AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011049.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011049.01.T01 MTR_2g098150 66.340 306 36 3 116 408 25 276 4.42e-124 360
MsG0280011049.01.T01 MTR_4g065640 57.627 295 58 4 125 407 34 273 3.50e-99 300
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011049.01.T01 AT3G20870 57.912 297 58 4 125 408 34 276 3.55e-105 312
MsG0280011049.01.T01 AT3G20870 57.912 297 58 4 125 408 34 276 3.55e-105 312
MsG0280011049.01.T01 AT3G20870 58.657 283 50 4 139 408 1 229 1.19e-100 299

Find 107 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACGATTGATTGATTAAT+TGG 0.073968 2:-78871331 None:intergenic
TTTAAATTGGCAACACTTTC+AGG 0.117036 2:+78874512 MsG0280011049.01.T01:CDS
AAACGCTTCTTCTGTGTTTC+TGG 0.170142 2:+78871251 MsG0280011049.01.T01:five_prime_UTR
TAAATGGCAGGCATTTAAAT+TGG 0.248604 2:+78874499 MsG0280011049.01.T01:CDS
GAAGATGCTTGGGCTATTAC+AGG 0.265818 2:+78872337 MsG0280011049.01.T01:CDS
AGTAGATATATCAATATATA+GGG 0.274943 2:+78876308 MsG0280011049.01.T01:three_prime_UTR
AGAAACACTGCCATTCCTTC+TGG 0.277475 2:-78873276 None:intergenic
TAGCCCAAGCATCTTCAAAT+TGG 0.286123 2:-78872330 None:intergenic
ACACCATCCTTATTTCCTTA+TGG 0.289085 2:+78874592 MsG0280011049.01.T01:CDS
GAAGGAATGGCAGTGTTTCT+TGG 0.317850 2:+78873279 MsG0280011049.01.T01:CDS
CGCCTGACCATAAGGAAATA+AGG 0.323739 2:-78874599 None:intergenic
CAGTAGATATATCAATATAT+AGG 0.326159 2:+78876307 MsG0280011049.01.T01:three_prime_UTR
GATTAATTGGGTTCCGAATT+CGG 0.331315 2:-78871318 None:intergenic
AATTGTTATTCATTTGCGTT+TGG 0.335108 2:+78871284 MsG0280011049.01.T01:five_prime_UTR
TTCAGGCTTTGCAGAACCCT+TGG 0.346800 2:+78874529 MsG0280011049.01.T01:CDS
CTTCCTTTGTTGTCAAATAG+TGG 0.354540 2:+78874659 MsG0280011049.01.T01:CDS
GCTTCTTGAAAGGCAACCTT+TGG 0.355006 2:+78872605 MsG0280011049.01.T01:CDS
TTAGGGGAAACCACAATCAT+AGG 0.370484 2:-78876342 None:intergenic
TAGGTTCTTGGATACCTTCA+TGG 0.371579 2:-78873304 None:intergenic
TGCAGATGTCAAGACTAAAA+AGG 0.382688 2:+78872812 MsG0280011049.01.T01:CDS
GACAACAAAGGAAGATTCAA+TGG 0.388960 2:-78874650 None:intergenic
GGGTAGTTATTATCCGAATT+CGG 0.389629 2:+78871305 MsG0280011049.01.T01:five_prime_UTR
CAAGAGTTTAAATGTGTGTA+TGG 0.392251 2:+78871500 MsG0280011049.01.T01:CDS
CTTTGTGTCGCAAAATAAAC+AGG 0.398062 2:-78873778 None:intergenic
CTTGAAGGTCTACTTGGATC+AGG 0.401715 2:+78874963 MsG0280011049.01.T01:CDS
TCAGGCTTTGCAGAACCCTT+GGG 0.403224 2:+78874530 MsG0280011049.01.T01:CDS
GAGCATATCATTCTTTGATC+TGG 0.407911 2:+78872558 MsG0280011049.01.T01:CDS
CAACGATTGATTGATTAATT+GGG 0.410138 2:-78871330 None:intergenic
CTCCCAATTTGAAGATGCTT+GGG 0.411775 2:+78872327 MsG0280011049.01.T01:CDS
ATCCTTATTTCCTTATGGTC+AGG 0.412767 2:+78874597 MsG0280011049.01.T01:CDS
ATTGTTATTCATTTGCGTTT+GGG 0.414589 2:+78871285 MsG0280011049.01.T01:five_prime_UTR
GAGATTCTTGAAGGTCTACT+TGG 0.418896 2:+78874957 MsG0280011049.01.T01:CDS
TTAAATCCTGAGATTCTTGA+AGG 0.419152 2:+78874948 MsG0280011049.01.T01:CDS
GCTCCCAATTTGAAGATGCT+TGG 0.424340 2:+78872326 MsG0280011049.01.T01:CDS
GATTACAGTTGGTGGAGTTA+TGG 0.426124 2:+78875062 MsG0280011049.01.T01:intron
ATCGGTAACTGTGCAATTCA+AGG 0.432081 2:-78876462 None:intergenic
AAGCATGGATTCTCAAGTTA+TGG 0.438402 2:+78871359 MsG0280011049.01.T01:exon
GAAGACAGCACACTCATATT+CGG 0.450526 2:-78876384 None:intergenic
GTCTACAAGCTTATCTCCTC+TGG 0.456092 2:-78876127 None:intergenic
GCTCTTGCTCTTTCTCTCGT+TGG 0.461709 2:+78871384 MsG0280011049.01.T01:CDS
AGCCCAAGCATCTTCAAATT+GGG 0.464299 2:-78872329 None:intergenic
TTAGAAAACAACTGCAGACT+AGG 0.470934 2:-78872492 None:intergenic
GTGGGAGTAAGTGTTGGCTC+CGG 0.474623 2:-78872789 None:intergenic
TCATAATGCTATAAACTCAC+TGG 0.476152 2:+78872582 MsG0280011049.01.T01:CDS
CTTCTTGAAAGGCAACCTTT+GGG 0.479367 2:+78872606 MsG0280011049.01.T01:CDS
AGTAGACCTTCAAGAATCTC+AGG 0.481478 2:-78874954 None:intergenic
AAAATATTTCATTCTGTGAA+GGG 0.484901 2:+78872514 MsG0280011049.01.T01:CDS
AGCATCTTCAAATTGGGAGC+TGG 0.485190 2:-78872323 None:intergenic
CTTGCTCTTTCTCTCGTTGG+TGG 0.487175 2:+78871387 MsG0280011049.01.T01:CDS
CAATACCTCGCCTGACCATA+AGG 0.488456 2:-78874607 None:intergenic
AGCTGATACTTAGAAAATAC+AGG 0.488889 2:-78876102 None:intergenic
TAAGCTGCTAGGGAATAGAT+AGG 0.492353 2:-78874928 None:intergenic
GATACATGATACAAGATTGA+TGG 0.504673 2:-78876422 None:intergenic
GAAGATATTGGTGCGTGCGT+TGG 0.514109 2:+78872396 MsG0280011049.01.T01:CDS
TGGGAGTAAGTGTTGGCTCC+GGG 0.520173 2:-78872788 None:intergenic
TCTCAGGATTTAAGCTGCTA+GGG 0.520198 2:-78874938 None:intergenic
CCTTCATGAAATGCTGCCGT+TGG 0.529277 2:+78875095 MsG0280011049.01.T01:CDS
GGCTGTATCGTTATTGTCAT+CGG 0.529476 2:-78876269 None:intergenic
TTAGTCTTGACATCTGCAGT+GGG 0.533039 2:-78872807 None:intergenic
TATGGTCAGGCGAGGTATTG+TGG 0.534941 2:+78874610 MsG0280011049.01.T01:CDS
TTTAGTCTTGACATCTGCAG+TGG 0.536010 2:-78872808 None:intergenic
ACAACAAAGGAAGATTCAAT+GGG 0.536970 2:-78874649 None:intergenic
CAATCGTTGAATTGAAAGCA+TGG 0.537229 2:+78871344 MsG0280011049.01.T01:exon
