Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004098.01.T01 | ACH92805.1 | 79.554 | 269 | 36 | 2 | 1 | 251 | 1 | 268 | 9.61E-141 | 420 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004098.01.T01 | B5THF8 | 79.554 | 269 | 36 | 2 | 1 | 251 | 1 | 268 | 4.59e-141 | 420 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048361.01 | MsG0180004098.01 | 0.801484 | 8.809001e-49 | 4.211796e-46 |
| MsG0180000984.01 | MsG0180004098.01 | 0.833623 | 4.794698e-56 | 5.552150e-53 |
| MsG0180004098.01 | MsG0180004102.01 | 0.845931 | 2.985090e-59 | 5.054815e-56 |
| MsG0180004098.01 | MsG0180004583.01 | 0.801912 | 7.196117e-49 | 3.478164e-46 |
| MsG0180004098.01 | MsG0280006924.01 | 0.816702 | 4.825150e-52 | 3.443722e-49 |
| MsG0180004098.01 | MsG0280010352.01 | 0.813276 | 2.777820e-51 | 1.806036e-48 |
| MsG0180004098.01 | MsG0280010579.01 | 0.802880 | 4.546628e-49 | 2.252414e-46 |
| MsG0180004098.01 | MsG0380013636.01 | 0.842692 | 2.213703e-58 | 3.383064e-55 |
| MsG0180004098.01 | MsG0380015736.01 | 0.892155 | 2.059154e-74 | 1.859526e-70 |
| MsG0180004098.01 | MsG0380016480.01 | 0.820902 | 5.366334e-53 | 4.301366e-50 |
| MsG0180004098.01 | MsG0380017421.01 | 0.820881 | 5.426250e-53 | 4.346812e-50 |
| MsG0180004098.01 | MsG0380017605.01 | 0.826413 | 2.749930e-54 | 2.577218e-51 |
| MsG0180004098.01 | MsG0380018028.01 | 0.847763 | 9.412374e-60 | 1.690298e-56 |
| MsG0180004098.01 | MsG0480019124.01 | 0.809297 | 2.028384e-50 | 1.186488e-47 |
| MsG0180004098.01 | MsG0480021902.01 | 0.817931 | 2.553343e-52 | 1.884800e-49 |
| MsG0180004098.01 | MsG0480022036.01 | 0.805247 | 1.463646e-49 | 7.705338e-47 |
| MsG0180004098.01 | MsG0480023275.01 | 0.818244 | 2.168590e-52 | 1.614517e-49 |
| MsG0180004098.01 | MsG0580024748.01 | 0.800714 | 1.265933e-48 | 5.935741e-46 |
| MsG0180004098.01 | MsG0580029494.01 | 0.826164 | 3.151725e-54 | 2.932807e-51 |
| MsG0180004098.01 | MsG0780037371.01 | 0.842109 | 3.159967e-58 | 4.742204e-55 |
| MsG0180004098.01 | MsG0880043855.01 | 0.880991 | 3.478578e-70 | 2.002789e-66 |
| MsG0180004098.01 | MsG0880043920.01 | 0.811971 | 5.359734e-51 | 3.365008e-48 |
| MsG0180004098.01 | MsG0880045612.01 | 0.805169 | 1.519602e-49 | 7.984233e-47 |
| MsG0180004098.01 | MsG0880046319.01 | 0.874191 | 8.189578e-68 | 3.652496e-64 |
| MsG0180004098.01 | MsG0880046904.01 | 0.802455 | 5.565623e-49 | 2.727521e-46 |
| MsG0180004098.01 | MsG0880046940.01 | 0.816196 | 6.265585e-52 | 4.410456e-49 |
