Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012524.01.T01 | XP_003599013.1 | 92.857 | 98 | 7 | 0 | 45 | 142 | 415 | 512 | 1.29E-56 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012524.01.T01 | A2SY66 | 81.818 | 99 | 18 | 0 | 42 | 140 | 411 | 509 | 4.09E-52 | 176 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012524.01.T01 | G7IZC8 | 92.857 | 98 | 7 | 0 | 45 | 142 | 415 | 512 | 6.14e-57 | 196 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048773.01 | MsG0380012524.01 | 0.813511 | 2.467157e-51 | 1.614374e-48 |
| MsG0180000292.01 | MsG0380012524.01 | 0.801133 | 1.039801e-48 | 4.927858e-46 |
| MsG0180004246.01 | MsG0380012524.01 | 0.801080 | 1.066006e-48 | 5.045269e-46 |
| MsG0180005039.01 | MsG0380012524.01 | 0.807382 | 5.194963e-50 | 2.889334e-47 |
| MsG0180005051.01 | MsG0380012524.01 | 0.805208 | 1.491747e-49 | 7.845628e-47 |
| MsG0380012524.01 | MsG0380012525.01 | 0.877523 | 5.871453e-69 | 2.961285e-65 |
| MsG0380012524.01 | MsG0380014297.01 | -0.810430 | 1.157069e-50 | 6.973009e-48 |
| MsG0380012524.01 | MsG0380016036.01 | 0.819413 | 1.176684e-52 | 9.048641e-50 |
| MsG0380012524.01 | MsG0380017423.01 | 0.804709 | 1.896259e-49 | 9.846022e-47 |
| MsG0380012524.01 | MsG0380018069.01 | 0.804022 | 2.636886e-49 | 1.345163e-46 |
| MsG0380012524.01 | MsG0480023661.01 | 0.810169 | 1.317513e-50 | 7.885779e-48 |
| MsG0380012524.01 | MsG0580025256.01 | 0.801651 | 8.144036e-49 | 3.910117e-46 |
| MsG0380012524.01 | MsG0580025859.01 | 0.814831 | 1.261129e-51 | 8.552004e-49 |
| MsG0380012524.01 | MsG0580026271.01 | 0.804013 | 2.648455e-49 | 1.350747e-46 |
| MsG0380012524.01 | MsG0580027394.01 | 0.806666 | 7.364804e-50 | 4.020498e-47 |
| MsG0380012524.01 | MsG0580029353.01 | 0.814295 | 1.656545e-51 | 1.107271e-48 |
| MsG0380012524.01 | MsG0580029529.01 | 0.819081 | 1.400624e-52 | 1.067180e-49 |
| MsG0380012524.01 | MsG0680035075.01 | 0.814939 | 1.193333e-51 | 8.115774e-49 |
| MsG0380012524.01 | MsG0680035269.01 | 0.814899 | 1.217631e-51 | 8.272183e-49 |
| MsG0380012524.01 | MsG0780038334.01 | 0.834584 | 2.754332e-56 | 3.283061e-53 |
| MsG0380012524.01 | MsG0780038341.01 | 0.801317 | 9.532990e-49 | 4.538784e-46 |
| MsG0380012524.01 | MsG0780038784.01 | 0.818348 | 2.054610e-52 | 1.534231e-49 |
| MsG0380012524.01 | MsG0780039186.01 | 0.829641 | 4.594205e-55 | 4.730145e-52 |
| MsG0380012524.01 | MsG0880042475.01 | 0.807701 | 4.445489e-50 | 2.492985e-47 |
| MsG0280006996.01 | MsG0380012524.01 | 0.813287 | 2.762088e-51 | 1.796342e-48 |
| MsG0280009953.01 | MsG0380012524.01 | 0.801559 | 8.502986e-49 | 4.073106e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012524.01.T01 | MTR_3g026620 | 92.857 | 98 | 7 | 0 | 45 | 142 | 415 | 512 | 1.56e-60 | 196 |
| MsG0380012524.01.T01 | MTR_3g026400 | 77.551 | 98 | 22 | 0 | 45 | 142 | 383 | 480 | 4.30e-50 | 168 |
| MsG0380012524.01.T01 | MTR_3g026400 | 77.551 | 98 | 22 | 0 | 45 | 142 | 414 | 511 | 5.85e-50 | 168 |
| MsG0380012524.01.T01 | MTR_6g078450 | 46.535 | 101 | 54 | 0 | 45 | 145 | 417 | 517 | 1.88e-27 | 107 |
| MsG0380012524.01.T01 | MTR_3g033810 | 43.363 | 113 | 61 | 1 | 26 | 138 | 373 | 482 | 4.33e-27 | 106 |
| MsG0380012524.01.T01 | MTR_2g043200 | 37.107 | 159 | 67 | 3 | 4 | 140 | 372 | 519 | 7.84e-25 | 100 |
| MsG0380012524.01.T01 | MTR_6g078330 | 45.545 | 101 | 55 | 0 | 45 | 145 | 314 | 414 | 1.26e-24 | 99.0 |
| MsG0380012524.01.T01 | MTR_6g078330 | 45.545 | 101 | 55 | 0 | 45 | 145 | 314 | 414 | 1.37e-24 | 99.0 |