AACTCACTGGGCTTCTTGAA+AGG 0.539503 2:+78872595 MsG0280011049.01.T01:CDS
TAGAAAACAACTGCAGACTA+GGG 0.540466 2:-78872491 None:intergenic
TTATCACATTAGACAGAAGA+GGG 0.541314 2:-78872441 None:intergenic
CGTTGGCATCAACTTAGCAT+TGG 0.542660 2:+78873460 MsG0280011049.01.T01:CDS
ATACATTCCACCTATGATTG+TGG 0.546280 2:+78876332 MsG0280011049.01.T01:three_prime_UTR
TGTGAATAGGGTCTCCGCGT+TGG 0.550474 2:+78873443 MsG0280011049.01.T01:intron
GACGTGTCTTAGTAAATGGC+AGG 0.551871 2:+78874487 MsG0280011049.01.T01:intron
GGTGGTCTCAGCACTTCCAT+AGG 0.561864 2:+78871405 MsG0280011049.01.T01:CDS
TTTATCACATTAGACAGAAG+AGG 0.563012 2:-78872442 None:intergenic
AGTGTTTCTTGGATCCATGA+AGG 0.569456 2:+78873290 MsG0280011049.01.T01:CDS
ATCTCAGGATTTAAGCTGCT+AGG 0.570740 2:-78874939 None:intergenic
CCAACGGCAGCATTTCATGA+AGG 0.570759 2:-78875095 None:intergenic
TGGACAGAAGCAATCTGTAA+AGG 0.575130 2:+78875131 MsG0280011049.01.T01:CDS
CTTATTATTCATGAGCTCCA+CGG 0.577222 2:+78876170 MsG0280011049.01.T01:three_prime_UTR
TGCATCAAAATTCCTTCAGT+AGG 0.581846 2:+78876231 MsG0280011049.01.T01:three_prime_UTR
CAACGGCAGCATTTCATGAA+GGG 0.607338 2:-78875094 None:intergenic
CTACTGCTATCCTCATCAGA+TGG 0.607640 2:-78876290 None:intergenic
AGAGGAGATAAGCTTGTAGA+CGG 0.608173 2:+78876129 MsG0280011049.01.T01:exon
GATGCTTGGGCTATTACAGG+TGG 0.610233 2:+78872340 MsG0280011049.01.T01:CDS
CATAATGCTATAAACTCACT+GGG 0.612257 2:+78872583 MsG0280011049.01.T01:CDS
GAACCCTTGGGTGTTATCGT+AGG 0.612695 2:+78874542 MsG0280011049.01.T01:CDS
TCTGCAGTGGGAGTAAGTGT+TGG 0.614819 2:-78872795 None:intergenic
AACGATACAGCCATCTGATG+AGG 0.618613 2:+78876280 MsG0280011049.01.T01:three_prime_UTR
TAACCACTATTTGACAACAA+AGG 0.619165 2:-78874662 None:intergenic
TGGGATATTATGCAGAGCAA+TGG 0.621413 2:-78873483 None:intergenic
TCTAAGTATCAGCTTACCAG+AGG 0.621648 2:+78876111 MsG0280011049.01.T01:CDS
TTGTCAAATAGTGGTTATAG+CGG 0.622853 2:+78874668 MsG0280011049.01.T01:CDS
GGGGAAACCACAATCATAGG+TGG 0.625481 2:-78876339 None:intergenic
CATGATACAAGATTGATGGT+AGG 0.633255 2:-78876418 None:intergenic
TAAATGTGTGTATGGTTCTG+TGG 0.635488 2:+78871508 MsG0280011049.01.T01:CDS
TATTTCCTTATGGTCAGGCG+AGG 0.635993 2:+78874602 MsG0280011049.01.T01:CDS
GTAGATATATCAATATATAG+GGG 0.637931 2:+78876309 MsG0280011049.01.T01:three_prime_UTR
TGACCATAAGGAAATAAGGA+TGG 0.641161 2:-78874595 None:intergenic
TGAGCTCCACGGTATCATTG+TGG 0.641219 2:+78876181 MsG0280011049.01.T01:three_prime_UTR
GTTTGTGAGACTCCTACTGA+AGG 0.642430 2:-78876243 None:intergenic
ATCACATTAGACAGAAGAGG+GGG 0.657720 2:-78872439 None:intergenic
CCAGCATAATCAAAAGCCAA+CGG 0.658033 2:-78875111 None:intergenic
CATACCTACGATAACACCCA+AGG 0.670029 2:-78874546 None:intergenic
ATACCTACGATAACACCCAA+GGG 0.692186 2:-78874545 None:intergenic
GGATGGCTTTCATGTCTGCG+AGG 0.698456 2:+78875166 MsG0280011049.01.T01:CDS
CACACACCACAATGATACCG+TGG 0.703367 2:-78876187 None:intergenic
TATCACATTAGACAGAAGAG+GGG 0.715684 2:-78872440 None:intergenic
TGCTCTGCATAATATCCCAG+AGG 0.717086 2:+78873487 MsG0280011049.01.T01:CDS
ATGCTAAGTTGATGCCAACG+CGG 0.729213 2:-78873457 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTATTTTTTTTTTTT+GGG + Chr2:78875250-78875269 MsG0280011049.01.T01:intron 0.0%
!!! TTATTATTATTTTTTTTTTT+TGG + Chr2:78875249-78875268 MsG0280011049.01.T01:intron 0.0%
!! AGAAATAAACAAATAAAAAA+CGG - Chr2:78874458-78874477 None:intergenic 10.0%
!! TATTAATTAATCTTAAATCT+TGG + Chr2:78874377-78874396 MsG0280011049.01.T01:intron 10.0%
!!! AATTTTATATTAATTGTTGA+AGG + Chr2:78873348-78873367 MsG0280011049.01.T01:intron 10.0%
!!! ATTTTATAAAGAGAATAAAA+CGG + Chr2:78872032-78872051 MsG0280011049.01.T01:intron 10.0%
!!! TTATTATTTTTTTTTTTTGG+GGG + Chr2:78875252-78875271 MsG0280011049.01.T01:intron 10.0%
!!! TTTTTATTTGTTTATTTCTT+TGG + Chr2:78874459-78874478 MsG0280011049.01.T01:intron 10.0%
!! ACTTCATAAAGATAAAAAAA+TGG + Chr2:78876014-78876033 MsG0280011049.01.T01:intron 15.0%
!! AGTAGATATATCAATATATA+GGG + Chr2:78876308-78876327 MsG0280011049.01.T01:three_prime_UTR 15.0%
!! ATAATAATAATAAGCAAACA+AGG - Chr2:78875236-78875255 None:intergenic 15.0%
!! ATTCTTGAAATTAGAATAAA+GGG + Chr2:78872935-78872954 MsG0280011049.01.T01:intron 15.0%
!! CTATCAAAAATCTATATTTA+TGG - Chr2:78872907-78872926 None:intergenic 15.0%
!! GAAGTAAATTAAAACAAAAA+AGG - Chr2:78874172-78874191 None:intergenic 15.0%
!! TAAATCCGTAATTTAAAAAA+TGG - Chr2:78874072-78874091 None:intergenic 15.0%
!! TAAGATTAATTAATAACTCT+AGG - Chr2:78874372-78874391 None:intergenic 15.0%
!! TAATCTATTATATAGAAATC+AGG - Chr2:78871962-78871981 None:intergenic 15.0%
!!! AGCATAAATTTTATTTGTTA+AGG - Chr2:78874262-78874281 None:intergenic 15.0%
!!! TATTATTTTTTTTTTTTGGG+GGG + Chr2:78875253-78875272 MsG0280011049.01.T01:intron 15.0%
!!! TTTTATAAAGAGAATAAAAC+GGG + Chr2:78872033-78872052 MsG0280011049.01.T01:intron 15.0%
!! AAAAATATTTCATTCTGTGA+AGG + Chr2:78872513-78872532 MsG0280011049.01.T01:CDS 20.0%
!! AAAATATTTCATTCTGTGAA+GGG + Chr2:78872514-78872533 MsG0280011049.01.T01:CDS 20.0%
!! AATATGGAACAAGAAAATAT+AGG - Chr2:78873629-78873648 None:intergenic 20.0%
