AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025256.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025256.01.T01 MTR_5g025230 59.514 247 12 4 1 159 155 401 4.04e-86 266
MsG0580025256.01.T01 MTR_5g025230 50.943 159 59 3 90 232 423 578 9.76e-37 135
MsG0580025256.01.T01 MTR_5g025250 54.839 248 24 4 1 160 156 403 6.91e-80 250
MsG0580025256.01.T01 MTR_5g025250 67.925 106 27 1 134 232 474 579 1.95e-37 137
MsG0580025256.01.T01 MTR_5g025270 54.582 251 26 4 1 163 157 407 7.76e-79 247
MsG0580025256.01.T01 MTR_5g025270 94.286 70 4 0 163 232 512 581 4.89e-37 136
MsG0580025256.01.T01 MTR_2g070460 24.701 251 100 5 1 163 188 437 1.02e-17 82.0
MsG0580025256.01.T01 MTR_2g070460 43.939 66 35 1 163 228 545 608 5.00e-13 68.2
MsG0580025256.01.T01 MTR_8g037315 53.125 64 29 1 163 226 472 534 1.07e-12 67.0
MsG0580025256.01.T01 MTR_8g037310 50.000 64 31 1 163 226 507 569 1.51e-11 63.9
MsG0580025256.01.T01 MTR_3g110195 42.188 64 37 0 158 221 515 578 3.24e-11 62.8
MsG0580025256.01.T01 MTR_8g037290 50.000 64 31 1 163 226 507 569 5.18e-11 62.4
MsG0580025256.01.T01 MTR_8g037275 48.438 64 32 1 163 226 507 569 9.60e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025256.01.T01 AT4G19170 43.701 254 52 5 1 163 165 418 2.68e-57 191
MsG0580025256.01.T01 AT4G19170 75.758 66 16 0 164 229 530 595 5.05e-27 108
MsG0580025256.01.T01 AT1G30100 30.769 195 79 5 1 139 166 360 4.05e-20 89.0
MsG0580025256.01.T01 AT1G30100 50.000 60 28 1 167 226 528 585 1.76e-11 63.5
MsG0580025256.01.T01 AT3G14440 27.551 196 86 4 1 140 176 371 5.81e-20 88.6
MsG0580025256.01.T01 AT4G18350 31.551 187 72 5 1 131 159 345 1.58e-19 87.4
MsG0580025256.01.T01 AT3G63520 27.459 244 91 5 1 158 102 345 8.38e-19 85.1
MsG0580025256.01.T01 AT3G63520 52.174 69 32 1 163 231 470 537 8.59e-14 70.5
MsG0580025256.01.T01 AT1G78390 29.082 196 83 4 1 140 236 431 1.80e-18 84.3
MsG0580025256.01.T01 AT3G24220 51.562 64 28 2 163 226 512 572 5.74e-12 65.1

Find 55 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCATAACGGCCCATTGTT+TGG 0.305791 5:+16031242 None:intergenic
CCTGTGTCGCTGTCTACTTT+AGG 0.344114 5:+16031184 None:intergenic
TGAATCCTCTTGACATGTTT+CGG 0.351342 5:-16030986 MsG0580025256.01.T01:CDS
GGAGTTAGTTTGACTTCATA+AGG 0.379285 5:+16031277 None:intergenic
ATTGTTTGGATGTCACCATT+TGG 0.384230 5:+16031256 None:intergenic
TTGAAACCAGAAAACACGTT+TGG 0.405859 5:+16031447 None:intergenic