| MsG0380012524.01.T01 | MTR_4g066580 | 46.078 | 102 | 54 | 1 | 45 | 145 | 420 | 521 | 1.81e-24 | 99.4 |
| MsG0380012524.01.T01 | MTR_4g066340 | 41.739 | 115 | 65 | 1 | 26 | 140 | 327 | 439 | 1.95e-24 | 98.6 |
| MsG0380012524.01.T01 | MTR_6g078330 | 45.545 | 101 | 55 | 0 | 45 | 145 | 418 | 518 | 2.02e-24 | 99.4 |
| MsG0380012524.01.T01 | MTR_3g033790 | 38.938 | 113 | 66 | 1 | 26 | 138 | 370 | 479 | 2.48e-24 | 99.0 |
| MsG0380012524.01.T01 | MTR_5g071520 | 47.826 | 92 | 48 | 0 | 47 | 138 | 431 | 522 | 3.21e-24 | 98.6 |
| MsG0380012524.01.T01 | MTR_3g026280 | 53.933 | 89 | 38 | 1 | 53 | 138 | 403 | 491 | 1.97e-23 | 96.3 |
| MsG0380012524.01.T01 | MTR_4g015420 | 44.444 | 99 | 55 | 0 | 44 | 142 | 429 | 527 | 2.40e-23 | 96.3 |
| MsG0380012524.01.T01 | MTR_4g066590 | 44.000 | 100 | 56 | 0 | 45 | 144 | 414 | 513 | 4.79e-23 | 95.1 |
| MsG0380012524.01.T01 | MTR_3g028720 | 45.098 | 102 | 55 | 1 | 45 | 145 | 419 | 520 | 5.11e-23 | 95.1 |
| MsG0380012524.01.T01 | MTR_4g083000 | 47.959 | 98 | 51 | 0 | 45 | 142 | 314 | 411 | 5.55e-23 | 94.4 |
| MsG0380012524.01.T01 | MTR_4g083000 | 47.959 | 98 | 51 | 0 | 45 | 142 | 408 | 505 | 6.57e-23 | 94.7 |
| MsG0380012524.01.T01 | MTR_4g066240 | 37.903 | 124 | 55 | 1 | 37 | 138 | 387 | 510 | 9.45e-23 | 94.4 |
| MsG0380012524.01.T01 | MTR_5g044000 | 43.878 | 98 | 54 | 1 | 42 | 138 | 423 | 520 | 2.30e-22 | 93.2 |
| MsG0380012524.01.T01 | MTR_2g098520 | 43.299 | 97 | 55 | 0 | 42 | 138 | 412 | 508 | 3.73e-22 | 92.8 |
| MsG0380012524.01.T01 | MTR_2g098790 | 44.792 | 96 | 53 | 0 | 45 | 140 | 419 | 514 | 1.31e-21 | 91.3 |
| MsG0380012524.01.T01 | MTR_4g066240 | 37.600 | 125 | 55 | 2 | 37 | 138 | 387 | 511 | 4.04e-21 | 89.7 |
| MsG0380012524.01.T01 | MTR_4g023000 | 54.667 | 75 | 34 | 0 | 66 | 140 | 420 | 494 | 4.11e-21 | 89.7 |
| MsG0380012524.01.T01 | MTR_4g066630 | 43.617 | 94 | 53 | 0 | 45 | 138 | 420 | 513 | 1.41e-20 | 88.2 |
| MsG0380012524.01.T01 | MTR_0110s0030 | 52.273 | 88 | 37 | 2 | 59 | 142 | 428 | 514 | 1.51e-20 | 88.2 |
| MsG0380012524.01.T01 | MTR_0110s0040 | 52.273 | 88 | 37 | 2 | 59 | 142 | 428 | 514 | 1.69e-20 | 88.2 |
| MsG0380012524.01.T01 | MTR_6g078380 | 47.872 | 94 | 49 | 0 | 45 | 138 | 418 | 511 | 1.71e-20 | 88.2 |
| MsG0380012524.01.T01 | MTR_4g066210 | 34.921 | 126 | 60 | 1 | 37 | 140 | 394 | 519 | 1.79e-20 | 87.8 |
| MsG0380012524.01.T01 | MTR_2g098540 | 42.553 | 94 | 54 | 0 | 45 | 138 | 412 | 505 | 1.99e-20 | 87.8 |
| MsG0380012524.01.T01 | MTR_4g015460 | 41.176 | 102 | 59 | 1 | 43 | 143 | 403 | 504 | 2.60e-20 | 87.4 |
| MsG0380012524.01.T01 | MTR_2g098540 | 41.237 | 97 | 57 | 0 | 42 | 138 | 365 | 461 | 2.81e-20 | 87.4 |
| MsG0380012524.01.T01 | MTR_4g066640 | 43.299 | 97 | 55 | 0 | 42 | 138 | 415 | 511 | 2.96e-20 | 87.4 |
| MsG0380012524.01.T01 | MTR_4g081530 | 43.299 | 97 | 54 | 1 | 43 | 138 | 402 | 498 | 1.38e-19 | 85.5 |
| MsG0380012524.01.T01 | MTR_4g066330 | 41.000 | 100 | 59 | 0 | 42 | 141 | 395 | 494 | 8.29e-19 | 83.2 |
| MsG0380012524.01.T01 | MTR_4g066280 | 41.414 | 99 | 58 | 0 | 42 | 140 | 395 | 493 | 1.27e-18 | 82.8 |
| MsG0380012524.01.T01 | MTR_2g022710 | 36.170 | 141 | 78 | 4 | 13 | 142 | 372 | 511 | 2.41e-18 | 82.0 |
| MsG0380012524.01.T01 | MTR_2g022710 | 36.170 | 141 | 78 | 4 | 13 | 142 | 271 | 410 | 2.96e-18 | 81.3 |
| MsG0380012524.01.T01 | MTR_4g131810 | 34.965 | 143 | 81 | 4 | 11 | 142 | 366 | 507 | 3.79e-18 | 81.3 |
| MsG0380012524.01.T01 | MTR_4g131800 | 47.368 | 76 | 39 | 1 | 69 | 144 | 920 | 994 | 1.79e-17 | 79.3 |
