Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015796.01.T02 | XP_003601242.1 | 96.063 | 127 | 5 | 0 | 1 | 127 | 1 | 127 | 1.52E-86 | 258 |
| MsG0380015796.01.T01 | XP_003601242.1 | 96.063 | 127 | 5 | 0 | 1 | 127 | 1 | 127 | 1.52E-86 | 258 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015796.01.T01 | Q8L8T2 | 65.354 | 127 | 42 | 1 | 1 | 127 | 1 | 125 | 2.15E-58 | 179 |
| MsG0380015796.01.T02 | Q8L8T2 | 65.354 | 127 | 42 | 1 | 1 | 127 | 1 | 125 | 2.15E-58 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015796.01.T01 | G7J5D7 | 96.063 | 127 | 5 | 0 | 1 | 127 | 1 | 127 | 7.25e-87 | 258 |
| MsG0380015796.01.T02 | G7J5D7 | 96.063 | 127 | 5 | 0 | 1 | 127 | 1 | 127 | 7.25e-87 | 258 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005264.01 | MsG0380015796.01 | 0.802803 | 4.717069e-49 | 2.332330e-46 |
| MsG0380015796.01 | MsG0680031053.01 | 0.837638 | 4.617993e-57 | 6.036431e-54 |
| MsG0380015796.01 | MsG0880042832.01 | 0.812324 | 4.489566e-51 | 2.845854e-48 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015796.01.T02 | MTR_3g077560 | 96.063 | 127 | 5 | 0 | 1 | 127 | 1 | 127 | 1.84e-90 | 258 |
| MsG0380015796.01.T02 | MTR_3g077570 | 81.667 | 120 | 19 | 1 | 1 | 120 | 1 | 117 | 2.25e-70 | 207 |
| MsG0380015796.01.T02 | MTR_7g035245 | 58.095 | 105 | 44 | 0 | 21 | 125 | 3 | 107 | 2.14e-43 | 138 |
| MsG0380015796.01.T02 | MTR_1g069255 | 48.000 | 100 | 49 | 2 | 25 | 123 | 87 | 184 | 5.58e-26 | 96.7 |
| MsG0380015796.01.T02 | MTR_2g038560 | 42.000 | 100 | 51 | 1 | 15 | 114 | 29 | 121 | 1.25e-22 | 86.3 |
| MsG0380015796.01.T02 | MTR_2g038560 | 42.000 | 100 | 51 | 1 | 15 | 114 | 73 | 165 | 1.73e-22 | 87.4 |
| MsG0380015796.01.T02 | MTR_2g038560 | 42.000 | 100 | 51 | 1 | 15 | 114 | 70 | 162 | 1.86e-22 | 87.0 |
| MsG0380015796.01.T02 | MTR_5g021090 | 42.353 | 85 | 49 | 0 | 30 | 114 | 42 | 126 | 1.66e-19 | 78.2 |
| MsG0380015796.01.T02 | MTR_2g019900 | 38.000 | 100 | 62 | 0 | 21 | 120 | 1 | 100 | 1.74e-18 | 75.1 |
| MsG0380015796.01.T02 | MTR_7g022690 | 39.423 | 104 | 62 | 1 | 18 | 120 | 27 | 130 | 6.22e-18 | 74.3 |
| MsG0380015796.01.T02 | MTR_7g022710 | 40.385 | 104 | 61 | 1 | 18 | 120 | 27 | 130 | 6.78e-18 | 74.3 |
| MsG0380015796.01.T02 | MTR_1g088905 | 34.000 | 100 | 66 | 0 | 21 | 120 | 1 | 100 | 6.96e-18 | 73.6 |
| MsG0380015796.01.T02 | MTR_7g022550 | 39.423 | 104 | 62 | 1 | 18 | 120 | 27 | 130 | 1.35e-17 | 73.6 |
| MsG0380015796.01.T02 | MTR_7g108250 | 34.000 | 100 | 66 | 0 | 21 | 120 | 1 | 100 | 1.25e-16 | 70.1 |
| MsG0380015796.01.T02 | MTR_7g108220 | 37.624 | 101 | 62 | 1 | 21 | 120 | 1 | 101 | 5.41e-16 | 68.6 |
| MsG0380015796.01.T02 | MTR_4g119050 | 35.644 | 101 | 64 | 1 | 21 | 120 | 1 | 101 | 9.80e-16 | 67.8 |
| MsG0380015796.01.T02 | MTR_4g119030 | 35.644 | 101 | 64 | 1 | 21 | 120 | 1 | 101 | 9.80e-16 | 67.8 |
| MsG0380015796.01.T02 | MTR_4g119040 | 35.644 | 101 | 64 | 1 | 21 | 120 | 1 | 101 | 9.80e-16 | 67.8 |
| MsG0380015796.01.T02 | MTR_7g026770 | 37.615 | 109 | 67 | 1 | 13 | 120 | 14 | 122 | 1.46e-15 | 71.2 |
| MsG0380015796.01.T02 | MTR_1g088925 | 34.043 | 94 | 62 | 0 | 21 | 114 | 1 | 94 | 2.58e-15 | 66.6 |
