AlfalfaGEDB | MsG0780039472.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039472.01

KEGG: -
GO: -
PFAM: PF13639

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039472.01.T01	XP_003623820.1	88.308	402	11	2	1	402	1	366	0	706

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039472.01.T01	Q93Z92	51.613	403	135	9	14	402	34	390	3.83E-117	349

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039472.01.T01	G7L1G9	88.308	402	11	2	1	402	1	366	0.0	706

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048345.01	MsG0780039472.01	0.816193	6.273355e-52	4.415605e-49
MsG0080048348.01	MsG0780039472.01	0.810645	1.039837e-50	6.302716e-48
MsG0180000019.01	MsG0780039472.01	0.860543	1.919370e-63	5.265849e-60
MsG0180000089.01	MsG0780039472.01	0.821142	4.724871e-53	3.812552e-50
MsG0180001050.01	MsG0780039472.01	0.838899	2.185396e-57	2.968393e-54
MsG0180001053.01	MsG0780039472.01	0.831994	1.217091e-55	1.342772e-52
MsG0180004110.01	MsG0780039472.01	0.826527	2.583837e-54	2.429209e-51
MsG0180004562.01	MsG0780039472.01	0.839922	1.185896e-57	1.662425e-54
MsG0180004752.01	MsG0780039472.01	0.836065	1.163833e-56	1.450345e-53
MsG0180004770.01	MsG0780039472.01	0.801244	9.867798e-49	4.689605e-46

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PPI

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Gene1	Gene2	Type
MsG0480020544.01	MsG0780039472.01	PPI
MsG0780039472.01	MsG0780041122.01	PPI
MsG0780039472.01	MsG0880045869.01	PPI
MsG0780039472.01	MsG0880045869.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039472.01.T01	MTR_7g076010	88.308	402	11	2	1	402	1	366	0.0	706
MsG0780039472.01.T01	MTR_4g102870	49.265	408	161	9	1	401	1	369	6.10e-126	368
MsG0780039472.01.T01	MTR_5g010720	53.425	365	142	9	39	401	47	385	2.54e-114	339
MsG0780039472.01.T01	MTR_8g105330	44.324	370	160	6	29	396	8	333	4.02e-98	296
MsG0780039472.01.T01	MTR_1g032440	55.080	187	80	3	212	396	163	347	1.79e-65	213
MsG0780039472.01.T01	MTR_1g032440	56.790	81	35	0	51	131	41	121	7.94e-23	99.0
MsG0780039472.01.T01	MTR_7g088500	33.626	342	150	6	63	397	24	295	1.17e-58	193
MsG0780039472.01.T01	MTR_1g011380	34.650	329	187	8	68	392	81	385	2.69e-44	159
MsG0780039472.01.T01	MTR_3g107995	31.889	323	181	9	79	392	69	361	5.90e-40	147
MsG0780039472.01.T01	MTR_1g032440	51.095	137	63	3	212	346	163	297	2.71e-37	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039472.01.T01	AT3G61180	50.000	400	162	6	3	399	10	374	4.79e-128	374
MsG0780039472.01.T01	AT4G11680	51.613	403	135	9	14	402	34	390	3.91e-118	349
MsG0780039472.01.T01	AT4G11680	48.148	432	135	10	14	402	34	419	2.36e-111	333
MsG0780039472.01.T01	AT1G63170	51.706	381	133	4	33	397	29	374	7.47e-111	330
MsG0780039472.01.T01	AT1G68070	40.806	397	173	7	4	396	2	340	1.84e-95	290
MsG0780039472.01.T01	AT2G01735	43.429	350	146	7	51	394	50	353	2.04e-86	267
MsG0780039472.01.T01	AT1G12760	62.051	195	71	2	210	401	212	406	2.74e-79	250
MsG0780039472.01.T01	AT1G12760	62.051	195	71	2	210	401	141	335	2.89e-79	248
MsG0780039472.01.T01	AT2G01735	42.623	244	94	4	51	291	50	250	6.00e-53	177
MsG0780039472.01.T01	AT4G32600	31.692	325	181	9	79	392	113	407	3.15e-45	162