| MsG0380012524.01.T01 | MTR_2g022760 | 41.837 | 98 | 56 | 1 | 47 | 144 | 419 | 515 | 2.11e-17 | 79.3 |
| MsG0380012524.01.T01 | MTR_2g022760 | 41.837 | 98 | 56 | 1 | 47 | 144 | 316 | 412 | 2.23e-17 | 79.0 |
| MsG0380012524.01.T01 | MTR_2g079550 | 41.489 | 94 | 54 | 1 | 45 | 138 | 409 | 501 | 3.67e-17 | 78.6 |
| MsG0380012524.01.T01 | MTR_2g079580 | 39.362 | 94 | 56 | 1 | 45 | 138 | 411 | 503 | 1.23e-15 | 73.9 |
| MsG0380012524.01.T01 | MTR_7g033860 | 44.595 | 74 | 41 | 0 | 65 | 138 | 438 | 511 | 5.94e-14 | 69.3 |
| MsG0380012524.01.T01 | MTR_7g051510 | 37.374 | 99 | 61 | 1 | 46 | 144 | 439 | 536 | 1.60e-13 | 67.8 |
| MsG0380012524.01.T01 | MTR_0108s0030 | 43.243 | 74 | 42 | 0 | 65 | 138 | 375 | 448 | 1.87e-13 | 67.8 |
| MsG0380012524.01.T01 | MTR_1g088630 | 39.506 | 81 | 48 | 1 | 59 | 138 | 351 | 431 | 3.70e-13 | 67.0 |
| MsG0380012524.01.T01 | MTR_1g088610 | 39.241 | 79 | 47 | 1 | 61 | 138 | 409 | 487 | 4.17e-13 | 66.6 |
| MsG0380012524.01.T01 | MTR_1g088610 | 39.241 | 79 | 47 | 1 | 61 | 138 | 534 | 612 | 5.24e-13 | 66.6 |
| MsG0380012524.01.T01 | MTR_7g068910 | 38.095 | 84 | 51 | 1 | 61 | 143 | 425 | 508 | 8.66e-13 | 65.9 |
| MsG0380012524.01.T01 | MTR_7g068910 | 38.095 | 84 | 51 | 1 | 61 | 143 | 415 | 498 | 9.57e-13 | 65.9 |
| MsG0380012524.01.T01 | MTR_7g051650 | 40.541 | 74 | 44 | 0 | 65 | 138 | 459 | 532 | 1.32e-12 | 65.5 |
| MsG0380012524.01.T01 | MTR_7g051650 | 40.541 | 74 | 44 | 0 | 65 | 138 | 455 | 528 | 1.43e-12 | 65.1 |
| MsG0380012524.01.T01 | MTR_5g068740 | 41.892 | 74 | 42 | 1 | 66 | 138 | 415 | 488 | 1.87e-12 | 64.7 |
| MsG0380012524.01.T01 | MTR_4g016920 | 34.146 | 82 | 53 | 1 | 61 | 141 | 318 | 399 | 9.98e-12 | 62.8 |
| MsG0380012524.01.T01 | MTR_4g016920 | 34.146 | 82 | 53 | 1 | 61 | 141 | 411 | 492 | 1.37e-11 | 62.4 |
| MsG0380012524.01.T01 | MTR_7g068900 | 35.714 | 84 | 53 | 1 | 61 | 143 | 340 | 423 | 1.62e-11 | 62.0 |
| MsG0380012524.01.T01 | MTR_7g056747 | 40.541 | 74 | 44 | 0 | 65 | 138 | 324 | 397 | 2.51e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012524.01.T01 | AT3G60140 | 48.454 | 97 | 49 | 1 | 45 | 140 | 408 | 504 | 3.01e-25 | 101 |
| MsG0380012524.01.T01 | AT2G44480 | 43.299 | 97 | 55 | 0 | 42 | 138 | 206 | 302 | 1.27e-24 | 97.8 |
| MsG0380012524.01.T01 | AT2G44450 | 55.128 | 78 | 35 | 0 | 65 | 142 | 276 | 353 | 5.09e-24 | 96.7 |
| MsG0380012524.01.T01 | AT2G44480 | 43.299 | 97 | 55 | 0 | 42 | 138 | 310 | 406 | 6.82e-24 | 97.1 |
| MsG0380012524.01.T01 | AT2G44480 | 43.299 | 97 | 55 | 0 | 42 | 138 | 443 | 539 | 1.25e-23 | 97.1 |
| MsG0380012524.01.T01 | AT2G44480 | 43.299 | 97 | 55 | 0 | 42 | 138 | 412 | 508 | 1.26e-23 | 97.1 |
| MsG0380012524.01.T01 | AT2G44450 | 55.128 | 78 | 35 | 0 | 65 | 142 | 427 | 504 | 1.44e-23 | 96.7 |
| MsG0380012524.01.T01 | AT5G44640 | 47.253 | 91 | 48 | 0 | 52 | 142 | 415 | 505 | 3.42e-23 | 95.9 |
| MsG0380012524.01.T01 | AT2G44470 | 57.333 | 75 | 31 | 1 | 65 | 138 | 431 | 505 | 5.45e-22 | 92.4 |
| MsG0380012524.01.T01 | AT2G25630 | 47.253 | 91 | 48 | 0 | 52 | 142 | 397 | 487 | 1.48e-21 | 90.9 |
| MsG0380012524.01.T01 | AT5G36890 | 43.617 | 94 | 53 | 0 | 45 | 138 | 386 | 479 | 3.03e-21 | 90.1 |
| MsG0380012524.01.T01 | AT5G36890 | 43.617 | 94 | 53 | 0 | 45 | 138 | 386 | 479 | 3.21e-21 | 90.1 |
| MsG0380012524.01.T01 | AT3G18070 | 46.535 | 101 | 50 | 3 | 44 | 144 | 216 | 312 | 3.32e-21 | 88.6 |