| MsG0380015796.01.T02 | MTR_7g108210 | 36.634 | 101 | 63 | 1 | 21 | 120 | 1 | 101 | 2.62e-15 | 67.0 |
| MsG0380015796.01.T02 | MTR_1g088920 | 34.043 | 94 | 62 | 0 | 21 | 114 | 1 | 94 | 2.64e-15 | 66.6 |
| MsG0380015796.01.T02 | MTR_2g048970 | 35.354 | 99 | 60 | 1 | 26 | 120 | 33 | 131 | 3.67e-15 | 67.4 |
| MsG0380015796.01.T02 | MTR_1g088910 | 36.000 | 100 | 64 | 0 | 21 | 120 | 1 | 100 | 5.99e-15 | 65.9 |
| MsG0380015796.01.T02 | MTR_2g019950 | 32.000 | 100 | 68 | 0 | 21 | 120 | 1 | 100 | 1.45e-14 | 65.1 |
| MsG0380015796.01.T02 | MTR_7g108260 | 35.106 | 94 | 61 | 0 | 27 | 120 | 7 | 100 | 2.03e-14 | 64.7 |
| MsG0380015796.01.T02 | MTR_5g077550 | 40.476 | 84 | 48 | 1 | 39 | 120 | 38 | 121 | 1.07e-13 | 63.2 |
| MsG0380015796.01.T02 | MTR_1g088895 | 35.106 | 94 | 61 | 0 | 27 | 120 | 7 | 100 | 1.27e-13 | 62.8 |
| MsG0380015796.01.T02 | MTR_7g108200 | 31.915 | 94 | 64 | 0 | 21 | 114 | 1 | 94 | 2.07e-12 | 59.3 |
| MsG0380015796.01.T02 | MTR_2g014760 | 35.000 | 100 | 62 | 3 | 22 | 120 | 28 | 125 | 2.11e-12 | 60.1 |
| MsG0380015796.01.T02 | MTR_2g090755 | 35.135 | 111 | 63 | 3 | 13 | 120 | 34 | 138 | 3.68e-11 | 57.0 |
| MsG0380015796.01.T02 | MTR_1g015890 | 31.132 | 106 | 69 | 2 | 18 | 120 | 43 | 147 | 6.49e-11 | 56.6 |
| MsG0380015796.01.T01 | MTR_3g077560 | 96.063 | 127 | 5 | 0 | 1 | 127 | 1 | 127 | 1.84e-90 | 258 |
| MsG0380015796.01.T01 | MTR_3g077570 | 81.667 | 120 | 19 | 1 | 1 | 120 | 1 | 117 | 2.25e-70 | 207 |
| MsG0380015796.01.T01 | MTR_7g035245 | 58.095 | 105 | 44 | 0 | 21 | 125 | 3 | 107 | 2.14e-43 | 138 |
| MsG0380015796.01.T01 | MTR_1g069255 | 48.000 | 100 | 49 | 2 | 25 | 123 | 87 | 184 | 5.58e-26 | 96.7 |
| MsG0380015796.01.T01 | MTR_2g038560 | 42.000 | 100 | 51 | 1 | 15 | 114 | 29 | 121 | 1.25e-22 | 86.3 |
| MsG0380015796.01.T01 | MTR_2g038560 | 42.000 | 100 | 51 | 1 | 15 | 114 | 73 | 165 | 1.73e-22 | 87.4 |
| MsG0380015796.01.T01 | MTR_2g038560 | 42.000 | 100 | 51 | 1 | 15 | 114 | 70 | 162 | 1.86e-22 | 87.0 |
| MsG0380015796.01.T01 | MTR_5g021090 | 42.353 | 85 | 49 | 0 | 30 | 114 | 42 | 126 | 1.66e-19 | 78.2 |
| MsG0380015796.01.T01 | MTR_2g019900 | 38.000 | 100 | 62 | 0 | 21 | 120 | 1 | 100 | 1.74e-18 | 75.1 |
| MsG0380015796.01.T01 | MTR_7g022690 | 39.423 | 104 | 62 | 1 | 18 | 120 | 27 | 130 | 6.22e-18 | 74.3 |
| MsG0380015796.01.T01 | MTR_7g022710 | 40.385 | 104 | 61 | 1 | 18 | 120 | 27 | 130 | 6.78e-18 | 74.3 |
| MsG0380015796.01.T01 | MTR_1g088905 | 34.000 | 100 | 66 | 0 | 21 | 120 | 1 | 100 | 6.96e-18 | 73.6 |
| MsG0380015796.01.T01 | MTR_7g022550 | 39.423 | 104 | 62 | 1 | 18 | 120 | 27 | 130 | 1.35e-17 | 73.6 |
| MsG0380015796.01.T01 | MTR_7g108250 | 34.000 | 100 | 66 | 0 | 21 | 120 | 1 | 100 | 1.25e-16 | 70.1 |
| MsG0380015796.01.T01 | MTR_7g108220 | 37.624 | 101 | 62 | 1 | 21 | 120 | 1 | 101 | 5.41e-16 | 68.6 |
| MsG0380015796.01.T01 | MTR_4g119050 | 35.644 | 101 | 64 | 1 | 21 | 120 | 1 | 101 | 9.80e-16 | 67.8 |
| MsG0380015796.01.T01 | MTR_4g119030 | 35.644 | 101 | 64 | 1 | 21 | 120 | 1 | 101 | 9.80e-16 | 67.8 |
| MsG0380015796.01.T01 | MTR_4g119040 | 35.644 | 101 | 64 | 1 | 21 | 120 | 1 | 101 | 9.80e-16 | 67.8 |
| MsG0380015796.01.T01 | MTR_7g026770 | 37.615 | 109 | 67 | 1 | 13 | 120 | 14 | 122 | 1.46e-15 | 71.2 |
