AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014470.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014470.01.T01 MTR_3g058430 95.213 188 9 0 1 188 1 188 2.03e-115 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014470.01.T01 AT3G13120 64.398 191 65 1 1 188 1 191 5.54e-75 224
MsG0380014470.01.T01 AT3G13120 64.398 191 65 1 1 188 1 191 5.54e-75 224
MsG0380014470.01.T01 AT3G13120 64.398 191 65 1 1 188 1 191 5.54e-75 224

Find 40 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCTTTGTGCTTTGTTTC+TGG 0.060318 3:-55289611 MsG0380014470.01.T01:CDS
ATAAATCCATGTGCATAATT+TGG 0.219282 3:+55286424 None:intergenic
GACACAGTGAATTCGCTTCT+TGG 0.315569 3:+55286868 None:intergenic
ACCTCAGAATTCAAAACTTC+AGG 0.326023 3:+55289527 None:intergenic
TGCATCCAGTATCTGCTTGC+AGG 0.346889 3:+55286937 None:intergenic
GCTCTAAATATATTTGCTTC+AGG 0.347187 3:-55286696 MsG0380014470.01.T01:exon
TGTGTACGTGTGGAGATTTA+AGG 0.348074 3:+55286846 None:intergenic
AAGCACAAAGATTGAAGCTT+TGG 0.358455 3:+55289620 None:intergenic
GGATTCCTGCAAGCAGATAC+TGG 0.366808 3:-55286942 MsG0380014470.01.T01:CDS
TATGCAAATATCTATGTAAC+AGG 0.367005 3:+55286500 None:intergenic
AGATAACAATGGTGAAGAAT+TGG 0.371117 3:+55289649 None:intergenic
GAGCCTAGATGACAACATAA+TGG 0.380501 3:+55286537 None:intergenic
ACAACAGTTGATAACTTAAG+AGG 0.390677 3:+55289560 None:intergenic
CTTCAGAGAGTTTGTTTCAA+TGG 0.392816 3:-55289720 MsG0380014470.01.T01:exon
TTCTTGGTTGGTAAAGGAAC+AGG 0.402200 3:+55286884 None:intergenic
AGACTTACATTACATTGAAT+AGG 0.410551 3:+55286476 None:intergenic
TTCCCATTATGTTGTCATCT+AGG 0.412025 3:-55286540 MsG0380014470.01.T01:three_prime_UTR
GAATCTATTGTTTGTGCTGT+AGG 0.413081 3:+55286764 None:intergenic
TTACTTGGTCCCCTTGATAG+AGG 0.436195 3:-55286963 MsG0380014470.01.T01:CDS
AATCAAGCTTAGATCTTACT+TGG 0.443706 3:-55286978 MsG0380014470.01.T01:CDS
AGCCTAGATGACAACATAAT+GGG 0.446255 3:+55286538 None:intergenic
ATTCGCTTCTTGGTTGGTAA+AGG 0.474280 3:+55286878 None:intergenic
ATGCAGCTTGATCTTCCTGC+TGG 0.477604 3:-55286737 MsG0380014470.01.T01:CDS
GATGAGTTCTGATCTCGAAA+TGG 0.486839 3:+55286810 None:intergenic
CTTGCAGGAATCCTCTATCA+AGG 0.519406 3:+55286952 None:intergenic
CAGTGAATTCGCTTCTTGGT+TGG 0.546112 3:+55286872 None:intergenic
TTGTTTCTGGTAACACGTTG+AGG 0.552159 3:-55289598 MsG0380014470.01.T01:CDS
ACTTCGACATCAACGCCAGC+AGG 0.555474 3:+55286722 None:intergenic
CATTGGGGATAATGCAGACA+TGG 0.557328 3:-55288348 MsG0380014470.01.T01:intron
CACACGTACACAAGGATGCT+CGG 0.558591 3:-55286835 MsG0380014470.01.T01:CDS
TTGGAAGAGACAGAAAGAGA+AGG 0.576021 3:+55289668 None:intergenic
TTGCAGGAATCCTCTATCAA+GGG 0.586905 3:+55286953 None:intergenic
AAAGAAGTACATTCAGAGAG+TGG 0.593670 3:+55286592 None:intergenic