| MsG0380012524.01.T01 | AT3G18070 | 46.535 | 101 | 50 | 3 | 44 | 144 | 328 | 424 | 9.78e-21 | 88.6 |
| MsG0380012524.01.T01 | AT3G18070 | 46.078 | 102 | 51 | 3 | 43 | 144 | 398 | 495 | 1.08e-20 | 88.6 |
| MsG0380012524.01.T01 | AT5G42260 | 48.193 | 83 | 43 | 0 | 52 | 134 | 415 | 497 | 1.24e-20 | 88.6 |
| MsG0380012524.01.T01 | AT3G18070 | 46.535 | 101 | 50 | 3 | 44 | 144 | 405 | 501 | 1.29e-20 | 88.2 |
| MsG0380012524.01.T01 | AT3G60120 | 53.521 | 71 | 32 | 1 | 69 | 138 | 419 | 489 | 1.48e-20 | 88.2 |
| MsG0380012524.01.T01 | AT2G44460 | 51.351 | 74 | 35 | 1 | 66 | 138 | 431 | 504 | 1.75e-20 | 88.2 |
| MsG0380012524.01.T01 | AT5G24540 | 41.237 | 97 | 56 | 1 | 45 | 140 | 415 | 511 | 2.78e-20 | 87.4 |
| MsG0380012524.01.T01 | AT1G26560 | 54.545 | 77 | 34 | 1 | 63 | 138 | 430 | 506 | 3.60e-20 | 87.0 |
| MsG0380012524.01.T01 | AT3G60130 | 41.346 | 104 | 57 | 1 | 35 | 138 | 338 | 437 | 4.27e-20 | 86.7 |
| MsG0380012524.01.T01 | AT3G60130 | 41.346 | 104 | 57 | 1 | 35 | 138 | 349 | 448 | 4.78e-20 | 86.7 |
| MsG0380012524.01.T01 | AT5G24550 | 43.299 | 97 | 54 | 1 | 45 | 140 | 415 | 511 | 6.83e-20 | 86.3 |
| MsG0380012524.01.T01 | AT3G60130 | 41.346 | 104 | 57 | 1 | 35 | 138 | 401 | 500 | 8.41e-20 | 86.3 |
| MsG0380012524.01.T01 | AT2G44460 | 49.398 | 83 | 40 | 2 | 66 | 146 | 285 | 367 | 1.04e-19 | 85.5 |
| MsG0380012524.01.T01 | AT3G18080 | 52.222 | 90 | 37 | 3 | 59 | 144 | 425 | 512 | 3.19e-19 | 84.3 |
| MsG0380012524.01.T01 | AT1G61820 | 44.681 | 94 | 51 | 1 | 45 | 138 | 273 | 365 | 3.43e-19 | 84.0 |
| MsG0380012524.01.T01 | AT2G44490 | 47.297 | 74 | 38 | 1 | 66 | 138 | 419 | 492 | 5.30e-19 | 84.0 |
| MsG0380012524.01.T01 | AT5G54570 | 44.211 | 95 | 52 | 1 | 45 | 138 | 314 | 408 | 5.49e-19 | 83.6 |
| MsG0380012524.01.T01 | AT1G61820 | 44.681 | 94 | 51 | 1 | 45 | 138 | 412 | 504 | 5.79e-19 | 83.6 |
| MsG0380012524.01.T01 | AT5G54570 | 44.211 | 95 | 52 | 1 | 45 | 138 | 411 | 505 | 6.68e-19 | 83.6 |
| MsG0380012524.01.T01 | AT1G51470 | 44.681 | 94 | 52 | 0 | 47 | 140 | 418 | 511 | 5.26e-18 | 80.9 |
| MsG0380012524.01.T01 | AT1G47600 | 33.117 | 154 | 86 | 2 | 4 | 140 | 358 | 511 | 5.36e-18 | 80.9 |
| MsG0380012524.01.T01 | AT1G47600 | 44.681 | 94 | 52 | 0 | 47 | 140 | 417 | 510 | 5.51e-18 | 80.9 |
| MsG0380012524.01.T01 | AT2G32860 | 39.362 | 94 | 52 | 2 | 60 | 148 | 492 | 585 | 9.53e-17 | 77.4 |
| MsG0380012524.01.T01 | AT2G32860 | 39.362 | 94 | 52 | 2 | 60 | 148 | 491 | 584 | 1.00e-16 | 77.4 |
| MsG0380012524.01.T01 | AT3G21370 | 44.330 | 97 | 52 | 2 | 44 | 138 | 415 | 511 | 3.38e-16 | 75.9 |
| MsG0380012524.01.T01 | AT1G61810 | 47.945 | 73 | 37 | 1 | 66 | 138 | 336 | 407 | 4.73e-16 | 75.1 |
| MsG0380012524.01.T01 | AT1G61810 | 47.945 | 73 | 37 | 1 | 66 | 138 | 436 | 507 | 4.75e-16 | 75.5 |
| MsG0380012524.01.T01 | AT5G25980 | 51.807 | 83 | 38 | 2 | 58 | 138 | 440 | 522 | 7.44e-16 | 74.7 |
| MsG0380012524.01.T01 | AT1G52400 | 44.444 | 90 | 46 | 2 | 50 | 138 | 429 | 515 | 1.63e-15 | 73.9 |
| MsG0380012524.01.T01 | AT1G52400 | 44.444 | 90 | 46 | 2 | 50 | 138 | 429 | 515 | 1.63e-15 | 73.9 |
| MsG0380012524.01.T01 | AT1G75940 | 48.718 | 78 | 39 | 1 | 62 | 138 | 440 | 517 | 1.88e-15 | 73.6 |
| MsG0380012524.01.T01 | AT4G21760 | 39.759 | 83 | 49 | 1 | 60 | 142 | 444 | 525 | 3.66e-15 | 72.8 |
| MsG0380012524.01.T01 | AT4G21760 | 39.759 | 83 | 49 | 1 | 60 | 142 | 434 | 515 | 3.78e-15 | 72.8 |
| MsG0380012524.01.T01 | AT5G26000 | 51.282 | 78 | 36 | 2 | 63 | 138 | 434 | 511 | 7.08e-15 | 72.0 |
