AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035075.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035075.01.T01 MTR_0110s0040 94.553 514 13 1 1 499 1 514 0.0 1003
MsG0680035075.01.T01 MTR_0110s0030 91.829 514 27 1 1 499 1 514 0.0 982
MsG0680035075.01.T01 MTR_0110s0040 97.600 375 9 0 1 375 1 375 0.0 768
MsG0680035075.01.T01 MTR_0110s0020 92.446 278 21 0 1 278 1 278 0.0 542
MsG0680035075.01.T01 MTR_4g083000 50.699 501 225 6 20 499 6 505 4.17e-178 510
MsG0680035075.01.T01 MTR_4g081530 50.947 475 211 5 43 495 24 498 1.76e-167 483
MsG0680035075.01.T01 MTR_5g044000 50.403 496 203 8 43 495 25 520 2.10e-167 483
MsG0680035075.01.T01 MTR_6g078380 50.198 506 223 9 20 498 11 514 5.85e-167 482
MsG0680035075.01.T01 MTR_6g078450 48.713 505 231 8 20 498 11 513 3.08e-166 480
MsG0680035075.01.T01 MTR_4g066240 48.718 507 234 10 14 497 9 512 8.49e-165 476
MsG0680035075.01.T01 MTR_3g033810 50.636 472 204 7 43 495 21 482 1.62e-164 475
MsG0680035075.01.T01 MTR_3g026400 48.611 504 239 5 15 499 9 511 4.15e-164 474
MsG0680035075.01.T01 MTR_6g078330 48.323 507 232 8 19 499 13 515 5.26e-164 474
MsG0680035075.01.T01 MTR_4g066240 48.622 508 234 11 14 497 9 513 3.47e-163 472
MsG0680035075.01.T01 MTR_2g098520 49.378 482 222 6 38 497 29 510 7.50e-163 471
MsG0680035075.01.T01 MTR_3g033790 50.318 471 206 7 43 495 19 479 1.51e-162 469
MsG0680035075.01.T01 MTR_4g066630 49.491 491 224 7 29 496 25 514 6.88e-162 469
MsG0680035075.01.T01 MTR_4g066590 47.647 510 241 9 13 498 3 510 8.29e-161 466
MsG0680035075.01.T01 MTR_2g098790 47.104 518 248 8 2 497 1 514 1.64e-160 465
MsG0680035075.01.T01 MTR_3g026620 48.521 507 240 7 13 499 7 512 2.73e-160 465
MsG0680035075.01.T01 MTR_2g098540 47.714 503 239 7 17 497 7 507 2.94e-160 464
MsG0680035075.01.T01 MTR_4g066580 47.059 510 244 7 15 498 7 516 1.79e-159 463
MsG0680035075.01.T01 MTR_4g066210 49.372 478 218 8 43 497 43 519 2.77e-156 455
MsG0680035075.01.T01 MTR_3g028720 46.351 507 249 7 15 498 9 515 1.19e-154 451
MsG0680035075.01.T01 MTR_3g026400 50.107 467 211 6 52 499 17 480 1.36e-154 449
MsG0680035075.01.T01 MTR_4g131810 46.526 475 231 6 48 499 33 507 1.02e-153 448
MsG0680035075.01.T01 MTR_4g066640 47.162 511 243 10 11 497 6 513 5.11e-153 446
MsG0680035075.01.T01 MTR_3g026280 49.895 475 217 7 40 495 19 491 1.46e-151 442
MsG0680035075.01.T01 MTR_2g079580 45.738 481 242 4 34 495 23 503 2.29e-151 442
MsG0680035075.01.T01 MTR_2g022760 45.882 510 245 8 15 499 10 513 2.39e-151 442
MsG0680035075.01.T01 MTR_2g079550 45.946 481 241 4 34 495 21 501 6.79e-151 441
MsG0680035075.01.T01 MTR_5g071520 46.139 518 245 8 14 497 7 524 9.93e-151 441
MsG0680035075.01.T01 MTR_4g023000 47.780 473 227 6 43 497 24 494 4.83e-149 435
MsG0680035075.01.T01 MTR_2g022710 45.073 477 242 5 43 499 35 511 7.56e-149 436
MsG0680035075.01.T01 MTR_4g083000 52.311 411 175 5 110 499 1 411 3.69e-148 430
MsG0680035075.01.T01 MTR_2g098540 48.690 458 213 6 62 497 6 463 4.98e-148 432
MsG0680035075.01.T01 MTR_4g066340 50.694 432 192 6 87 497 8 439 1.92e-146 427
MsG0680035075.01.T01 MTR_4g066330 43.269 520 246 8 2 498 1 494 1.07e-145 427
MsG0680035075.01.T01 MTR_4g131800 46.512 473 231 5 48 499 521 992 3.86e-145 442
MsG0680035075.01.T01 MTR_6g078450 48.815 422 195 5 43 443 36 457 3.57e-140 411
MsG0680035075.01.T01 MTR_4g016920 44.374 471 244 5 42 498 26 492 1.50e-139 412
MsG0680035075.01.T01 MTR_4g066630 48.165 436 203 6 29 442 25 459 3.24e-138 407
MsG0680035075.01.T01 MTR_4g066280 42.315 501 240 8 20 497 19 493 1.68e-136 403
MsG0680035075.01.T01 MTR_6g078330 49.392 411 187 5 110 499 1 411 7.71e-136 399
MsG0680035075.01.T01 MTR_5g068740 42.942 503 257 8 7 495 2 488 1.27e-134 399
MsG0680035075.01.T01 MTR_1g088610 43.738 503 252 8 7 495 2 487 1.71e-134 403
MsG0680035075.01.T01 MTR_1g088610 37.815 119 68 2 383 499 502 616 1.42e-17 86.3
MsG0680035075.01.T01 MTR_4g066630 49.500 400 183 4 29 409 25 424 2.03e-133 394
MsG0680035075.01.T01 MTR_7g068910 43.856 472 245 6 42 498 30 496 3.29e-133 396
MsG0680035075.01.T01 MTR_4g066240 47.596 416 195 8 14 409 9 421 2.25e-131 388
MsG0680035075.01.T01 MTR_4g015420 42.126 508 238 9 23 499 45 527 2.47e-131 391
MsG0680035075.01.T01 MTR_3g028720 44.789 451 227 6 15 443 9 459 2.11e-130 387
MsG0680035075.01.T01 MTR_3g026400 52.924 342 160 1 15 355 9 350 3.15e-130 383
MsG0680035075.01.T01 MTR_7g068910 42.946 482 245 7 42 498 30 506 5.76e-130 388
MsG0680035075.01.T01 MTR_4g066580 46.651 418 200 5 15 409 7 424 1.65e-129 383
MsG0680035075.01.T01 MTR_2g022760 47.689 411 193 5 110 499 1 410 1.57e-128 380
MsG0680035075.01.T01 MTR_4g067040 47.772 404 191 5 13 396 3 406 9.78e-128 378
MsG0680035075.01.T01 MTR_4g067040 50.411 365 176 4 13 372 3 367 8.37e-126 372
MsG0680035075.01.T01 MTR_6g078330 47.859 397 188 4 122 499 15 411 3.19e-125 372
MsG0680035075.01.T01 MTR_2g043200 43.205 493 228 8 31 497 53 519 4.29e-125 375
MsG0680035075.01.T01 MTR_3g028720 45.783 415 205 5 15 409 9 423 8.02e-125 371
MsG0680035075.01.T01 MTR_4g066630 51.724 348 164 3 29 372 25 372 8.04e-125 369
MsG0680035075.01.T01 MTR_4g015460 41.096 511 236 10 25 499 22 503 1.59e-123 370
MsG0680035075.01.T01 MTR_6g078330 48.518 371 179 5 19 381 13 379 1.79e-123 366
MsG0680035075.01.T01 MTR_2g022710 43.810 420 216 5 43 442 35 454 4.78e-123 368
MsG0680035075.01.T01 MTR_7g033860 41.684 475 242 11 45 496 50 512 9.85e-123 369
MsG0680035075.01.T01 MTR_2g022710 43.810 420 216 5 43 442 35 454 1.00e-122 367
MsG0680035075.01.T01 MTR_2g022710 44.390 410 208 5 110 499 1 410 2.12e-121 362
MsG0680035075.01.T01 MTR_0108s0030 41.703 458 248 9 45 496 5 449 2.66e-121 363
MsG0680035075.01.T01 MTR_2g079580 45.833 384 191 3 43 409 32 415 8.77e-121 360