TTTGGCTTTGAAGATAACAA+TGG 0.593808 3:+55289638 None:intergenic
ATTCTTCCAAATTATGCACA+TGG 0.599701 3:-55286430 MsG0380014470.01.T01:three_prime_UTR
CGAGCATCCTTGTGTACGTG+TGG 0.612723 3:+55286836 None:intergenic
TCGACTCATTTGCTATCAGT+AGG 0.618374 3:+55286637 None:intergenic
ATAGCAAATGAGTCGACACT+AGG 0.628086 3:-55286630 MsG0380014470.01.T01:three_prime_UTR
TAAATCTCCACACGTACACA+AGG 0.632451 3:-55286843 MsG0380014470.01.T01:CDS
TGCAGGAATCCTCTATCAAG+GGG 0.633408 3:+55286954 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATATCACATTAATT+CGG + Chr3:55288295-55288314 None:intergenic 10.0%
!!! TTTAAAGAATTTAAAATTCT+AGG - Chr3:55287422-55287441 MsG0380014470.01.T01:intron 10.0%
!! AAAAAAAATGCATTAAAATC+TGG + Chr3:55288744-55288763 None:intergenic 15.0%
!! AAAATATATCACATTAATTC+GGG + Chr3:55288294-55288313 None:intergenic 15.0%
!! AACAGTGAAATAATAAAATA+AGG + Chr3:55288467-55288486 None:intergenic 15.0%
!! TTATATGTAGTTTAATATGT+TGG - Chr3:55287636-55287655 MsG0380014470.01.T01:intron 15.0%
!!! GAATATTGATTTTGTTTAAT+TGG - Chr3:55286742-55286761 MsG0380014470.01.T01:CDS 15.0%
!!! TATTTTATTATTTCACTGTT+TGG - Chr3:55288467-55288486 MsG0380014470.01.T01:intron 15.0%
!! AATCTGATTTATATTTGGAT+GGG - Chr3:55286994-55287013 MsG0380014470.01.T01:CDS 20.0%
!! AATGCAATCTGATTTATATT+TGG - Chr3:55286989-55287008 MsG0380014470.01.T01:CDS 20.0%
!! ACATATTAAATGACTGAAAA+TGG + Chr3:55287926-55287945 None:intergenic 20.0%
!! ATGAATGAAAATGAAGAAAA+GGG + Chr3:55286693-55286712 None:intergenic 20.0%
!! TGAACATATGAAAAACAATA+GGG - Chr3:55287350-55287369 MsG0380014470.01.T01:intron 20.0%
!! TTGAACATATGAAAAACAAT+AGG - Chr3:55287349-55287368 MsG0380014470.01.T01:intron 20.0%
!!! ATTGATTTTGTTTAATTGGT+TGG - Chr3:55286746-55286765 MsG0380014470.01.T01:CDS 20.0%
!!! GCTTAAAGTTAGTATAATTT+TGG - Chr3:55287081-55287100 MsG0380014470.01.T01:intron 20.0%
!!! TAAAGTTAGTATAATTTTGG+AGG - Chr3:55287084-55287103 MsG0380014470.01.T01:intron 20.0%
!!! TTTTCAATCTATTCTTACAT+AGG - Chr3:55287267-55287286 MsG0380014470.01.T01:intron 20.0%
! AACTTTAAGCTAGAATTTGA+AGG + Chr3:55287071-55287090 None:intergenic 25.0%
! AAGAATGAAAACAGCTAAAT+AGG + Chr3:55288561-55288580 None:intergenic 25.0%
! AGAATGAAAACAGCTAAATA+GGG + Chr3:55288560-55288579 None:intergenic 25.0%
! AGACTTACATTACATTGAAT+AGG + Chr3:55289694-55289713 None:intergenic 25.0%
! AGCTTACATTGTTAATGAAA+AGG - Chr3:55288416-55288435 MsG0380014470.01.T01:intron 25.0%
! ATAAATCCATGTGCATAATT+TGG + Chr3:55289746-55289765 None:intergenic 25.0%
! ATGTAATAGCAATGAAATCA+TGG - Chr3:55287942-55287961 MsG0380014470.01.T01:intron 25.0%
! ATTCATGTTTGTATTGTGTT+TGG - Chr3:55286707-55286726 MsG0380014470.01.T01:exon 25.0%