| MsG0380015796.01.T01 | MTR_1g088925 | 34.043 | 94 | 62 | 0 | 21 | 114 | 1 | 94 | 2.58e-15 | 66.6 |
| MsG0380015796.01.T01 | MTR_7g108210 | 36.634 | 101 | 63 | 1 | 21 | 120 | 1 | 101 | 2.62e-15 | 67.0 |
| MsG0380015796.01.T01 | MTR_1g088920 | 34.043 | 94 | 62 | 0 | 21 | 114 | 1 | 94 | 2.64e-15 | 66.6 |
| MsG0380015796.01.T01 | MTR_2g048970 | 35.354 | 99 | 60 | 1 | 26 | 120 | 33 | 131 | 3.67e-15 | 67.4 |
| MsG0380015796.01.T01 | MTR_1g088910 | 36.000 | 100 | 64 | 0 | 21 | 120 | 1 | 100 | 5.99e-15 | 65.9 |
| MsG0380015796.01.T01 | MTR_2g019950 | 32.000 | 100 | 68 | 0 | 21 | 120 | 1 | 100 | 1.45e-14 | 65.1 |
| MsG0380015796.01.T01 | MTR_7g108260 | 35.106 | 94 | 61 | 0 | 27 | 120 | 7 | 100 | 2.03e-14 | 64.7 |
| MsG0380015796.01.T01 | MTR_5g077550 | 40.476 | 84 | 48 | 1 | 39 | 120 | 38 | 121 | 1.07e-13 | 63.2 |
| MsG0380015796.01.T01 | MTR_1g088895 | 35.106 | 94 | 61 | 0 | 27 | 120 | 7 | 100 | 1.27e-13 | 62.8 |
| MsG0380015796.01.T01 | MTR_7g108200 | 31.915 | 94 | 64 | 0 | 21 | 114 | 1 | 94 | 2.07e-12 | 59.3 |
| MsG0380015796.01.T01 | MTR_2g014760 | 35.000 | 100 | 62 | 3 | 22 | 120 | 28 | 125 | 2.11e-12 | 60.1 |
| MsG0380015796.01.T01 | MTR_2g090755 | 35.135 | 111 | 63 | 3 | 13 | 120 | 34 | 138 | 3.68e-11 | 57.0 |
| MsG0380015796.01.T01 | MTR_1g015890 | 31.132 | 106 | 69 | 2 | 18 | 120 | 43 | 147 | 6.49e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015796.01.T02 | AT5G63030 | 65.354 | 127 | 42 | 1 | 1 | 127 | 1 | 125 | 2.19e-59 | 179 |
| MsG0380015796.01.T02 | AT5G40370 | 62.857 | 105 | 39 | 0 | 21 | 125 | 3 | 107 | 4.38e-47 | 147 |
| MsG0380015796.01.T02 | AT5G40370 | 64.835 | 91 | 32 | 0 | 35 | 125 | 42 | 132 | 2.95e-41 | 134 |
| MsG0380015796.01.T02 | AT2G20270 | 48.000 | 100 | 50 | 2 | 20 | 117 | 73 | 172 | 1.71e-24 | 92.4 |
| MsG0380015796.01.T02 | AT5G20500 | 42.105 | 95 | 55 | 0 | 24 | 118 | 35 | 129 | 7.03e-23 | 87.0 |
| MsG0380015796.01.T02 | AT1G77370 | 46.512 | 86 | 46 | 0 | 30 | 115 | 43 | 128 | 3.07e-22 | 85.5 |
| MsG0380015796.01.T02 | AT4G28730 | 41.748 | 103 | 56 | 2 | 16 | 117 | 68 | 167 | 1.83e-21 | 84.7 |
| MsG0380015796.01.T02 | AT5G14070 | 39.450 | 109 | 58 | 1 | 20 | 120 | 30 | 138 | 6.24e-20 | 79.7 |
| MsG0380015796.01.T02 | AT2G20270 | 37.795 | 127 | 50 | 2 | 20 | 117 | 73 | 199 | 2.70e-19 | 79.7 |
| MsG0380015796.01.T02 | AT5G18600 | 38.000 | 100 | 62 | 0 | 21 | 120 | 1 | 100 | 1.62e-17 | 72.4 |
| MsG0380015796.01.T02 | AT1G77370 | 36.036 | 111 | 45 | 1 | 30 | 114 | 43 | 153 | 7.05e-17 | 72.4 |
| MsG0380015796.01.T02 | AT1G03020 | 39.000 | 100 | 61 | 0 | 21 | 120 | 1 | 100 | 1.05e-16 | 70.5 |
| MsG0380015796.01.T02 | AT3G02000 | 37.615 | 109 | 62 | 1 | 18 | 120 | 26 | 134 | 2.17e-16 | 70.5 |
| MsG0380015796.01.T02 | AT4G15700 | 39.394 | 99 | 59 | 1 | 22 | 120 | 3 | 100 | 8.24e-16 | 68.2 |
| MsG0380015796.01.T02 | AT3G62930 | 35.000 | 100 | 65 | 0 | 21 | 120 | 1 | 100 | 1.68e-15 | 67.4 |
| MsG0380015796.01.T02 | AT4G33040 | 32.203 | 118 | 76 | 1 | 7 | 120 | 25 | 142 | 3.07e-15 | 67.8 |
| MsG0380015796.01.T02 | AT4G15670 | 34.000 | 100 | 66 | 0 | 21 | 120 | 1 | 100 | 4.12e-15 | 66.2 |