GACATGTTTCGGTGGTTCTC+CGG 0.447275 5:-16030975 MsG0580025256.01.T01:intron
AAACCAAACGGCACCCTCCT+TGG 0.447531 5:+16030357 None:intergenic
TGAAACCAGAAAACACGTTT+GGG 0.456713 5:+16031448 None:intergenic
GCTGTAGCACGGGTGTTAAC+CGG 0.463041 5:-16031390 MsG0580025256.01.T01:intron
GAAGTCAAACTAACTCCAAA+TGG 0.481778 5:-16031271 MsG0580025256.01.T01:CDS
TTATGTGCATGATGAGAAGA+AGG 0.484903 5:-16030448 MsG0580025256.01.T01:CDS
TCCCTACGACACCGACAACT+TGG 0.487147 5:+16030302 None:intergenic
TTGCCAAGGAGGGTGCCGTT+TGG 0.488338 5:-16030360 MsG0580025256.01.T01:CDS
AACGCATGGGATGAGGAAGA+TGG 0.489469 5:-16030839 MsG0580025256.01.T01:CDS
GTCGCCGGAGTTTGAGATTG+TGG 0.494521 5:-16030394 MsG0580025256.01.T01:CDS
TGCGATAAACGCATGGGATG+AGG 0.502101 5:-16030846 MsG0580025256.01.T01:CDS
TACAAAATCGAAAACGAAGC+TGG 0.502603 5:-16031483 MsG0580025256.01.T01:CDS
CATGCCGTTACAATCTCAAA+CGG 0.508376 5:-16031546 MsG0580025256.01.T01:CDS
AATGGTGACATCCAAACAAT+GGG 0.514207 5:-16031253 MsG0580025256.01.T01:CDS
GGAGTTTGAGATTGTGGCGG+AGG 0.515266 5:-16030388 MsG0580025256.01.T01:CDS
AAAACACGTTTGGGATAAGT+TGG 0.520569 5:+16031457 None:intergenic
CACCAAGTTGTCGGTGTCGT+AGG 0.521647 5:-16030304 None:intergenic
GAGGGAGGATGGTGAAGAAG+AGG 0.527711 5:-16030490 MsG0580025256.01.T01:CDS
ACCAAGTTGTCGGTGTCGTA+GGG 0.528287 5:-16030303 None:intergenic
CTTATTGCTTTAGCGACACG+TGG 0.532433 5:-16031420 MsG0580025256.01.T01:CDS
ACGCATGGGATGAGGAAGAT+GGG 0.532434 5:-16030838 MsG0580025256.01.T01:CDS
AACAATCCATGAAAACCAAA+CGG 0.535995 5:+16030345 None:intergenic
GGTGATGGATGCGAAGTCGC+CGG 0.538159 5:-16030409 MsG0580025256.01.T01:CDS
ATGCCGTTACAATCTCAAAC+GGG 0.558445 5:-16031545 MsG0580025256.01.T01:CDS
TACATAACGGCTACATAGTG+TGG 0.565392 5:+16031518 None:intergenic
GAGTGACATCACCAAGTTGT+CGG 0.571610 5:-16030313 MsG0580025256.01.T01:CDS
GTTTGCCGTTAAAATCATAA+CGG 0.574687 5:+16031230 None:intergenic
TCCGCCACAATCTCAAACTC+CGG 0.575111 5:+16030390 None:intergenic
TATGTGCATGATGAGAAGAA+GGG 0.578787 5:-16030447 MsG0580025256.01.T01:CDS
AAATGGTGACATCCAAACAA+TGG 0.580859 5:-16031254 MsG0580025256.01.T01:CDS
GATGGTGAAGAAGAGGATGA+TGG 0.592671 5:-16030483 MsG0580025256.01.T01:CDS
CGGAGGTGAAGTTGCCAAGG+AGG 0.593842 5:-16030371 MsG0580025256.01.T01:CDS
TGGATCCGTAGCTGTAGCAC+GGG 0.598920 5:-16031400 MsG0580025256.01.T01:CDS
GGAGGTGAAGTTGCCAAGGA+GGG 0.600925 5:-16030370 MsG0580025256.01.T01:CDS
CCTAAAGTAGACAGCGACAC+AGG 0.601523 5:-16031184 MsG0580025256.01.T01:intron