! CAATCTGATTTATATTTGGA+TGG - Chr3:55286993-55287012 MsG0380014470.01.T01:CDS 25.0%
! CATGAATGAAAATGAAGAAA+AGG + Chr3:55286694-55286713 None:intergenic 25.0%
! GAACATATGAAAAACAATAG+GGG - Chr3:55287351-55287370 MsG0380014470.01.T01:intron 25.0%
! TATGCAAATATCTATGTAAC+AGG + Chr3:55289670-55289689 None:intergenic 25.0%
! TCAAACATTTAGAAAAACGT+AGG + Chr3:55287712-55287731 None:intergenic 25.0%
! TCTTTGTGATAAAAATGTCT+TGG - Chr3:55287749-55287768 MsG0380014470.01.T01:intron 25.0%
! TGTAATAGCAATGAAATCAT+GGG - Chr3:55287943-55287962 MsG0380014470.01.T01:intron 25.0%
! TGTTTGATAAGTCAAGTAAT+AGG - Chr3:55288102-55288121 MsG0380014470.01.T01:intron 25.0%
! TTACAAATTGAGTGTATGTT+TGG + Chr3:55288078-55288097 None:intergenic 25.0%
!! ATAATGGGAAAGCTAAAAAA+GGG + Chr3:55289617-55289636 None:intergenic 25.0%
!! GAGTTAACTGATGATTTTTA+TGG - Chr3:55289055-55289074 MsG0380014470.01.T01:intron 25.0%
!! GGTTTATATTTGTTTGCTTT+TGG - Chr3:55287873-55287892 MsG0380014470.01.T01:intron 25.0%
!! TTTTTCATCCAAAAAATCGA+AGG - Chr3:55288389-55288408 MsG0380014470.01.T01:CDS 25.0%
!!! AAAAATGTCTTGGTGTTTTT+AGG - Chr3:55287759-55287778 MsG0380014470.01.T01:intron 25.0%
!!! AATTTTGGCTTATGTAAAAG+TGG - Chr3:55286939-55286958 MsG0380014470.01.T01:CDS 25.0%
!!! ATTTTGGCTTATGTAAAAGT+GGG - Chr3:55286940-55286959 MsG0380014470.01.T01:CDS 25.0%
!!! GATTTGCTATTTTCAATAGT+TGG - Chr3:55287852-55287871 MsG0380014470.01.T01:intron 25.0%
!!! TAAACTGATTTGATCATGTT+TGG + Chr3:55286908-55286927 None:intergenic 25.0%
!!! TGTTTCTTCGAATTTTTAGA+TGG - Chr3:55289147-55289166 MsG0380014470.01.T01:intron 25.0%
!!! TTATATTTGTTTGCTTTTGG+AGG - Chr3:55287876-55287895 MsG0380014470.01.T01:intron 25.0%
!!! TTTACCTCTAGAATCAATTT+TGG - Chr3:55286924-55286943 MsG0380014470.01.T01:CDS 25.0%
!!! TTTTTTGGATGAAAAAGTGA+TGG + Chr3:55288385-55288404 None:intergenic 25.0%
AACTACCAATGCAAAAACAA+TGG - Chr3:55289258-55289277 MsG0380014470.01.T01:intron 30.0%
AAGCTAAAAAAGGGATCATT+TGG + Chr3:55289608-55289627 None:intergenic 30.0%
AATAAGGTGCATATAGAGTA+AGG + Chr3:55288601-55288620 None:intergenic 30.0%
AATCAAGCTTAGATCTTACT+TGG - Chr3:55289189-55289208 MsG0380014470.01.T01:intron 30.0%
AATCCAATGTTTCAGAAGAA+TGG + Chr3:55288650-55288669 None:intergenic 30.0%
AATGTTTCAGAAGAATGGAT+GGG + Chr3:55288645-55288664 None:intergenic 30.0%
AATTGAGTGTATGTTTGGAT+TGG + Chr3:55288073-55288092 None:intergenic 30.0%
ACTACCAATGCAAAAACAAT+GGG - Chr3:55289259-55289278 MsG0380014470.01.T01:intron 30.0%
AGAGTTCACAGATAAGTTAT+AGG + Chr3:55289101-55289120 None:intergenic 30.0%
AGATAACAATGGTGAAGAAT+TGG + Chr3:55286521-55286540 None:intergenic 30.0%
ATGTTTGAACTCAATTCAGT+TGG - Chr3:55287724-55287743 MsG0380014470.01.T01:intron 30.0%