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Find 129 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCAAATTTGCAGAG+AGG	0.690069	7:-64598890	None:intergenic
AAAGGAATCTAAGGAAGAAG+GGG	0.596666	7:+64598300	MsG0780039472.01.T01:CDS
AAATGAGTTAACAGGTGTTG+TGG	0.587836	7:+64599389	MsG0780039472.01.T01:three_prime_UTR
AAATGGGTGGCGGTGCGGAG+TGG	0.561435	7:-64595915	None:intergenic
AAATGTCAAATTTGCAGAGA+GGG	0.546411	7:-64598889	None:intergenic
AAATTCTTCATATATACCAA+TGG	0.600971	7:-64599218	None:intergenic
AAATTGGAGGTGAAATAAAA+TGG	0.284743	7:+64599040	MsG0780039472.01.T01:three_prime_UTR
AAATTGTTCCCTATATGGTT+TGG	0.412620	7:-64599191	None:intergenic
AAGGAGAAGGGGTAATCATT+TGG	0.397806	7:+64596220	MsG0780039472.01.T01:CDS
AAGTTATGAGCTAAAGTGAA+AGG	0.596976	7:-64599245	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGTCAAATTTGCAGAG+AGG	-	Chr7:64598893-64598912	None:intergenic	30.0%
AAAATTGCAAGGAAGAAACA+TGG	-	Chr7:64597781-64597800	None:intergenic	30.0%
AAACTTTAGGTAGAAGTTCA+AGG	-	Chr7:64597110-64597129	None:intergenic	30.0%
AAATGTCAAATTTGCAGAGA+GGG	-	Chr7:64598892-64598911	None:intergenic	30.0%
AAATTGTTCCCTATATGGTT+TGG	-	Chr7:64599194-64599213	None:intergenic	30.0%
AAGTTATGAGCTAAAGTGAA+AGG	-	Chr7:64599248-64599267	None:intergenic	30.0%
ACATGATTGAATTACAATGG+AGG	+	Chr7:64597394-64597413	MsG0780039472.01.T01:intron	30.0%
ATAAAGGAATCTAAGGAAGA+AGG	+	Chr7:64598298-64598317	MsG0780039472.01.T01:CDS	30.0%
ATGTCACTATCTCAATCATA+AGG	+	Chr7:64597074-64597093	MsG0780039472.01.T01:intron	30.0%
ATTGTGTTGTCTATAATCAG+CGG	+	Chr7:64599162-64599181	MsG0780039472.01.T01:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	64595822	64599467	64595822	ID=MsG0780039472.01;Name=MsG0780039472.01
Chr7	mRNA	64595822	64599467	64595822	ID=MsG0780039472.01.T01;Parent=MsG0780039472.01;Name=MsG0780039472.01.T01;_AED=0.28;_eAED=0.33;_QI=0\|0.2\|0.16\|1\|1\|1\|6\|524\|402
Chr7	exon	64595822	64596342	64595822	ID=MsG0780039472.01.T01:exon:17542;Parent=MsG0780039472.01.T01
Chr7	exon	64597265	64597369	64597265	ID=MsG0780039472.01.T01:exon:17543;Parent=MsG0780039472.01.T01
Chr7	exon	64597617	64597736	64597617	ID=MsG0780039472.01.T01:exon:17544;Parent=MsG0780039472.01.T01
Chr7	exon	64597830	64597962	64597830	ID=MsG0780039472.01.T01:exon:17545;Parent=MsG0780039472.01.T01
Chr7	exon	64598247	64598405	64598247	ID=MsG0780039472.01.T01:exon:17546;Parent=MsG0780039472.01.T01
Chr7	exon	64598773	64599467	64598773	ID=MsG0780039472.01.T01:exon:17547;Parent=MsG0780039472.01.T01
Chr7	CDS	64595822	64596342	64595822	ID=MsG0780039472.01.T01:cds;Parent=MsG0780039472.01.T01
Chr7	CDS	64597265	64597369	64597265	ID=MsG0780039472.01.T01:cds;Parent=MsG0780039472.01.T01
Chr7	CDS	64597617	64597736	64597617	ID=MsG0780039472.01.T01:cds;Parent=MsG0780039472.01.T01
Chr7	CDS	64597830	64597962	64597830	ID=MsG0780039472.01.T01:cds;Parent=MsG0780039472.01.T01
Chr7	CDS	64598247	64598405	64598247	ID=MsG0780039472.01.T01:cds;Parent=MsG0780039472.01.T01
Chr7	CDS	64598773	64598943	64598773	ID=MsG0780039472.01.T01:cds;Parent=MsG0780039472.01.T01
Chr7	three_prime_UTR	64598944	64599467	64598944	ID=MsG0780039472.01.T01:three_prime_utr;Parent=MsG0780039472.01.T01