| MsG0180004098.01 | MsG0880047228.01 | 0.814397 | 1.572743e-51 | 1.054188e-48 |
| MsG0180004098.01 | MsG0880047649.01 | 0.806246 | 9.027178e-50 | 4.876047e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004098.01.T01 | MTR_1g075170 | 79.554 | 269 | 36 | 2 | 1 | 251 | 1 | 268 | 1.40e-144 | 420 |
| MsG0180004098.01.T01 | MTR_1g075153 | 51.587 | 252 | 108 | 4 | 12 | 250 | 13 | 263 | 3.25e-74 | 238 |
| MsG0180004098.01.T01 | MTR_1g075180 | 44.770 | 239 | 117 | 4 | 27 | 252 | 7 | 243 | 2.89e-57 | 193 |
| MsG0180004098.01.T01 | MTR_1g040360 | 35.424 | 271 | 136 | 6 | 19 | 251 | 13 | 282 | 1.03e-34 | 131 |
| MsG0180004098.01.T01 | MTR_8g063020 | 42.484 | 153 | 70 | 2 | 83 | 234 | 49 | 184 | 2.22e-26 | 105 |
| MsG0180004098.01.T01 | MTR_1g074950 | 31.835 | 267 | 134 | 7 | 31 | 252 | 21 | 284 | 1.02e-24 | 102 |
| MsG0180004098.01.T01 | MTR_1g074990 | 27.820 | 266 | 142 | 6 | 31 | 250 | 20 | 281 | 3.11e-23 | 98.6 |
| MsG0180004098.01.T01 | MTR_1g075095 | 26.592 | 267 | 146 | 6 | 31 | 250 | 20 | 283 | 3.22e-20 | 89.7 |
| MsG0180004098.01.T01 | MTR_1g075030 | 24.907 | 269 | 148 | 7 | 31 | 250 | 20 | 283 | 2.51e-18 | 84.3 |
| MsG0180004098.01.T01 | MTR_1g075230 | 25.379 | 264 | 151 | 7 | 31 | 250 | 20 | 281 | 3.07e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004098.01.T01 | AT3G01680 | 30.882 | 136 | 83 | 3 | 89 | 216 | 123 | 255 | 1.56e-11 | 64.3 |
Find 62 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACTTGTCACATTCTTAT+TGG | 0.141753 | 1:+73342497 | MsG0180004098.01.T01:CDS |
| CTTGGGAGGTACCATTCTTT+TGG | 0.182584 | 1:-73341679 | None:intergenic |
| ATCAATATCGTCAAGCTTAA+AGG | 0.190937 | 1:-73341726 | None:intergenic |
| GTGCAATTACGTATCTTAAT+AGG | 0.248309 | 1:+73342394 | MsG0180004098.01.T01:CDS |
| GCCATTGATTGGTACATCTT+TGG | 0.251729 | 1:-73341648 | None:intergenic |
| GAAAGTTGCAAAGTGGAAAT+TGG | 0.271554 | 1:+73342847 | MsG0180004098.01.T01:CDS |
| TCTGCCTCAACTCAGATTTC+TGG | 0.271962 | 1:+73341836 | MsG0180004098.01.T01:CDS |
| AACTCTAGCTGCATTCTCTT+TGG | 0.285355 | 1:+73342365 | MsG0180004098.01.T01:CDS |
| GCTGCATTCTCTTTGGAGTA+TGG | 0.291746 | 1:+73342372 | MsG0180004098.01.T01:CDS |
| GGAGCTGAGATTTCTGTTCT+TGG | 0.330206 | 1:-73341697 | None:intergenic |
| TCGTCAAGCTTAAAGGGATT+AGG | 0.343557 | 1:-73341719 | None:intergenic |
| TAACGAGTTGAGGCCTCATT+TGG | 0.343868 | 1:+73342825 | MsG0180004098.01.T01:CDS |
| GAGCTGAGATTTCTGTTCTT+GGG | 0.379012 | 1:-73341696 | None:intergenic |
| CGTCAAGCTTAAAGGGATTA+GGG | 0.380837 | 1:-73341718 | None:intergenic |
| GGATTCCTCTTGTTGTGTAT+TGG | 0.381172 | 1:+73342610 | MsG0180004098.01.T01:CDS |
| ATCACCTCAGAGACTTCTCC+TGG | 0.410904 | 1:+73342325 | MsG0180004098.01.T01:CDS |
| TGGGTCGTAGTGCCATTGAT+TGG | 0.424583 | 1:-73341659 | None:intergenic |
| TGGGCAGCATGGTCAGCTTT+CGG | 0.428459 | 1:+73342543 | MsG0180004098.01.T01:CDS |
| GCTACCATTGTTGCCTGTAC+TGG | 0.428950 | 1:+73342639 | MsG0180004098.01.T01:CDS |
| GGGTGATATAAACTTTGTTA+AGG | 0.430161 | 1:-73341751 | None:intergenic |
| TCAATATCGTCAAGCTTAAA+GGG | 0.433331 | 1:-73341725 | None:intergenic |
| GTCAGCTTTCGGTTATGACT+TGG | 0.459956 | 1:+73342554 | MsG0180004098.01.T01:CDS |
| TGTTGGAGACAAGCTTGAAA+AGG | 0.463060 | 1:-73341808 | None:intergenic |
| CACCCATGTCAAAGATTATG+AGG | 0.466569 | 1:+73341769 | MsG0180004098.01.T01:CDS |
| GCCTGTACTGGTAACCTTGT+CGG | 0.472360 | 1:+73342651 | MsG0180004098.01.T01:CDS |
| TGCACATTCTGCTGTGCCGC+GGG | 0.492853 | 1:-73342277 | None:intergenic |
| GAACCTTTCTGAATTGAACT+TGG | 0.497414 | 1:-73342461 | None:intergenic |
| ACTTTGCAACTTTCCAAATG+AGG | 0.497491 | 1:-73342838 | None:intergenic |
| ACCGACAAGGTTACCAGTAC+AGG | 0.500684 | 1:-73342652 | None:intergenic |
| GGAATCCATTGCATAGCATC+AGG | 0.501216 | 1:-73342594 | None:intergenic |
| AAATTAATAAGATTTGATAC+AGG | 0.501510 | 1:-73341592 | None:intergenic |
| TCCAAAGATGTACCAATCAA+TGG | 0.506446 | 1:+73341647 | MsG0180004098.01.T01:CDS |
| GTTGGAGACAAGCTTGAAAA+GGG | 0.511266 | 1:-73341807 | None:intergenic |
| AGGAGAAGTCTCTGAGGTGA+TGG | 0.514175 | 1:-73342323 | None:intergenic |
| TAGCCAAGTTCAATTCAGAA+AGG | 0.519066 | 1:+73342458 | MsG0180004098.01.T01:CDS |
| GGAGAATCCACATTGTTGTC+TGG | 0.519858 | 1:-73342302 | None:intergenic |
| AGTTGAGGCAGAGAGGATGT+TGG | 0.533320 | 1:-73341825 | None:intergenic |
| GGCACTACGACCCAAAAGAA+TGG | 0.536228 | 1:+73341668 | MsG0180004098.01.T01:CDS |
| CTGAGATTTCTGTTCTTGGG+AGG | 0.538881 | 1:-73341693 | None:intergenic |
| ACAAGTTCAGTTATATCAGC+AGG | 0.544593 | 1:-73342483 | None:intergenic |
| TTCCTCATAATCTTTGACAT+GGG | 0.560884 | 1:-73341771 | None:intergenic |
| ATTCCTCATAATCTTTGACA+TGG | 0.565424 | 1:-73341772 | None:intergenic |
| GTGCACATTCTGCTGTGCCG+CGG | 0.581489 | 1:-73342278 | None:intergenic |
| CTTTGCCTGATGCTATGCAA+TGG | 0.584464 | 1:+73342589 | MsG0180004098.01.T01:CDS |
| ACTGTCCAATACACAACAAG+AGG | 0.585978 | 1:-73342615 | None:intergenic |
| ATGTGGTGGTTAACGAGTTG+AGG | 0.588601 | 1:+73342815 | MsG0180004098.01.T01:CDS |
| AGTTCCAGAAATCTGAGTTG+AGG | 0.604866 | 1:-73341840 | None:intergenic |
| TACATCTTTGGACAATGCAG+TGG | 0.608358 | 1:-73341636 | None:intergenic |
| ACATTAAACAGTGGGCAGCA+TGG | 0.610506 | 1:+73342532 | MsG0180004098.01.T01:CDS |
| ATTCAATCATCAGACACACT+TGG | 0.616321 | 1:+73342417 | MsG0180004098.01.T01:CDS |
| TTTGGACAATGCAGTGGACA+TGG | 0.617395 | 1:-73341630 | None:intergenic |
| TCATTTGGAAAGTTGCAAAG+TGG | 0.618816 | 1:+73342840 | MsG0180004098.01.T01:CDS |
| GTTACCAGTACAGGCAACAA+TGG | 0.619153 | 1:-73342643 | None:intergenic |
| AAATCTGAGTTGAGGCAGAG+AGG | 0.625519 | 1:-73341832 | None:intergenic |
| GTTACAAGACATTAAACAGT+GGG | 0.627387 | 1:+73342524 | MsG0180004098.01.T01:CDS |
| TCACCTCAGAGACTTCTCCT+GGG | 0.638066 | 1:+73342326 | MsG0180004098.01.T01:CDS |
| CACCTAGCAGAAATTAAGCA+AGG | 0.644336 | 1:+73341546 | None:intergenic |
| CTTCCCAGGAGAAGTCTCTG+AGG | 0.675866 | 1:-73342329 | None:intergenic |
| TGTTACAAGACATTAAACAG+TGG | 0.717621 | 1:+73342523 | MsG0180004098.01.T01:CDS |
| TGACAGATGATAACGACCCG+CGG | 0.734185 | 1:+73342261 | MsG0180004098.01.T01:intron |
| GTGCACACCAGACAACAATG+TGG | 0.739193 | 1:+73342295 | MsG0180004098.01.T01:CDS |
| GAACTTACGATATACCGACA+AGG | 0.746980 | 1:-73342665 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATCAGATTATAAAAAA+AGG | + | Chr1:73342785-73342804 | MsG0180004098.01.T01:CDS | 10.0% |
| !! | AAATTAATAAGATTTGATAC+AGG | - | Chr1:73341595-73341614 | None:intergenic | 15.0% |
| !! | ATAAAAAAAAAAAACTCCAT+CGG | + | Chr1:73342104-73342123 | MsG0180004098.01.T01:intron | 15.0% |
| !! | TATTAAAATGTATAAGTGAA+AGG | - | Chr1:73341893-73341912 | None:intergenic | 15.0% |
| !!! | TTTTATTAATCTGTATGAAA+TGG | + | Chr1:73342179-73342198 | MsG0180004098.01.T01:intron | 15.0% |
| !! | TATATACATGTAAGTGTAAA+TGG | + | Chr1:73342737-73342756 | MsG0180004098.01.T01:intron | 20.0% |
| ! | AAATTATCCTTATTAACCGA+TGG | - | Chr1:73342123-73342142 | None:intergenic | 25.0% |
| ! | ATGTATATACGATATAGTGA+CGG | - | Chr1:73342726-73342745 | None:intergenic | 25.0% |
| !! | AATGGTTCTTTTATTCTTGT+AGG | + | Chr1:73342755-73342774 | MsG0180004098.01.T01:intron | 25.0% |
| !! | ATGGTTCTTTTATTCTTGTA+GGG | + | Chr1:73342756-73342775 | MsG0180004098.01.T01:intron | 25.0% |
| ATCAATATCGTCAAGCTTAA+AGG | - | Chr1:73341729-73341748 | None:intergenic | 30.0% | |
| ATTCCTCATAATCTTTGACA+TGG | - | Chr1:73341775-73341794 | None:intergenic | 30.0% | |
| GGGTGATATAAACTTTGTTA+AGG | - | Chr1:73341754-73341773 | None:intergenic | 30.0% | |