MsG0680035075.01.T01 MTR_4g066640 50.000 368 175 7 11 372 6 370 3.57e-120 358
MsG0680035075.01.T01 MTR_2g022710 45.195 385 193 4 43 409 35 419 6.16e-120 358
MsG0680035075.01.T01 MTR_3g028720 47.154 369 187 4 12 372 3 371 1.31e-116 349
MsG0680035075.01.T01 MTR_4g016920 43.921 403 208 5 110 498 1 399 3.57e-114 344
MsG0680035075.01.T01 MTR_2g022710 44.892 372 187 4 43 396 35 406 3.30e-113 341
MsG0680035075.01.T01 MTR_1g088630 41.741 448 217 8 62 495 14 431 5.68e-113 342
MsG0680035075.01.T01 MTR_2g022710 49.211 317 160 1 43 358 35 351 1.20e-112 340
MsG0680035075.01.T01 MTR_7g051510 40.803 473 246 10 44 497 76 533 4.86e-111 340
MsG0680035075.01.T01 MTR_7g068900 43.552 411 209 7 105 498 17 421 5.24e-109 333
MsG0680035075.01.T01 MTR_7g051610 40.126 476 243 11 44 496 76 532 3.21e-106 327
MsG0680035075.01.T01 MTR_7g051650 39.241 474 251 10 44 496 76 533 5.25e-106 327
MsG0680035075.01.T01 MTR_7g051650 38.608 474 250 10 44 496 76 529 6.01e-104 321
MsG0680035075.01.T01 MTR_1g088630 46.106 321 145 3 40 358 24 318 1.61e-93 289
MsG0680035075.01.T01 MTR_4g016920 53.226 248 115 1 110 356 1 248 8.85e-92 282
MsG0680035075.01.T01 MTR_7g056747 40.852 399 221 9 104 496 9 398 5.76e-90 281
MsG0680035075.01.T01 MTR_1g088630 50.373 268 129 2 40 305 24 289 2.06e-87 271
MsG0680035075.01.T01 MTR_8g038650 47.826 92 48 0 265 356 57 148 5.19e-22 93.2
MsG0680035075.01.T01 MTR_4g122980 25.547 411 244 14 102 499 175 536 8.67e-20 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035075.01.T01 AT3G18080 76.892 489 97 2 25 497 21 509 0.0 784
MsG0680035075.01.T01 AT3G18070 71.487 491 112 4 25 499 16 494 0.0 733
MsG0680035075.01.T01 AT3G18070 71.283 491 119 4 25 499 16 500 0.0 730
MsG0680035075.01.T01 AT3G18070 73.714 350 85 3 26 374 17 360 0.0 545
MsG0680035075.01.T01 AT3G18070 71.818 330 77 2 186 499 94 423 4.23e-176 502
MsG0680035075.01.T01 AT3G18070 63.750 80 25 1 25 104 16 91 1.64e-25 108
MsG0680035075.01.T01 AT3G18070 72.990 311 68 2 205 499 1 311 4.03e-169 479
MsG0680035075.01.T01 AT1G26560 50.105 475 215 6 43 495 32 506 2.30e-167 483
MsG0680035075.01.T01 AT5G54570 51.245 482 212 6 37 495 24 505 2.15e-165 479
MsG0680035075.01.T01 AT5G44640 47.929 507 238 9 13 499 5 505 8.65e-156 453
MsG0680035075.01.T01 AT2G44450 49.792 480 218 7 40 499 28 504 6.42e-153 446
MsG0680035075.01.T01 AT1G61820 48.414 473 220 7 48 497 35 506 2.53e-152 444
MsG0680035075.01.T01 AT1G02850 48.180 467 219 7 44 495 27 485 3.72e-152 443
MsG0680035075.01.T01 AT5G42260 47.610 502 237 8 10 491 2 497 2.48e-150 439
MsG0680035075.01.T01 AT2G44480 46.186 485 239 6 33 496 26 509 1.50e-149 437
MsG0680035075.01.T01 AT2G25630 47.667 493 238 9 17 499 5 487 1.54e-149 436
MsG0680035075.01.T01 AT2G44480 46.186 485 239 6 33 496 57 540 3.75e-149 437
MsG0680035075.01.T01 AT4G21760 46.087 460 237 4 48 499 59 515 1.32e-148 436
MsG0680035075.01.T01 AT5G36890 46.186 485 225 7 31 495 11 479 1.60e-148 434
MsG0680035075.01.T01 AT5G36890 46.186 485 225 7 31 495 11 479 1.60e-148 434
MsG0680035075.01.T01 AT4G21760 45.319 470 236 4 48 499 59 525 3.67e-148 435
MsG0680035075.01.T01 AT1G02850 46.122 490 218 8 44 495 27 508 8.36e-148 433
MsG0680035075.01.T01 AT1G02850 46.029 491 218 9 44 495 27 509 2.88e-146 429
MsG0680035075.01.T01 AT5G54570 50.351 427 191 4 37 442 24 450 3.05e-144 422
MsG0680035075.01.T01 AT5G24550 44.841 504 252 8 20 497 8 511 2.63e-143 422
MsG0680035075.01.T01 AT3G60130 47.158 475 225 8 43 495 30 500 2.99e-142 419
MsG0680035075.01.T01 AT1G02850 46.039 467 202 8 44 495 27 458 4.72e-142 417
MsG0680035075.01.T01 AT1G61810 45.551 472 235 6 48 497 38 509 1.32e-141 417
MsG0680035075.01.T01 AT4G27830 43.200 500 250 9 12 495 3 484 4.23e-141 416
MsG0680035075.01.T01 AT5G54570 51.471 408 176 5 110 495 1 408 3.22e-137 403
MsG0680035075.01.T01 AT3G60140 43.452 504 255 9 18 497 7 504 5.15e-137 407
MsG0680035075.01.T01 AT1G61810 45.633 458 227 6 48 483 38 495 3.17e-136 404
MsG0680035075.01.T01 AT5G24540 45.437 504 249 8 20 497 8 511 5.10e-136 404
MsG0680035075.01.T01 AT1G60090 41.818 495 255 7 15 495 7 482 4.06e-135 400
MsG0680035075.01.T01 AT2G44470 42.717 508 259 9 17 497 5 507 4.98e-135 403
MsG0680035075.01.T01 AT2G44460 45.276 508 251 10 15 498 3 507 1.09e-134 402
MsG0680035075.01.T01 AT4G27820 44.989 469 235 7 42 495 22 482 2.40e-134 398
MsG0680035075.01.T01 AT1G60090 41.283 499 259 7 15 495 7 489 2.69e-134 398
MsG0680035075.01.T01 AT1G51470 44.444 486 239 11 34 497 35 511 6.82e-132 392
MsG0680035075.01.T01 AT4G22100 42.275 466 247 7 45 495 24 482 2.74e-131 390
MsG0680035075.01.T01 AT1G47600 44.513 483 242 12 34 497 35 510 1.43e-130 389
MsG0680035075.01.T01 AT1G47600 44.421 484 242 12 34 497 35 511 2.38e-130 388
MsG0680035075.01.T01 AT1G45191 42.333 463 253 5 44 498 30 486 1.20e-129 386
MsG0680035075.01.T01 AT1G75940 44.444 486 232 12 43 495 37 517 4.62e-128 383
MsG0680035075.01.T01 AT2G44490 42.678 478 246 10 45 495 16 492 1.70e-127 383
MsG0680035075.01.T01 AT3G62750 41.996 481 243 9 31 495 13 473 6.83e-127 379
MsG0680035075.01.T01 AT3G21370 43.461 497 244 13 28 495 23 511 7.00e-127 380
MsG0680035075.01.T01 AT3G62750 41.996 481 243 9 31 495 39 499 2.10e-126 379
MsG0680035075.01.T01 AT3G09260 41.633 502 263 10 20 497 17 512 5.79e-126 377
MsG0680035075.01.T01 AT2G44480 46.437 407 198 4 110 496 1 407 9.38e-126 373
MsG0680035075.01.T01 AT1G45191 41.365 469 255 6 44 498 30 492 1.37e-125 376
MsG0680035075.01.T01 AT1G45191 41.139 474 254 6 44 498 30 497 3.45e-125 375
MsG0680035075.01.T01 AT1G66280 42.270 511 266 11 10 495 4 510 5.61e-125 375
MsG0680035075.01.T01 AT5G28510 41.683 511 267 12 16 497 13 521 1.16e-124 374
MsG0680035075.01.T01 AT5G26000 42.270 511 260 10 15 495 6 511 2.29e-124 374
MsG0680035075.01.T01 AT3G60120 43.685 483 239 11 43 497 14 491 2.47e-124 374