CGCATGGGATGAGGAAGATG+GGG 0.603766 5:-16030837 MsG0580025256.01.T01:CDS
TTTCCCGTTTGAGATTGTAA+CGG 0.604158 5:+16031542 None:intergenic
ATCCTCTTGACATGTTTCGG+TGG 0.605207 5:-16030983 MsG0580025256.01.T01:CDS
ATGAGAAGAAGGGAGAGTCA+AGG 0.607088 5:-16030437 MsG0580025256.01.T01:CDS
GTGGATCCGTAGCTGTAGCA+CGG 0.609159 5:-16031401 MsG0580025256.01.T01:CDS
TAACACCCGTGCTACAGCTA+CGG 0.610630 5:+16031395 None:intergenic
TGGCGGAGGTGAAGTTGCCA+AGG 0.613374 5:-16030374 MsG0580025256.01.T01:CDS
TTTGCATGCGATAAACGCAT+GGG 0.618674 5:-16030852 MsG0580025256.01.T01:CDS
AACCACCGAAACATGTCAAG+AGG 0.630595 5:+16030981 None:intergenic
ATGGGATGAGGAAGATGGGG+AGG 0.643327 5:-16030834 MsG0580025256.01.T01:CDS
CAAACTCTTGATGAGTATGA+CGG 0.644429 5:-16031212 MsG0580025256.01.T01:CDS
GCCGGAGTTTGAGATTGTGG+CGG 0.652926 5:-16030391 MsG0580025256.01.T01:CDS
GCGAAATCGTGAAGAAACGA+AGG 0.664061 5:+16031053 None:intergenic
ATGGGGAGGAAACAGTACCC+TGG 0.699094 5:-16030820 MsG0580025256.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAACGGAAATAGGTTAAAA+AGG + Chr5:16030733-16030752 None:intergenic 25.0%
!! ACTTGTAGGTTTTTACATAA+CGG + Chr5:16030355-16030374 None:intergenic 25.0%
!! AGTGATTAACATGATTTTTG+GGG - Chr5:16031199-16031218 MsG0580025256.01.T01:CDS 25.0%
!! CAGTGATTAACATGATTTTT+GGG - Chr5:16031198-16031217 MsG0580025256.01.T01:CDS 25.0%
AACAATCCATGAAAACCAAA+CGG + Chr5:16031515-16031534 None:intergenic 30.0%
ATTCGAATCAAAACGGAAAT+AGG + Chr5:16030742-16030761 None:intergenic 30.0%
GTTTGCCGTTAAAATCATAA+CGG + Chr5:16030630-16030649 None:intergenic 30.0%
TAACACCATTCGAATCAAAA+CGG + Chr5:16030749-16030768 None:intergenic 30.0%
! GAAGAATAGGTTTGTTTATG+CGG - Chr5:16031224-16031243 MsG0580025256.01.T01:CDS 30.0%
! GCAGTGATTAACATGATTTT+TGG - Chr5:16031197-16031216 MsG0580025256.01.T01:CDS 30.0%
! GTTTTCGATTTTGTACTTGT+AGG + Chr5:16030369-16030388 None:intergenic 30.0%
!! TTTTCATGGATTGTTTGTGA+AGG - Chr5:16031520-16031539 MsG0580025256.01.T01:CDS 30.0%
!!! CACAGCGTATTTTTTAGTAA+TGG + Chr5:16030829-16030848 None:intergenic 30.0%
!!! TATTTCCGTTTTGATTCGAA+TGG - Chr5:16030741-16030760 MsG0580025256.01.T01:intron 30.0%
AAATGGTGACATCCAAACAA+TGG - Chr5:16030603-16030622 MsG0580025256.01.T01:intron 35.0%
AATCCTCACTTTCTCAATCA+TGG + Chr5:16031120-16031139 None:intergenic 35.0%
AATGGTGACATCCAAACAAT+GGG - Chr5:16030604-16030623 MsG0580025256.01.T01:intron 35.0%
AGTAACAAGACAACCGTTAT+CGG - Chr5:16031157-16031176 MsG0580025256.01.T01:intron 35.0%