| MsG0380012524.01.T01 | AT1G02850 | 44.595 | 74 | 40 | 1 | 66 | 138 | 435 | 508 | 2.81e-14 | 70.1 |
| MsG0380012524.01.T01 | AT1G02850 | 44.595 | 74 | 40 | 1 | 66 | 138 | 385 | 458 | 3.42e-14 | 70.1 |
| MsG0380012524.01.T01 | AT1G02850 | 44.595 | 74 | 40 | 1 | 66 | 138 | 412 | 485 | 3.49e-14 | 70.1 |
| MsG0380012524.01.T01 | AT3G09260 | 40.625 | 96 | 56 | 1 | 44 | 138 | 415 | 510 | 8.25e-14 | 68.9 |
| MsG0380012524.01.T01 | AT5G28510 | 36.458 | 96 | 60 | 1 | 44 | 138 | 424 | 519 | 1.52e-13 | 68.2 |
| MsG0380012524.01.T01 | AT1G66280 | 36.842 | 114 | 69 | 2 | 26 | 138 | 399 | 510 | 1.95e-13 | 67.8 |
| MsG0380012524.01.T01 | AT1G66270 | 39.796 | 98 | 58 | 1 | 44 | 140 | 415 | 512 | 4.21e-13 | 66.6 |
| MsG0380012524.01.T01 | AT1G66270 | 39.796 | 98 | 58 | 1 | 44 | 140 | 413 | 510 | 4.45e-13 | 66.6 |
| MsG0380012524.01.T01 | AT1G02850 | 44.000 | 75 | 40 | 2 | 66 | 138 | 435 | 509 | 1.04e-12 | 65.5 |
| MsG0380012524.01.T01 | AT1G45191 | 38.202 | 89 | 52 | 2 | 51 | 138 | 403 | 489 | 1.33e-12 | 65.5 |
| MsG0380012524.01.T01 | AT1G45191 | 38.202 | 89 | 52 | 2 | 51 | 138 | 420 | 506 | 1.34e-12 | 65.5 |
| MsG0380012524.01.T01 | AT1G45191 | 38.202 | 89 | 52 | 2 | 51 | 138 | 408 | 494 | 1.35e-12 | 65.5 |
| MsG0380012524.01.T01 | AT1G45191 | 38.202 | 89 | 52 | 2 | 51 | 138 | 397 | 483 | 1.56e-12 | 65.1 |
| MsG0380012524.01.T01 | AT3G03640 | 45.570 | 79 | 42 | 1 | 63 | 140 | 436 | 514 | 1.57e-12 | 65.1 |
| MsG0380012524.01.T01 | AT1G61810 | 50.000 | 60 | 29 | 1 | 66 | 125 | 436 | 494 | 1.91e-12 | 65.1 |
| MsG0380012524.01.T01 | AT4G27830 | 42.667 | 75 | 42 | 1 | 65 | 138 | 322 | 396 | 2.29e-12 | 64.7 |
| MsG0380012524.01.T01 | AT4G27830 | 42.667 | 75 | 42 | 1 | 65 | 138 | 410 | 484 | 3.11e-12 | 64.3 |
| MsG0380012524.01.T01 | AT1G60090 | 34.831 | 89 | 57 | 1 | 61 | 148 | 404 | 492 | 4.34e-12 | 63.9 |
| MsG0380012524.01.T01 | AT1G60090 | 34.831 | 89 | 57 | 1 | 61 | 148 | 411 | 499 | 4.93e-12 | 63.5 |
| MsG0380012524.01.T01 | AT4G27820 | 41.333 | 75 | 43 | 1 | 65 | 138 | 323 | 397 | 1.02e-11 | 62.8 |
| MsG0380012524.01.T01 | AT4G27820 | 41.333 | 75 | 43 | 1 | 65 | 138 | 323 | 397 | 1.02e-11 | 62.8 |
| MsG0380012524.01.T01 | AT4G27820 | 41.333 | 75 | 43 | 1 | 65 | 138 | 408 | 482 | 1.50e-11 | 62.4 |
| MsG0380012524.01.T01 | AT3G62750 | 40.000 | 75 | 44 | 1 | 65 | 138 | 314 | 388 | 7.61e-11 | 60.1 |
| MsG0380012524.01.T01 | AT3G62750 | 40.000 | 75 | 44 | 1 | 65 | 138 | 314 | 388 | 7.61e-11 | 60.1 |
| MsG0380012524.01.T01 | AT4G22100 | 37.500 | 80 | 49 | 1 | 60 | 138 | 403 | 482 | 8.15e-11 | 60.1 |
Find 28 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCTTAAGCTTTATTTAAT+TGG | 0.134073 | 3:+19158807 | None:intergenic |
| TTCATATGTATTGAGATAAT+TGG | 0.297420 | 3:-19158835 | MsG0380012524.01.T01:exon |
| TTATCCTAATACCATCTTTA+CGG | 0.298972 | 3:+19159720 | None:intergenic |
| GCCTAAATCGTGTCACTATA+AGG | 0.315991 | 3:-19160163 | MsG0380012524.01.T01:CDS |
| GCCTTATAGTGACACGATTT+AGG | 0.335324 | 3:+19160162 | None:intergenic |
| TACCAATTAAATAAAGCTTA+AGG | 0.360905 | 3:-19158809 | MsG0380012524.01.T01:three_prime_UTR |
| TAGCCCGTAAAGATGGTATT+AGG | 0.367113 | 3:-19159724 | MsG0380012524.01.T01:CDS |
| GCCGGCTACACAATACGATT+TGG | 0.390006 | 3:-19159032 | MsG0380012524.01.T01:CDS |
| TATCCTAATACCATCTTTAC+GGG | 0.394120 | 3:+19159721 | None:intergenic |
| ACCAATTAAATAAAGCTTAA+GGG | 0.410923 | 3:-19158808 | MsG0380012524.01.T01:three_prime_UTR |
| TCTTTACGGGCTACGTTGAC+TGG | 0.425906 | 3:+19159734 | None:intergenic |