MsG0680035075.01.T01 AT1G45191 40.664 482 257 6 44 498 30 509 8.28e-124 372
MsG0680035075.01.T01 AT1G02850 47.015 402 173 6 44 409 27 424 1.65e-123 368
MsG0680035075.01.T01 AT3G03640 41.879 511 259 13 18 497 11 514 4.65e-123 370
MsG0680035075.01.T01 AT1G66270 42.032 502 258 11 21 497 19 512 6.04e-123 370
MsG0680035075.01.T01 AT3G18070 70.954 241 54 2 186 410 94 334 1.95e-122 362
MsG0680035075.01.T01 AT3G18070 63.750 80 25 1 25 104 16 91 5.53e-26 108
MsG0680035075.01.T01 AT2G32860 42.558 477 249 8 48 499 99 575 1.28e-121 369
MsG0680035075.01.T01 AT2G32860 43.067 476 247 10 48 499 99 574 3.23e-121 368
MsG0680035075.01.T01 AT1G61810 45.477 409 202 5 110 497 1 409 7.64e-121 361
MsG0680035075.01.T01 AT1G66270 41.633 502 258 12 21 497 19 510 1.65e-119 361
MsG0680035075.01.T01 AT1G52400 43.361 482 239 14 43 495 39 515 1.99e-119 361
MsG0680035075.01.T01 AT1G52400 43.361 482 239 14 43 495 39 515 1.99e-119 361
MsG0680035075.01.T01 AT3G60130 46.247 413 197 7 104 495 40 448 1.21e-118 357
MsG0680035075.01.T01 AT3G60130 46.517 402 201 7 104 495 40 437 1.19e-117 353
MsG0680035075.01.T01 AT3G18070 72.523 222 45 2 205 410 1 222 3.01e-115 339
MsG0680035075.01.T01 AT3G62740 38.229 497 264 10 17 495 7 478 1.30e-114 348
MsG0680035075.01.T01 AT5G24540 44.072 447 226 6 20 442 8 454 1.39e-114 346
MsG0680035075.01.T01 AT4G27830 44.030 402 203 7 110 495 1 396 1.68e-114 344
MsG0680035075.01.T01 AT5G25980 40.408 490 259 11 32 495 40 522 4.66e-114 348
MsG0680035075.01.T01 AT2G44470 41.150 452 234 9 17 442 5 450 1.39e-112 341
MsG0680035075.01.T01 AT1G61820 47.945 365 168 5 154 497 4 367 1.68e-111 335
MsG0680035075.01.T01 AT1G61810 44.241 382 193 5 48 409 38 419 1.28e-109 332
MsG0680035075.01.T01 AT4G27820 44.389 401 204 6 110 495 1 397 1.98e-109 332
MsG0680035075.01.T01 AT4G27820 44.389 401 204 6 110 495 1 397 1.98e-109 332
MsG0680035075.01.T01 AT5G26000 41.978 455 232 8 15 442 6 455 2.18e-109 333
MsG0680035075.01.T01 AT2G44480 50.467 321 154 4 33 350 57 375 5.69e-109 329
MsG0680035075.01.T01 AT1G60270 46.111 360 179 5 43 391 24 379 6.95e-109 328
MsG0680035075.01.T01 AT3G62750 41.492 429 217 8 31 445 39 447 7.91e-109 331
MsG0680035075.01.T01 AT3G60140 41.748 412 214 6 18 409 7 412 1.83e-107 328
MsG0680035075.01.T01 AT2G44450 48.596 356 163 5 161 499 1 353 3.53e-105 318
MsG0680035075.01.T01 AT3G62750 42.040 402 203 7 110 495 1 388 1.64e-103 316
MsG0680035075.01.T01 AT3G62750 42.040 402 203 7 110 495 1 388 1.64e-103 316
MsG0680035075.01.T01 AT1G45191 45.015 331 176 2 44 372 30 356 1.41e-102 314
MsG0680035075.01.T01 AT1G45191 45.015 331 176 2 44 372 30 356 1.42e-102 313
MsG0680035075.01.T01 AT3G62740 38.462 442 231 9 17 442 7 423 3.98e-101 310
MsG0680035075.01.T01 AT1G52400 42.623 427 213 12 43 442 39 460 1.48e-100 310
MsG0680035075.01.T01 AT2G44470 43.407 364 192 7 17 372 5 362 7.85e-100 306
MsG0680035075.01.T01 AT5G25980 39.631 434 232 9 32 442 40 466 1.49e-99 308
MsG0680035075.01.T01 AT5G25980 39.631 434 232 9 32 442 40 466 1.49e-99 308
MsG0680035075.01.T01 AT3G62750 44.785 326 166 3 31 356 13 324 5.67e-97 298
MsG0680035075.01.T01 AT3G62750 44.785 326 166 3 31 356 13 324 5.67e-97 298
MsG0680035075.01.T01 AT3G62750 44.785 326 166 3 31 356 39 350 3.16e-96 298
MsG0680035075.01.T01 AT2G44460 45.833 360 172 8 161 498 3 361 6.32e-92 287
MsG0680035075.01.T01 AT1G61810 47.909 263 135 2 48 308 38 300 6.75e-85 265
MsG0680035075.01.T01 AT5G48375 38.293 410 184 8 70 461 53 411 7.55e-84 266
MsG0680035075.01.T01 AT1G60270 45.051 293 149 4 110 391 1 292 2.01e-83 260
MsG0680035075.01.T01 AT2G44480 44.224 303 151 3 212 496 1 303 1.38e-81 256
MsG0680035075.01.T01 AT1G51490 40.181 331 170 11 50 371 27 338 1.96e-69 228
MsG0680035075.01.T01 AT5G16580 39.249 293 152 7 178 451 12 297 3.70e-53 182
MsG0680035075.01.T01 AT3G06510 26.485 404 239 16 105 499 159 513 7.84e-19 90.1

Find 103 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTCATCCCCTTGTTTA+TGG 0.184377 6:+98544377 MsG0680035075.01.T01:CDS
CCTATGTACTTATCTGAAAA+TGG 0.261140 6:+98545162 MsG0680035075.01.T01:CDS
GTTCTTGTTAGTTCAGTTAA+TGG 0.269019 6:+98541578 MsG0680035075.01.T01:CDS
GTATCCAAATGCACTGTTTC+AGG 0.271354 6:-98541611 None:intergenic
AGGGTCGTGGCCCTAGTATT+TGG 0.275337 6:+98541723 MsG0680035075.01.T01:CDS
TTCTTGTTAGTTCAGTTAAT+GGG 0.276549 6:+98541579 MsG0680035075.01.T01:CDS
AACCAATATGCAGACATCTT+AGG 0.282698 6:-98545534 None:intergenic
CTTCCTCCTTAGTGAACTTT+GGG 0.285927 6:-98544442 None:intergenic
GCTGCTCTTGGCTATGATAA+TGG 0.303187 6:+98543555 MsG0680035075.01.T01:CDS
AATTGTACAGCTGGAAATTC+AGG 0.314656 6:+98543615 MsG0680035075.01.T01:CDS
GATAACTTTGAATGGAGATT+AGG 0.315709 6:+98545456 MsG0680035075.01.T01:CDS
ATAACTTTGAATGGAGATTA+GGG 0.318193 6:+98545457 MsG0680035075.01.T01:CDS
ATGGAACTGGCAAAGTAAAT+TGG 0.320592 6:+98543085 MsG0680035075.01.T01:CDS
GGAAGGTGTTCAAAAGAATA+TGG 0.324523 6:+98543591 MsG0680035075.01.T01:CDS
GATTGATAGCCAGGGACTTT+TGG 0.337835 6:-98544548 None:intergenic
ACCAATATGCAGACATCTTA+GGG 0.340920 6:-98545533 None:intergenic
ACAGGAATTGTCGCAAATAA+TGG 0.342164 6:+98542628 MsG0680035075.01.T01:intron
TTTGGATAAAAGGCCTCTTT+TGG 0.344761 6:+98545642 MsG0680035075.01.T01:three_prime_UTR
AAATTGTGAGCTACAGTATA+AGG 0.347951 6:-98543645 None:intergenic
GAAACAGTGCATTTGGATAC+TGG 0.355962 6:+98541614 MsG0680035075.01.T01:CDS
ACTTCCTCCTTAGTGAACTT+TGG 0.357250 6:-98544443 None:intergenic
TTTCCTAAAGGGTTTGTGTT+TGG 0.360877 6:+98541656 MsG0680035075.01.T01:CDS
ACTCCAAACACAAACCCTTT+AGG 0.380059 6:-98541659 None:intergenic
TGGTAGTGAATAATGTGTTT+TGG 0.386199 6:+98545624 MsG0680035075.01.T01:three_prime_UTR
AGAGCTAGAGACTTTCATAT+TGG 0.394867 6:+98544045 MsG0680035075.01.T01:CDS