ATTCTTCCAAATTATGCACA+TGG - Chr3:55289737-55289756 MsG0380014470.01.T01:five_prime_UTR 30.0%
GAGGAAATGTAATGTTATGA+GGG + Chr3:55287473-55287492 None:intergenic 30.0%
GCATAAAAGCAATGAATTTG+AGG - Chr3:55287020-55287039 MsG0380014470.01.T01:intron 30.0%
GGTAATAAAAAAGAGGGAAA+AGG - Chr3:55288932-55288951 MsG0380014470.01.T01:intron 30.0%
TACTCTATATGCACCTTATT+TGG - Chr3:55288601-55288620 MsG0380014470.01.T01:intron 30.0%
TGAGGAAATGTAATGTTATG+AGG + Chr3:55287474-55287493 None:intergenic 30.0%
TGATAAAGCCAAACCAAATA+AGG + Chr3:55288617-55288636 None:intergenic 30.0%
TGTAAATGAAAAAGCCGAAA+GGG + Chr3:55288537-55288556 None:intergenic 30.0%
TGTTAATGAAAAGGAACTGA+AGG - Chr3:55288425-55288444 MsG0380014470.01.T01:intron 30.0%
TTCGTGAATATGAATTTCAC+TGG - Chr3:55287659-55287678 MsG0380014470.01.T01:intron 30.0%
! AGCTTTTACCTTCGATTTTT+TGG + Chr3:55288400-55288419 None:intergenic 30.0%
! CATAATGGGAAAGCTAAAAA+AGG + Chr3:55289618-55289637 None:intergenic 30.0%
! CTTAGTTCTTAGTGAATGTT+TGG + Chr3:55287219-55287238 None:intergenic 30.0%
! GCTCTAAATATATTTGCTTC+AGG - Chr3:55289471-55289490 MsG0380014470.01.T01:intron 30.0%
! TAAGCCAAAATTGATTCTAG+AGG + Chr3:55286931-55286950 None:intergenic 30.0%
! TATATGCACCTTATTTGGTT+TGG - Chr3:55288606-55288625 MsG0380014470.01.T01:intron 30.0%
! TGAGCTAAAACTGATTTCAA+AGG + Chr3:55287183-55287202 None:intergenic 30.0%
! TTGATTCTGATTTTCTGCTT+TGG + Chr3:55289175-55289194 None:intergenic 30.0%
!! ACAACAGTTGATAACTTAAG+AGG + Chr3:55286610-55286629 None:intergenic 30.0%
!! AGCAATGTTACGTTTTAGAT+TGG - Chr3:55287686-55287705 MsG0380014470.01.T01:intron 30.0%
!! TTCTTCTGAAACATTGGATT+TGG - Chr3:55288650-55288669 MsG0380014470.01.T01:intron 30.0%
!! TTTGGCTTTGAAGATAACAA+TGG + Chr3:55286532-55286551 None:intergenic 30.0%
!!! AGTTTTAGCTCATGTAAAAG+TGG - Chr3:55287191-55287210 MsG0380014470.01.T01:intron 30.0%
!!! TTTTGGCTTATGTAAAAGTG+GGG - Chr3:55286941-55286960 MsG0380014470.01.T01:CDS 30.0%
AAAGGGTAAGTGAAAGACTT+TGG + Chr3:55288520-55288539 None:intergenic 35.0%
AAGCACAAAGATTGAAGCTT+TGG + Chr3:55286550-55286569 None:intergenic 35.0%
AAGGGTAAGTGAAAGACTTT+GGG + Chr3:55288519-55288538 None:intergenic 35.0%
AAGTCTTTCACTTACCCTTT+CGG - Chr3:55288520-55288539 MsG0380014470.01.T01:intron 35.0%
ACCTCAGAATTCAAAACTTC+AGG + Chr3:55286643-55286662 None:intergenic 35.0%
AGCACGTCAAAAATTAGCAT+TGG - Chr3:55287802-55287821 MsG0380014470.01.T01:intron 35.0%
AGCCTAGATGACAACATAAT+GGG + Chr3:55289632-55289651 None:intergenic 35.0%
CAATGTTTCAGAAGAATGGA+TGG + Chr3:55288646-55288665 None:intergenic 35.0%
CACGTCAAAAATTAGCATTG+GGG - Chr3:55287804-55287823 MsG0380014470.01.T01:intron 35.0%
CCTGAGGGTAATAAAAAAGA+GGG - Chr3:55288926-55288945 MsG0380014470.01.T01:intron 35.0%