| MsG0380015796.01.T02 | AT4G15680 | 33.000 | 100 | 67 | 0 | 21 | 120 | 1 | 100 | 8.58e-15 | 65.5 |
| MsG0380015796.01.T02 | AT4G15690 | 37.374 | 99 | 61 | 1 | 22 | 120 | 3 | 100 | 1.28e-14 | 65.1 |
| MsG0380015796.01.T02 | AT3G62950 | 31.683 | 101 | 68 | 1 | 21 | 120 | 1 | 101 | 1.75e-14 | 64.7 |
| MsG0380015796.01.T02 | AT4G15660 | 34.000 | 100 | 66 | 0 | 21 | 120 | 1 | 100 | 2.01e-14 | 64.7 |
| MsG0380015796.01.T02 | AT1G28480 | 32.773 | 119 | 67 | 3 | 7 | 120 | 25 | 135 | 2.14e-14 | 65.5 |
| MsG0380015796.01.T02 | AT3G21460 | 34.000 | 100 | 66 | 0 | 21 | 120 | 1 | 100 | 4.87e-14 | 63.5 |
| MsG0380015796.01.T02 | AT2G47880 | 31.000 | 100 | 69 | 0 | 21 | 120 | 1 | 100 | 9.49e-14 | 62.8 |
| MsG0380015796.01.T02 | AT1G06830 | 31.915 | 94 | 64 | 0 | 21 | 114 | 1 | 94 | 3.15e-13 | 61.6 |
| MsG0380015796.01.T02 | AT2G47870 | 30.693 | 101 | 69 | 1 | 21 | 120 | 1 | 101 | 3.42e-13 | 61.6 |
| MsG0380015796.01.T02 | AT3G62960 | 30.851 | 94 | 65 | 0 | 21 | 114 | 1 | 94 | 3.76e-13 | 61.2 |
| MsG0380015796.01.T02 | AT5G11930 | 33.645 | 107 | 61 | 3 | 15 | 120 | 49 | 146 | 4.55e-13 | 62.4 |
| MsG0380015796.01.T02 | AT4G28730 | 40.789 | 76 | 41 | 2 | 16 | 90 | 68 | 140 | 8.68e-13 | 61.2 |
| MsG0380015796.01.T02 | AT2G30540 | 32.979 | 94 | 63 | 0 | 21 | 114 | 1 | 94 | 1.32e-12 | 60.1 |
| MsG0380015796.01.T01 | AT5G63030 | 65.354 | 127 | 42 | 1 | 1 | 127 | 1 | 125 | 2.19e-59 | 179 |
| MsG0380015796.01.T01 | AT5G40370 | 62.857 | 105 | 39 | 0 | 21 | 125 | 3 | 107 | 4.38e-47 | 147 |
| MsG0380015796.01.T01 | AT5G40370 | 64.835 | 91 | 32 | 0 | 35 | 125 | 42 | 132 | 2.95e-41 | 134 |
| MsG0380015796.01.T01 | AT2G20270 | 48.000 | 100 | 50 | 2 | 20 | 117 | 73 | 172 | 1.71e-24 | 92.4 |
| MsG0380015796.01.T01 | AT5G20500 | 42.105 | 95 | 55 | 0 | 24 | 118 | 35 | 129 | 7.03e-23 | 87.0 |
| MsG0380015796.01.T01 | AT1G77370 | 46.512 | 86 | 46 | 0 | 30 | 115 | 43 | 128 | 3.07e-22 | 85.5 |
| MsG0380015796.01.T01 | AT4G28730 | 41.748 | 103 | 56 | 2 | 16 | 117 | 68 | 167 | 1.83e-21 | 84.7 |
| MsG0380015796.01.T01 | AT5G14070 | 39.450 | 109 | 58 | 1 | 20 | 120 | 30 | 138 | 6.24e-20 | 79.7 |
| MsG0380015796.01.T01 | AT2G20270 | 37.795 | 127 | 50 | 2 | 20 | 117 | 73 | 199 | 2.70e-19 | 79.7 |
| MsG0380015796.01.T01 | AT5G18600 | 38.000 | 100 | 62 | 0 | 21 | 120 | 1 | 100 | 1.62e-17 | 72.4 |
| MsG0380015796.01.T01 | AT1G77370 | 36.036 | 111 | 45 | 1 | 30 | 114 | 43 | 153 | 7.05e-17 | 72.4 |
| MsG0380015796.01.T01 | AT1G03020 | 39.000 | 100 | 61 | 0 | 21 | 120 | 1 | 100 | 1.05e-16 | 70.5 |
| MsG0380015796.01.T01 | AT3G02000 | 37.615 | 109 | 62 | 1 | 18 | 120 | 26 | 134 | 2.17e-16 | 70.5 |
| MsG0380015796.01.T01 | AT4G15700 | 39.394 | 99 | 59 | 1 | 22 | 120 | 3 | 100 | 8.24e-16 | 68.2 |
| MsG0380015796.01.T01 | AT3G62930 | 35.000 | 100 | 65 | 0 | 21 | 120 | 1 | 100 | 1.68e-15 | 67.4 |
| MsG0380015796.01.T01 | AT4G33040 | 32.203 | 118 | 76 | 1 | 7 | 120 | 25 | 142 | 3.07e-15 | 67.8 |
| MsG0380015796.01.T01 | AT4G15670 | 34.000 | 100 | 66 | 0 | 21 | 120 | 1 | 100 | 4.12e-15 | 66.2 |
| MsG0380015796.01.T01 | AT4G15680 | 33.000 | 100 | 67 | 0 | 21 | 120 | 1 | 100 | 8.58e-15 | 65.5 |
