AlfalfaGEDB | MsG0480020691.01

M. sativa cultivar ZhongmuNo.1 / MsG0480020691.01

KEGG: K04565
GO: GO:0004784 GO:0006801 GO:0046872 GO:0055114
PFAM: PF00080

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020691.01.T01	XP_003606328.2	94.03	201	5	2	1	195	1	200	2.47E-127	367

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020691.01.T01	O65198	93.401	197	6	2	5	195	1	196	6.75E-117	333

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048929.01	MsG0480020691.01	0.804308	2.298801e-49	1.181320e-46
MsG0080049053.01	MsG0480020691.01	0.816134	6.466536e-52	4.544183e-49
MsG0180003296.01	MsG0480020691.01	0.820711	5.936278e-53	4.732695e-50
MsG0280007800.01	MsG0480020691.01	0.810020	1.418696e-50	8.458946e-48
MsG0280007831.01	MsG0480020691.01	0.805631	1.216342e-49	6.467074e-47
MsG0280011162.01	MsG0480020691.01	0.814392	1.576967e-51	1.056887e-48
MsG0380012625.01	MsG0480020691.01	0.810370	1.192521e-50	7.175264e-48
MsG0380014470.01	MsG0480020691.01	0.819900	9.108548e-53	7.100348e-50
MsG0380015742.01	MsG0480020691.01	0.808744	2.665041e-50	1.535945e-47
MsG0380015743.01	MsG0480020691.01	0.806330	8.666837e-50	4.691285e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020691.01.T01	MTR_4g057240	94.030	201	5	2	1	195	1	200	2.99e-131	367
MsG0480020691.01.T01	MTR_7g114240	64.384	146	45	2	56	195	3	147	6.68e-59	182
MsG0480020691.01.T01	MTR_6g029200	56.164	146	58	1	56	195	9	154	1.43e-48	155
MsG0480020691.01.T01	MTR_6g029200	58.156	141	51	2	63	195	4	144	1.17e-47	153
MsG0480020691.01.T01	MTR_7g114240	56.863	102	37	2	56	151	3	103	1.65e-31	111

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480020691.01.T01	AT2G28190	69.608	204	50	4	3	195	8	210	4.77e-89	260
MsG0480020691.01.T01	AT1G08830	63.014	146	47	2	56	195	3	147	1.17e-55	173
MsG0480020691.01.T01	AT1G08830	63.014	146	47	2	56	195	3	147	1.17e-55	173
MsG0480020691.01.T01	AT5G18100	56.849	146	56	2	56	195	9	153	3.69e-51	162
MsG0480020691.01.T01	AT5G18100	55.118	127	50	2	56	176	9	134	8.92e-41	135
MsG0480020691.01.T01	AT1G12520	36.441	118	67	5	57	172	28	139	1.82e-11	60.8
MsG0480020691.01.T01	AT1G12520	36.441	118	67	5	57	172	164	275	3.01e-11	61.6
MsG0480020691.01.T01	AT1G12520	36.441	118	67	5	57	172	73	184	6.03e-11	60.1