Gene Sequence

>MsG0780039472.01.T01

ATGGACACTTCAAATCCAACTCTTGATTCCACCGCCGGCGACACCGAACCATTCCTCCGCCGCACTCTCCGCCGCACCATCCACCACACACCACCACTCCGCACCGCCACCCATTTCTTCCGTCACGCCAGCTCACATCGCATGATGCTCCGCGAACCATCAGTCCGTGTACGAGAACGAGCAGCAACGGAGGTGGAAAACCGGCAGAGAGAGTGGGCTTATTCGAAACCCGTTGTAGCACTTGATATAGCGTGGAACTTGTCGTTTCTTGTTGTTAGTGTTGTCGTTTTGGGGTTGAGTAGTGAAGAGGAGCCGTGTGTGCCTCTTAGGGTATGGATTTTGGGTTACTTGTTGCAGGGGTTGGTTCATTCGGTGAATGTTGTTTTGGAATTTAGAAGAAGGAGAAGGGGTAATCATTTGGAAGATGATGATGATTCTGTTTTGGAGAGTGGTTTACGGTGGCGTTTTAGTTCTGAGAGTGAATCTGATTTTGCTTCTGAGCATGAGAGTGAGGAAAATAGTTTCCATCACTACTCGTATAGAGCTGGTTTGACCTTGTTTTCTGCTTACCTTGCTCTAATTTTAACACCTATCTTTGTGCGAGGAGCTGTGCGCCGTGGTGATATTATCATCAAGCACATAGAGTCTGCAAATACCATTCTATCATTCATATGGTGGATTCTTGGGTTCTACTGGGTAACTGTAGGTGGTCAGAGTTTGACAAAGGATTCACCTCAGCTTTACTGGCTATGTATTACATTTCTTGCTTTCGACGTTGTCATTGTAGTGATTTGTGTTGCTGTTGCATGTCTCATTGGAATTGCTGTTCGTTGTTGTCTTCCATGCATACTTGCTATTTTGTATGCAGTGGCTGATCAGGGAGCAACCATGGAAGAGATTGATCAGTTGCCAAAATATAAGTTTAGAATGATAAAGGAATCTAAGGAAGAAGGGGATGCCCAAGAATCATCCAGAGGAGTGATGATGGAATGTGACAGTGATACAGCTTCTGAGCATGTTATTGCCTTAGAAGATGCAGAATGCTGTATCTGCCTTTCTGCCTATGATGATGGGGATGAACTTAGAGAACTTCCTTGCAACCACCATTTTCATTGTACATGCATCGACAAATGGCTGCTAATCTGTGCTACCTGCCCTCTCTGCAAATTTGACATTTTGAGCACTGATAACCCCAATCAAGAAGTTTGA

Protein sequence

>MsG0780039472.01.T01

MDTSNPTLDSTAGDTEPFLRRTLRRTIHHTPPLRTATHFFRHASSHRMMLREPSVRVRERAATEVENRQREWAYSKPVVALDIAWNLSFLVVSVVVLGLSSEEEPCVPLRVWILGYLLQGLVHSVNVVLEFRRRRRGNHLEDDDDSVLESGLRWRFSSESESDFASEHESEENSFHHYSYRAGLTLFSAYLALILTPIFVRGAVRRGDIIIKHIESANTILSFIWWILGFYWVTVGGQSLTKDSPQLYWLCITFLAFDVVIVVICVAVACLIGIAVRCCLPCILAILYAVADQGATMEEIDQLPKYKFRMIKESKEEGDAQESSRGVMMECDSDTASEHVIALEDAECCICLSAYDDGDELRELPCNHHFHCTCIDKWLLICATCPLCKFDILSTDNPNQEV*