| MsG0380015796.01.T01 | AT4G15690 | 37.374 | 99 | 61 | 1 | 22 | 120 | 3 | 100 | 1.28e-14 | 65.1 |
| MsG0380015796.01.T01 | AT3G62950 | 31.683 | 101 | 68 | 1 | 21 | 120 | 1 | 101 | 1.75e-14 | 64.7 |
| MsG0380015796.01.T01 | AT4G15660 | 34.000 | 100 | 66 | 0 | 21 | 120 | 1 | 100 | 2.01e-14 | 64.7 |
| MsG0380015796.01.T01 | AT1G28480 | 32.773 | 119 | 67 | 3 | 7 | 120 | 25 | 135 | 2.14e-14 | 65.5 |
| MsG0380015796.01.T01 | AT3G21460 | 34.000 | 100 | 66 | 0 | 21 | 120 | 1 | 100 | 4.87e-14 | 63.5 |
| MsG0380015796.01.T01 | AT2G47880 | 31.000 | 100 | 69 | 0 | 21 | 120 | 1 | 100 | 9.49e-14 | 62.8 |
| MsG0380015796.01.T01 | AT1G06830 | 31.915 | 94 | 64 | 0 | 21 | 114 | 1 | 94 | 3.15e-13 | 61.6 |
| MsG0380015796.01.T01 | AT2G47870 | 30.693 | 101 | 69 | 1 | 21 | 120 | 1 | 101 | 3.42e-13 | 61.6 |
| MsG0380015796.01.T01 | AT3G62960 | 30.851 | 94 | 65 | 0 | 21 | 114 | 1 | 94 | 3.76e-13 | 61.2 |
| MsG0380015796.01.T01 | AT5G11930 | 33.645 | 107 | 61 | 3 | 15 | 120 | 49 | 146 | 4.55e-13 | 62.4 |
| MsG0380015796.01.T01 | AT4G28730 | 40.789 | 76 | 41 | 2 | 16 | 90 | 68 | 140 | 8.68e-13 | 61.2 |
| MsG0380015796.01.T01 | AT2G30540 | 32.979 | 94 | 63 | 0 | 21 | 114 | 1 | 94 | 1.32e-12 | 60.1 |
Find 12 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATAGTTACAGAATGTTTA+TGG | 0.206636 | 3:+75133193 | MsG0380015796.01.T01:exon |
| TTTATTTGTTGCAGCTGTTT+TGG | 0.272729 | 3:+75133095 | MsG0380015796.01.T01:intron |
| TCAGAGCTGAGCAGAGTTCT+TGG | 0.303817 | 3:-75133172 | None:intergenic |
| GTGACAGAGGATCATCTTAT+TGG | 0.329023 | 3:+75133355 | MsG0380015796.01.T01:three_prime_UTR |
| ATTCCCCTTCTCACTGATGC+TGG | 0.424957 | 3:+75133141 | MsG0380015796.01.T01:CDS |
| AATCTTTAAATATAAAACTC+TGG | 0.477736 | 3:+75133380 | MsG0380015796.01.T01:three_prime_UTR |
| CGCTCCAGCATCAGTGAGAA+GGG | 0.479868 | 3:-75133145 | None:intergenic |
| TATGTTAGTAGAGATATAGT+TGG | 0.492609 | 3:+75133307 | MsG0380015796.01.T01:intron |
| TCGCTCCAGCATCAGTGAGA+AGG | 0.547446 | 3:-75133146 | None:intergenic |
| GGGGAATCAATTGACCTGCA+CGG | 0.659613 | 3:-75133125 | None:intergenic |
| AATTCTAAAGTATGTGACAG+AGG | 0.664578 | 3:+75133342 | MsG0380015796.01.T01:intron |
| GCTCCAGCATCAGTGAGAAG+GGG | 0.673549 | 3:-75133144 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCCATAACATAATAAT+GGG | + | Chr3:75131890-75131909 | MsG0380015796.01.T01:intron | 15.0% |
| !! | AATCTTTAAATATAAAACTC+TGG | + | Chr3:75133380-75133399 | MsG0380015796.01.T01:three_prime_UTR | 15.0% |
| !!! | ATATTTTTTTTAGGTAATAG+TGG | + | Chr3:75132088-75132107 | MsG0380015796.01.T01:intron | 15.0% |
| !!! | TATATATGTCTTTTGATTTT+TGG | + | Chr3:75132196-75132215 | MsG0380015796.01.T01:intron | 15.0% |
| !! | ATCATGTTTATGTATTGAAT+TGG | + | Chr3:75132506-75132525 | MsG0380015796.01.T01:intron | 20.0% |
| !! | ATTTCTCAATAAATACAAAG+TGG | + | Chr3:75132807-75132826 | MsG0380015796.01.T01:intron | 20.0% |
| !! | CAAATTCCATAACATAATAA+TGG | + | Chr3:75131889-75131908 | MsG0380015796.01.T01:intron | 20.0% |
| !! | TTTCTCAATAAATACAAAGT+GGG | + | Chr3:75132808-75132827 | MsG0380015796.01.T01:intron | 20.0% |
| !!! | AAGCTAGAATATATAGTTTT+TGG | - | Chr3:75132360-75132379 | None:intergenic | 20.0% |