AGTGAGGATTAACGTTGAAA+CGG - Chr5:16031130-16031149 MsG0580025256.01.T01:intron 35.0%
ATTGTTTGGATGTCACCATT+TGG + Chr5:16030604-16030623 None:intergenic 35.0%
CAAACTCTTGATGAGTATGA+CGG - Chr5:16030645-16030664 MsG0580025256.01.T01:intron 35.0%
CCATCAAAAGTTTCAAGGAT+CGG - Chr5:16030916-16030935 MsG0580025256.01.T01:intron 35.0%
GAAATTGGATGTAGGTTGTA+TGG - Chr5:16031309-16031328 MsG0580025256.01.T01:intron 35.0%
GAAGTCAAACTAACTCCAAA+TGG - Chr5:16030586-16030605 MsG0580025256.01.T01:intron 35.0%
GATTCTCCTAAAGCAAAAGA+CGG + Chr5:16030553-16030572 None:intergenic 35.0%
GCATGCAAAATATTAAACCC+TGG + Chr5:16030994-16031013 None:intergenic 35.0%
TACAAAATCGAAAACGAAGC+TGG - Chr5:16030374-16030393 MsG0580025256.01.T01:CDS 35.0%
TATGTGCATGATGAGAAGAA+GGG - Chr5:16031410-16031429 MsG0580025256.01.T01:CDS 35.0%
TGAAACCAGAAAACACGTTT+GGG + Chr5:16030412-16030431 None:intergenic 35.0%
TGAATCCTCTTGACATGTTT+CGG - Chr5:16030871-16030890 MsG0580025256.01.T01:intron 35.0%
TGCTCCACTGACAAAATATT+CGG + Chr5:16031068-16031087 None:intergenic 35.0%
TTATGTGCATGATGAGAAGA+AGG - Chr5:16031409-16031428 MsG0580025256.01.T01:CDS 35.0%
TTGAAACCAGAAAACACGTT+TGG + Chr5:16030413-16030432 None:intergenic 35.0%
! AAAACACGTTTGGGATAAGT+TGG + Chr5:16030403-16030422 None:intergenic 35.0%
! AAGAAACGAAGGTCTTTTCA+TGG + Chr5:16030796-16030815 None:intergenic 35.0%
! ATGGGCCGTTATGATTTTAA+CGG - Chr5:16030622-16030641 MsG0580025256.01.T01:intron 35.0%
! GGAGTTAGTTTGACTTCATA+AGG + Chr5:16030583-16030602 None:intergenic 35.0%
! TGAAGATAGACGTGTTGATA+GGG - Chr5:16031283-16031302 MsG0580025256.01.T01:CDS 35.0%
! TTTCCCGTTTGAGATTGTAA+CGG + Chr5:16030318-16030337 None:intergenic 35.0%
!! GATTTTTGGGGAAGAAGAAT+AGG - Chr5:16031211-16031230 MsG0580025256.01.T01:CDS 35.0%
AAGGTCGATTGTGACCATAA+CGG + Chr5:16030714-16030733 None:intergenic 40.0%
AATCATAACGGCCCATTGTT+TGG + Chr5:16030618-16030637 None:intergenic 40.0%
AATCCAATGCCGAAGATTTC+TGG - Chr5:16031255-16031274 MsG0580025256.01.T01:CDS 40.0%
ACAAAATATTCGGTCCTACC+AGG + Chr5:16031058-16031077 None:intergenic 40.0%
ATCCAATGCCGAAGATTTCT+GGG - Chr5:16031256-16031275 MsG0580025256.01.T01:CDS 40.0%
ATCGGTGAGGAATCTTGATT+GGG - Chr5:16031175-16031194 MsG0580025256.01.T01:intron 40.0%
ATGAAGTGGTTTGATGTTCC+AGG - Chr5:16030973-16030992 MsG0580025256.01.T01:intron 40.0%
ATGACGAGTCAAAGATGAAG+TGG - Chr5:16030959-16030978 MsG0580025256.01.T01:intron 40.0%