!! AGTAAATTTCAGTTACTAAA+TGG - Chr2:78875398-78875417 None:intergenic 20.0%
!! ATGATGTATGTGAAATAAAT+AGG + Chr2:78873947-78873966 MsG0280011049.01.T01:intron 20.0%
!! ATTCTATCTACTAGAAATAA+TGG + Chr2:78871983-78872002 MsG0280011049.01.T01:intron 20.0%
!! CAGTAGATATATCAATATAT+AGG + Chr2:78876307-78876326 MsG0280011049.01.T01:three_prime_UTR 20.0%
!! CATTCTTGAAATTAGAATAA+AGG + Chr2:78872934-78872953 MsG0280011049.01.T01:intron 20.0%
!! GTAGATATATCAATATATAG+GGG + Chr2:78876309-78876328 MsG0280011049.01.T01:three_prime_UTR 20.0%
!! TGAATGATTGTATAGAATAT+GGG - Chr2:78875663-78875682 None:intergenic 20.0%
!! TTCTTGAAATTAGAATAAAG+GGG + Chr2:78872936-78872955 MsG0280011049.01.T01:intron 20.0%
!! TTGAATGATTGTATAGAATA+TGG - Chr2:78875664-78875683 None:intergenic 20.0%
!!! AAATTTCATCTCCATTTTTT+AGG - Chr2:78875788-78875807 None:intergenic 20.0%
!!! AATACAGGCAATTTTTTAAT+TGG - Chr2:78875640-78875659 None:intergenic 20.0%
!!! AATTATCTTTTTACGCAAAT+TGG + Chr2:78875030-78875049 MsG0280011049.01.T01:intron 20.0%
!!! ATACAGGCAATTTTTTAATT+GGG - Chr2:78875639-78875658 None:intergenic 20.0%
!!! ATTATTTTTTTTTTTTGGGG+GGG + Chr2:78875254-78875273 MsG0280011049.01.T01:intron 20.0%
!!! ATTTATGCTTAAGAAAGTAT+TGG + Chr2:78874273-78874292 MsG0280011049.01.T01:intron 20.0%
!!! ATTTTTCATGTGTTTGTAAT+GGG + Chr2:78872248-78872267 MsG0280011049.01.T01:intron 20.0%
!!! GATTGCCATTTTTTAAATTA+CGG + Chr2:78874064-78874083 MsG0280011049.01.T01:intron 20.0%
!!! TATTATATCTAGAGTAAAAC+AGG - Chr2:78873535-78873554 None:intergenic 20.0%
!!! TGTTGAAAATATATTTTCAG+TGG + Chr2:78873975-78873994 MsG0280011049.01.T01:intron 20.0%
!!! TGTTTTTTCGTTAATAATGT+GGG - Chr2:78873683-78873702 None:intergenic 20.0%
!!! TTAGTTGTTTGTTTGTTTTT+TGG + Chr2:78872211-78872230 MsG0280011049.01.T01:intron 20.0%
!!! TTGTTTCTTTTGAATTTGTA+TGG + Chr2:78871555-78871574 MsG0280011049.01.T01:CDS 20.0%
!!! TTTCTTTTTGTTCATTTCTT+AGG + Chr2:78873234-78873253 MsG0280011049.01.T01:intron 20.0%
!!! TTTTATTGAAACTCAGAATA+TGG - Chr2:78873645-78873664 None:intergenic 20.0%
! AATGTTCAAGTAATATCTAG+GGG + Chr2:78873130-78873149 MsG0280011049.01.T01:intron 25.0%
! ACATACTATTAAATTCCCTA+AGG - Chr2:78872106-78872125 None:intergenic 25.0%
! CAAAAAACTACAAAAATGAG+AGG - Chr2:78872731-78872750 None:intergenic 25.0%
! CAACGATTGATTGATTAATT+GGG - Chr2:78871333-78871352 None:intergenic 25.0%
! GAATGTTCAAGTAATATCTA+GGG + Chr2:78873129-78873148 MsG0280011049.01.T01:intron 25.0%
! GATTATGTAAATAGTACATG+AGG - Chr2:78871890-78871909 None:intergenic 25.0%
! TACTTTGTAAGGAAAATGTT+AGG - Chr2:78873058-78873077 None:intergenic 25.0%
! TCAACGATTGATTGATTAAT+TGG - Chr2:78871334-78871353 None:intergenic 25.0%
! TGAATGTTCAAGTAATATCT+AGG + Chr2:78873128-78873147 MsG0280011049.01.T01:intron 25.0%
! TGGAAAATGTGAATTGATAT+TGG - Chr2:78873170-78873189 None:intergenic 25.0%
! TTACAAAAACAGTGAACAAT+TGG - Chr2:78873198-78873217 None:intergenic 25.0%
!! AATCCTCTTTGTACATTTTT+AGG - Chr2:78876363-78876382 None:intergenic 25.0%
!! AATGAGAGGATAAAAGATTT+TGG - Chr2:78872717-78872736 None:intergenic 25.0%
!! AATTGTTATTCATTTGCGTT+TGG + Chr2:78871284-78871303 MsG0280011049.01.T01:five_prime_UTR 25.0%
!! ACTATCAATGATGAATTTTC+TGG + Chr2:78875335-78875354 MsG0280011049.01.T01:intron 25.0%
!! ATCCTCTTTGTACATTTTTA+GGG - Chr2:78876362-78876381 None:intergenic 25.0%
!! ATTGTTATTCATTTGCGTTT+GGG + Chr2:78871285-78871304 MsG0280011049.01.T01:five_prime_UTR 25.0%
!! GAAAATTCATCATTGATAGT+TGG - Chr2:78875335-78875354 None:intergenic 25.0%
!! GATTTTTCATGTGTTTGTAA+TGG + Chr2:78872247-78872266 MsG0280011049.01.T01:intron 25.0%
!! TTTGTTTATTTCTTTGGTTC+TGG + Chr2:78874465-78874484 MsG0280011049.01.T01:intron 25.0%
!! TTTTCATAACACGAAGATAT+TGG + Chr2:78872384-78872403 MsG0280011049.01.T01:CDS 25.0%
!!! AACTTTTTAAGTTTTCCTGT+TGG + Chr2:78873806-78873825 MsG0280011049.01.T01:intron 25.0%
!!! CATATTTTAAGATGCTATGT+AGG + Chr2:78873703-78873722 MsG0280011049.01.T01:intron 25.0%
!!! GTGTTTTTTCGTTAATAATG+TGG - Chr2:78873684-78873703 None:intergenic 25.0%
!!! TCAATTTGTGTTCACTTTTT+GGG + Chr2:78875431-78875450 MsG0280011049.01.T01:intron 25.0%
!!! TCATTTTTGTAGTTTTTTGC+TGG + Chr2:78872732-78872751 MsG0280011049.01.T01:intron 25.0%
!!! TTATTTTTTTTTTTTGGGGG+GGG + Chr2:78875255-78875274 MsG0280011049.01.T01:intron 25.0%
!!! TTCAATTTGTGTTCACTTTT+TGG + Chr2:78875430-78875449 MsG0280011049.01.T01:intron 25.0%
!!! TTGCTGGAACAATTTTTTTA+GGG + Chr2:78873082-78873101 MsG0280011049.01.T01:intron 25.0%
!!! TTTGCTGGAACAATTTTTTT+AGG + Chr2:78873081-78873100 MsG0280011049.01.T01:intron 25.0%
!!! TTTTTGAGCATGAAAAAACT+CGG + Chr2:78875495-78875514 MsG0280011049.01.T01:intron 25.0%
AAAAAAAAAGAGCAGAGAGT+GGG - Chr2:78874833-78874852 None:intergenic 30.0%
AACAAACTTGAGCTTGTATT+TGG + Chr2:78874221-78874240 MsG0280011049.01.T01:intron 30.0%
AACAGCAGAACTCATTATTA+AGG - Chr2:78871928-78871947 None:intergenic 30.0%
AAGAACCTATTGATGTCATA+TGG + Chr2:78873318-78873337 MsG0280011049.01.T01:intron 30.0%