| !!! | GAGATGTCAATATTTTTTTT+AGG | + | Chr3:75132079-75132098 | MsG0380015796.01.T01:intron | 20.0% |
| ! | AAGGATATGCTTTATGAAAA+TGG | - | Chr3:75132568-75132587 | None:intergenic | 25.0% |
| ! | ATTTGTCTTTACCTATTTGA+AGG | + | Chr3:75132862-75132881 | MsG0380015796.01.T01:intron | 25.0% |
| ! | GAATAGTTACAGAATGTTTA+TGG | + | Chr3:75133193-75133212 | MsG0380015796.01.T01:exon | 25.0% |
| ! | GTTGATCAAAATACTAGTTA+AGG | + | Chr3:75132057-75132076 | MsG0380015796.01.T01:intron | 25.0% |
| ! | TAGAACCCATTATTATGTTA+TGG | - | Chr3:75131898-75131917 | None:intergenic | 25.0% |
| ! | TATGTTAGTAGAGATATAGT+TGG | + | Chr3:75133307-75133326 | MsG0380015796.01.T01:intron | 25.0% |
| ! | TGTTATGGAATTTGATATGA+AGG | - | Chr3:75131883-75131902 | None:intergenic | 25.0% |
| ! | TTCTCTACATATATAGTCTT+TGG | + | Chr3:75132140-75132159 | MsG0380015796.01.T01:intron | 25.0% |
| !! | AAGTTTAGAATAATTGATCG+CGG | + | Chr3:75131792-75131811 | MsG0380015796.01.T01:five_prime_UTR | 25.0% |
| !! | TCTAAACTTTTTGTCAAACT+AGG | - | Chr3:75131781-75131800 | None:intergenic | 25.0% |
| !!! | ATAATAATGGGTTCTATGTT+TGG | + | Chr3:75131902-75131921 | MsG0380015796.01.T01:intron | 25.0% |
| AAATAACCTGAAGACAAAGA+CGG | - | Chr3:75132005-75132024 | None:intergenic | 30.0% | |
| ACAGTACCTAATGTGTTTAT+TGG | + | Chr3:75132934-75132953 | MsG0380015796.01.T01:CDS | 30.0% | |
| ATGCTTTATGAAAATGGACA+AGG | - | Chr3:75132562-75132581 | None:intergenic | 30.0% | |
| ATGTATTGAATTGGTTGTCA+AGG | + | Chr3:75132515-75132534 | MsG0380015796.01.T01:intron | 30.0% | |
| CACTTTCTATATCCATTTCA+AGG | - | Chr3:75132702-75132721 | None:intergenic | 30.0% | |
| GATCAAACTATGTGTATGTT+TGG | - | Chr3:75132489-75132508 | None:intergenic | 30.0% | |
| TATATCTAAACTTGCATGCA+CGG | - | Chr3:75132173-75132192 | None:intergenic | 30.0% | |
| TCACAACATACATTACAGAT+GGG | - | Chr3:75132607-75132626 | None:intergenic | 30.0% | |
| TTTATGAAAATGGACAAGGA+GGG | - | Chr3:75132558-75132577 | None:intergenic | 30.0% | |
| !! | AATTCTAAAGTATGTGACAG+AGG | + | Chr3:75133342-75133361 | MsG0380015796.01.T01:intron | 30.0% |
| !! | TTTATTTGTTGCAGCTGTTT+TGG | + | Chr3:75133095-75133114 | MsG0380015796.01.T01:intron | 30.0% |
| AATAACCTGAAGACAAAGAC+GGG | - | Chr3:75132004-75132023 | None:intergenic | 35.0% | |
| AATCTCAACCCAGATAGAAA+AGG | - | Chr3:75132751-75132770 | None:intergenic | 35.0% | |
| AATTGGTTGTCAAGGCAATT+TGG | + | Chr3:75132523-75132542 | MsG0380015796.01.T01:intron | 35.0% | |
| CACATGAAAAAAGAAGCAAC+AGG | - | Chr3:75133001-75133020 | None:intergenic | 35.0% | |
| CTTATTGTGGTTACTGCAAA+CGG | + | Chr3:75132635-75132654 | MsG0380015796.01.T01:CDS | 35.0% | |
| CTTTACCTATTTGAAGGTGA+TGG | + | Chr3:75132868-75132887 | MsG0380015796.01.T01:intron | 35.0% | |
| CTTTATGAAAATGGACAAGG+AGG | - | Chr3:75132559-75132578 | None:intergenic | 35.0% | |
| GGAGAAGACAAAAATTGAAG+AGG | - | Chr3:75131862-75131881 | None:intergenic | 35.0% | |
| GGGATTGTCAAGGTTAAAAA+AGG | - | Chr3:75132587-75132606 | None:intergenic | 35.0% | |
| GTACCTAATGTGTTTATTGG+AGG | + | Chr3:75132937-75132956 | MsG0380015796.01.T01:CDS | 35.0% | |
| GTCACAACATACATTACAGA+TGG | - | Chr3:75132608-75132627 | None:intergenic | 35.0% | |