ATGCCATGATTGAGAAAGTG+AGG - Chr5:16031114-16031133 MsG0580025256.01.T01:intron 40.0%
ATGCCGTTACAATCTCAAAC+GGG - Chr5:16030312-16030331 MsG0580025256.01.T01:CDS 40.0%
CAAAATATTCGGTCCTACCA+GGG + Chr5:16031057-16031076 None:intergenic 40.0%
CATGCCGTTACAATCTCAAA+CGG - Chr5:16030311-16030330 MsG0580025256.01.T01:CDS 40.0%
CGGATCCATCAAAAGTTTCA+AGG - Chr5:16030911-16030930 MsG0580025256.01.T01:intron 40.0%
GAATGTTTCGCTTTCCGTTA+TGG - Chr5:16030697-16030716 MsG0580025256.01.T01:intron 40.0%
GGTCAGTATAACCCATCTAA+CGG - Chr5:16030488-16030507 MsG0580025256.01.T01:CDS 40.0%
GTGAGGATTAACGTTGAAAC+GGG - Chr5:16031131-16031150 MsG0580025256.01.T01:intron 40.0%
TACATAACGGCTACATAGTG+TGG + Chr5:16030342-16030361 None:intergenic 40.0%
TATAACCCATCTAACGGCAT+TGG - Chr5:16030494-16030513 MsG0580025256.01.T01:intron 40.0%
TATCGGTGAGGAATCTTGAT+TGG - Chr5:16031174-16031193 MsG0580025256.01.T01:intron 40.0%
TCAAGATTCCTCACCGATAA+CGG + Chr5:16031173-16031192 None:intergenic 40.0%
TCTCAATCATGGCATGAACA+AGG + Chr5:16031109-16031128 None:intergenic 40.0%
TGAAGTGGTTTGATGTTCCA+GGG - Chr5:16030974-16030993 MsG0580025256.01.T01:intron 40.0%
TGAGGATTAACGTTGAAACG+GGG - Chr5:16031132-16031151 MsG0580025256.01.T01:intron 40.0%
TTTGCATGCGATAAACGCAT+GGG - Chr5:16031005-16031024 MsG0580025256.01.T01:CDS 40.0%
! AGGACCGAATATTTTGTCAG+TGG - Chr5:16031061-16031080 MsG0580025256.01.T01:CDS 40.0%
! AGGTTTGTTTATGCGGCAAT+TGG - Chr5:16031231-16031250 MsG0580025256.01.T01:CDS 40.0%
! CCGATCCTTGAAACTTTTGA+TGG + Chr5:16030919-16030938 None:intergenic 40.0%
! CTTATCCCAAACGTGTTTTC+TGG - Chr5:16030404-16030423 MsG0580025256.01.T01:CDS 40.0%
! GAAGATAGACGTGTTGATAG+GGG - Chr5:16031284-16031303 MsG0580025256.01.T01:CDS 40.0%
! GGTCTTTTCATGGACAATAC+TGG + Chr5:16030786-16030805 None:intergenic 40.0%
! GGTTTGTTTATGCGGCAATT+GGG - Chr5:16031232-16031251 MsG0580025256.01.T01:CDS 40.0%
! GTGAAGATAGACGTGTTGAT+AGG - Chr5:16031282-16031301 MsG0580025256.01.T01:CDS 40.0%
! TGGTAACCGTCTTTTGCTTT+AGG - Chr5:16030544-16030563 MsG0580025256.01.T01:intron 40.0%
! TTTTGCATGCGATAAACGCA+TGG - Chr5:16031004-16031023 MsG0580025256.01.T01:CDS 40.0%
!! AACACAAGTTTGGCTCTGTT+TGG - Chr5:16030524-16030543 MsG0580025256.01.T01:intron 40.0%
!! GTTAGATGGGTTATACTGAC+CGG + Chr5:16030489-16030508 None:intergenic 40.0%
!! GTTGTATGGAGAAGGTGTTA+TGG - Chr5:16031323-16031342 MsG0580025256.01.T01:intron 40.0%