| GTGCAATTACGTATCTTAAT+AGG | + | Chr1:73342394-73342413 | MsG0180004098.01.T01:CDS | 30.0% | |
| GTTACAAGACATTAAACAGT+GGG | + | Chr1:73342524-73342543 | MsG0180004098.01.T01:CDS | 30.0% | |
| TCAATATCGTCAAGCTTAAA+GGG | - | Chr1:73341728-73341747 | None:intergenic | 30.0% | |
| TGAACTTGTCACATTCTTAT+TGG | + | Chr1:73342497-73342516 | MsG0180004098.01.T01:CDS | 30.0% | |
| TGTTACAAGACATTAAACAG+TGG | + | Chr1:73342523-73342542 | MsG0180004098.01.T01:CDS | 30.0% | |
| TTCCTCATAATCTTTGACAT+GGG | - | Chr1:73341774-73341793 | None:intergenic | 30.0% | |
| ! | AAAAACTCCATCGGTTAATA+AGG | + | Chr1:73342113-73342132 | MsG0180004098.01.T01:intron | 30.0% |
| ACAAGTTCAGTTATATCAGC+AGG | - | Chr1:73342486-73342505 | None:intergenic | 35.0% | |
| ACTTTGCAACTTTCCAAATG+AGG | - | Chr1:73342841-73342860 | None:intergenic | 35.0% | |
| ATTCAATCATCAGACACACT+TGG | + | Chr1:73342417-73342436 | MsG0180004098.01.T01:CDS | 35.0% | |
| GAAAGTTGCAAAGTGGAAAT+TGG | + | Chr1:73342847-73342866 | MsG0180004098.01.T01:CDS | 35.0% | |
| GAACCTTTCTGAATTGAACT+TGG | - | Chr1:73342464-73342483 | None:intergenic | 35.0% | |
| GATAGACGAAAGAATCAAGA+TGG | - | Chr1:73342156-73342175 | None:intergenic | 35.0% | |
| TAAAAAAAGGCTCTCTCATG+TGG | + | Chr1:73342798-73342817 | MsG0180004098.01.T01:CDS | 35.0% | |
| TAGCCAAGTTCAATTCAGAA+AGG | + | Chr1:73342458-73342477 | MsG0180004098.01.T01:CDS | 35.0% | |
| TCATTTGGAAAGTTGCAAAG+TGG | + | Chr1:73342840-73342859 | MsG0180004098.01.T01:CDS | 35.0% | |
| TCCAAAGATGTACCAATCAA+TGG | + | Chr1:73341647-73341666 | MsG0180004098.01.T01:CDS | 35.0% | |
| ! | GTCAGGTTAGTTGTTAATGT+CGG | + | Chr1:73342043-73342062 | MsG0180004098.01.T01:intron | 35.0% |
| AACTCTAGCTGCATTCTCTT+TGG | + | Chr1:73342365-73342384 | MsG0180004098.01.T01:CDS | 40.0% | |
| ACTGTCCAATACACAACAAG+AGG | - | Chr1:73342618-73342637 | None:intergenic | 40.0% | |
| AGTTCCAGAAATCTGAGTTG+AGG | - | Chr1:73341843-73341862 | None:intergenic | 40.0% | |
| CACCCATGTCAAAGATTATG+AGG | + | Chr1:73341769-73341788 | MsG0180004098.01.T01:CDS | 40.0% | |
| CGTCAAGCTTAAAGGGATTA+GGG | - | Chr1:73341721-73341740 | None:intergenic | 40.0% | |
| GAACTTACGATATACCGACA+AGG | - | Chr1:73342668-73342687 | None:intergenic | 40.0% | |
| GAGCTGAGATTTCTGTTCTT+GGG | - | Chr1:73341699-73341718 | None:intergenic | 40.0% | |
| GTTGGAGACAAGCTTGAAAA+GGG | - | Chr1:73341810-73341829 | None:intergenic | 40.0% | |