AAGATCCATATGACATCAAT+AGG - Chr2:78873326-78873345 None:intergenic 30.0%
AATAGTATGTTCGCTTGTAT+CGG + Chr2:78872116-78872135 MsG0280011049.01.T01:intron 30.0%
AATGTGAATTGATATTGGCA+TGG - Chr2:78873165-78873184 None:intergenic 30.0%
AATTAGAATAAAGGGGATGA+AGG + Chr2:78872943-78872962 MsG0280011049.01.T01:intron 30.0%
AATTTGCCAAAATCCAAAGT+TGG + Chr2:78875534-78875553 MsG0280011049.01.T01:intron 30.0%
ACAACAAAGGAAGATTCAAT+GGG - Chr2:78874652-78874671 None:intergenic 30.0%
AGAAAGTGAAAACAAACAGT+TGG + Chr2:78875365-78875384 MsG0280011049.01.T01:intron 30.0%
AGCTGATACTTAGAAAATAC+AGG - Chr2:78876105-78876124 None:intergenic 30.0%
ATATAATAGTCACGTTTGAG+TGG + Chr2:78873547-78873566 MsG0280011049.01.T01:intron 30.0%
ATATGACATCAATAGGTTCT+TGG - Chr2:78873319-78873338 None:intergenic 30.0%
ATGAAGTTAGAGAGAAACAT+AGG - Chr2:78871433-78871452 None:intergenic 30.0%
CAAGAGTTTAAATGTGTGTA+TGG + Chr2:78871500-78871519 MsG0280011049.01.T01:CDS 30.0%
CACATTCAGCAACATTAATT+AGG - Chr2:78876079-78876098 None:intergenic 30.0%
CAGCTTCTTGATATTACAAT+TGG + Chr2:78874998-78875017 MsG0280011049.01.T01:intron 30.0%
CATAATGCTATAAACTCACT+GGG + Chr2:78872583-78872602 MsG0280011049.01.T01:CDS 30.0%
CATATATCCTCCAATTGTAT+GGG + Chr2:78875842-78875861 MsG0280011049.01.T01:intron 30.0%
CATGCACAGTAATTTATTCA+CGG - Chr2:78875305-78875324 None:intergenic 30.0%
CATTATTAAGGAACAGTAGA+GGG - Chr2:78871916-78871935 None:intergenic 30.0%
CTATCTACTAGAAATAATGG+TGG + Chr2:78871986-78872005 MsG0280011049.01.T01:intron 30.0%
GAATAAGCTGAAAACAGTTT+AGG - Chr2:78871646-78871665 None:intergenic 30.0%
GAGAATAACTTATGACATGT+TGG + Chr2:78871701-78871720 MsG0280011049.01.T01:intron 30.0%
GATACATGATACAAGATTGA+TGG - Chr2:78876425-78876444 None:intergenic 30.0%
GGTGGATGTAAAAATCAATA+TGG + Chr2:78872004-78872023 MsG0280011049.01.T01:intron 30.0%
GTAAATAAATTGTGCTGTGA+AGG + Chr2:78874027-78874046 MsG0280011049.01.T01:intron 30.0%
TAAATGGCAGGCATTTAAAT+TGG + Chr2:78874499-78874518 MsG0280011049.01.T01:CDS 30.0%
TAACCACTATTTGACAACAA+AGG - Chr2:78874665-78874684 None:intergenic 30.0%
TAGCTATTCAAGTGTTATCT+CGG + Chr2:78873870-78873889 MsG0280011049.01.T01:intron 30.0%
TCAAAATCTTCTGCTTTCTA+GGG + Chr2:78873739-78873758 MsG0280011049.01.T01:intron 30.0%
TCATAATGCTATAAACTCAC+TGG + Chr2:78872582-78872601 MsG0280011049.01.T01:CDS 30.0%
TCATATATCCTCCAATTGTA+TGG + Chr2:78875841-78875860 MsG0280011049.01.T01:intron 30.0%
TCATTATTAAGGAACAGTAG+AGG - Chr2:78871917-78871936 None:intergenic 30.0%
TGTATAGAATATGGGAATAC+AGG - Chr2:78875655-78875674 None:intergenic 30.0%
TTAAATCCTGAGATTCTTGA+AGG + Chr2:78874948-78874967 MsG0280011049.01.T01:CDS 30.0%
TTATCACATTAGACAGAAGA+GGG - Chr2:78872444-78872463 None:intergenic 30.0%
TTCAAAATCTTCTGCTTTCT+AGG + Chr2:78873738-78873757 MsG0280011049.01.T01:intron 30.0%
TTCAGTTACTAAATGGTGTA+AGG - Chr2:78875391-78875410 None:intergenic 30.0%
TTCATTTCCATATGCTCTAT+AGG + Chr2:78871448-78871467 MsG0280011049.01.T01:intron 30.0%
TTCCACTGAATAAAACTTGT+TGG - Chr2:78872996-78873015 None:intergenic 30.0%
TTGTCAAATAGTGGTTATAG+CGG + Chr2:78874668-78874687 MsG0280011049.01.T01:CDS 30.0%
TTTAAATTGGCAACACTTTC+AGG + Chr2:78874512-78874531 MsG0280011049.01.T01:CDS 30.0%
TTTATCACATTAGACAGAAG+AGG - Chr2:78872445-78872464 None:intergenic 30.0%
! AGTTTACACAATTTTCCAGA+AGG + Chr2:78873261-78873280 MsG0280011049.01.T01:CDS 30.0%
! ATCAATGATGAATTTTCTGG+TGG + Chr2:78875338-78875357 MsG0280011049.01.T01:intron 30.0%
! CACAATTCTTTTGCAAGAAT+AGG - Chr2:78875608-78875627 None:intergenic 30.0%
! GCTGTTAAATCTTCAGATTT+TGG - Chr2:78872185-78872204 None:intergenic 30.0%
! TTTTCGTTAATAATGTGGGT+AGG - Chr2:78873679-78873698 None:intergenic 30.0%
!! AGTAGAGTTTTGTCAAATAG+CGG + Chr2:78874745-78874764 MsG0280011049.01.T01:intron 30.0%
!! CTGTATTCGAGTTTTTGATT+TGG + Chr2:78872465-78872484 MsG0280011049.01.T01:CDS 30.0%
!! CTTAAGAAAGTATTGGTTAC+AGG + Chr2:78874280-78874299 MsG0280011049.01.T01:intron 30.0%
!! TCCTCTTTGTACATTTTTAG+GGG - Chr2:78876361-78876380 None:intergenic 30.0%
!! TGAAGGAATTTTGATGCAAT+TGG - Chr2:78876229-78876248 None:intergenic 30.0%
!!! CTCTTTTTTTTTGACACTCA+GGG + Chr2:78874841-78874860 MsG0280011049.01.T01:intron 30.0%
!!! CTGTAAAGGCTGTATTTTTT+GGG + Chr2:78875145-78875164 MsG0280011049.01.T01:CDS 30.0%
!!! TCTGTAAAGGCTGTATTTTT+TGG + Chr2:78875144-78875163 MsG0280011049.01.T01:CDS 30.0%
!!! TGCTGGAACAATTTTTTTAG+GGG + Chr2:78873083-78873102 MsG0280011049.01.T01:intron 30.0%
!!! TTTTACGCAAATTGGTTCTA+TGG + Chr2:78875038-78875057 MsG0280011049.01.T01:intron 30.0%
AAAACGGGACAGTAATAAAG+TGG + Chr2:78872048-78872067 MsG0280011049.01.T01:intron 35.0%
AAACAGTCCTATAGAGCTTA+TGG - Chr2:78871669-78871688 None:intergenic 35.0%
AACAGTCCTATAGAGCTTAT+GGG - Chr2:78871668-78871687 None:intergenic 35.0%
AAGCATGGATTCTCAAGTTA+TGG + Chr2:78871359-78871378 MsG0280011049.01.T01:exon 35.0%
AAGCTATCCTATAGAGCATA+TGG - Chr2:78871458-78871477 None:intergenic 35.0%
ACAGTGAACAATTGGAAACA+TGG - Chr2:78873190-78873209 None:intergenic 35.0%