| TGTGACAGTAAGACTTATTG+TGG | + | Chr3:75132622-75132641 | MsG0380015796.01.T01:intron | 35.0% | |
| TTATTGTGGTTACTGCAAAC+GGG | + | Chr3:75132636-75132655 | MsG0380015796.01.T01:CDS | 35.0% | |
| TTGCCTCCAATAAACACATT+AGG | - | Chr3:75132943-75132962 | None:intergenic | 35.0% | |
| ! | GCTTTGTACCTTTTCTATCT+GGG | + | Chr3:75132740-75132759 | MsG0380015796.01.T01:intron | 35.0% |
| ! | TGCTTTGTACCTTTTCTATC+TGG | + | Chr3:75132739-75132758 | MsG0380015796.01.T01:intron | 35.0% |
| !!! | CTGTTGCTTCTTTTTTCATG+TGG | + | Chr3:75132999-75133018 | MsG0380015796.01.T01:intron | 35.0% |
| AAGGATCTACTCAAACAGCT+AGG | + | Chr3:75132661-75132680 | MsG0380015796.01.T01:CDS | 40.0% | |
| ATAACCTGAAGACAAAGACG+GGG | - | Chr3:75132003-75132022 | None:intergenic | 40.0% | |
| ATCCATTTCAAGGACCTTGT+AGG | - | Chr3:75132692-75132711 | None:intergenic | 40.0% | |
| ATCCTACAAGGTCCTTGAAA+TGG | + | Chr3:75132687-75132706 | MsG0380015796.01.T01:CDS | 40.0% | |
| CATCTCCATCACCTTCAAAT+AGG | - | Chr3:75132876-75132895 | None:intergenic | 40.0% | |
| CATTACAGATGGGATTGTCA+AGG | - | Chr3:75132597-75132616 | None:intergenic | 40.0% | |
| GTGACAGAGGATCATCTTAT+TGG | + | Chr3:75133355-75133374 | MsG0380015796.01.T01:three_prime_UTR | 40.0% | |
| TGACACCACAAAACCAAACA+CGG | - | Chr3:75132228-75132247 | None:intergenic | 40.0% | |
| TTCATGCAGCATTAACTGAG+TGG | + | Chr3:75132899-75132918 | MsG0380015796.01.T01:CDS | 40.0% | |
| TTTATTGGAGGCAAGCACAT+TGG | + | Chr3:75132949-75132968 | MsG0380015796.01.T01:CDS | 40.0% | |
| ! | CGTTGTTTCCATCTCTTCTT+TGG | - | Chr3:75131948-75131967 | None:intergenic | 40.0% |
| ! | TTGGTTCTCAGAAGACTCAA+GGG | + | Chr3:75131921-75131940 | MsG0380015796.01.T01:CDS | 40.0% |
| !! | TTTGGTTCTCAGAAGACTCA+AGG | + | Chr3:75131920-75131939 | MsG0380015796.01.T01:CDS | 40.0% |
| !! | TTTTTGGTCAAGTCCGTGTT+TGG | + | Chr3:75132212-75132231 | MsG0380015796.01.T01:intron | 40.0% |
| CAGCATTAACTGAGTGGACA+GGG | + | Chr3:75132905-75132924 | MsG0380015796.01.T01:CDS | 45.0% | |
| TAACCTGAAGACAAAGACGG+GGG | - | Chr3:75132002-75132021 | None:intergenic | 45.0% | |
| TCAAGGGACCAAAGAAGAGA+TGG | + | Chr3:75131937-75131956 | MsG0380015796.01.T01:CDS | 45.0% | |
| ! | CATTGGTGGTTGTGACTGTA+AGG | + | Chr3:75132966-75132985 | MsG0380015796.01.T01:intron | 45.0% |
| !!! | CAAGTCCGTGTTTGGTTTTG+TGG | + | Chr3:75132220-75132239 | MsG0380015796.01.T01:intron | 45.0% |
| ATTCCCCTTCTCACTGATGC+TGG | + | Chr3:75133141-75133160 | MsG0380015796.01.T01:CDS | 50.0% | |
| ATTGGAGGCAAGCACATTGG+TGG | + | Chr3:75132952-75132971 | MsG0380015796.01.T01:CDS | 50.0% | |
| GCAGCATTAACTGAGTGGAC+AGG | + | Chr3:75132904-75132923 | MsG0380015796.01.T01:CDS | 50.0% | |
| GGGGAATCAATTGACCTGCA+CGG | - | Chr3:75133128-75133147 | None:intergenic | 50.0% | |
| TAACTGAGTGGACAGGGCAA+AGG | + | Chr3:75132911-75132930 | MsG0380015796.01.T01:CDS | 50.0% | |
| TCAGAGCTGAGCAGAGTTCT+TGG | - | Chr3:75133175-75133194 | None:intergenic | 50.0% | |
| TGGTTACTGCAAACGGGTCA+AGG | + | Chr3:75132642-75132661 | MsG0380015796.01.T01:CDS | 50.0% | |
| !! | ACAGCTAGGAGCATCCTACA+AGG | + | Chr3:75132675-75132694 | MsG0380015796.01.T01:CDS | 50.0% |