GGGTCGTGGCCCTAGTATTT+GGG 0.395338 6:+98541724 MsG0680035075.01.T01:CDS
CCCCTAAGATGTCTGCATAT+TGG 0.396318 6:+98545532 MsG0680035075.01.T01:CDS
CATTGCTTGATAACTTTGAA+TGG 0.399596 6:+98545448 MsG0680035075.01.T01:CDS
ACTAGTATTGTCTTTGAAGA+TGG 0.407904 6:+98541496 MsG0680035075.01.T01:exon
ATGAAAACATCCCAAATACT+AGG 0.410209 6:-98541734 None:intergenic
TCAGCCTTTGATCTTGTAAG+AGG 0.416498 6:-98544006 None:intergenic
GATGATGGAGCAAATGTGTT+TGG 0.416603 6:+98545411 MsG0680035075.01.T01:CDS
CCAAGAGTTGTTGCTGCTCT+TGG 0.417648 6:+98543543 MsG0680035075.01.T01:CDS
TTCCAATCCGATTGATAGCC+AGG 0.422659 6:-98544557 None:intergenic
ATTTGTAGGTATGGATGATC+CGG 0.427079 6:+98545302 MsG0680035075.01.T01:intron
AAGATATAGAGAGAAATATC+AGG 0.431598 6:+98543695 MsG0680035075.01.T01:CDS
GAAAAGCAAAAGGGTAGGAT+TGG 0.432684 6:+98543955 MsG0680035075.01.T01:CDS
ATGGAGACAGAGTGAAGAAC+TGG 0.441462 6:+98543505 MsG0680035075.01.T01:CDS
AGAACTATGCAAAATATTGT+TGG 0.445283 6:+98544410 MsG0680035075.01.T01:CDS
TGTGTTAGTGCTTCAATCAT+AGG 0.447465 6:-98545749 None:intergenic
ATCGATTACTTGCTCGAAAA+GGG 0.448910 6:+98543135 MsG0680035075.01.T01:CDS
GAATATGGAAATTGTACAGC+TGG 0.451912 6:+98543606 MsG0680035075.01.T01:CDS
GTCTTTGAAGATGGTGATGT+TGG 0.452280 6:+98541505 MsG0680035075.01.T01:exon
CTAAAGAAAGCTATAGATGA+TGG 0.459612 6:+98545396 MsG0680035075.01.T01:CDS
AACTTTGATGCAGATGGAAC+TGG 0.459795 6:+98543072 MsG0680035075.01.T01:intron
GAACTATGCAAAATATTGTT+GGG 0.468791 6:+98544411 MsG0680035075.01.T01:CDS
AGTGCCTGAAACAGTGCATT+TGG 0.469335 6:+98541607 MsG0680035075.01.T01:CDS
GATCGATTACTTGCTCGAAA+AGG 0.469757 6:+98543134 MsG0680035075.01.T01:CDS
GTTTGTGTCACAGTTATGTC+TGG 0.471489 6:-98545776 None:intergenic
TTAGGGTACACATCAAGGTT+TGG 0.474691 6:+98545474 MsG0680035075.01.T01:CDS
TATTTCAACTCGAGAGCTAA+AGG 0.475144 6:-98543300 None:intergenic
ATTGATACCAACAAAATCAA+TGG 0.477296 6:-98544483 None:intergenic
CCAAGAGCAGCAACAACTCT+TGG 0.484195 6:-98543543 None:intergenic
GGAGATTAGGGTACACATCA+AGG 0.485807 6:+98545469 MsG0680035075.01.T01:CDS
GAGCTAAAGGAAGGTCATAA+TGG 0.487554 6:-98543287 None:intergenic
GACTTGATTAATGCAAGTCT+TGG 0.490418 6:+98545685 MsG0680035075.01.T01:three_prime_UTR
TGCTTATCAAGTAGAGGGTA+TGG 0.494673 6:+98541691 MsG0680035075.01.T01:CDS
AAAAGTCCCTGGCTATCAAT+CGG 0.514691 6:+98544550 MsG0680035075.01.T01:CDS
CTAGAGACTTTCATATTGGA+TGG 0.515205 6:+98544049 MsG0680035075.01.T01:CDS
TGTTGTGTCATGCAAACCCT+TGG 0.515909 6:-98545340 None:intergenic
TTGGCTATACAATGTACCAT+GGG 0.531425 6:+98545092 MsG0680035075.01.T01:CDS
TCCCTGGCTATCAATCGGAT+TGG 0.537085 6:+98544555 MsG0680035075.01.T01:CDS
GTTTCTTAAGATTCTAATTG+TGG 0.539219 6:+98545604 MsG0680035075.01.T01:three_prime_UTR
GCAGGAAGATATAGATCTCA+TGG 0.540465 6:+98542910 MsG0680035075.01.T01:intron
AACTTCTGCTTATCAAGTAG+AGG 0.544999 6:+98541685 MsG0680035075.01.T01:CDS
GAGGGTATGGCTAGCAAAGA+GGG 0.549403 6:+98541704 MsG0680035075.01.T01:CDS
CAAATCATTAATGTACATCA+AGG 0.552581 6:+98545122 MsG0680035075.01.T01:CDS
TTTAGGAAAAGCAAAAGGGT+AGG 0.554677 6:+98543950 MsG0680035075.01.T01:intron
TCTTGTTAGTTCAGTTAATG+GGG 0.559570 6:+98541580 MsG0680035075.01.T01:CDS
TACATTGTAGAGACCAAAAG+AGG 0.560172 6:-98545655 None:intergenic
TTAGTACTTACACAACGTTA+CGG 0.561802 6:-98543338 None:intergenic
TTGGAAAATGTTACATTACC+CGG 0.563963 6:-98545321 None:intergenic
TGAAAACATCCCAAATACTA+GGG 0.582780 6:-98541733 None:intergenic
TAATGGTAGAGATTTGCATA+AGG 0.585059 6:-98543270 None:intergenic
ACAAGAATAAACTATTACAA+AGG 0.585424 6:+98545360 MsG0680035075.01.T01:CDS
TGGACCATGAGATTGAGAAC+CGG 0.587343 6:-98542955 None:intergenic
ATTGTCGCAAATAATGGCAC+AGG 0.588601 6:+98542634 MsG0680035075.01.T01:CDS
CAAGCAAAACCAAAAGTCCC+TGG 0.590365 6:+98544539 MsG0680035075.01.T01:CDS
GGAGGAAGTGAATCTTGTGA+AGG 0.592011 6:+98544457 MsG0680035075.01.T01:CDS
GAGGAAGTGAATCTTGTGAA+GGG 0.593860 6:+98544458 MsG0680035075.01.T01:CDS
TTTCAGATAAGTACATAGGT+GGG 0.594742 6:-98545158 None:intergenic
CAGACTCCCAAAGTTCACTA+AGG 0.598238 6:+98544436 MsG0680035075.01.T01:CDS
ACTTCTGCTTATCAAGTAGA+GGG 0.604107 6:+98541686 MsG0680035075.01.T01:CDS
CTTGGCTATACAATGTACCA+TGG 0.606444 6:+98545091 MsG0680035075.01.T01:CDS
TGAGCCTCTTACAAGATCAA+AGG 0.608751 6:+98544002 MsG0680035075.01.T01:CDS
AGAGGGTATGGCTAGCAAAG+AGG 0.611917 6:+98541703 MsG0680035075.01.T01:CDS
ATGTGTTTGGATATCATGCT+TGG 0.611957 6:+98545424 MsG0680035075.01.T01:CDS
ATGGCTAGCAAAGAGGGTCG+TGG 0.616104 6:+98541710 MsG0680035075.01.T01:CDS
AATGATTTGTATAAGCCCCA+TGG 0.619036 6:-98545108 None:intergenic
TTTGTAGGTATGGATGATCC+GGG 0.619449 6:+98545303 MsG0680035075.01.T01:intron
TCCAATCCGATTGATAGCCA+GGG 0.623481 6:-98544556 None:intergenic
TCAACTCGAGAGCTAAAGGA+AGG 0.625800 6:-98543296 None:intergenic
TTGGATACTCACCATAAACA+AGG 0.626001 6:-98544388 None:intergenic
AATACCGGTTCTCAATCTCA+TGG 0.626644 6:+98542951 MsG0680035075.01.T01:CDS
CAGTGCATTTGGATACTGGA+GGG 0.628351 6:+98541618 MsG0680035075.01.T01:CDS
ACTGGCAAAGTAAATTGGAA+AGG 0.635766 6:+98543090 MsG0680035075.01.T01:CDS
TGGATACTCACCATAAACAA+GGG 0.638550 6:-98544387 None:intergenic
GCTCTCGAGTTGAAATACAA+CGG 0.657864 6:+98543306 MsG0680035075.01.T01:CDS
GGATACTCACCATAAACAAG+GGG 0.663952 6:-98544386 None:intergenic
ACTCCCAAAGTTCACTAAGG+AGG 0.671178 6:+98544439 MsG0680035075.01.T01:CDS
ACAGTGCATTTGGATACTGG+AGG 0.685224 6:+98541617 MsG0680035075.01.T01:CDS
CCAATATGCAGACATCTTAG+GGG 0.704502 6:-98545532 None:intergenic
TGGCTATACAATGTACCATG+GGG 0.741096 6:+98545093 MsG0680035075.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTAATATTTTTAAAAA+TGG - Chr6:98544618-98544637 None:intergenic 0.0%
!!! TGATTTTTTCAAATTATTAA+CGG + Chr6:98544255-98544274 MsG0680035075.01.T01:intron 10.0%
!!! TTAATCTCTTTTAAAAAAAT+TGG + Chr6:98542350-98542369 MsG0680035075.01.T01:intron 10.0%