ATAAATTGTGCTGTGAAGGT+TGG + Chr2:78874031-78874050 MsG0280011049.01.T01:intron 35.0%
ATAAGCTCTATAGGACTGTT+TGG + Chr2:78871668-78871687 MsG0280011049.01.T01:intron 35.0%
ATACATTCCACCTATGATTG+TGG + Chr2:78876332-78876351 MsG0280011049.01.T01:three_prime_UTR 35.0%
ATACCAACTGACTATCATCA+GGG + Chr2:78875865-78875884 MsG0280011049.01.T01:intron 35.0%
ATGCAAGTACAACAATACAG+AGG - Chr2:78872875-78872894 None:intergenic 35.0%
CAAAAAAAAAGAGCAGAGAG+TGG - Chr2:78874834-78874853 None:intergenic 35.0%
CAATCGTTGAATTGAAAGCA+TGG + Chr2:78871344-78871363 MsG0280011049.01.T01:exon 35.0%
CCAGCAAAAACTACTTTGTA+AGG - Chr2:78873069-78873088 None:intergenic 35.0%
CTCTACTAAATAGCGTATTG+CGG - Chr2:78874732-78874751 None:intergenic 35.0%
CTTATTATTCATGAGCTCCA+CGG + Chr2:78876170-78876189 MsG0280011049.01.T01:three_prime_UTR 35.0%
CTTATTCCCATAAGCTCTAT+AGG + Chr2:78871659-78871678 MsG0280011049.01.T01:intron 35.0%
CTTTGTGTCGCAAAATAAAC+AGG - Chr2:78873781-78873800 None:intergenic 35.0%
GACAACAAAGGAAGATTCAA+TGG - Chr2:78874653-78874672 None:intergenic 35.0%
GAGCATATCATTCTTTGATC+TGG + Chr2:78872558-78872577 MsG0280011049.01.T01:CDS 35.0%
GATCGTTTCATTACCATTGA+AGG + Chr2:78872070-78872089 MsG0280011049.01.T01:intron 35.0%
GATTAATTGGGTTCCGAATT+CGG - Chr2:78871321-78871340 None:intergenic 35.0%
GCTCAAAAAACCAATGAATC+TGG - Chr2:78875484-78875503 None:intergenic 35.0%
GGGTAGTTATTATCCGAATT+CGG + Chr2:78871305-78871324 MsG0280011049.01.T01:five_prime_UTR 35.0%
TAAGCTCTATAGGACTGTTT+GGG + Chr2:78871669-78871688 MsG0280011049.01.T01:intron 35.0%
TAGAAAACAACTGCAGACTA+GGG - Chr2:78872494-78872513 None:intergenic 35.0%
TAGTCAATCGCAGAAAATAG+CGG - Chr2:78874799-78874818 None:intergenic 35.0%
TATAGAAATCAGGATGCTCT+TGG - Chr2:78871952-78871971 None:intergenic 35.0%
TATCACATTAGACAGAAGAG+GGG - Chr2:78872443-78872462 None:intergenic 35.0%
TATGACATGTTGGCATTCTA+GGG + Chr2:78871711-78871730 MsG0280011049.01.T01:intron 35.0%
TCAAACTGAAGTGGCATTAA+AGG - Chr2:78873406-78873425 None:intergenic 35.0%
TCAGAAACATCAAACTGAAG+TGG - Chr2:78873415-78873434 None:intergenic 35.0%
TCAGACTCTGATTGTATGTT+TGG - Chr2:78875909-78875928 None:intergenic 35.0%
TCCCCTAAAAATGTACAAAG+AGG + Chr2:78876357-78876376 MsG0280011049.01.T01:three_prime_UTR 35.0%
TGACCATAAGGAAATAAGGA+TGG - Chr2:78874598-78874617 None:intergenic 35.0%
TGCAGATGTCAAGACTAAAA+AGG + Chr2:78872812-78872831 MsG0280011049.01.T01:CDS 35.0%
TGCATCAAAATTCCTTCAGT+AGG + Chr2:78876231-78876250 MsG0280011049.01.T01:three_prime_UTR 35.0%
TTAGAAAACAACTGCAGACT+AGG - Chr2:78872495-78872514 None:intergenic 35.0%
TTATGACATGTTGGCATTCT+AGG + Chr2:78871710-78871729 MsG0280011049.01.T01:intron 35.0%
TTGTATTTGGATTTGAACGC+TGG + Chr2:78874234-78874253 MsG0280011049.01.T01:intron 35.0%
TTTCATTACCATTGAAGGAG+TGG + Chr2:78872075-78872094 MsG0280011049.01.T01:intron 35.0%
! ACACAATTTTCCAGAAGGAA+TGG + Chr2:78873266-78873285 MsG0280011049.01.T01:CDS 35.0%
! ACACCATCCTTATTTCCTTA+TGG + Chr2:78874592-78874611 MsG0280011049.01.T01:CDS 35.0%
! ATCCTTATTTCCTTATGGTC+AGG + Chr2:78874597-78874616 MsG0280011049.01.T01:CDS 35.0%
! CATGATACAAGATTGATGGT+AGG - Chr2:78876421-78876440 None:intergenic 35.0%
! CCTTACAAAGTAGTTTTTGC+TGG + Chr2:78873066-78873085 MsG0280011049.01.T01:intron 35.0%
! CTGACATGCTTTTGTGAATA+GGG + Chr2:78873431-78873450 MsG0280011049.01.T01:intron 35.0%
! CTTCCTTTGTTGTCAAATAG+TGG + Chr2:78874659-78874678 MsG0280011049.01.T01:CDS 35.0%
! TAAATGTGTGTATGGTTCTG+TGG + Chr2:78871508-78871527 MsG0280011049.01.T01:CDS 35.0%
! TCTGACATGCTTTTGTGAAT+AGG + Chr2:78873430-78873449 MsG0280011049.01.T01:intron 35.0%
! TGGGTGGATTTCCTAAAAAA+TGG + Chr2:78875774-78875793 MsG0280011049.01.T01:intron 35.0%
! TTTTCTGCGATTGACTACAT+TGG + Chr2:78874802-78874821 MsG0280011049.01.T01:intron 35.0%
!! TCGACATTGTTATTGACTCT+TGG - Chr2:78875585-78875604 None:intergenic 35.0%
!!! AAAGGCTGTATTTTTTGGGA+TGG + Chr2:78875149-78875168 MsG0280011049.01.T01:CDS 35.0%
!!! CTGTTTATTTTGCGACACAA+AGG + Chr2:78873779-78873798 MsG0280011049.01.T01:CDS 35.0%
!!! GCTCTTTTTTTTTGACACTC+AGG + Chr2:78874840-78874859 MsG0280011049.01.T01:intron 35.0%
!!! TATTTTCAGTGGCTTTGAGA+AGG + Chr2:78873986-78874005 MsG0280011049.01.T01:intron 35.0%
AAACGCTTCTTCTGTGTTTC+TGG + Chr2:78871251-78871270 MsG0280011049.01.T01:five_prime_UTR 40.0%
AAATGCAACAACGTACCCAA+AGG - Chr2:78872624-78872643 None:intergenic 40.0%
AGAGGAGATAAGCTTGTAGA+CGG + Chr2:78876129-78876148 MsG0280011049.01.T01:exon 40.0%
AGCCCAAGCATCTTCAAATT+GGG - Chr2:78872332-78872351 None:intergenic 40.0%
AGTAGACCTTCAAGAATCTC+AGG - Chr2:78874957-78874976 None:intergenic 40.0%
AGTGTTTCTTGGATCCATGA+AGG + Chr2:78873290-78873309 MsG0280011049.01.T01:CDS 40.0%
ATACCTACGATAACACCCAA+GGG - Chr2:78874548-78874567 None:intergenic 40.0%
ATCACATTAGACAGAAGAGG+GGG - Chr2:78872442-78872461 None:intergenic 40.0%
ATCTCAGGATTTAAGCTGCT+AGG - Chr2:78874942-78874961 None:intergenic 40.0%
ATTGTATGTTTGGAGGTGGA+TGG - Chr2:78875899-78875918 None:intergenic 40.0%
CAGTGGAATTATACAGCTGT+AGG + Chr2:78873008-78873027 MsG0280011049.01.T01:intron 40.0%