| TACATCTTTGGACAATGCAG+TGG | - | Chr1:73341639-73341658 | None:intergenic | 40.0% | |
| TCGTCAAGCTTAAAGGGATT+AGG | - | Chr1:73341722-73341741 | None:intergenic | 40.0% | |
| TGTTGGAGACAAGCTTGAAA+AGG | - | Chr1:73341811-73341830 | None:intergenic | 40.0% | |
| ! | GCCATTGATTGGTACATCTT+TGG | - | Chr1:73341651-73341670 | None:intergenic | 40.0% |
| ! | GGATTCCTCTTGTTGTGTAT+TGG | + | Chr1:73342610-73342629 | MsG0180004098.01.T01:CDS | 40.0% |
| ! | TATCAATGCTTTTGCTTCCC+AGG | - | Chr1:73342346-73342365 | None:intergenic | 40.0% |
| !!! | TTGGGAGGTACCATTCTTTT+GGG | - | Chr1:73341681-73341700 | None:intergenic | 40.0% |
| AAAAAGGCTCTCTCATGTGG+TGG | + | Chr1:73342801-73342820 | MsG0180004098.01.T01:CDS | 45.0% | |
| ACATTAAACAGTGGGCAGCA+TGG | + | Chr1:73342532-73342551 | MsG0180004098.01.T01:CDS | 45.0% | |
| ATGTGGTGGTTAACGAGTTG+AGG | + | Chr1:73342815-73342834 | MsG0180004098.01.T01:CDS | 45.0% | |
| CCTGAAGAGGATTTCTTGTC+AGG | + | Chr1:73342026-73342045 | MsG0180004098.01.T01:intron | 45.0% | |
| CCTGACAAGAAATCCTCTTC+AGG | - | Chr1:73342029-73342048 | None:intergenic | 45.0% | |
| CTGAGATTTCTGTTCTTGGG+AGG | - | Chr1:73341696-73341715 | None:intergenic | 45.0% | |
| CTTTGCCTGATGCTATGCAA+TGG | + | Chr1:73342589-73342608 | MsG0180004098.01.T01:CDS | 45.0% | |
| GGAATCCATTGCATAGCATC+AGG | - | Chr1:73342597-73342616 | None:intergenic | 45.0% | |
| GGAGAATCCACATTGTTGTC+TGG | - | Chr1:73342305-73342324 | None:intergenic | 45.0% | |
| GGAGCTGAGATTTCTGTTCT+TGG | - | Chr1:73341700-73341719 | None:intergenic | 45.0% | |
| GTCAGCTTTCGGTTATGACT+TGG | + | Chr1:73342554-73342573 | MsG0180004098.01.T01:CDS | 45.0% | |
| GTTACCAGTACAGGCAACAA+TGG | - | Chr1:73342646-73342665 | None:intergenic | 45.0% | |
| TCTGCCTCAACTCAGATTTC+TGG | + | Chr1:73341836-73341855 | MsG0180004098.01.T01:CDS | 45.0% | |
| TTTGGACAATGCAGTGGACA+TGG | - | Chr1:73341633-73341652 | None:intergenic | 45.0% | |
| ! | AAATCTGAGTTGAGGCAGAG+AGG | - | Chr1:73341835-73341854 | None:intergenic | 45.0% |
| ! | TAACGAGTTGAGGCCTCATT+TGG | + | Chr1:73342825-73342844 | MsG0180004098.01.T01:CDS | 45.0% |
| !! | GCTGCATTCTCTTTGGAGTA+TGG | + | Chr1:73342372-73342391 | MsG0180004098.01.T01:CDS | 45.0% |
| !!! | CTTGGGAGGTACCATTCTTT+TGG | - | Chr1:73341682-73341701 | None:intergenic | 45.0% |
| ACCGACAAGGTTACCAGTAC+AGG | - | Chr1:73342655-73342674 | None:intergenic | 50.0% | |
| AGTTGAGGCAGAGAGGATGT+TGG | - | Chr1:73341828-73341847 | None:intergenic | 50.0% | |