GAATCTATTGTTTGTGCTGT+AGG + Chr3:55289406-55289425 None:intergenic 35.0%
GAGGGAATGTAATGTTATGA+GGG + Chr3:55287554-55287573 None:intergenic 35.0%
GAGGGAATTCAAATACTTTG+AGG + Chr3:55287455-55287474 None:intergenic 35.0%
GCACGTCAAAAATTAGCATT+GGG - Chr3:55287803-55287822 MsG0380014470.01.T01:intron 35.0%
GGGAATGTAATGTAATGTTG+AGG + Chr3:55287492-55287511 None:intergenic 35.0%
GTGAATTCCATTGTTTGGAT+GGG + Chr3:55287514-55287533 None:intergenic 35.0%
GTGTAAATGAAAAAGCCGAA+AGG + Chr3:55288538-55288557 None:intergenic 35.0%
GTTTCAGAACAAGGTTACAT+TGG - Chr3:55288188-55288207 MsG0380014470.01.T01:intron 35.0%
TACATAGGTAATGAGTACCT+AGG - Chr3:55287282-55287301 MsG0380014470.01.T01:intron 35.0%
TAGTCATCATCCAATTTCCA+TGG - Chr3:55289008-55289027 MsG0380014470.01.T01:intron 35.0%
TATGGCATAGTTTCAGAACA+AGG - Chr3:55288179-55288198 MsG0380014470.01.T01:intron 35.0%
TCAAAAACCTGTGTTTGGAT+GGG + Chr3:55287587-55287606 None:intergenic 35.0%
TCCAAACACACTCTAAATTC+TGG + Chr3:55287385-55287404 None:intergenic 35.0%
TCCTGAGGGTAATAAAAAAG+AGG - Chr3:55288925-55288944 MsG0380014470.01.T01:intron 35.0%
TGAATTCCATTGTTTGGATG+GGG + Chr3:55287513-55287532 None:intergenic 35.0%
TGAGGGAATGTAATGTTATG+AGG + Chr3:55287555-55287574 None:intergenic 35.0%
TGTGTTTGGATGAGGTAATT+TGG - Chr3:55287395-55287414 MsG0380014470.01.T01:intron 35.0%
TTCCCATTATGTTGTCATCT+AGG - Chr3:55289627-55289646 MsG0380014470.01.T01:CDS 35.0%
TTGAGGTGAATTCCATTGTT+TGG + Chr3:55287519-55287538 None:intergenic 35.0%
! AAAGAAGTACATTCAGAGAG+TGG + Chr3:55289578-55289597 None:intergenic 35.0%
! ACTATGCCATACTTTTGACA+AGG + Chr3:55288170-55288189 None:intergenic 35.0%
! ACTGCAATTTTGCCAAATCA+TGG - Chr3:55288019-55288038 MsG0380014470.01.T01:intron 35.0%
! ATGATTTGGCAAAATTGCAG+TGG + Chr3:55288020-55288039 None:intergenic 35.0%
! ATGCTAATTTTTGACGTGCT+TGG + Chr3:55287802-55287821 None:intergenic 35.0%
! ATTTAGAGTGTGTTTGGATG+AGG - Chr3:55287387-55287406 MsG0380014470.01.T01:intron 35.0%
! CTAGGAATTTTCTCAATGCT+TGG - Chr3:55287300-55287319 MsG0380014470.01.T01:intron 35.0%
! CTATGCCATACTTTTGACAA+GGG + Chr3:55288169-55288188 None:intergenic 35.0%
! CTTCAGAGAGTTTGTTTCAA+TGG - Chr3:55286447-55286466 MsG0380014470.01.T01:three_prime_UTR 35.0%
! TCCAGAATTTAGAGTGTGTT+TGG - Chr3:55287381-55287400 MsG0380014470.01.T01:intron 35.0%
! TTAGTGCATCTTTGGATTAG+CGG - Chr3:55287971-55287990 MsG0380014470.01.T01:intron 35.0%
!! AGCTGTTTTCATTCTTCTGA+GGG - Chr3:55288565-55288584 MsG0380014470.01.T01:intron 35.0%
!! CAAGCATTGAGAAAATTCCT+AGG + Chr3:55287302-55287321 None:intergenic 35.0%
!! CAATCTTTGTGCTTTGTTTC+TGG - Chr3:55286556-55286575 MsG0380014470.01.T01:three_prime_UTR 35.0%
!! CATCCATTCTTCTGAAACAT+TGG - Chr3:55288644-55288663 MsG0380014470.01.T01:intron 35.0%