!! AAGAATAATTAATTGAGATT+AGG - Chr6:98541785-98541804 None:intergenic 15.0%
!! ACATTATATAATATGTTGTT+TGG - Chr6:98542798-98542817 None:intergenic 15.0%
!! ATAGAAATATTTGAATTACT+TGG - Chr6:98542989-98543008 None:intergenic 15.0%
!!! AAATGTGATTTTGTTTTATA+TGG + Chr6:98543396-98543415 MsG0680035075.01.T01:intron 15.0%
!!! ATATTTTTAAAAATGGTTGA+AGG - Chr6:98544611-98544630 None:intergenic 15.0%
!!! GTAAATATTTAATGATTTGT+AGG + Chr6:98545288-98545307 MsG0680035075.01.T01:intron 15.0%
!! AAATTAACAAATATGAAGCA+CGG - Chr6:98544322-98544341 None:intergenic 20.0%
!! AAGAAGATTGAAATAGAAAA+AGG - Chr6:98542103-98542122 None:intergenic 20.0%
!! AATTTCTTAGTGTATCTTTA+TGG + Chr6:98544337-98544356 MsG0680035075.01.T01:intron 20.0%
!! ACAAGAATAAACTATTACAA+AGG + Chr6:98545360-98545379 MsG0680035075.01.T01:CDS 20.0%
!! TAAGTACTAAAATACCTTTA+TGG + Chr6:98543351-98543370 MsG0680035075.01.T01:intron 20.0%
!! TATTGTTTCAAATTCATAAC+AGG + Chr6:98542610-98542629 MsG0680035075.01.T01:intron 20.0%
!! TTTCTAATTGAAGAAATTGT+TGG + Chr6:98544087-98544106 MsG0680035075.01.T01:intron 20.0%
!!! AAAATGAAGCATTCAAATAA+AGG - Chr6:98545210-98545229 None:intergenic 20.0%
!!! AAATTGGTAAGATTTTGATT+TGG + Chr6:98542366-98542385 MsG0680035075.01.T01:intron 20.0%
!!! AAGGATGAATTTTCAAATTT+GGG + Chr6:98545253-98545272 MsG0680035075.01.T01:intron 20.0%
!!! AATAATGTGTTTTGGATAAA+AGG + Chr6:98545632-98545651 MsG0680035075.01.T01:three_prime_UTR 20.0%
!!! AATGATCGATGTTTTAAAAT+TGG + Chr6:98543437-98543456 MsG0680035075.01.T01:intron 20.0%
!!! AATTAGTTCTGCTTTTAATA+TGG + Chr6:98542012-98542031 MsG0680035075.01.T01:intron 20.0%
!!! ACATATTTTAGAGCTTAAAT+TGG - Chr6:98544677-98544696 None:intergenic 20.0%
!!! ATGTTGGTTTTTGTAAAATT+TGG + Chr6:98541959-98541978 MsG0680035075.01.T01:intron 20.0%
!!! ATTTATATGTGATACTTTTC+AGG + Chr6:98545059-98545078 MsG0680035075.01.T01:intron 20.0%
!!! GTAAAAATGTGTGTTTTTAT+TGG + Chr6:98541860-98541879 MsG0680035075.01.T01:intron 20.0%
!!! TAAAAACACACATTTTTACA+TGG - Chr6:98541859-98541878 None:intergenic 20.0%
!!! TAAGGATGAATTTTCAAATT+TGG + Chr6:98545252-98545271 MsG0680035075.01.T01:intron 20.0%
!!! TATTTAATGATTTGTAGGTA+TGG + Chr6:98545293-98545312 MsG0680035075.01.T01:intron 20.0%
!!! TCTAAATACTAACATAGTTT+TGG + Chr6:98543179-98543198 MsG0680035075.01.T01:intron 20.0%
!!! TGTATTGATGAAATGATTTA+GGG + Chr6:98541897-98541916 MsG0680035075.01.T01:intron 20.0%
!!! TTCAATCTTCTTCTTTTTTA+GGG + Chr6:98542111-98542130 MsG0680035075.01.T01:intron 20.0%
!!! TTGTATTGATGAAATGATTT+AGG + Chr6:98541896-98541915 MsG0680035075.01.T01:intron 20.0%
!!! TTTCAATCTTCTTCTTTTTT+AGG + Chr6:98542110-98542129 MsG0680035075.01.T01:intron 20.0%
!!! TTTTTAGTCCTGTAAAATTA+CGG - Chr6:98543377-98543396 None:intergenic 20.0%
! AAAACAATGACTAAAATCGA+CGG - Chr6:98544734-98544753 None:intergenic 25.0%
! AACAAATTGTATAAACCACT+TGG - Chr6:98543895-98543914 None:intergenic 25.0%
! AAGATATAGAGAGAAATATC+AGG + Chr6:98543695-98543714 MsG0680035075.01.T01:CDS 25.0%
! AATTCATCCTTACAAAAAGA+AGG - Chr6:98545244-98545263 None:intergenic 25.0%
! AGAACTATGCAAAATATTGT+TGG + Chr6:98544410-98544429 MsG0680035075.01.T01:CDS 25.0%
! ATTGATACCAACAAAATCAA+TGG - Chr6:98544486-98544505 None:intergenic 25.0%
! CAAATCATTAATGTACATCA+AGG + Chr6:98545122-98545141 MsG0680035075.01.T01:CDS 25.0%
! CTATGTTAGTATTTAGACTA+TGG - Chr6:98543176-98543195 None:intergenic 25.0%
! GAACTATGCAAAATATTGTT+GGG + Chr6:98544411-98544430 MsG0680035075.01.T01:CDS 25.0%
! GTTTCTTAAGATTCTAATTG+TGG + Chr6:98545604-98545623 MsG0680035075.01.T01:three_prime_UTR 25.0%
! TAAATGTAAGGTTCATACTA+AGG - Chr6:98542770-98542789 None:intergenic 25.0%
! TAGTTAGAGACTAAATTGAA+TGG - Chr6:98544645-98544664 None:intergenic 25.0%
! TATTGGATGGTAAAAATTGT+TGG + Chr6:98544062-98544081 MsG0680035075.01.T01:intron 25.0%
! TGAATTACTTGGAAAAATTC+TGG - Chr6:98542978-98542997 None:intergenic 25.0%
! TTCAATCATATTCTGTCTAT+TGG - Chr6:98542287-98542306 None:intergenic 25.0%
! TTCTTGTTAGTTCAGTTAAT+GGG + Chr6:98541579-98541598 MsG0680035075.01.T01:CDS 25.0%
! TTTCAAATTATTAACGGTGT+CGG + Chr6:98544261-98544280 MsG0680035075.01.T01:intron 25.0%
!! ACAAAAACCAACATACTTTT+TGG - Chr6:98541953-98541972 None:intergenic 25.0%
!! ACAATATTTTGCATAGTTCT+TGG - Chr6:98544410-98544429 None:intergenic 25.0%
!! CTCAAATATTTTCAATTTGC+AGG + Chr6:98542892-98542911 MsG0680035075.01.T01:intron 25.0%
!! CTCAACAATTTACTTCTTTT+TGG - Chr6:98545574-98545593 None:intergenic 25.0%
!! GAATTTTGTTGGATTTTGTT+TGG + Chr6:98543977-98543996 MsG0680035075.01.T01:CDS 25.0%
!! GTCCAAAAAATACTTCTTTT+TGG + Chr6:98542517-98542536 MsG0680035075.01.T01:intron 25.0%
!!! AAAAGAAGTATTTTTTGGAC+TGG - Chr6:98542517-98542536 None:intergenic 25.0%
!!! AGCTAAATTTTGATCAATAC+CGG + Chr6:98542936-98542955 MsG0680035075.01.T01:CDS 25.0%
!!! GACCAAAAAGAAGTATTTTT+TGG - Chr6:98542522-98542541 None:intergenic 25.0%
!!! GATTTTTGTTTCAAGACATA+TGG + Chr6:98543486-98543505 MsG0680035075.01.T01:CDS 25.0%
!!! GTTTTGATGTTTTTATCTTG+TGG + Chr6:98543912-98543931 MsG0680035075.01.T01:intron 25.0%
!!! GTTTTTTAGGAAAAGCAAAA+GGG + Chr6:98543946-98543965 MsG0680035075.01.T01:intron 25.0%
!!! TCAATCTTCTTCTTTTTTAG+GGG + Chr6:98542112-98542131 MsG0680035075.01.T01:intron 25.0%
!!! TTTTGATTCTTGTTTAGATC+AGG + Chr6:98543729-98543748 MsG0680035075.01.T01:intron 25.0%
AAATTGTGAGCTACAGTATA+AGG - Chr6:98543648-98543667 None:intergenic 30.0%
AACATTGAAGATGCTAAGAA+TGG + Chr6:98544916-98544935 MsG0680035075.01.T01:intron 30.0%
AAGAAAATCAATGTCAGTCA+TGG - Chr6:98544892-98544911 None:intergenic 30.0%
ACTTGTTTCAAACTTACTCT+TGG - Chr6:98544955-98544974 None:intergenic 30.0%
ATGAAAACATCCCAAATACT+AGG - Chr6:98541737-98541756 None:intergenic 30.0%