CCAAGACTCTGGTCATAATA+AGG - Chr2:78875728-78875747 None:intergenic 40.0%
CCAGCATAATCAAAAGCCAA+CGG - Chr2:78875114-78875133 None:intergenic 40.0%
CCTTATTATGACCAGAGTCT+TGG + Chr2:78875725-78875744 MsG0280011049.01.T01:intron 40.0%
CTAGGGTAGCTAATGAAAAC+AGG + Chr2:78871728-78871747 MsG0280011049.01.T01:intron 40.0%
CTCCCAATTTGAAGATGCTT+GGG + Chr2:78872327-78872346 MsG0280011049.01.T01:CDS 40.0%
CTTCTTGAAAGGCAACCTTT+GGG + Chr2:78872606-78872625 MsG0280011049.01.T01:CDS 40.0%
GAAACAACAGCCAAAGATTG+AGG - Chr2:78875942-78875961 None:intergenic 40.0%
GAAGACAGCACACTCATATT+CGG - Chr2:78876387-78876406 None:intergenic 40.0%
GACTCTGATTGTATGTTTGG+AGG - Chr2:78875906-78875925 None:intergenic 40.0%
GAGAGAAACATAGGTACCTA+TGG - Chr2:78871424-78871443 None:intergenic 40.0%
GAGATTCTTGAAGGTCTACT+TGG + Chr2:78874957-78874976 MsG0280011049.01.T01:CDS 40.0%
GATACCAACTGACTATCATC+AGG + Chr2:78875864-78875883 MsG0280011049.01.T01:intron 40.0%
GCAAGAAAAATTGCACCTCT+GGG - Chr2:78873505-78873524 None:intergenic 40.0%
GGAATTATACAGCTGTAGGT+AGG + Chr2:78873012-78873031 MsG0280011049.01.T01:intron 40.0%
GGCTGTATCGTTATTGTCAT+CGG - Chr2:78876272-78876291 None:intergenic 40.0%
GGTTCTATGGTGATTACAGT+TGG + Chr2:78875051-78875070 MsG0280011049.01.T01:intron 40.0%
GTATTGTTGTACTTGCATCG+TGG + Chr2:78872877-78872896 MsG0280011049.01.T01:intron 40.0%
GTTGTCAATCAATGTGACAC+AGG + Chr2:78872278-78872297 MsG0280011049.01.T01:intron 40.0%
TAAGCTGCTAGGGAATAGAT+AGG - Chr2:78874931-78874950 None:intergenic 40.0%
TACCAACTGACTATCATCAG+GGG + Chr2:78875866-78875885 MsG0280011049.01.T01:intron 40.0%
TAGAATAAAGGGGATGAAGG+AGG + Chr2:78872946-78872965 MsG0280011049.01.T01:intron 40.0%
TAGCCCAAGCATCTTCAAAT+TGG - Chr2:78872333-78872352 None:intergenic 40.0%
TAGGTTCTTGGATACCTTCA+TGG - Chr2:78873307-78873326 None:intergenic 40.0%
TATCAGTCACATTGCAGGAT+AGG - Chr2:78875460-78875479 None:intergenic 40.0%
TCTAAGTATCAGCTTACCAG+AGG + Chr2:78876111-78876130 MsG0280011049.01.T01:CDS 40.0%
TCTATGGTGATTACAGTTGG+TGG + Chr2:78875054-78875073 MsG0280011049.01.T01:intron 40.0%
TCTCAGGATTTAAGCTGCTA+GGG - Chr2:78874941-78874960 None:intergenic 40.0%
TCTGATTGTATGTTTGGAGG+TGG - Chr2:78875903-78875922 None:intergenic 40.0%
TCTGGACGTGTCTTAGTAAA+TGG + Chr2:78874483-78874502 MsG0280011049.01.T01:intron 40.0%
TGACTGATAGCCAGATTCAT+TGG + Chr2:78875471-78875490 MsG0280011049.01.T01:intron 40.0%
TGCAAGAAAAATTGCACCTC+TGG - Chr2:78873506-78873525 None:intergenic 40.0%
TGGACAGAAGCAATCTGTAA+AGG + Chr2:78875131-78875150 MsG0280011049.01.T01:CDS 40.0%
TGGGATATTATGCAGAGCAA+TGG - Chr2:78873486-78873505 None:intergenic 40.0%
TGGTTACAGGATGCAATGAT+GGG + Chr2:78874293-78874312 MsG0280011049.01.T01:intron 40.0%
TTACAAAAGCTTGAGCCAAC+AGG - Chr2:78873824-78873843 None:intergenic 40.0%
TTAGGGGAAACCACAATCAT+AGG - Chr2:78876345-78876364 None:intergenic 40.0%
TTGCTACCTTGTTCATCGAT+TGG + Chr2:78875754-78875773 MsG0280011049.01.T01:intron 40.0%
TTGGTATCCCATACAATTGG+AGG - Chr2:78875852-78875871 None:intergenic 40.0%
TTGGTTACAGGATGCAATGA+TGG + Chr2:78874292-78874311 MsG0280011049.01.T01:intron 40.0%
! CAGTTGGTATCCCATACAAT+TGG - Chr2:78875855-78875874 None:intergenic 40.0%
! CCAAAATCCAAAGTTGGTTG+TGG + Chr2:78875540-78875559 MsG0280011049.01.T01:intron 40.0%
! CCACAACCAACTTTGGATTT+TGG - Chr2:78875543-78875562 None:intergenic 40.0%
! TGCTACCTTGTTCATCGATT+GGG + Chr2:78875755-78875774 MsG0280011049.01.T01:intron 40.0%
!! GATTACAGTTGGTGGAGTTA+TGG + Chr2:78875062-78875081 MsG0280011049.01.T01:intron 40.0%
!! TGCTGTAGTCAGTTTTATCC+CGG + Chr2:78872770-78872789 MsG0280011049.01.T01:CDS 40.0%
!! TTAGTCTTGACATCTGCAGT+GGG - Chr2:78872810-78872829 None:intergenic 40.0%
!! TTTAGTCTTGACATCTGCAG+TGG - Chr2:78872811-78872830 None:intergenic 40.0%
!!! CGCCAACAAGTTTTATTCAG+TGG + Chr2:78872991-78873010 MsG0280011049.01.T01:intron 40.0%
!!! TTTTTTTTTTTGGGGGGGGA+GGG + Chr2:78875259-78875278 MsG0280011049.01.T01:intron 40.0%
!!! TTTTTTTTTTTTGGGGGGGG+AGG + Chr2:78875258-78875277 MsG0280011049.01.T01:intron 40.0%
AACGATACAGCCATCTGATG+AGG + Chr2:78876280-78876299 MsG0280011049.01.T01:three_prime_UTR 45.0%
AACTCACTGGGCTTCTTGAA+AGG + Chr2:78872595-78872614 MsG0280011049.01.T01:CDS 45.0%
AGAAACACTGCCATTCCTTC+TGG - Chr2:78873279-78873298 None:intergenic 45.0%
AGCAATTCAGTCCAAGACTC+TGG - Chr2:78875739-78875758 None:intergenic 45.0%
AGCATCTTCAAATTGGGAGC+TGG - Chr2:78872326-78872345 None:intergenic 45.0%
ATCACACTTCACGTGTGACA+GGG - Chr2:78875980-78875999 None:intergenic 45.0%
ATCCACCCAATCGATGAACA+AGG - Chr2:78875763-78875782 None:intergenic 45.0%
ATCGAGGACTACAAGGAAAG+TGG - Chr2:78873595-78873614 None:intergenic 45.0%
CAACGGCAGCATTTCATGAA+GGG - Chr2:78875097-78875116 None:intergenic 45.0%
CATACCTACGATAACACCCA+AGG - Chr2:78874549-78874568 None:intergenic 45.0%
CATTACCATTGAAGGAGTGG+TGG + Chr2:78872078-78872097 MsG0280011049.01.T01:intron 45.0%
CGCCTGACCATAAGGAAATA+AGG - Chr2:78874602-78874621 None:intergenic 45.0%