!! TAGCTGTTTTCATTCTTCTG+AGG - Chr3:55288564-55288583 MsG0380014470.01.T01:intron 35.0%
!! TTTTGGAGGCTTCTTATATG+TGG - Chr3:55287890-55287909 MsG0380014470.01.T01:intron 35.0%
!!! GTGTTTTTAGGTTGATGACT+TGG - Chr3:55287771-55287790 MsG0380014470.01.T01:intron 35.0%
!!! TCCTGAAGTTTTGAATTCTG+AGG - Chr3:55286639-55286658 MsG0380014470.01.T01:three_prime_UTR 35.0%
AAAAACCTGTGTTTGGATGG+GGG + Chr3:55287585-55287604 None:intergenic 40.0%
AATCCAAATCCCTGAAACAC+AGG - Chr3:55288878-55288897 MsG0380014470.01.T01:intron 40.0%
ACCACTGGATAGAAATCAGA+CGG + Chr3:55288804-55288823 None:intergenic 40.0%
AGGCTAAGAATCAATCGTAG+AGG - Chr3:55287040-55287059 MsG0380014470.01.T01:intron 40.0%
ATAGCAAATGAGTCGACACT+AGG - Chr3:55289537-55289556 MsG0380014470.01.T01:CDS 40.0%
ATGCTCCCTTGTCAAAAGTA+TGG - Chr3:55288161-55288180 MsG0380014470.01.T01:intron 40.0%
ATGTTTCACTGCTGAGTAAC+TGG + Chr3:55288141-55288160 None:intergenic 40.0%
CAAAAACCTGTGTTTGGATG+GGG + Chr3:55287586-55287605 None:intergenic 40.0%
CCAATTTCCATGGAAAAGTG+AGG - Chr3:55289018-55289037 MsG0380014470.01.T01:intron 40.0%
CTCAAAAACCTGTGTTTGGA+TGG + Chr3:55287588-55287607 None:intergenic 40.0%
GAATTCCATTGTTTGGATGG+GGG + Chr3:55287512-55287531 None:intergenic 40.0%
GAGCCTAGATGACAACATAA+TGG + Chr3:55289633-55289652 None:intergenic 40.0%
GGTGAATTCCATTGTTTGGA+TGG + Chr3:55287515-55287534 None:intergenic 40.0%
TAAATCTCCACACGTACACA+AGG - Chr3:55289324-55289343 MsG0380014470.01.T01:intron 40.0%
TGAGTTAGGCAAAATCACAC+TGG + Chr3:55288047-55288066 None:intergenic 40.0%
TGTGTACGTGTGGAGATTTA+AGG + Chr3:55289324-55289343 None:intergenic 40.0%
TTGCAGGAATCCTCTATCAA+GGG + Chr3:55289217-55289236 None:intergenic 40.0%
TTGGAAGAGACAGAAAGAGA+AGG + Chr3:55286502-55286521 None:intergenic 40.0%
! GATGAGTTCTGATCTCGAAA+TGG + Chr3:55289360-55289379 None:intergenic 40.0%
! TGAGTGTATGTTTGGATTGG+CGG + Chr3:55288070-55288089 None:intergenic 40.0%
!! ATTCGCTTCTTGGTTGGTAA+AGG + Chr3:55289292-55289311 None:intergenic 40.0%
!! CCAAACACAGGTTTTTGAGA+CGG - Chr3:55287589-55287608 MsG0380014470.01.T01:intron 40.0%
!! CCTCACTTTTCCATGGAAAT+TGG + Chr3:55289021-55289040 None:intergenic 40.0%
!! GGGACATTTTAGTGCATCTT+TGG - Chr3:55287963-55287982 MsG0380014470.01.T01:intron 40.0%
!! TCGACTCATTTGCTATCAGT+AGG + Chr3:55289533-55289552 None:intergenic 40.0%
!! TTCTACTCCTCACTTTTCCA+TGG + Chr3:55289028-55289047 None:intergenic 40.0%
!! TTCTTGGTTGGTAAAGGAAC+AGG + Chr3:55289286-55289305 None:intergenic 40.0%
!! TTGTTTCTGGTAACACGTTG+AGG - Chr3:55286569-55286588 MsG0380014470.01.T01:three_prime_UTR 40.0%
!!! AGGACCCATTGTTTTTGCAT+TGG + Chr3:55289266-55289285 None:intergenic 40.0%