CAGGTATATGCTTAGATTAT+CGG + Chr6:98543748-98543767 MsG0680035075.01.T01:intron 30.0%
CATAAGAATTGTATGATGCA+CGG + Chr6:98544141-98544160 MsG0680035075.01.T01:intron 30.0%
CCTATGTACTTATCTGAAAA+TGG + Chr6:98545162-98545181 MsG0680035075.01.T01:CDS 30.0%
CTAAAGAAAGCTATAGATGA+TGG + Chr6:98545396-98545415 MsG0680035075.01.T01:CDS 30.0%
GTTCTTGTTAGTTCAGTTAA+TGG + Chr6:98541578-98541597 MsG0680035075.01.T01:CDS 30.0%
TAATGGTAGAGATTTGCATA+AGG - Chr6:98543273-98543292 None:intergenic 30.0%
TCTTGTTAGTTCAGTTAATG+GGG + Chr6:98541580-98541599 MsG0680035075.01.T01:CDS 30.0%
TGAAAACATCCCAAATACTA+GGG - Chr6:98541736-98541755 None:intergenic 30.0%
TGTTTGGCAAGTTAAATGTA+AGG - Chr6:98542782-98542801 None:intergenic 30.0%
TTAGAGACTAAATTGAATGG+TGG - Chr6:98544642-98544661 None:intergenic 30.0%
TTAGTACTTACACAACGTTA+CGG - Chr6:98543341-98543360 None:intergenic 30.0%
TTGGAAAATGTTACATTACC+CGG - Chr6:98545324-98545343 None:intergenic 30.0%
TTTCAGATAAGTACATAGGT+GGG - Chr6:98545161-98545180 None:intergenic 30.0%
! AAGGTTCATACTAAGGATTT+TGG - Chr6:98542763-98542782 None:intergenic 30.0%
! ACTAGTATTGTCTTTGAAGA+TGG + Chr6:98541496-98541515 MsG0680035075.01.T01:exon 30.0%
! AGTAGAGATGTTTTTCCTAA+AGG + Chr6:98541644-98541663 MsG0680035075.01.T01:CDS 30.0%
! ATTTGAAACTTTGATGCAGA+TGG + Chr6:98543066-98543085 MsG0680035075.01.T01:intron 30.0%
! CCATTTTCAGATAAGTACAT+AGG - Chr6:98545165-98545184 None:intergenic 30.0%
! CTAATGTGTTTAAGCTCTAA+AGG - Chr6:98542701-98542720 None:intergenic 30.0%
! GATGTTTTCATCAAAAAACC+TGG + Chr6:98541746-98541765 MsG0680035075.01.T01:CDS 30.0%
! GGTAATGTAACATTTTCCAA+GGG + Chr6:98545324-98545343 MsG0680035075.01.T01:CDS 30.0%
! GTAGAGATGTTTTTCCTAAA+GGG + Chr6:98541645-98541664 MsG0680035075.01.T01:CDS 30.0%
! GTCTTAACCTTCTTTTTGTA+AGG + Chr6:98545234-98545253 MsG0680035075.01.T01:intron 30.0%
! TTATGGTGTTTAATTTCCAC+AGG + Chr6:98544354-98544373 MsG0680035075.01.T01:intron 30.0%
! TTTTCAGATAAGTACATAGG+TGG - Chr6:98545162-98545181 None:intergenic 30.0%
!! TGGTAGTGAATAATGTGTTT+TGG + Chr6:98545624-98545643 MsG0680035075.01.T01:three_prime_UTR 30.0%
!!! AACCAACATACTTTTTGGTT+TGG - Chr6:98541948-98541967 None:intergenic 30.0%
!!! GGTTTTTTAGGAAAAGCAAA+AGG + Chr6:98543945-98543964 MsG0680035075.01.T01:intron 30.0%
!!! TCGATGTTTTAAAATTGGAC+AGG + Chr6:98543442-98543461 MsG0680035075.01.T01:intron 30.0%
AACCAATATGCAGACATCTT+AGG - Chr6:98545537-98545556 None:intergenic 35.0%
AACTTCTGCTTATCAAGTAG+AGG + Chr6:98541685-98541704 MsG0680035075.01.T01:CDS 35.0%
AAGATGTGTCATAGTGACTT+TGG + Chr6:98543787-98543806 MsG0680035075.01.T01:intron 35.0%
AATTGTACAGCTGGAAATTC+AGG + Chr6:98543615-98543634 MsG0680035075.01.T01:CDS 35.0%
ACAGGAATTGTCGCAAATAA+TGG + Chr6:98542628-98542647 MsG0680035075.01.T01:intron 35.0%
ACCAATATGCAGACATCTTA+GGG - Chr6:98545536-98545555 None:intergenic 35.0%
ACTGGCAAAGTAAATTGGAA+AGG + Chr6:98543090-98543109 MsG0680035075.01.T01:CDS 35.0%
ACTTCTGCTTATCAAGTAGA+GGG + Chr6:98541686-98541705 MsG0680035075.01.T01:CDS 35.0%
AGAGCTAGAGACTTTCATAT+TGG + Chr6:98544045-98544064 MsG0680035075.01.T01:CDS 35.0%
ATCGATTACTTGCTCGAAAA+GGG + Chr6:98543135-98543154 MsG0680035075.01.T01:CDS 35.0%
ATGGAACTGGCAAAGTAAAT+TGG + Chr6:98543085-98543104 MsG0680035075.01.T01:CDS 35.0%
ATGTGTTTGGATATCATGCT+TGG + Chr6:98545424-98545443 MsG0680035075.01.T01:CDS 35.0%
ATTTGTAGGTATGGATGATC+CGG + Chr6:98545302-98545321 MsG0680035075.01.T01:intron 35.0%
CGTGCATCATACAATTCTTA+TGG - Chr6:98544143-98544162 None:intergenic 35.0%
CTAGAGACTTTCATATTGGA+TGG + Chr6:98544049-98544068 MsG0680035075.01.T01:CDS 35.0%
CTGTAAAATTACGGCCATAA+AGG - Chr6:98543368-98543387 None:intergenic 35.0%
GAAACTTCAACGAAATCACA+TGG + Chr6:98543825-98543844 MsG0680035075.01.T01:intron 35.0%
GAATATGGAAATTGTACAGC+TGG + Chr6:98543606-98543625 MsG0680035075.01.T01:CDS 35.0%
GACTTGATTAATGCAAGTCT+TGG + Chr6:98545685-98545704 MsG0680035075.01.T01:three_prime_UTR 35.0%
TACATTGTAGAGACCAAAAG+AGG - Chr6:98545658-98545677 None:intergenic 35.0%
TATTTCAACTCGAGAGCTAA+AGG - Chr6:98543303-98543322 None:intergenic 35.0%
TGGATACTCACCATAAACAA+GGG - Chr6:98544390-98544409 None:intergenic 35.0%
TGTGTTAGTGCTTCAATCAT+AGG - Chr6:98545752-98545771 None:intergenic 35.0%
TTAGGTAAGAAACACAAACC+AGG - Chr6:98541767-98541786 None:intergenic 35.0%
TTGGATACTCACCATAAACA+AGG - Chr6:98544391-98544410 None:intergenic 35.0%
TTGGCTATACAATGTACCAT+GGG + Chr6:98545092-98545111 MsG0680035075.01.T01:CDS 35.0%
TTTAGGAAAAGCAAAAGGGT+AGG + Chr6:98543950-98543969 MsG0680035075.01.T01:intron 35.0%
TTTCCTAAAGGGTTTGTGTT+TGG + Chr6:98541656-98541675 MsG0680035075.01.T01:CDS 35.0%
! AATGATTTGTATAAGCCCCA+TGG - Chr6:98545111-98545130 None:intergenic 35.0%
! ATCAATCGGATTGGAATGTA+GGG + Chr6:98544564-98544583 MsG0680035075.01.T01:intron 35.0%
! ATTCTTTTGAACACCTTCCA+GGG - Chr6:98543590-98543609 None:intergenic 35.0%
! ATTGGACAGGAAAGATTTTG+CGG + Chr6:98543455-98543474 MsG0680035075.01.T01:intron 35.0%
! CACCAAACCAAAAAGTATGT+TGG + Chr6:98541943-98541962 MsG0680035075.01.T01:intron 35.0%
! CTTTATGGCCGTAATTTTAC+AGG + Chr6:98543366-98543385 MsG0680035075.01.T01:intron 35.0%
! GGGTAATGTAACATTTTCCA+AGG + Chr6:98545323-98545342 MsG0680035075.01.T01:CDS 35.0%
! TATCAATCGGATTGGAATGT+AGG + Chr6:98544563-98544582 MsG0680035075.01.T01:intron 35.0%
! TATTCTTTTGAACACCTTCC+AGG - Chr6:98543591-98543610 None:intergenic 35.0%
! TTATCTTGTGGTGATGATTG+TGG + Chr6:98543924-98543943 MsG0680035075.01.T01:intron 35.0%
! TTCATTCATCCCCTTGTTTA+TGG + Chr6:98544377-98544396 MsG0680035075.01.T01:CDS 35.0%
! TTTGGATAAAAGGCCTCTTT+TGG + Chr6:98545642-98545661 MsG0680035075.01.T01:three_prime_UTR 35.0%
!! CTTTTCAGGCATATTCATCT+TGG + Chr6:98545073-98545092 MsG0680035075.01.T01:intron 35.0%