| GTTCATACTTTATTGCTTGA+AGG | 0.425908 | 3:+19159669 | None:intergenic |
| TTTCAGGTGTTGGTCAATCA+AGG | 0.463308 | 3:-19159769 | MsG0380012524.01.T01:intron |
| ACGATTTGGAATCATTTATG+TGG | 0.466735 | 3:-19159018 | MsG0380012524.01.T01:CDS |
| TCCAAATCGTATTGTGTAGC+CGG | 0.485157 | 3:+19159031 | None:intergenic |
| GGAACTTGAGATGGCTATCA+TGG | 0.495983 | 3:+19159693 | None:intergenic |
| TGAATGCAAGTAACATACTA+AGG | 0.504746 | 3:+19158854 | None:intergenic |
| GTCAACGTAGCCCGTAAAGA+TGG | 0.512028 | 3:-19159731 | MsG0380012524.01.T01:CDS |
| CAAAATGCAGATGTAGCTAC+TGG | 0.523525 | 3:+19160065 | None:intergenic |
| CTTGAAGGAGGAACTTGAGA+TGG | 0.528721 | 3:+19159684 | None:intergenic |
| GACAGCTATGAATGGGATGC+CGG | 0.535285 | 3:-19159050 | MsG0380012524.01.T01:CDS |
| ATGTGAAAGGCTACTATGCT+TGG | 0.544074 | 3:-19159082 | MsG0380012524.01.T01:CDS |
| GTAACATACTAAGGTGACAT+TGG | 0.547315 | 3:+19158863 | None:intergenic |
| CATACTTTATTGCTTGAAGG+AGG | 0.562943 | 3:+19159672 | None:intergenic |
| GGCATCCCATTCATAGCTGT+CGG | 0.587549 | 3:+19159052 | None:intergenic |
| GGTAGAAAATTGTGGCGCAA+TGG | 0.588110 | 3:+19160086 | None:intergenic |
| TAGCTACTGGTAGAAAATTG+TGG | 0.608468 | 3:+19160078 | None:intergenic |
| AGAGATGGTGCAAATGTGAA+AGG | 0.652541 | 3:-19159095 | MsG0380012524.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAGTTTATAATATTT+CGG | + | Chr3:19159455-19159474 | None:intergenic | 10.0% |
| !! | AATATAGTGAAATAGAATTA+GGG | + | Chr3:19159362-19159381 | None:intergenic | 15.0% |
| !! | ATATTAATCAATTAACTCTT+AGG | - | Chr3:19158973-19158992 | MsG0380012524.01.T01:CDS | 15.0% |
| !! | TAATATAGTGAAATAGAATT+AGG | + | Chr3:19159363-19159382 | None:intergenic | 15.0% |
| !!! | TATAAACTCATTTTTTTTGT+TGG | - | Chr3:19159461-19159480 | MsG0380012524.01.T01:intron | 15.0% |
| !!! | TCATTAAGATTTTTTTTTTG+AGG | + | Chr3:19159429-19159448 | None:intergenic | 15.0% |
| !! | ACCAATTAAATAAAGCTTAA+GGG | - | Chr3:19160133-19160152 | MsG0380012524.01.T01:CDS | 20.0% |
| !! | GAATTAATCTCATAATTAAC+AGG | + | Chr3:19159624-19159643 | None:intergenic | 20.0% |
| !! | GTTTATATAAAGAGGTTAAA+GGG | + | Chr3:19159762-19159781 | None:intergenic | 20.0% |
| !! | TACCAATTAAATAAAGCTTA+AGG | - | Chr3:19160132-19160151 | MsG0380012524.01.T01:CDS | 20.0% |
| !! | TGTTTATATAAAGAGGTTAA+AGG | + | Chr3:19159763-19159782 | None:intergenic | 20.0% |
| !! | TTCATATGTATTGAGATAAT+TGG | - | Chr3:19160106-19160125 | MsG0380012524.01.T01:CDS | 20.0% |
| !! | TTTATATAAAGAGGTTAAAG+GGG | + | Chr3:19159761-19159780 | None:intergenic | 20.0% |
| !!! | AATTGATTATGGTAACTTTT+TGG | - | Chr3:19159810-19159829 | MsG0380012524.01.T01:intron | 20.0% |
| !!! | AGGTTTTTTTTAATGATTGT+TGG | - | Chr3:19159670-19159689 | MsG0380012524.01.T01:intron | 20.0% |
| !!! | CTGTTTTTGTTTATATAAAG+AGG | + | Chr3:19159770-19159789 | None:intergenic | 20.0% |
| ! | ACCATAATCAATTCTTTATG+AGG | + | Chr3:19159803-19159822 | None:intergenic | 25.0% |
| ! | ACCTCATAAAGAATTGATTA+TGG | - | Chr3:19159799-19159818 | MsG0380012524.01.T01:intron | 25.0% |
| ! | CAATTAACTCTTAGGAAAAT+AGG | - | Chr3:19158981-19159000 | MsG0380012524.01.T01:CDS | 25.0% |
| ! | TTATCCTAATACCATCTTTA+CGG | + | Chr3:19159224-19159243 | None:intergenic | 25.0% |
| ! | TTTAAAGAGTCTAATCTACA+AGG | + | Chr3:19159601-19159620 | None:intergenic | 25.0% |
| !! | AAAAATCATAGCACGATTTT+GGG | + | Chr3:19158834-19158853 | None:intergenic | 25.0% |
| !! | CAATTCTTTATGAGGTATTT+AGG | + | Chr3:19159795-19159814 | None:intergenic | 25.0% |