| ATCACCTCAGAGACTTCTCC+TGG | + | Chr1:73342325-73342344 | MsG0180004098.01.T01:CDS | 50.0% | |
| CAGACTTCTCTGTCCTGAAG+AGG | + | Chr1:73342013-73342032 | MsG0180004098.01.T01:intron | 50.0% | |
| CTCTTCAGGACAGAGAAGTC+TGG | - | Chr1:73342015-73342034 | None:intergenic | 50.0% | |
| GCTACCATTGTTGCCTGTAC+TGG | + | Chr1:73342639-73342658 | MsG0180004098.01.T01:CDS | 50.0% | |
| GGCACTACGACCCAAAAGAA+TGG | + | Chr1:73341668-73341687 | MsG0180004098.01.T01:CDS | 50.0% | |
| GTGCACACCAGACAACAATG+TGG | + | Chr1:73342295-73342314 | MsG0180004098.01.T01:CDS | 50.0% | |
| TCACCTCAGAGACTTCTCCT+GGG | + | Chr1:73342326-73342345 | MsG0180004098.01.T01:CDS | 50.0% | |
| ! | GCCTGTACTGGTAACCTTGT+CGG | + | Chr1:73342651-73342670 | MsG0180004098.01.T01:CDS | 50.0% |
| ! | TGACAGATGATAACGACCCG+CGG | + | Chr1:73342261-73342280 | MsG0180004098.01.T01:intron | 50.0% |
| ! | TGGGTCGTAGTGCCATTGAT+TGG | - | Chr1:73341662-73341681 | None:intergenic | 50.0% |
| !! | AGGAGAAGTCTCTGAGGTGA+TGG | - | Chr1:73342326-73342345 | None:intergenic | 50.0% |
| CTTCCCAGGAGAAGTCTCTG+AGG | - | Chr1:73342332-73342351 | None:intergenic | 55.0% | |
| TGGGCAGCATGGTCAGCTTT+CGG | + | Chr1:73342543-73342562 | MsG0180004098.01.T01:CDS | 55.0% | |
| GTGCACATTCTGCTGTGCCG+CGG | - | Chr1:73342281-73342300 | None:intergenic | 60.0% | |
| TGCACATTCTGCTGTGCCGC+GGG | - | Chr1:73342280-73342299 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 73341561 | 73342876 | 73341561 | ID=MsG0180004098.01;Name=MsG0180004098.01 |
| Chr1 | mRNA | 73341561 | 73342876 | 73341561 | ID=MsG0180004098.01.T01;Parent=MsG0180004098.01;Name=MsG0180004098.01.T01;_AED=0.49;_eAED=0.50;_QI=71|0.5|0.66|1|1|1|3|0|252 |
| Chr1 | exon | 73341561 | 73341877 | 73341561 | ID=MsG0180004098.01.T01:exon:5260;Parent=MsG0180004098.01.T01 |
| Chr1 | exon | 73342267 | 73342679 | 73342267 | ID=MsG0180004098.01.T01:exon:5261;Parent=MsG0180004098.01.T01 |
| Chr1 | exon | 73342777 | 73342876 | 73342777 | ID=MsG0180004098.01.T01:exon:5262;Parent=MsG0180004098.01.T01 |
| Chr1 | five_prime_UTR | 73341561 | 73341631 | 73341561 | ID=MsG0180004098.01.T01:five_prime_utr;Parent=MsG0180004098.01.T01 |
| Chr1 | CDS | 73341632 | 73341877 | 73341632 | ID=MsG0180004098.01.T01:cds;Parent=MsG0180004098.01.T01 |
| Chr1 | CDS | 73342267 | 73342679 | 73342267 | ID=MsG0180004098.01.T01:cds;Parent=MsG0180004098.01.T01 |
| Chr1 | CDS | 73342777 | 73342876 | 73342777 | ID=MsG0180004098.01.T01:cds;Parent=MsG0180004098.01.T01 |
| Gene Sequence |
| Protein sequence |