| !!! | GTTTTGGAGAAACACCGTGC+AGG | + | Chr3:75133111-75133130 | MsG0380015796.01.T01:CDS | 50.0% |
| CGCTCCAGCATCAGTGAGAA+GGG | - | Chr3:75133148-75133167 | None:intergenic | 55.0% | |
| CTTCCCCCGTCTTTGTCTTC+AGG | + | Chr3:75131996-75132015 | MsG0380015796.01.T01:CDS | 55.0% | |
| GAAGACAAAGACGGGGGAAG+AGG | - | Chr3:75131996-75132015 | None:intergenic | 55.0% | |
| GCTCCAGCATCAGTGAGAAG+GGG | - | Chr3:75133147-75133166 | None:intergenic | 55.0% | |
| TCGCTCCAGCATCAGTGAGA+AGG | - | Chr3:75133149-75133168 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 75131776 | 75133411 | 75131776 | ID=MsG0380015796.01;Name=MsG0380015796.01 |
| Chr3 | mRNA | 75131776 | 75133407 | 75131776 | ID=MsG0380015796.01.T01;Parent=MsG0380015796.01;Name=MsG0380015796.01.T01;_AED=0.48;_eAED=0.48;_QI=109|1|1|1|0.6|0.33|6|169|127 |
| Chr3 | exon | 75133109 | 75133310 | 75133109 | ID=MsG0380015796.01.T01:exon:1001;Parent=MsG0380015796.01.T01 |
| Chr3 | exon | 75133355 | 75133407 | 75133355 | ID=MsG0380015796.01.T01:exon:1002;Parent=MsG0380015796.01.T01 |
| Chr3 | five_prime_UTR | 75131776 | 75131812 | 75131776 | ID=MsG0380015796.01.T01:five_prime_utr;Parent=MsG0380015796.01.T01 |
| Chr3 | five_prime_UTR | 75131836 | 75131907 | 75131836 | ID=MsG0380015796.01.T01:five_prime_utr;Parent=MsG0380015796.01.T01 |
| Chr3 | CDS | 75131908 | 75132017 | 75131908 | ID=MsG0380015796.01.T01:cds;Parent=MsG0380015796.01.T01 |
| Chr3 | CDS | 75132630 | 75132718 | 75132630 | ID=MsG0380015796.01.T01:cds;Parent=MsG0380015796.01.T01 |
| Chr3 | CDS | 75132884 | 75132982 | 75132884 | ID=MsG0380015796.01.T01:cds;Parent=MsG0380015796.01.T01 |
| Chr3 | CDS | 75133109 | 75133194 | 75133109 | ID=MsG0380015796.01.T01:cds;Parent=MsG0380015796.01.T01 |
| Chr3 | three_prime_UTR | 75133195 | 75133310 | 75133195 | ID=MsG0380015796.01.T01:three_prime_utr;Parent=MsG0380015796.01.T01 |
| Chr3 | three_prime_UTR | 75133355 | 75133407 | 75133355 | ID=MsG0380015796.01.T01:three_prime_utr;Parent=MsG0380015796.01.T01 |
| Chr3 | mRNA | 75131776 | 75133411 | 75131776 | ID=MsG0380015796.01.T02;Parent=MsG0380015796.01;Name=MsG0380015796.01.T02;_AED=0.48;_eAED=0.48;_QI=109|1|1|1|0.75|0.6|5|217|127 |
| Chr3 | exon | 75133109 | 75133411 | 75133109 | ID=MsG0380015796.01.T02:exon:1003;Parent=MsG0380015796.01.T02 |
| Chr3 | five_prime_UTR | 75131776 | 75131812 | 75131776 | ID=MsG0380015796.01.T02:five_prime_utr;Parent=MsG0380015796.01.T02 |
| Chr3 | five_prime_UTR | 75131836 | 75131907 | 75131836 | ID=MsG0380015796.01.T02:five_prime_utr;Parent=MsG0380015796.01.T02 |
| Chr3 | CDS | 75131908 | 75132017 | 75131908 | ID=MsG0380015796.01.T02:cds;Parent=MsG0380015796.01.T02 |
| Chr3 | CDS | 75132630 | 75132718 | 75132630 | ID=MsG0380015796.01.T02:cds;Parent=MsG0380015796.01.T02 |
| Chr3 | CDS | 75132884 | 75132982 | 75132884 | ID=MsG0380015796.01.T02:cds;Parent=MsG0380015796.01.T02 |
| Chr3 | CDS | 75133109 | 75133194 | 75133109 | ID=MsG0380015796.01.T02:cds;Parent=MsG0380015796.01.T02 |
| Chr3 | three_prime_UTR | 75133195 | 75133411 | 75133195 | ID=MsG0380015796.01.T02:three_prime_utr;Parent=MsG0380015796.01.T02 |
| Gene Sequence |
| Protein sequence |