| !! | TAAAAATCATAGCACGATTT+TGG | + | Chr3:19158835-19158854 | None:intergenic | 25.0% |
| !! | TTTAGAGTCTTTACTTTCAA+AGG | + | Chr3:19159700-19159719 | None:intergenic | 25.0% |
| !!! | AGATTTTCCTATGTTGTTTT+TGG | - | Chr3:19160050-19160069 | MsG0380012524.01.T01:intron | 25.0% |
| !!! | GAGTCAAATTTTTGAAGTTT+GGG | + | Chr3:19158931-19158950 | None:intergenic | 25.0% |
| !!! | GTTAGCTAGATGTATTTTTA+TGG | + | Chr3:19159079-19159098 | None:intergenic | 25.0% |
| !!! | TGAGTCAAATTTTTGAAGTT+TGG | + | Chr3:19158932-19158951 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTGAATATGTTTC+AGG | - | Chr3:19159156-19159175 | MsG0380012524.01.T01:intron | 25.0% |
| ATTAGGGAAACTGTAAATCT+AGG | + | Chr3:19159346-19159365 | None:intergenic | 30.0% | |
| GGAAATTCCAAAAACAACAT+AGG | + | Chr3:19160060-19160079 | None:intergenic | 30.0% | |
| GTTCATACTTTATTGCTTGA+AGG | + | Chr3:19159275-19159294 | None:intergenic | 30.0% | |
| TATCCTAATACCATCTTTAC+GGG | + | Chr3:19159223-19159242 | None:intergenic | 30.0% | |
| TGAATGCAAGTAACATACTA+AGG | + | Chr3:19160090-19160109 | None:intergenic | 30.0% | |
| TTAGGGAAACTGTAAATCTA+GGG | + | Chr3:19159345-19159364 | None:intergenic | 30.0% | |
| ! | ACGATTTGGAATCATTTATG+TGG | - | Chr3:19159923-19159942 | MsG0380012524.01.T01:intron | 30.0% |
| !! | ATTTGAGTTTTCTCTTGAGA+AGG | + | Chr3:19160007-19160026 | None:intergenic | 30.0% |
| !! | GCCCTTAAGCTTTATTTAAT+TGG | + | Chr3:19160137-19160156 | None:intergenic | 30.0% |
| ATCGAACTCGCATATTTCAT+AGG | - | Chr3:19159721-19159740 | MsG0380012524.01.T01:CDS | 35.0% | |
| ATTAATTCTCGATCTCGAGT+AGG | - | Chr3:19159636-19159655 | MsG0380012524.01.T01:intron | 35.0% | |
| CATACTTTATTGCTTGAAGG+AGG | + | Chr3:19159272-19159291 | None:intergenic | 35.0% | |
| CTAGGTAGTGTTAAGAACTA+TGG | + | Chr3:19159043-19159062 | None:intergenic | 35.0% | |
| GTAACATACTAAGGTGACAT+TGG | + | Chr3:19160081-19160100 | None:intergenic | 35.0% | |
| TAGCTACTGGTAGAAAATTG+TGG | + | Chr3:19158866-19158885 | None:intergenic | 35.0% | |
| TCGAACTCGCATATTTCATA+GGG | - | Chr3:19159722-19159741 | MsG0380012524.01.T01:CDS | 35.0% | |
| ! | ATTTTCCGACAGCTATGAAT+GGG | - | Chr3:19159884-19159903 | MsG0380012524.01.T01:intron | 35.0% |
| ! | TGTGAATATGTTTCAGGTGT+TGG | - | Chr3:19159162-19159181 | MsG0380012524.01.T01:intron | 35.0% |
| ACACTACCTAGCTAAATGTC+TGG | - | Chr3:19159052-19159071 | MsG0380012524.01.T01:CDS | 40.0% | |
| AGAGATGGTGCAAATGTGAA+AGG | - | Chr3:19159846-19159865 | MsG0380012524.01.T01:intron | 40.0% | |
| ATATCTTGTCGAACATGCTC+GGG | + | Chr3:19159578-19159597 | None:intergenic | 40.0% | |
| ATGTGAAAGGCTACTATGCT+TGG | - | Chr3:19159859-19159878 | MsG0380012524.01.T01:intron | 40.0% | |
| CAAAATGCAGATGTAGCTAC+TGG | + | Chr3:19158879-19158898 | None:intergenic | 40.0% | |
| CGAACTCGCATATTTCATAG+GGG | - | Chr3:19159723-19159742 | MsG0380012524.01.T01:CDS | 40.0% | |
| GATATCTTGTCGAACATGCT+CGG | + | Chr3:19159579-19159598 | None:intergenic | 40.0% | |
| GCCTTATAGTGACACGATTT+AGG | + | Chr3:19158782-19158801 | None:intergenic | 40.0% | |
| TAGCCCGTAAAGATGGTATT+AGG | - | Chr3:19159217-19159236 | MsG0380012524.01.T01:intron | 40.0% | |
| TATGGTCCAGACATTTAGCT+AGG | + | Chr3:19159061-19159080 | None:intergenic | 40.0% | |
| TCCAAATCGTATTGTGTAGC+CGG | + | Chr3:19159913-19159932 | None:intergenic | 40.0% | |
| TCGAGTAGGCAGCAAAATTT+AGG | - | Chr3:19159650-19159669 | MsG0380012524.01.T01:intron | 40.0% | |