!!! AGGTTTTTGAGACGGTGTAA+AGG - Chr3:55287597-55287616 MsG0380014470.01.T01:intron 40.0%
!!! CCCTCTTTTTTATTACCCTC+AGG + Chr3:55288929-55288948 None:intergenic 40.0%
!!! GGTTTTTGAGACGGTGTAAA+GGG - Chr3:55287598-55287617 MsG0380014470.01.T01:intron 40.0%
!!! GTTTTTGAGACGGTGTAAAG+GGG - Chr3:55287599-55287618 MsG0380014470.01.T01:intron 40.0%
ACATTCCCCCATCCAAACAA+TGG - Chr3:55287504-55287523 MsG0380014470.01.T01:intron 45.0%
ACCGTCTGATTTCTATCCAG+TGG - Chr3:55288800-55288819 MsG0380014470.01.T01:intron 45.0%
ATCACACTATGTGGTTCCTG+AGG - Chr3:55288910-55288929 MsG0380014470.01.T01:intron 45.0%
ATCACACTGGCACCATGATT+TGG + Chr3:55288034-55288053 None:intergenic 45.0%
CAGTGAATTCGCTTCTTGGT+TGG + Chr3:55289298-55289317 None:intergenic 45.0%
CATTGGGGATAATGCAGACA+TGG - Chr3:55287819-55287838 MsG0380014470.01.T01:intron 45.0%
CCACATAGTGTGATTGCACA+AGG + Chr3:55288904-55288923 None:intergenic 45.0%
CCGTCTCAAAAACCTGTGTT+TGG + Chr3:55287592-55287611 None:intergenic 45.0%
CCTTGTGCAATCACACTATG+TGG - Chr3:55288901-55288920 MsG0380014470.01.T01:intron 45.0%
CTTGCAGGAATCCTCTATCA+AGG + Chr3:55289218-55289237 None:intergenic 45.0%
GACACAGTGAATTCGCTTCT+TGG + Chr3:55289302-55289321 None:intergenic 45.0%
TCACACTATGTGGTTCCTGA+GGG - Chr3:55288911-55288930 MsG0380014470.01.T01:intron 45.0%
TGCAGGAATCCTCTATCAAG+GGG + Chr3:55289216-55289235 None:intergenic 45.0%
TTACTTGGTCCCCTTGATAG+AGG - Chr3:55289204-55289223 MsG0380014470.01.T01:intron 45.0%
! AGTGTTGGATCGAGACTAGA+CGG - Chr3:55288717-55288736 MsG0380014470.01.T01:intron 45.0%
! TTGGATGGGGGAATGTTTTG+AGG + Chr3:55287573-55287592 None:intergenic 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG + Chr3:55287572-55287591 None:intergenic 45.0%
ACATTCCCCCATCCAAACAC+AGG - Chr3:55287577-55287596 MsG0380014470.01.T01:intron 50.0%
AGGCCTGTGTTTCAGGGATT+TGG + Chr3:55288884-55288903 None:intergenic 50.0%
AGTCATGGTCTCATGGACGT+AGG + Chr3:55288829-55288848 None:intergenic 50.0%
ATGCAGCTTGATCTTCCTGC+TGG - Chr3:55289430-55289449 MsG0380014470.01.T01:intron 50.0%
CACACGTACACAAGGATGCT+CGG - Chr3:55289332-55289351 MsG0380014470.01.T01:intron 50.0%
GGATTCCTGCAAGCAGATAC+TGG - Chr3:55289225-55289244 MsG0380014470.01.T01:intron 50.0%
TCATGGACGTAGGTAACCAC+TGG + Chr3:55288819-55288838 None:intergenic 50.0%
TCCACACATTCACGCAGTCT+GGG - Chr3:55288685-55288704 MsG0380014470.01.T01:intron 50.0%
TGCACAAGGCCTGTGTTTCA+GGG + Chr3:55288890-55288909 None:intergenic 50.0%
TGCATCCAGTATCTGCTTGC+AGG + Chr3:55289233-55289252 None:intergenic 50.0%
TTCACGCAGTCATGGTCTCA+TGG + Chr3:55288836-55288855 None:intergenic 50.0%
TTCCACACATTCACGCAGTC+TGG - Chr3:55288684-55288703 MsG0380014470.01.T01:intron 50.0%
TTGCACAAGGCCTGTGTTTC+AGG + Chr3:55288891-55288910 None:intergenic 50.0%
