:intergenic 65.0%
AGCGGTCAATAGCGGCCGCG+CGG - Chr5:4412752-4412771 MsG0580024407.01.T02:intron 70.0%
CCTGAGGAACGGCGGCGGTA+AGG + Chr5:4413113-4413132 None:intergenic 70.0%
CCTTACCGCCGCCGTTCCTC+AGG - Chr5:4413110-4413129 MsG0580024407.01.T02:intron 70.0%
GCGGCCGCAACACTGCACAG+CGG - Chr5:4412841-4412860 MsG0580024407.01.T02:intron 70.0%
GCGGCGGTAAGGAACGACGG+CGG + Chr5:4413102-4413121 None:intergenic 70.0%
TCAATAGCGGCCGCGCGGTG+CGG - Chr5:4412757-4412776 MsG0580024407.01.T02:intron 70.0%
! GACGGCGGATGACGGTGCGA+CGG + Chr5:4413087-4413106 None:intergenic 70.0%
! GGCGGATGACGGTGCGACGG+CGG + Chr5:4413084-4413103 None:intergenic 75.0%
! CGCGCGGTGCGGTGCGGTAC+CGG - Chr5:4412768-4412787 MsG0580024407.01.T02:intron 80.0%
! CGGTACCGCACCGCACCGCG+CGG + Chr5:4412770-4412789 None:intergenic 80.0%
! AGCGGCCGCGCGGTGCGGTG+CGG - Chr5:4412762-4412781 MsG0580024407.01.T02:intron 85.0%
Chromosome Type Strat End Strand Name
Chr5 gene 4411763 4417306 4411763 ID=MsG0580024407.01;Name=MsG0580024407.01
Chr5 mRNA 4411763 4417306 4411763 ID=MsG0580024407.01.T01;Parent=MsG0580024407.01;Name=MsG0580024407.01.T01;_AED=0.39;_eAED=0.39;_QI=44|1|1|1|0.75|0.8|5|538|270
Chr5 exon 4416683 4416904 4416683 ID=MsG0580024407.01.T01:exon:28995;Parent=MsG0580024407.01.T01
Chr5 exon 4417263 4417306 4417263 ID=MsG0580024407.01.T01:exon:28994;Parent=MsG0580024407.01.T01
Chr5 five_prime_UTR 4417263 4417306 4417263 ID=MsG0580024407.01.T01:five_prime_utr;Parent=MsG0580024407.01.T01
Chr5 CDS 4416683 4416904 4416683 ID=MsG0580024407.01.T01:cds;Parent=MsG0580024407.01.T01
Chr5 CDS 4413992 4414123 4413992 ID=MsG0580024407.01.T01:cds;Parent=MsG0580024407.01.T01
Chr5 CDS 4413750 4413866 4413750 ID=MsG0580024407.01.T01:cds;Parent=MsG0580024407.01.T01
Chr5 CDS 4412301 4412642 4412301 ID=MsG0580024407.01.T01:cds;Parent=MsG0580024407.01.T01
Chr5 three_prime_UTR 4411763 4412300 4411763 ID=MsG0580024407.01.T01:three_prime_utr;Parent=MsG0580024407.01.T01
Chr5 mRNA 4411763 4417306 4411763 ID=MsG0580024407.01.T02;Parent=MsG0580024407.01;Name=MsG0580024407.01.T02;_AED=0.36;_eAED=0.36;_QI=402|1|1|1|1|1|4|538|270
Chr5 exon 4416683 4417306 4416683 ID=MsG0580024407.01.T02:exon:28999;Parent=MsG0580024407.01.T02
Chr5 five_prime_UTR 4416905 4417306 4416905 ID=MsG0580024407.01.T02:five_prime_utr;Parent=MsG0580024407.01.T02
Chr5 CDS 4416683 4416904 4416683 ID=MsG0580024407.01.T02:cds;Parent=MsG0580024407.01.T02
Chr5 CDS 4413992 4414123 4413992 ID=MsG0580024407.01.T02:cds;Parent=MsG0580024407.01.T02
Chr5 CDS 4413750 4413866 4413750 ID=MsG0580024407.01.T02:cds;Parent=MsG0580024407.01.T02
Chr5 CDS 4412301 4412642 4412301 ID=MsG0580024407.01.T02:cds;Parent=MsG0580024407.01.T02
Chr5 three_prime_UTR 4411763 4412300 4411763 ID=MsG0580024407.01.T02:three_prime_utr;Parent=MsG0580024407.01.T02
Gene Sequence

>MsG0580024407.01.T01

ATGGCGTTACAAGGAAAGCTAGATAGATTCAAAAAGCAGCAAGAGAAATGTCAATCAACACTATCAAGCATAGCAGCAAACAAGGCTGTATCTGCATCTGTGCCAAATGCTCTTGCTCCGGTCAAATTTTCGACCGATACAGAGAGACTTCAACATATTAATAGTATTCGTAAAGCTCCTGTTGGAGCTCAAATGAAGCGCGTTATTGATCTTCTTTTTGAGACTCGGCAGGCTTTAACATTGGAGCAAATAAATGAAACATGCCATGTGGACATGAAAGCTAACAAAGATGTTTTTGACAATATGAGGAAAAATCCAAAAGTAAGATACGATGGAGAAAGATTCTCTTACAAGTCGAAACATGCTCTTCGGGACAAAAAAGAGCTGCTTTTCCTGATACGCAAATTTCCAGAAGGCATTGCTGTTATTGACTTAAAGGATTCATACCCAACTGTAATGGAGGACTTACAGGCTTTGAAAGGTGGCAGGGAGATTTGGCTGCTGTCCAACTTTGATTCACAGGAAGACATTGCCTACCCTAATGATCCTAAAGTGCCCATTAAGGTGGATGATGACCTAAAACAGCTTTTTCGTGGGATTGAATTGCCTCGTGATATGATTGATATAGAGAGGGATCTCCAAAAAAATGGAATGAAGCCTGCTACTAACACTGCAAAGAGGAGGAGTGCAGCACAAATGGAAGGCATTTCATCCAAGCCTAAACCTAAGAAAAAGAAGAATGAAATCACCAAGAGGACCAAGCTGACTAATGCCCATCTTCCGGAGCTTTTTCAGAACTTGAACAACTCCTGA

>MsG0580024407.01.T02

ATGGCGTTACAAGGAAAGCTAGATAGATTCAAAAAGCAGCAAGAGAAATGTCAATCAACACTATCAAGCATAGCAGCAAACAAGGCTGTATCTGCATCTGTGCCAAATGCTCTTGCTCCGGTCAAATTTTCGACCGATACAGAGAGACTTCAACATATTAATAGTATTCGTAAAGCTCCTGTTGGAGCTCAAATGAAGCGCGTTATTGATCTTCTTTTTGAGACTCGGCAGGCTTTAACATTGGAGCAAATAAATGAAACATGCCATGTGGACATGAAAGCTAACAAAGATGTTTTTGACAATATGAGGAAAAATCCAAAAGTAAGATACGATGGAGAAAGATTCTCTTACAAGTCGAAACATGCTCTTCGGGACAAAAAAGAGCTGCTTTTCCTGATACGCAAATTTCCAGAAGGCATTGCTGTTATTGACTTAAAGGATTCATACCCAACTGTAATGGAGGACTTACAGGCTTTGAAAGGTGGCAGGGAGATTTGGCTGCTGTCCAACTTTGATTCACAGGAAGACATTGCCTACCCTAATGATCCTAAAGTGCCCATTAAGGTGGATGATGACCTAAAACAGCTTTTTCGTGGGATTGAATTGCCTCGTGATATGATTGATATAGAGAGGGATCTCCAAAAAAATGGAATGAAGCCTGCTACTAACACTGCAAAGAGGAGGAGTGCAGCACAAATGGAAGGCATTTCATCCAAGCCTAAACCTAAGAAAAAGAAGAATGAAATCACCAAGAGGACCAAGCTGACTAATGCCCATCTTCCGGAGCTTTTTCAGAACTTGAACAACTCCTGA

Protein sequence

>MsG0580024407.01.T01

MALQGKLDRFKKQQEKCQSTLSSIAANKAVSASVPNALAPVKFSTDTERLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPKVRYDGERFSYKSKHALRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQALKGGREIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLNNS*

>MsG0580024407.01.T02

MALQGKLDRFKKQQEKCQSTLSSIAANKAVSASVPNALAPVKFSTDTERLQHINSIRKAPVGAQMKRVIDLLFETRQALTLEQINETCHVDMKANKDVFDNMRKNPKVRYDGERFSYKSKHALRDKKELLFLIRKFPEGIAVIDLKDSYPTVMEDLQALKGGREIWLLSNFDSQEDIAYPNDPKVPIKVDDDLKQLFRGIELPRDMIDIERDLQKNGMKPATNTAKRRSAAQMEGISSKPKPKKKKNEITKRTKLTNAHLPELFQNLNNS*