!! TGGATTGGTCAACACAAGTT+TGG - Chr5:16030514-16030533 MsG0580025256.01.T01:intron 40.0%
!!! AGAGTCAAGGTTTTTGGTGA+TGG - Chr5:16031433-16031452 MsG0580025256.01.T01:CDS 40.0%
AACCACCGAAACATGTCAAG+AGG + Chr5:16030879-16030898 None:intergenic 45.0%
ACCAATCCAATGCCGTTAGA+TGG + Chr5:16030503-16030522 None:intergenic 45.0%
ATCCTCTTGACATGTTTCGG+TGG - Chr5:16030874-16030893 MsG0580025256.01.T01:intron 45.0%
ATGAGAAGAAGGGAGAGTCA+AGG - Chr5:16031420-16031439 MsG0580025256.01.T01:CDS 45.0%
CCAATCCAATGCCGTTAGAT+GGG + Chr5:16030502-16030521 None:intergenic 45.0%
CTTATTGCTTTAGCGACACG+TGG - Chr5:16030437-16030456 MsG0580025256.01.T01:CDS 45.0%
GACTCGTCATTAGCATAACG+AGG + Chr5:16030949-16030968 None:intergenic 45.0%
GAGTGACATCACCAAGTTGT+CGG - Chr5:16031544-16031563 MsG0580025256.01.T01:CDS 45.0%
GATGGTGAAGAAGAGGATGA+TGG - Chr5:16031374-16031393 MsG0580025256.01.T01:intron 45.0%
GCGAAATCGTGAAGAAACGA+AGG + Chr5:16030807-16030826 None:intergenic 45.0%
GGATGTAGGTTGTATGGAGA+AGG - Chr5:16031315-16031334 MsG0580025256.01.T01:intron 45.0%
TAGGGGAGGAAATTGGATGT+AGG - Chr5:16031301-16031320 MsG0580025256.01.T01:intron 45.0%
TCCAATGCCGAAGATTTCTG+GGG - Chr5:16031257-16031276 MsG0580025256.01.T01:CDS 45.0%
TTCACCACCCCAGAAATCTT+CGG + Chr5:16031267-16031286 None:intergenic 45.0%
TTTGTCAGTGGAGCATGTGA+TGG - Chr5:16031073-16031092 MsG0580025256.01.T01:CDS 45.0%
! GAAGGGAGAGTCAAGGTTTT+TGG - Chr5:16031427-16031446 MsG0580025256.01.T01:CDS 45.0%
! GTGTTGATAGGGGAGGAAAT+TGG - Chr5:16031294-16031313 MsG0580025256.01.T01:CDS 45.0%
! TTTGATGGATCCGACCTTAC+CGG + Chr5:16030904-16030923 None:intergenic 45.0%
!! GTATGGAGAAGGTGTTATGG+CGG - Chr5:16031326-16031345 MsG0580025256.01.T01:intron 45.0%
AACGCATGGGATGAGGAAGA+TGG - Chr5:16031018-16031037 MsG0580025256.01.T01:CDS 50.0%
ACCCCAGAAATCTTCGGCAT+TGG + Chr5:16031261-16031280 None:intergenic 50.0%
ACGCATGGGATGAGGAAGAT+GGG - Chr5:16031019-16031038 MsG0580025256.01.T01:CDS 50.0%
CAAGACAACCGTTATCGGTG+AGG - Chr5:16031162-16031181 MsG0580025256.01.T01:intron 50.0%
CCTAAAGTAGACAGCGACAC+AGG - Chr5:16030673-16030692 MsG0580025256.01.T01:intron 50.0%
GACATGTTTCGGTGGTTCTC+CGG - Chr5:16030882-16030901 MsG0580025256.01.T01:intron 50.0%
TAACACCCGTGCTACAGCTA+CGG + Chr5:16030465-16030484 None:intergenic 50.0%
TCCGCCACAATCTCAAACTC+CGG + Chr5:16031470-16031489 None:intergenic 50.0%
TGCGATAAACGCATGGGATG+AGG - Chr5:16031011-16031030 MsG0580025256.01.T01:CDS 50.0%