TTTGGATTTGACGCTGTCCG+CGG + Chr3:55288866-55288885 None:intergenic 50.0%
! ATTCACGCAGTCTGGGATGT+CGG - Chr3:55288692-55288711 MsG0380014470.01.T01:intron 50.0%
!! GTTTGGATTGGCGGTGAGTT+AGG + Chr3:55288061-55288080 None:intergenic 50.0%
ACTTCGACATCAACGCCAGC+AGG + Chr3:55289448-55289467 None:intergenic 55.0%
CGAGCATCCTTGTGTACGTG+TGG + Chr3:55289334-55289353 None:intergenic 55.0%
GGTGCACATTCACGCAGTCA+TGG + Chr3:55288844-55288863 None:intergenic 55.0%
TCCCAGACTGCGTGAATGTG+TGG + Chr3:55288689-55288708 None:intergenic 55.0%
TTGGATTTGACGCTGTCCGC+GGG + Chr3:55288865-55288884 None:intergenic 55.0%
! TCTGGGATGTCGGTGAGTGT+TGG - Chr3:55288702-55288721 MsG0380014470.01.T01:intron 55.0%
ACTGCGTGAATGTGCACCCG+CGG - Chr3:55288846-55288865 MsG0380014470.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 55286407 55289782 55286407 ID=MsG0380014470.01;Name=MsG0380014470.01
Chr3 mRNA 55286407 55289782 55286407 ID=MsG0380014470.01.T01;Parent=MsG0380014470.01;Name=MsG0380014470.01.T01;_AED=0.46;_eAED=0.46;_QI=59|1|1|1|1|1|3|305|188
Chr3 exon 55286407 55287023 55286407 ID=MsG0380014470.01.T01:exon:9695;Parent=MsG0380014470.01.T01
Chr3 exon 55288349 55288408 55288349 ID=MsG0380014470.01.T01:exon:9694;Parent=MsG0380014470.01.T01
Chr3 exon 55289529 55289782 55289529 ID=MsG0380014470.01.T01:exon:9693;Parent=MsG0380014470.01.T01
Chr3 five_prime_UTR 55289724 55289782 55289724 ID=MsG0380014470.01.T01:five_prime_utr;Parent=MsG0380014470.01.T01
Chr3 CDS 55289529 55289723 55289529 ID=MsG0380014470.01.T01:cds;Parent=MsG0380014470.01.T01
Chr3 CDS 55288349 55288408 55288349 ID=MsG0380014470.01.T01:cds;Parent=MsG0380014470.01.T01
Chr3 CDS 55286712 55287023 55286712 ID=MsG0380014470.01.T01:cds;Parent=MsG0380014470.01.T01
Chr3 three_prime_UTR 55286407 55286711 55286407 ID=MsG0380014470.01.T01:three_prime_utr;Parent=MsG0380014470.01.T01
Gene Sequence

>MsG0380014470.01.T01

ATGGCAGTTTCATCTCTCTCAGCAACATTCATTCCTTCTCTTTCTGTCTCTTCCAATTCTTCACCATTGTTATCTTCAAAGCCAAAGCTTCAATCTTTGTGCTTTGTTTCTGGTAACACGTTGAGGATTACAAATGCGAAACCTCTTAAGTTATCAACTGTTGTTCATGCTGCTCCTGAAGTTTTGAATTCTGAGGTTGATGACTTGGAGACTCCAAGCACGTCAAAAATTAGCATTGGGGATAATGCAGACATGATGGCACCAAAGCAGAAAATCAGAATCAAGCTTAGATCTTACTTGGTCCCCTTGATAGAGGATTCCTGCAAGCAGATACTGGATGCAGCAAGAACTACCAATGCAAAAACAATGGGTCCTGTTCCTTTACCAACCAAGAAGCGAATTCACTGTGTCCTTAAATCTCCACACGTACACAAGGATGCTCGGTTCCATTTCGAGATCAGAACTCATCAGCGTGTCATTGATATTCTGTTTCCTACAGCACAAACAATAGATTCTCTTATGCAGCTTGATCTTCCTGCTGGCGTTGATGTCGAAGTCAAGCTCTAA

Protein sequence

>MsG0380014470.01.T01

MAVSSLSATFIPSLSVSSNSSPLLSSKPKLQSLCFVSGNTLRITNAKPLKLSTVVHAAPEVLNSEVDDLETPSTSKISIGDNADMMAPKQKIRIKLRSYLVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRVIDILFPTAQTIDSLMQLDLPAGVDVEVKL*