!! GGAAGGTGTTCAAAAGAATA+TGG + Chr6:98543591-98543610 MsG0680035075.01.T01:CDS 35.0%
!!! ACTTTTGGTTTTGCTTGATG+AGG - Chr6:98544536-98544555 None:intergenic 35.0%
!!! GGTGATGATTGTGGTTTTTT+AGG + Chr6:98543933-98543952 MsG0680035075.01.T01:intron 35.0%
AAAAGTCCCTGGCTATCAAT+CGG + Chr6:98544550-98544569 MsG0680035075.01.T01:CDS 40.0%
AAACTTACTCTTGGTCCAAC+AGG - Chr6:98544946-98544965 None:intergenic 40.0%
AACTTTGATGCAGATGGAAC+TGG + Chr6:98543072-98543091 MsG0680035075.01.T01:intron 40.0%
ACTCCAAACACAAACCCTTT+AGG - Chr6:98541662-98541681 None:intergenic 40.0%
ACTTCCTCCTTAGTGAACTT+TGG - Chr6:98544446-98544465 None:intergenic 40.0%
ATGCCTGCAACATAGGTTTA+AGG - Chr6:98543246-98543265 None:intergenic 40.0%
ATTGTCGCAAATAATGGCAC+AGG + Chr6:98542634-98542653 MsG0680035075.01.T01:CDS 40.0%
CCAATATGCAGACATCTTAG+GGG - Chr6:98545535-98545554 None:intergenic 40.0%
CTTCCTCCTTAGTGAACTTT+GGG - Chr6:98544445-98544464 None:intergenic 40.0%
CTTGGCTATACAATGTACCA+TGG + Chr6:98545091-98545110 MsG0680035075.01.T01:CDS 40.0%
GAAAAGCAAAAGGGTAGGAT+TGG + Chr6:98543955-98543974 MsG0680035075.01.T01:CDS 40.0%
GAAACAGTGCATTTGGATAC+TGG + Chr6:98541614-98541633 MsG0680035075.01.T01:CDS 40.0%
GAGCTAAAGGAAGGTCATAA+TGG - Chr6:98543290-98543309 None:intergenic 40.0%
GAGGAAGTGAATCTTGTGAA+GGG + Chr6:98544458-98544477 MsG0680035075.01.T01:CDS 40.0%
GATCGATTACTTGCTCGAAA+AGG + Chr6:98543134-98543153 MsG0680035075.01.T01:CDS 40.0%
GCAGGAAGATATAGATCTCA+TGG + Chr6:98542910-98542929 MsG0680035075.01.T01:intron 40.0%
GGATACTCACCATAAACAAG+GGG - Chr6:98544389-98544408 None:intergenic 40.0%
GTATCCAAATGCACTGTTTC+AGG - Chr6:98541614-98541633 None:intergenic 40.0%
GTTCCTTAAACCTATGTTGC+AGG + Chr6:98543240-98543259 MsG0680035075.01.T01:intron 40.0%
GTTTGTGTCACAGTTATGTC+TGG - Chr6:98545779-98545798 None:intergenic 40.0%
TCAGCCTTTGATCTTGTAAG+AGG - Chr6:98544009-98544028 None:intergenic 40.0%
TGAGCCTCTTACAAGATCAA+AGG + Chr6:98544002-98544021 MsG0680035075.01.T01:CDS 40.0%
TGCTTATCAAGTAGAGGGTA+TGG + Chr6:98541691-98541710 MsG0680035075.01.T01:CDS 40.0%
TGGCTATACAATGTACCATG+GGG + Chr6:98545093-98545112 MsG0680035075.01.T01:CDS 40.0%
TTAGGGTACACATCAAGGTT+TGG + Chr6:98545474-98545493 MsG0680035075.01.T01:CDS 40.0%
TTTGTAGGTATGGATGATCC+GGG + Chr6:98545303-98545322 MsG0680035075.01.T01:intron 40.0%
! AGTCTCTTTTTCCGACAAAC+AGG - Chr6:98542396-98542415 None:intergenic 40.0%
! GATTTTCATCATGCACCAAG+TGG + Chr6:98543877-98543896 MsG0680035075.01.T01:intron 40.0%
! GGGTAGGATTGGAATTTTGT+TGG + Chr6:98543966-98543985 MsG0680035075.01.T01:CDS 40.0%
! GTCTTTGAAGATGGTGATGT+TGG + Chr6:98541505-98541524 MsG0680035075.01.T01:exon 40.0%
! TTCTTTTGAACACCTTCCAG+GGG - Chr6:98543589-98543608 None:intergenic 40.0%
!! AATACCGGTTCTCAATCTCA+TGG + Chr6:98542951-98542970 MsG0680035075.01.T01:CDS 40.0%
!! GATGATGGAGCAAATGTGTT+TGG + Chr6:98545411-98545430 MsG0680035075.01.T01:CDS 40.0%
!! GCTCTCGAGTTGAAATACAA+CGG + Chr6:98543306-98543325 MsG0680035075.01.T01:CDS 40.0%
!!! AAGGGCTCCATTGATTTTGT+TGG + Chr6:98544476-98544495 MsG0680035075.01.T01:CDS 40.0%
ACAGTGCATTTGGATACTGG+AGG + Chr6:98541617-98541636 MsG0680035075.01.T01:CDS 45.0%
ACTCCCAAAGTTCACTAAGG+AGG + Chr6:98544439-98544458 MsG0680035075.01.T01:CDS 45.0%
AGGAGTAATGCCTGCAACAT+AGG - Chr6:98543253-98543272 None:intergenic 45.0%
AGTGCCTGAAACAGTGCATT+TGG + Chr6:98541607-98541626 MsG0680035075.01.T01:CDS 45.0%
ATGGAGACAGAGTGAAGAAC+TGG + Chr6:98543505-98543524 MsG0680035075.01.T01:CDS 45.0%
CAAGCAAAACCAAAAGTCCC+TGG + Chr6:98544539-98544558 MsG0680035075.01.T01:CDS 45.0%
CAGACTCCCAAAGTTCACTA+AGG + Chr6:98544436-98544455 MsG0680035075.01.T01:CDS 45.0%
CAGTGCATTTGGATACTGGA+GGG + Chr6:98541618-98541637 MsG0680035075.01.T01:CDS 45.0%
CCCCTAAGATGTCTGCATAT+TGG + Chr6:98545532-98545551 MsG0680035075.01.T01:CDS 45.0%
GCGTTGTTCTTCGTGTACAA+CGG + Chr6:98544109-98544128 MsG0680035075.01.T01:intron 45.0%
GCTGCTCTTGGCTATGATAA+TGG + Chr6:98543555-98543574 MsG0680035075.01.T01:CDS 45.0%
GGAGATTAGGGTACACATCA+AGG + Chr6:98545469-98545488 MsG0680035075.01.T01:CDS 45.0%
GGAGGAAGTGAATCTTGTGA+AGG + Chr6:98544457-98544476 MsG0680035075.01.T01:CDS 45.0%
TCAACTCGAGAGCTAAAGGA+AGG - Chr6:98543299-98543318 None:intergenic 45.0%
TGGACCATGAGATTGAGAAC+CGG - Chr6:98542958-98542977 None:intergenic 45.0%
TGTTGTGTCATGCAAACCCT+TGG - Chr6:98545343-98545362 None:intergenic 45.0%
! GATTTGGTCTGCCTGTTTGT+CGG + Chr6:98542382-98542401 MsG0680035075.01.T01:intron 45.0%
! TCCAATCCGATTGATAGCCA+GGG - Chr6:98544559-98544578 None:intergenic 45.0%
! TTCCAATCCGATTGATAGCC+AGG - Chr6:98544560-98544579 None:intergenic 45.0%
!! GATTGATAGCCAGGGACTTT+TGG - Chr6:98544551-98544570 None:intergenic 45.0%
!!! GATAATGGCTTTTTTGCCCC+TGG + Chr6:98543570-98543589 MsG0680035075.01.T01:CDS 45.0%
!! TATCAAATAATAATTTAAAA+AGG + Chr6:98542196-98542215 MsG0680035075.01.T01:intron 5.0%
!!! TTTTTTTACAATAATTTTTT+TGG + Chr6:98542549-98542568 MsG0680035075.01.T01:intron 5.0%
ACACGACACGTGTCTAACAC+AGG - Chr6:98544190-98544209 None:intergenic 50.0%
CAAGGGGATGAATGAACCTG+TGG - Chr6:98544373-98544392 None:intergenic 50.0%
CCAAGAGCAGCAACAACTCT+TGG - Chr6:98543546-98543565 None:intergenic 50.0%
CCAAGAGTTGTTGCTGCTCT+TGG + Chr6:98543543-98543562 MsG0680035075.01.T01:CDS 50.0%
GTCAGTGTTTGTGTCGTGTC+CGG + Chr6:98544287-98544306 MsG0680035075.01.T01:intron 50.0%
GTGTGTGTGTGTGTGTGTGT+GGG + Chr6:98542846-98542865 MsG0680035075.01.T01:intron 50.0%
TATGATGCACGGACACTCCT+CGG + Chr6:98544152-98544171 MsG0680035075.01.T01:intron 50.0%
TCCCTGGCTATCAATCGGAT+TGG + Chr6:98544555-98544574 MsG0680035075.01.T01:CDS 50.0%
TGAAGCACGGACATGAACAC+CGG - Chr6:98544309-98544328 None:intergenic 50.0%
TGTGTGTGTGTGTGTGTGTG+GGG + Chr6:98542845-98542864 MsG0680035075.01.T01:intron 50.0%