! AATGCCGAAGATTTCTGGGG+TGG - Chr5:16031260-16031279 MsG0580025256.01.T01:CDS 50.0%
! CCCATCTAACGGCATTGGAT+TGG - Chr5:16030499-16030518 MsG0580025256.01.T01:intron 50.0%
! CCTGTGTCGCTGTCTACTTT+AGG + Chr5:16030676-16030695 None:intergenic 50.0%
! GATAGACGTGTTGATAGGGG+AGG - Chr5:16031287-16031306 MsG0580025256.01.T01:CDS 50.0%
! GGAGCATGTGATGGAGAGAA+TGG - Chr5:16031082-16031101 MsG0580025256.01.T01:intron 50.0%
!!! AGGGTGCCGTTTGGTTTTCA+TGG - Chr5:16031506-16031525 MsG0580025256.01.T01:CDS 50.0%
AAACCAAACGGCACCCTCCT+TGG + Chr5:16031503-16031522 None:intergenic 55.0%
ATGGGATGAGGAAGATGGGG+AGG - Chr5:16031023-16031042 MsG0580025256.01.T01:CDS 55.0%
ATGGGGAGGAAACAGTACCC+TGG - Chr5:16031037-16031056 MsG0580025256.01.T01:CDS 55.0%
CGCATGGGATGAGGAAGATG+GGG - Chr5:16031020-16031039 MsG0580025256.01.T01:CDS 55.0%
GAGGGAGGATGGTGAAGAAG+AGG - Chr5:16031367-16031386 MsG0580025256.01.T01:intron 55.0%
GCTGTAGCACGGGTGTTAAC+CGG - Chr5:16030467-16030486 MsG0580025256.01.T01:CDS 55.0%
GGAGGAAACAGTACCCTGGT+AGG - Chr5:16031041-16031060 MsG0580025256.01.T01:CDS 55.0%
GGAGGTGAAGTTGCCAAGGA+GGG - Chr5:16031487-16031506 MsG0580025256.01.T01:CDS 55.0%
GTGGATCCGTAGCTGTAGCA+CGG - Chr5:16030456-16030475 MsG0580025256.01.T01:CDS 55.0%
GTTTCGGTGGTTCTCCGGTA+AGG - Chr5:16030887-16030906 MsG0580025256.01.T01:intron 55.0%
TCCTCCCTCGCCACGAAAAA+CGG + Chr5:16031356-16031375 None:intergenic 55.0%
TGGATCCGTAGCTGTAGCAC+GGG - Chr5:16030457-16030476 MsG0580025256.01.T01:CDS 55.0%
! GCCGGAGTTTGAGATTGTGG+CGG - Chr5:16031466-16031485 MsG0580025256.01.T01:CDS 55.0%
! GGAGTTTGAGATTGTGGCGG+AGG - Chr5:16031469-16031488 MsG0580025256.01.T01:CDS 55.0%
! GTCGCCGGAGTTTGAGATTG+TGG - Chr5:16031463-16031482 MsG0580025256.01.T01:CDS 55.0%
! TTTTTCGTGGCGAGGGAGGA+TGG - Chr5:16031356-16031375 MsG0580025256.01.T01:intron 55.0%
CGGAGGTGAAGTTGCCAAGG+AGG - Chr5:16031486-16031505 MsG0580025256.01.T01:CDS 60.0%
CGGTGGTTCTCCGGTAAGGT+CGG - Chr5:16030891-16030910 MsG0580025256.01.T01:intron 60.0%
TGGCGGAGGTGAAGTTGCCA+AGG - Chr5:16031483-16031502 MsG0580025256.01.T01:CDS 60.0%
!! GGTGATGGATGCGAAGTCGC+CGG - Chr5:16031448-16031467 MsG0580025256.01.T01:CDS 60.0%
!! TTGCCAAGGAGGGTGCCGTT+TGG - Chr5:16031497-16031516 MsG0580025256.01.T01:CDS 60.0%
!!! CGAGCCGTTTTTCGTGGCGA+GGG - Chr5:16031349-16031368 MsG0580025256.01.T01:intron 60.0%
!!! GCCGTTTTTCGTGGCGAGGG+AGG - Chr5:16031352-16031371 MsG0580025256.01.T01:intron 65.0%