CGTTGGCATCAACTTAGCAT+TGG + Chr2:78873460-78873479 MsG0280011049.01.T01:CDS 45.0%
CTACTGCTATCCTCATCAGA+TGG - Chr2:78876293-78876312 None:intergenic 45.0%
CTTGAAGGTCTACTTGGATC+AGG + Chr2:78874963-78874982 MsG0280011049.01.T01:CDS 45.0%
GAAGATGCTTGGGCTATTAC+AGG + Chr2:78872337-78872356 MsG0280011049.01.T01:CDS 45.0%
GAAGGAATGGCAGTGTTTCT+TGG + Chr2:78873279-78873298 MsG0280011049.01.T01:CDS 45.0%
GACGTGTCTTAGTAAATGGC+AGG + Chr2:78874487-78874506 MsG0280011049.01.T01:intron 45.0%
GCTCCCAATTTGAAGATGCT+TGG + Chr2:78872326-78872345 MsG0280011049.01.T01:CDS 45.0%
GCTTCTTGAAAGGCAACCTT+TGG + Chr2:78872605-78872624 MsG0280011049.01.T01:CDS 45.0%
GTCTACAAGCTTATCTCCTC+TGG - Chr2:78876130-78876149 None:intergenic 45.0%
GTTATCTCGGATTGCTATGC+TGG + Chr2:78873883-78873902 MsG0280011049.01.T01:intron 45.0%
GTTTGTGAGACTCCTACTGA+AGG - Chr2:78876246-78876265 None:intergenic 45.0%
TATCACACTTCACGTGTGAC+AGG - Chr2:78875981-78876000 None:intergenic 45.0%
TATTTCCTTATGGTCAGGCG+AGG + Chr2:78874602-78874621 MsG0280011049.01.T01:CDS 45.0%
TGCTCTGCATAATATCCCAG+AGG + Chr2:78873487-78873506 MsG0280011049.01.T01:CDS 45.0%
TGTGACAGGGATGAAAAAGC+AGG - Chr2:78875967-78875986 None:intergenic 45.0%
! AATCCAAAGTTGGTTGTGGC+AGG + Chr2:78875544-78875563 MsG0280011049.01.T01:intron 45.0%
! ATCCAAAGTTGGTTGTGGCA+GGG + Chr2:78875545-78875564 MsG0280011049.01.T01:intron 45.0%
! TACCTTGTTCATCGATTGGG+TGG + Chr2:78875758-78875777 MsG0280011049.01.T01:intron 45.0%
!! AGAAAGCATCGAGGACTACA+AGG - Chr2:78873602-78873621 None:intergenic 45.0%
!! ATAGCGGTGCTATAGTGTAG+CGG + Chr2:78874684-78874703 MsG0280011049.01.T01:intron 45.0%
!! ATAGGAGCAAGAAAGCATCG+AGG - Chr2:78873611-78873630 None:intergenic 45.0%
!! ATGCTAAGTTGATGCCAACG+CGG - Chr2:78873460-78873479 None:intergenic 45.0%
!! TGTATCGGTTGTAGCTCTTG+TGG + Chr2:78872131-78872150 MsG0280011049.01.T01:intron 45.0%
!!! CCGTTGGCTTTTGATTATGC+TGG + Chr2:78875111-78875130 MsG0280011049.01.T01:CDS 45.0%
!!! TTTTTTTTTTGGGGGGGGAG+GGG + Chr2:78875260-78875279 MsG0280011049.01.T01:intron 45.0%
!!! ATTATTATTTTTTTTTTTTG+GGG + Chr2:78875251-78875270 MsG0280011049.01.T01:intron 5.0%
ACCTCTTGTCGTCATGGCAA+TGG - Chr2:78874104-78874123 None:intergenic 50.0%
AGGTTCCACCACTCCTTCAA+TGG - Chr2:78872086-78872105 None:intergenic 50.0%
CAATACCTCGCCTGACCATA+AGG - Chr2:78874610-78874629 None:intergenic 50.0%
CACACACCACAATGATACCG+TGG - Chr2:78876190-78876209 None:intergenic 50.0%
CCAACGGCAGCATTTCATGA+AGG - Chr2:78875098-78875117 None:intergenic 50.0%
CCTTCATGAAATGCTGCCGT+TGG + Chr2:78875095-78875114 MsG0280011049.01.T01:CDS 50.0%
CTGGCTATCAGTCACATTGC+AGG - Chr2:78875465-78875484 None:intergenic 50.0%
CTTGCTCTTTCTCTCGTTGG+TGG + Chr2:78871387-78871406 MsG0280011049.01.T01:CDS 50.0%
GAAGATATTGGTGCGTGCGT+TGG + Chr2:78872396-78872415 MsG0280011049.01.T01:CDS 50.0%
GATGCTTGGGCTATTACAGG+TGG + Chr2:78872340-78872359 MsG0280011049.01.T01:CDS 50.0%
GCGTCTTGCACCTCAATCTT+TGG + Chr2:78875929-78875948 MsG0280011049.01.T01:intron 50.0%
GCTCTTGCTCTTTCTCTCGT+TGG + Chr2:78871384-78871403 MsG0280011049.01.T01:CDS 50.0%
GGGGAAACCACAATCATAGG+TGG - Chr2:78876342-78876361 None:intergenic 50.0%
TAAAGGGGATGAAGGAGGCA+AGG + Chr2:78872951-78872970 MsG0280011049.01.T01:intron 50.0%
TCAGGCTTTGCAGAACCCTT+GGG + Chr2:78874530-78874549 MsG0280011049.01.T01:CDS 50.0%
TCTGCAGTGGGAGTAAGTGT+TGG - Chr2:78872798-78872817 None:intergenic 50.0%
TGAGCTCCACGGTATCATTG+TGG + Chr2:78876181-78876200 MsG0280011049.01.T01:three_prime_UTR 50.0%
TGGTCAGAACTCACACGAGA+GGG - Chr2:78872697-78872716 None:intergenic 50.0%
TTCAGGCTTTGCAGAACCCT+TGG + Chr2:78874529-78874548 MsG0280011049.01.T01:CDS 50.0%
TTGGTCAGAACTCACACGAG+AGG - Chr2:78872698-78872717 None:intergenic 50.0%
! GAACCCTTGGGTGTTATCGT+AGG + Chr2:78874542-78874561 MsG0280011049.01.T01:CDS 50.0%
! GAAGGAGTGGTGGAACCTTA+GGG + Chr2:78872088-78872107 MsG0280011049.01.T01:intron 50.0%
! TCCAAAGTTGGTTGTGGCAG+GGG + Chr2:78875546-78875565 MsG0280011049.01.T01:intron 50.0%
! TCTGTGAAGGGTTTTGCTGC+TGG + Chr2:78872526-78872545 MsG0280011049.01.T01:CDS 50.0%
! TGAAGGAGTGGTGGAACCTT+AGG + Chr2:78872087-78872106 MsG0280011049.01.T01:intron 50.0%
!! GCTTGGCTGGTTTGTGTTGA+TGG + Chr2:78874128-78874147 MsG0280011049.01.T01:intron 50.0%
!! TATGGTCAGGCGAGGTATTG+TGG + Chr2:78874610-78874629 MsG0280011049.01.T01:CDS 50.0%
!!! TTTTTTTTTGGGGGGGGAGG+GGG + Chr2:78875261-78875280 MsG0280011049.01.T01:intron 50.0%
ACCCCTGCCACAACCAACTT+TGG - Chr2:78875550-78875569 None:intergenic 55.0%
GCCATTGCCATGACGACAAG+AGG + Chr2:78874100-78874119 MsG0280011049.01.T01:intron 55.0%
GGATGGCTTTCATGTCTGCG+AGG + Chr2:78875166-78875185 MsG0280011049.01.T01:CDS 55.0%
GGCCCCTGATGATAGTCAGT+TGG - Chr2:78875871-78875890 None:intergenic 55.0%
GGTCAGAACTCACACGAGAG+GGG - Chr2:78872696-78872715 None:intergenic 55.0%
GGTGGTCTCAGCACTTCCAT+AGG + Chr2:78871405-78871424 MsG0280011049.01.T01:CDS 55.0%
GTTTGGAGGTGGATGGTGCA+AGG - Chr2:78875892-78875911 None:intergenic 55.0%
TGTGAATAGGGTCTCCGCGT+TGG + Chr2:78873443-78873462 MsG0280011049.01.T01:intron 55.0%