TGTGTGTGTGTGTGTGTGTG+TGG + Chr6:98542845-98542864 MsG0680035075.01.T01:intron 50.0%
! AGAGGGTATGGCTAGCAAAG+AGG + Chr6:98541703-98541722 MsG0680035075.01.T01:CDS 50.0%
! GAGGGTATGGCTAGCAAAGA+GGG + Chr6:98541704-98541723 MsG0680035075.01.T01:CDS 50.0%
! GCTAAGAATGGAGTGCCTGT+TGG + Chr6:98544928-98544947 MsG0680035075.01.T01:intron 50.0%
!!! ATGGCTTTTTTGCCCCTGGA+AGG + Chr6:98543574-98543593 MsG0680035075.01.T01:CDS 50.0%
AGGGTCGTGGCCCTAGTATT+TGG + Chr6:98541723-98541742 MsG0680035075.01.T01:CDS 55.0%
ATGGCTAGCAAAGAGGGTCG+TGG + Chr6:98541710-98541729 MsG0680035075.01.T01:CDS 55.0%
GGGTCGTGGCCCTAGTATTT+GGG + Chr6:98541724-98541743 MsG0680035075.01.T01:CDS 55.0%
GTGTGTGTGTGTGTGTGTGG+GGG + Chr6:98542852-98542871 MsG0680035075.01.T01:intron 55.0%
TGTGTGTGTGTGTGTGTGGG+GGG + Chr6:98542853-98542872 MsG0680035075.01.T01:intron 55.0%
! ACAGGAGCACACCTAATCCG+AGG - Chr6:98544172-98544191 None:intergenic 55.0%
GCACGGACACTCCTCGGATT+AGG + Chr6:98544158-98544177 MsG0680035075.01.T01:intron 60.0%
GTGTGTGTGTGTGTGTGGGG+GGG + Chr6:98542854-98542873 MsG0680035075.01.T01:intron 60.0%
TGTGTGTGTGTGTGTGGGGG+GGG + Chr6:98542855-98542874 MsG0680035075.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 98541462 98545817 98541462 ID=MsG0680035075.01;Name=MsG0680035075.01
Chr6 mRNA 98541462 98545817 98541462 ID=MsG0680035075.01.T01;Parent=MsG0680035075.01;Name=MsG0680035075.01.T01;_AED=0.30;_eAED=0.30;_QI=53|0.88|0.9|1|1|1|10|233|499
Chr6 exon 98541462 98541767 98541462 ID=MsG0680035075.01.T01:exon:7620;Parent=MsG0680035075.01.T01
Chr6 exon 98542632 98542690 98542632 ID=MsG0680035075.01.T01:exon:7621;Parent=MsG0680035075.01.T01
Chr6 exon 98542914 98542989 98542914 ID=MsG0680035075.01.T01:exon:7622;Parent=MsG0680035075.01.T01
Chr6 exon 98543085 98543156 98543085 ID=MsG0680035075.01.T01:exon:7623;Parent=MsG0680035075.01.T01
Chr6 exon 98543262 98543349 98543262 ID=MsG0680035075.01.T01:exon:7624;Parent=MsG0680035075.01.T01
Chr6 exon 98543464 98543716 98543464 ID=MsG0680035075.01.T01:exon:7625;Parent=MsG0680035075.01.T01
Chr6 exon 98543955 98544070 98543955 ID=MsG0680035075.01.T01:exon:7626;Parent=MsG0680035075.01.T01
Chr6 exon 98544376 98544580 98544376 ID=MsG0680035075.01.T01:exon:7627;Parent=MsG0680035075.01.T01
Chr6 exon 98545081 98545183 98545081 ID=MsG0680035075.01.T01:exon:7628;Parent=MsG0680035075.01.T01
Chr6 exon 98545310 98545817 98545310 ID=MsG0680035075.01.T01:exon:7629;Parent=MsG0680035075.01.T01
Chr6 five_prime_UTR 98541462 98541514 98541462 ID=MsG0680035075.01.T01:five_prime_utr;Parent=MsG0680035075.01.T01
Chr6 CDS 98541515 98541767 98541515 ID=MsG0680035075.01.T01:cds;Parent=MsG0680035075.01.T01
Chr6 CDS 98542632 98542690 98542632 ID=MsG0680035075.01.T01:cds;Parent=MsG0680035075.01.T01
Chr6 CDS 98542914 98542989 98542914 ID=MsG0680035075.01.T01:cds;Parent=MsG0680035075.01.T01
Chr6 CDS 98543085 98543156 98543085 ID=MsG0680035075.01.T01:cds;Parent=MsG0680035075.01.T01
Chr6 CDS 98543262 98543349 98543262 ID=MsG0680035075.01.T01:cds;Parent=MsG0680035075.01.T01
Chr6 CDS 98543464 98543716 98543464 ID=MsG0680035075.01.T01:cds;Parent=MsG0680035075.01.T01
Chr6 CDS 98543955 98544070 98543955 ID=MsG0680035075.01.T01:cds;Parent=MsG0680035075.01.T01
Chr6 CDS 98544376 98544580 98544376 ID=MsG0680035075.01.T01:cds;Parent=MsG0680035075.01.T01
Chr6 CDS 98545081 98545183 98545081 ID=MsG0680035075.01.T01:cds;Parent=MsG0680035075.01.T01
Chr6 CDS 98545310 98545584 98545310 ID=MsG0680035075.01.T01:cds;Parent=MsG0680035075.01.T01
Chr6 three_prime_UTR 98545585 98545817 98545585 ID=MsG0680035075.01.T01:three_prime_utr;Parent=MsG0680035075.01.T01
Gene Sequence

>MsG0680035075.01.T01

ATGGTGATGTTGGATTCACAACAACATCAATGTTTCTATTACATGTTTTTCTTTTTCTTAGTTGTTCTTGTTAGTTCAGTTAATGGGGATGTAGTGCCTGAAACAGTGCATTTGGATACTGGAGGGTTGAGTAGAGATGTTTTTCCTAAAGGGTTTGTGTTTGGAGTTGCAACTTCTGCTTATCAAGTAGAGGGTATGGCTAGCAAAGAGGGTCGTGGCCCTAGTATTTGGGATGTTTTCATCAAAAAACCTGGAATTGTCGCAAATAATGGCACAGGAGAAGTTTCTGTTGATCAATATCATCGCTACAAAGAAGATATAGATCTCATGGCAAAGCTAAATTTTGATCAATACCGGTTCTCAATCTCATGGTCCAGAATTTTTCCAAATGGAACTGGCAAAGTAAATTGGAAAGGTGTAGCATACTACAACAGATTGATCGATTACTTGCTCGAAAAGGGCATTACTCCTTATGCAAATCTCTACCATTATGACCTTCCTTTAGCTCTCGAGTTGAAATACAACGGTTTATTGAGCCGTAACGTTGTGAAAGATTTTGCGGATTATGCAGATTTTTGTTTCAAGACATATGGAGACAGAGTGAAGAACTGGATGACTTTCAATGAACCAAGAGTTGTTGCTGCTCTTGGCTATGATAATGGCTTTTTTGCCCCTGGAAGGTGTTCAAAAGAATATGGAAATTGTACAGCTGGAAATTCAGGAACTGAGCCTTATACTGTAGCTCACAATTTGATATTGTCACATGCTGCTGCTGCTCAAAGATATAGAGAGAAATATCAGGAAAAGCAAAAGGGTAGGATTGGAATTTTGTTGGATTTTGTTTGGTATGAGCCTCTTACAAGATCAAAGGCTGATAACTATGCTGCTCAAAGAGCTAGAGACTTTCATATTGGATGGTTCATTCATCCCCTTGTTTATGGTGAGTATCCAAGAACTATGCAAAATATTGTTGGGAACAGACTCCCAAAGTTCACTAAGGAGGAAGTGAATCTTGTGAAGGGCTCCATTGATTTTGTTGGTATCAATCAATATACTACTTATTACATGTATGATCCTCATCAAGCAAAACCAAAAGTCCCTGGCTATCAATCGGATTGGAATGCATATTCATCTTGGCTATACAATGTACCATGGGGCTTATACAAATCATTAATGTACATCAAGGAGCATTATAAAAACCCACCTATGTACTTATCTGAAAATGGTATGGATGATCCGGGTAATGTAACATTTTCCAAGGGTTTGCATGACACAACAAGAATAAACTATTACAAAGGCTATTTGACTCAACTAAAGAAAGCTATAGATGATGGAGCAAATGTGTTTGGATATCATGCTTGGTCATTGCTTGATAACTTTGAATGGAGATTAGGGTACACATCAAGGTTTGGTATTGTCTATGTTGACTTCAAAACTCTCAAGAGAACCCCTAAGATGTCTGCATATTGGTTCAAGCAGCTACTTACCAAAAAGAAGTAA

Protein sequence

>MsG0680035075.01.T01

MVMLDSQQHQCFYYMFFFFLVVLVSSVNGDVVPETVHLDTGGLSRDVFPKGFVFGVATSAYQVEGMASKEGRGPSIWDVFIKKPGIVANNGTGEVSVDQYHRYKEDIDLMAKLNFDQYRFSISWSRIFPNGTGKVNWKGVAYYNRLIDYLLEKGITPYANLYHYDLPLALELKYNGLLSRNVVKDFADYADFCFKTYGDRVKNWMTFNEPRVVAALGYDNGFFAPGRCSKEYGNCTAGNSGTEPYTVAHNLILSHAAAAQRYREKYQEKQKGRIGILLDFVWYEPLTRSKADNYAAQRARDFHIGWFIHPLVYGEYPRTMQNIVGNRLPKFTKEEVNLVKGSIDFVGINQYTTYYMYDPHQAKPKVPGYQSDWNAYSSWLYNVPWGLYKSLMYIKEHYKNPPMYLSENGMDDPGNVTFSKGLHDTTRINYYKGYLTQLKKAIDDGANVFGYHAWSLLDNFEWRLGYTSRFGIVYVDFKTLKRTPKMSAYWFKQLLTKKK*