!!! GCGAGCCGTTTTTCGTGGCG+AGG - Chr5:16031348-16031367 MsG0580025256.01.T01:intron 65.0%
!!! TGGCGGCGAGCCGTTTTTCG+TGG - Chr5:16031343-16031362 MsG0580025256.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 16030305 16031574 16030305 ID=MsG0580025256.01;Name=MsG0580025256.01
Chr5 mRNA 16030305 16031574 16030305 ID=MsG0580025256.01.T01;Parent=MsG0580025256.01;Name=MsG0580025256.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|5|0|232
Chr5 exon 16031391 16031574 16031391 ID=MsG0580025256.01.T01:exon:18880;Parent=MsG0580025256.01.T01
Chr5 exon 16031185 16031313 16031185 ID=MsG0580025256.01.T01:exon:18879;Parent=MsG0580025256.01.T01
Chr5 exon 16030976 16031092 16030976 ID=MsG0580025256.01.T01:exon:18878;Parent=MsG0580025256.01.T01
Chr5 exon 16030821 16030884 16030821 ID=MsG0580025256.01.T01:exon:18877;Parent=MsG0580025256.01.T01
Chr5 exon 16030305 16030509 16030305 ID=MsG0580025256.01.T01:exon:18876;Parent=MsG0580025256.01.T01
Chr5 CDS 16031391 16031574 16031391 ID=MsG0580025256.01.T01:cds;Parent=MsG0580025256.01.T01
Chr5 CDS 16031185 16031313 16031185 ID=MsG0580025256.01.T01:cds;Parent=MsG0580025256.01.T01
Chr5 CDS 16030976 16031092 16030976 ID=MsG0580025256.01.T01:cds;Parent=MsG0580025256.01.T01
Chr5 CDS 16030821 16030884 16030821 ID=MsG0580025256.01.T01:cds;Parent=MsG0580025256.01.T01
Chr5 CDS 16030305 16030509 16030305 ID=MsG0580025256.01.T01:cds;Parent=MsG0580025256.01.T01
Gene Sequence

>MsG0580025256.01.T01

ATGCTTCATGCCGTTACAATCTCAAACGGGAAAGCCACACTATGTAGCCGTTATGTAAAAACCTACAAGTACAAAATCGAAAACGAAGCTGGTCACCAACTTATCCCAAACGTGTTTTCTGGTTTCAACTCGCTTATTGCTTTAGCGACACGTGGATCCGTAGCTGTAGCACGGGTGTTAACCGGAGAATCAGATCTTCCTTATGAAGTCAAACTAACTCCAAATGGTGACATCCAAACAATGGGCCGTTATGATTTTAACGGCAAACTCTTGATGAGTATGACGGCGCATCCTAAAGTAGACAGCGACACAGTATTGTCCATGAAAAGACCTTCGTTTCTTCACGATTTCGCCATTACTAAAAAATACGCTGTGTTCGCTGATATACAGCTTGAAATGAATCCTCTTGACATGTTTCGGTGGTTCTCCGGGTTTAATATTTTGCATGCGATAAACGCATGGGATGAGGAAGATGGGGAGGAAACAGTACCCTGGGAGGATGGTGAAGAAGAGGATGATGGTTATTTAGTGAGTTATGTGCATGATGAGAAGAAGGGAGAGTCAAGGTTTTTGGTGATGGATGCGAAGTCGCCGGAGTTTGAGATTGTGGCGGAGGTGAAGTTGCCAAGGAGGGTGCCGTTTGGTTTTCATGGATTGTTTGTGAAGGAGAGTGACATCACCAAGTTGTCGGTGTCGTAG

Protein sequence

>MsG0580025256.01.T01

MLHAVTISNGKATLCSRYVKTYKYKIENEAGHQLIPNVFSGFNSLIALATRGSVAVARVLTGESDLPYEVKLTPNGDIQTMGRYDFNGKLLMSMTAHPKVDSDTVLSMKRPSFLHDFAITKKYAVFADIQLEMNPLDMFRWFSGFNILHAINAWDEEDGEETVPWEDGEEEDDGYLVSYVHDEKKGESRFLVMDAKSPEFEIVAEVKLPRRVPFGFHGLFVKESDITKLSVS*