| TGTTCGACTAAGAAGTCACT+TGG | - | Chr3:19159504-19159523 | MsG0380012524.01.T01:intron | 40.0% | |
| ! | ACAATCGAGGCACGATTTTT+AGG | + | Chr3:19158902-19158921 | None:intergenic | 40.0% |
| ! | AGCCAAAAAGCAGAGTACTT+GGG | + | Chr3:19159975-19159994 | None:intergenic | 40.0% |
| ! | CATTTTCCGACAGCTATGAA+TGG | - | Chr3:19159883-19159902 | MsG0380012524.01.T01:intron | 40.0% |
| ! | GCCTAAATCGTGTCACTATA+AGG | - | Chr3:19158778-19158797 | MsG0380012524.01.T01:three_prime_UTR | 40.0% |
| !! | ATCCCAAGTACTCTGCTTTT+TGG | - | Chr3:19159970-19159989 | MsG0380012524.01.T01:intron | 40.0% |
| !! | TTTCAGGTGTTGGTCAATCA+AGG | - | Chr3:19159172-19159191 | MsG0380012524.01.T01:intron | 40.0% |
| !!! | CATAGCACGATTTTGGGATA+TGG | + | Chr3:19158828-19158847 | None:intergenic | 40.0% |
| CTTGAAGGAGGAACTTGAGA+TGG | + | Chr3:19159260-19159279 | None:intergenic | 45.0% | |
| GCACCATCTCTGCAAGAAAA+AGG | + | Chr3:19159837-19159856 | None:intergenic | 45.0% | |
| GGAACTTGAGATGGCTATCA+TGG | + | Chr3:19159251-19159270 | None:intergenic | 45.0% | |
| GGTAGAAAATTGTGGCGCAA+TGG | + | Chr3:19158858-19158877 | None:intergenic | 45.0% | |
| GTTTGGGAAGTTGACAATCG+AGG | + | Chr3:19158915-19158934 | None:intergenic | 45.0% | |
| ! | CAGCCAAAAAGCAGAGTACT+TGG | + | Chr3:19159976-19159995 | None:intergenic | 45.0% |
| ! | GGTCCTTTTTCTTGCAGAGA+TGG | - | Chr3:19159831-19159850 | MsG0380012524.01.T01:intron | 45.0% |
| CTCTTCAACCTCGAGATACC+TGG | - | Chr3:19159539-19159558 | MsG0380012524.01.T01:intron | 50.0% | |
| GACAGCTATGAATGGGATGC+CGG | - | Chr3:19159891-19159910 | MsG0380012524.01.T01:intron | 50.0% | |
| GACTCAAACCAGGTATCTCG+AGG | + | Chr3:19159550-19159569 | None:intergenic | 50.0% | |
| GCCGGCTACACAATACGATT+TGG | - | Chr3:19159909-19159928 | MsG0380012524.01.T01:intron | 50.0% | |
| GGCATCCCATTCATAGCTGT+CGG | + | Chr3:19159892-19159911 | None:intergenic | 50.0% | |
| GTCAACGTAGCCCGTAAAGA+TGG | - | Chr3:19159210-19159229 | MsG0380012524.01.T01:intron | 50.0% | |
| ! | TCTTTACGGGCTACGTTGAC+TGG | + | Chr3:19159210-19159229 | None:intergenic | 50.0% |
| TTGTCGAACATGCTCGGGTG+CGG | + | Chr3:19159573-19159592 | None:intergenic | 55.0% | |
| TGTCGAACATGCTCGGGTGC+GGG | + | Chr3:19159572-19159591 | None:intergenic | 60.0% | |
| TCGGGTGCGGGACTCAAACC+AGG | + | Chr3:19159560-19159579 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 19158764 | 19160199 | 19158764 | ID=MsG0380012524.01;Name=MsG0380012524.01 |
| Chr3 | mRNA | 19158764 | 19160199 | 19158764 | ID=MsG0380012524.01.T01;Parent=MsG0380012524.01;Name=MsG0380012524.01.T01;_AED=0.61;_eAED=0.61;_QI=0|0.5|0.66|0.66|1|1|3|75|176 |
| Chr3 | exon | 19160055 | 19160199 | 19160055 | ID=MsG0380012524.01.T01:exon:3997;Parent=MsG0380012524.01.T01 |
| Chr3 | exon | 19159677 | 19159785 | 19159677 | ID=MsG0380012524.01.T01:exon:3998;Parent=MsG0380012524.01.T01 |
| Chr3 | exon | 19158764 | 19159115 | 19158764 | ID=MsG0380012524.01.T01:exon:3999;Parent=MsG0380012524.01.T01 |
| Chr3 | CDS | 19160055 | 19160199 | 19160055 | ID=MsG0380012524.01.T01:cds;Parent=MsG0380012524.01.T01 |
| Chr3 | CDS | 19159677 | 19159785 | 19159677 | ID=MsG0380012524.01.T01:cds;Parent=MsG0380012524.01.T01 |
| Chr3 | CDS | 19158839 | 19159115 | 19158839 | ID=MsG0380012524.01.T01:cds;Parent=MsG0380012524.01.T01 |
| Chr3 | three_prime_UTR | 19158764 | 19158838 | 19158764 | ID=MsG0380012524.01.T01:three_prime_utr;Parent=MsG0380012524.01.T01 |
| Gene Sequence |
| Protein sequence |