!! GTGGGAGTAAGTGTTGGCTC+CGG - Chr2:78872792-78872811 None:intergenic 55.0%
!! TGGGAGTAAGTGTTGGCTCC+GGG - Chr2:78872791-78872810 None:intergenic 55.0%
!!! TTTTTTTTGGGGGGGGAGGG+GGG + Chr2:78875262-78875281 MsG0280011049.01.T01:intron 55.0%
GCCAGCACCTCTTGTCGTCA+TGG - Chr2:78874110-78874129 None:intergenic 60.0%
! GCCATGACGACAAGAGGTGC+TGG + Chr2:78874106-78874125 MsG0280011049.01.T01:intron 60.0%
!! ACAAGAGGTGCTGGCTTGGC+TGG + Chr2:78874115-78874134 MsG0280011049.01.T01:intron 60.0%
!! GACGACAAGAGGTGCTGGCT+TGG + Chr2:78874111-78874130 MsG0280011049.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 78871235 78876481 78871235 ID=MsG0280011049.01;Name=MsG0280011049.01
Chr2 mRNA 78871235 78876481 78871235 ID=MsG0280011049.01.T01;Parent=MsG0280011049.01;Name=MsG0280011049.01.T01;_AED=0.49;_eAED=0.58;_QI=128|0.6|0.54|1|0.4|0.45|11|334|408
Chr2 exon 78871235 78871426 78871235 ID=MsG0280011049.01.T01:exon:17359;Parent=MsG0280011049.01.T01
Chr2 exon 78871492 78871588 78871492 ID=MsG0280011049.01.T01:exon:17360;Parent=MsG0280011049.01.T01
Chr2 exon 78872300 78872627 78872300 ID=MsG0280011049.01.T01:exon:17361;Parent=MsG0280011049.01.T01
Chr2 exon 78872744 78872876 78872744 ID=MsG0280011049.01.T01:exon:17362;Parent=MsG0280011049.01.T01
Chr2 exon 78873256 78873311 78873256 ID=MsG0280011049.01.T01:exon:17363;Parent=MsG0280011049.01.T01
Chr2 exon 78873452 78873508 78873452 ID=MsG0280011049.01.T01:exon:17364;Parent=MsG0280011049.01.T01
Chr2 exon 78873760 78873800 78873760 ID=MsG0280011049.01.T01:exon:17365;Parent=MsG0280011049.01.T01
Chr2 exon 78874499 78874689 78874499 ID=MsG0280011049.01.T01:exon:17366;Parent=MsG0280011049.01.T01
Chr2 exon 78874889 78874984 78874889 ID=MsG0280011049.01.T01:exon:17367;Parent=MsG0280011049.01.T01
Chr2 exon 78875070 78875187 78875070 ID=MsG0280011049.01.T01:exon:17368;Parent=MsG0280011049.01.T01
Chr2 exon 78876102 78876481 78876102 ID=MsG0280011049.01.T01:exon:17369;Parent=MsG0280011049.01.T01
Chr2 five_prime_UTR 78871235 78871362 78871235 ID=MsG0280011049.01.T01:five_prime_utr;Parent=MsG0280011049.01.T01
Chr2 CDS 78871363 78871426 78871363 ID=MsG0280011049.01.T01:cds;Parent=MsG0280011049.01.T01
Chr2 CDS 78871492 78871588 78871492 ID=MsG0280011049.01.T01:cds;Parent=MsG0280011049.01.T01
Chr2 CDS 78872300 78872627 78872300 ID=MsG0280011049.01.T01:cds;Parent=MsG0280011049.01.T01
Chr2 CDS 78872744 78872876 78872744 ID=MsG0280011049.01.T01:cds;Parent=MsG0280011049.01.T01
Chr2 CDS 78873256 78873311 78873256 ID=MsG0280011049.01.T01:cds;Parent=MsG0280011049.01.T01
Chr2 CDS 78873452 78873508 78873452 ID=MsG0280011049.01.T01:cds;Parent=MsG0280011049.01.T01
Chr2 CDS 78873760 78873800 78873760 ID=MsG0280011049.01.T01:cds;Parent=MsG0280011049.01.T01
Chr2 CDS 78874499 78874689 78874499 ID=MsG0280011049.01.T01:cds;Parent=MsG0280011049.01.T01
Chr2 CDS 78874889 78874984 78874889 ID=MsG0280011049.01.T01:cds;Parent=MsG0280011049.01.T01
Chr2 CDS 78875070 78875187 78875070 ID=MsG0280011049.01.T01:cds;Parent=MsG0280011049.01.T01
Chr2 CDS 78876102 78876147 78876102 ID=MsG0280011049.01.T01:cds;Parent=MsG0280011049.01.T01
Chr2 three_prime_UTR 78876148 78876481 78876148 ID=MsG0280011049.01.T01:three_prime_utr;Parent=MsG0280011049.01.T01
Gene Sequence

>MsG0280011049.01.T01

ATGGATTCTCAAGTTATGGTAGCTCTTGCTCTTTCTCTCGTTGGTGGTCTCAGCACTTCCATAGCGATTATACAAGAGTTTAAATGTGTGTATGGTTCTGTGGCGACAAAAATTGATTTTGAATCAATTGTTTCTTTTGAATTTGTATGGACTAAAAATGAGTGCGCTTTTTGTAATTATCAAGCCAGCTCCCAATTTGAAGATGCTTGGGCTATTACAGGTGGTTTTTTTCTTTTCAAAACTATTTTTCATAACACGAAGATATTGGTGCGTGCGTTGGTTCATTTAGAATCTCTGTGTCCCCCTCTTCTGTCTAATGTGATAAACTGTATTCGAGTTTTTGATTTGGTTACCCTAGTCTGCAGTTGTTTTCTAAAAATATTTCATTCTGTGAAGGGTTTTGCTGCTGGTTTGATGCTGAGCATATCATTCTTTGATCTGGCTCATAATGCTATAAACTCACTGGGCTTCTTGAAAGGCAACCTTTGGTTTTTTGCTGGTGTTATATTCTTTGCTGCTGTAGTCAGTTTTATCCCGGAGCCAACACTTACTCCCACTGCAGATGTCAAGACTAAAAAGGTTTTAATGAATTTGTCTCTTACAAATGACTATTATTACCTCTGCATAAGTTTACACAATTTTCCAGAAGGAATGGCAGTGTTTCTTGGATCCATGAAGGGTCTCCGCGTTGGCATCAACTTAGCATTGGCCATTGCTCTGCATAATATCCCAGAGGGTGTTGCTGTTGCACTTCCTGTTTATTTTGCGACACAAAGTAAATGGCAGGCATTTAAATTGGCAACACTTTCAGGCTTTGCAGAACCCTTGGGTGTTATCGTAGGTATGTCATCTGCTTTATGTTGCTTTGCACACCATCCTTATTTCCTTATGGTCAGGCGAGGTATTGTGGCTATTTCACAATTCTGCCCATTGAATCTTCCTTTGTTGTCAAATAGTGGTTATAGCGATGAACTTAATTTGATGATTTCTTTTTCTTTCTCTGTAGCCTATCTATTCCCTAGCAGCTTAAATCCTGAGATTCTTGAAGGTCTACTTGGATCAGTTGGTGGAGTTATGGCTTTTCTGACCCTTCATGAAATGCTGCCGTTGGCTTTTGATTATGCTGGACAGAAGCAATCTGTAAAGGCTGTATTTTTTGGGATGGCTTTCATGTCTGCGAGCCTGTATTTTCTAAGTATCAGCTTACCAGAGGAGATAAGCTTGTAG
Protein sequence

>MsG0280011049.01.T01

MDSQVMVALALSLVGGLSTSIAIIQEFKCVYGSVATKIDFESIVSFEFVWTKNECAFCNYQASSQFEDAWAITGGFFLFKTIFHNTKILVRALVHLESLCPPLLSNVINCIRVFDLVTLVCSCFLKIFHSVKGFAAGLMLSISFFDLAHNAINSLGFLKGNLWFFAGVIFFAAVVSFIPEPTLTPTADVKTKKVLMNLSLTNDYYYLCISLHNFPEGMAVFLGSMKGLRVGINLALAIALHNIPEGVAVALPVYFATQSKWQAFKLATLSGFAEPLGVIVGMSSALCCFAHHPYFLMVRRGIVAISQFCPLNLPLLSNSGYSDELNLMISFSFSVAYLFPSSLNPEILEGLLGSVGGVMAFLTLHEMLPLAFDYAGQKQSVKAVFFGMAFMSASLYFLSISLPEEISL*