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Find 63 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTGTTGCTGTTCTTAA+GGG	0.366098	4:-46303874	MsG0480020691.01.T01:CDS
AACATAATTGCTGATGCCAA+CGG	0.589398	4:-46302669	MsG0480020691.01.T01:intron
AACCATGAAGCCCTGGAGTA+AGG	0.443025	4:+46303004	None:intergenic
AACGGAGAGAGGCTTGAAAT+TGG	0.326119	4:+46303912	None:intergenic
AAGAACAGCAACAGCTTTCT+TGG	0.257195	4:+46303879	None:intergenic
AAGGGTAACTCCACTGTTGA+AGG	0.471786	4:-46303856	MsG0480020691.01.T01:CDS
AATCCGTCATGCGGGTGACC+TGG	0.434387	4:-46302694	MsG0480020691.01.T01:CDS
AATCCTAACCAGTTGACACA+CGG	0.627360	4:-46302732	MsG0480020691.01.T01:intron
AATCTTCATGCACCTAACAA+TGG	0.624185	4:-46304046	MsG0480020691.01.T01:exon
ACAGTTAATGTTCGTATCAC+TGG	0.500510	4:-46303027	MsG0480020691.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCAAAATGGAGAATTGAA+CGG	+	Chr4:46302300-46302319	None:intergenic	30.0%
ATACGAACATTAACTGTTGT+TGG	+	Chr4:46303052-46303071	None:intergenic	30.0%
ATGTAAACAAGTATTACCGT+TGG	+	Chr4:46303432-46303451	None:intergenic	30.0%
TTAAGCTCTTTATCCAAACA+TGG	+	Chr4:46302493-46302512	None:intergenic	30.0%
AACATAATTGCTGATGCCAA+CGG	-	Chr4:46303413-46303432	MsG0480020691.01.T01:intron	35.0%
AACTGGTTAGGATTGAAATG+TGG	+	Chr4:46303344-46303363	None:intergenic	35.0%
AATCAAACCGTGGCAAAAAA+TGG	+	Chr4:46303273-46303292	None:intergenic	35.0%
AATCTTCATGCACCTAACAA+TGG	-	Chr4:46302036-46302055	MsG0480020691.01.T01:intron	35.0%
ACAGTTAATGTTCGTATCAC+TGG	-	Chr4:46303055-46303074	MsG0480020691.01.T01:intron	35.0%
ACAGTTAGGTACTTTCAACA+AGG	+	Chr4:46303679-46303698	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	46301960	46304144	46301960	ID=MsG0480020691.01;Name=MsG0480020691.01
Chr4	mRNA	46301960	46304144	46301960	ID=MsG0480020691.01.T01;Parent=MsG0480020691.01;Name=MsG0480020691.01.T01;_AED=0.42;_eAED=0.42;_QI=83\|0.66\|0.42\|1\|0.5\|0.57\|7\|0\|195
Chr4	exon	46301960	46302021	46301960	ID=MsG0480020691.01.T01:exon:7900;Parent=MsG0480020691.01.T01
Chr4	exon	46302308	46302383	46302308	ID=MsG0480020691.01.T01:exon:7899;Parent=MsG0480020691.01.T01
Chr4	exon	46302548	46302579	46302548	ID=MsG0480020691.01.T01:exon:7898;Parent=MsG0480020691.01.T01
Chr4	exon	46302670	46302742	46302670	ID=MsG0480020691.01.T01:exon:7897;Parent=MsG0480020691.01.T01
Chr4	exon	46302853	46302897	46302853	ID=MsG0480020691.01.T01:exon:7896;Parent=MsG0480020691.01.T01
Chr4	exon	46302996	46303060	46302996	ID=MsG0480020691.01.T01:exon:7895;Parent=MsG0480020691.01.T01
Chr4	exon	46303827	46304144	46303827	ID=MsG0480020691.01.T01:exon:7894;Parent=MsG0480020691.01.T01
Chr4	five_prime_UTR	46304062	46304144	46304062	ID=MsG0480020691.01.T01:five_prime_utr;Parent=MsG0480020691.01.T01
Chr4	CDS	46303827	46304061	46303827	ID=MsG0480020691.01.T01:cds;Parent=MsG0480020691.01.T01
Chr4	CDS	46302996	46303060	46302996	ID=MsG0480020691.01.T01:cds;Parent=MsG0480020691.01.T01
Chr4	CDS	46302853	46302897	46302853	ID=MsG0480020691.01.T01:cds;Parent=MsG0480020691.01.T01
Chr4	CDS	46302670	46302742	46302670	ID=MsG0480020691.01.T01:cds;Parent=MsG0480020691.01.T01
Chr4	CDS	46302548	46302579	46302548	ID=MsG0480020691.01.T01:cds;Parent=MsG0480020691.01.T01
Chr4	CDS	46302308	46302383	46302308	ID=MsG0480020691.01.T01:cds;Parent=MsG0480020691.01.T01
Chr4	CDS	46301960	46302021	46301960	ID=MsG0480020691.01.T01:cds;Parent=MsG0480020691.01.T01

Gene Sequence

>MsG0480020691.01.T01

ATGCACCTAACAATGGCGTCACACTCTCTCATGTCACCTTCGCCACTCACTTCTCACTCTCTTCTCCGATCATCTTTCTCCGGCGTCTCCGTCAAGCTCTCTCCTCAATTCTTGACCCTTTCGCGTTCCAATTTCAAGCCTCTCTCCGTTGTTGCTGCTGCCAAGAAAGCTGTTGCTGTTCTTAAGGGTAACTCCACTGTTGAAGGTGTTGTTACTCTTACTCAAGAAAACGAAGTAGGTCCAACAACAGTTAATGTTCGTATCACTGGCCTTACTCCAGGGCTTCATGGTTTTCACCTGCACGAGTATGGTGATACCACCAATGGGTGTATCTCGACAGGTAATTTGACACACGGTGCTCCTGAAGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAATTGCTGATGCCAACGGCGTTGCAGAGGCAACAATCGTTGACAATCAGATACCACTCACTGGCCCCAATTCAGTCATTGGGAGAGCCTTAGTGGTTCATGAGCTTGAAGATGACCTTGGAAAGGGTGGACATGAACTCAGTTTGAGCACTGGAAATGCCGGTGGAAGATTAGCTTGTGGTATGTAG

Protein sequence

>MsG0480020691.01.T01

MHLTMASHSLMSPSPLTSHSLLRSSFSGVSVKLSPQFLTLSRSNFKPLSVVAAAKKAVAVLKGNSTVEGVVTLTQENEVGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGNLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGM*