AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015742.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015742.01.T01 MTR_3g075540 70.476 105 7 2 12 115 81 162 1.61e-42 143
MsG0380015742.01.T01 MTR_3g075540 58.716 109 29 4 61 166 195 290 1.43e-29 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015742.01.T01 AT4G24750 50.485 103 29 1 12 114 83 163 5.09e-29 108

Find 78 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCGTGAATGTTAATATTT+TGG 0.135905 3:+74515667 MsG0380015742.01.T01:three_prime_UTR
GTTGCCGATGCATTATTTAT+TGG 0.202866 3:+74515310 MsG0380015742.01.T01:CDS
TTCTGAAATTTATGTTATAA+TGG 0.206894 3:+74515538 MsG0380015742.01.T01:three_prime_UTR
TTTATTGGCGCTCAGCAAAT+TGG 0.243390 3:+74515325 MsG0380015742.01.T01:CDS
ATGGGCTGTGGTCCTAGTTT+AGG 0.306364 3:+74515581 MsG0380015742.01.T01:three_prime_UTR
TGCTGCAGCCAAGGAAGGTT+GGG 0.307164 3:+74515164 MsG0380015742.01.T01:CDS
ATACATCCTTTGATGCTTAG+AGG 0.316242 3:-74515936 None:intergenic
TTACTGCTGTGGATAAATTA+AGG 0.323162 3:+74515766 MsG0380015742.01.T01:three_prime_UTR
TCTGAAATTTATGTTATAAT+GGG 0.323374 3:+74515539 MsG0380015742.01.T01:three_prime_UTR
ATCATAAATCCAAGTTTAGA+TGG 0.340417 3:+74515562 MsG0380015742.01.T01:three_prime_UTR
CCATCATCGACATTGAATAT+TGG 0.361064 3:-74513293 None:intergenic
ATATGTGCAAGTGCAATATA+TGG 0.362737 3:-74512939 None:intergenic
GCAAATTGGGCGCTATCTTC+AGG 0.376324 3:+74515339 MsG0380015742.01.T01:CDS
TCAAGATGAAGAAAACAAAA+TGG 0.377354 3:+74516008 MsG0380015742.01.T01:three_prime_UTR
TATTATCACATACAAGAGTT+TGG 0.382772 3:-74515641 None:intergenic
TAGGACCCATTGAGATACTA+TGG 0.384413 3:+74515366 MsG0380015742.01.T01:exon
AAAAGCAAGAGCTGCGTCAT+AGG 0.393128 3:-74512905 None:intergenic
ACAAGCCCCTTCTTGATGTT+CGG 0.399756 3:+74512857 MsG0380015742.01.T01:CDS
TTATTGGCGCTCAGCAAATT+GGG 0.419491 3:+74515326 MsG0380015742.01.T01:CDS
TCTGTATCCCCAACCTTCCT+TGG 0.420887 3:-74515172 None:intergenic
CTGCTGCAGCCAAGGAAGGT+TGG 0.434380 3:+74515163 MsG0380015742.01.T01:CDS
CTGCATATCCAGCTTCCCTT+GGG 0.434527 3:-74512823 None:intergenic
GGCGCTATCTTCAGGAGATT+AGG 0.442319 3:+74515347 MsG0380015742.01.T01:CDS
ACTGCATATCCAGCTTCCCT+TGG 0.444447 3:-74512824 None:intergenic
TTTGAGTTATTGATTTATCC+TGG 0.447854 3:+74515394 MsG0380015742.01.T01:three_prime_UTR
GACATTGAATATTGGAATCC+AGG 0.449682 3:-74513285 None:intergenic
ATGTAACCATAGTATCTCAA+TGG 0.458243 3:-74515372 None:intergenic
GTTCTTACCCCAAGGGAAGC+TGG 0.464181 3:+74512815 MsG0380015742.01.T01:CDS
TTAATTTATCCACAGCAGTA+AGG 0.474148 3:-74515764 None:intergenic
GTTTAGTTAGATTTATCAGC+AGG 0.481873 3:+74515511 MsG0380015742.01.T01:three_prime_UTR
ATAAACCTTGTTGTGTTTCG+AGG 0.488798 3:-74512882 None:intergenic
CCAATATTCAATGTCGATGA+TGG 0.493249 3:+74513293 MsG0380015742.01.T01:CDS
TGTCAGAGGCTTATTGCCCA+TGG 0.497910 3:+74515489 MsG0380015742.01.T01:three_prime_UTR
TGTAACCATAGTATCTCAAT+GGG 0.513701 3:-74515371 None:intergenic
ACAAAGAGCTGCTGCAGCCA+AGG 0.514373 3:+74515155 MsG0380015742.01.T01:CDS
GACCACAGCCCATCTAAACT+TGG 0.525564 3:-74515571 None:intergenic
TAATTTATCCACAGCAGTAA+GGG 0.530606 3:-74515763 None:intergenic
CAAGAGCCTCTAAGCATCAA+AGG 0.532933 3:+74515930 MsG0380015742.01.T01:three_prime_UTR
TAGATGTTGGAACCATTCCC+AGG 0.536270 3:+74513318 MsG0380015742.01.T01:CDS
GCAACAATATAATCACAGTT+CGG 0.537024 3:-74515730 None:intergenic
TAAACCTTGTTGTGTTTCGA+GGG 0.537823 3:-74512881 None:intergenic
CACTATTAGTGCATAGCACA+TGG 0.537911 3:-74515610 None:intergenic
TGTTATGAACAGGAGGTTGG+TGG 0.549582 3:+74513429 MsG0380015742.01.T01:intron
CGAGGGGCCGAACATCAAGA+AGG 0.550032 3:-74512864 None:intergenic
GTCGATGATGGTCTAGATGT+TGG 0.552986 3:+74513305 MsG0380015742.01.T01:CDS
ATAAATTAAGGTATTGATGT+GGG 0.553480 3:+74515778 MsG0380015742.01.T01:three_prime_UTR
TGATAAATCTAACTAAACCA+TGG 0.563562 3:-74515506 None:intergenic
CAATAAGCCTCTGACAAGGC+CGG 0.565278 3:-74515482 None:intergenic
CATGGGTGAAAGGTTCAACC+TGG 0.567974 3:+74513267 MsG0380015742.01.T01:CDS
AGAGCTGCTGCAGCCAAGGA+AGG 0.571203 3:+74515159 MsG0380015742.01.T01:CDS
AGCGCCAATAAATAATGCAT+CGG 0.573957 3:-74515314 None:intergenic
TGAACAGGAGGTTGGTGGAG+TGG 0.574736 3:+74513434 MsG0380015742.01.T01:intron
ATCCAAGTTTAGATGGGCTG+TGG 0.576133 3:+74515569 MsG0380015742.01.T01:three_prime_UTR
TTGAATGCCGGCCTTGTCAG+AGG 0.576951 3:+74515475 MsG0380015742.01.T01:three_prime_UTR
AAATTAAGGTTCTTACCCCA+AGG 0.581254 3:+74512807 MsG0380015742.01.T01:CDS
AAGAAACGAAAATCTTCACT+TGG 0.581355 3:-74512210 None:intergenic
TCATAAATCCAAGTTTAGAT+GGG 0.585669 3:+74515563 MsG0380015742.01.T01:three_prime_UTR
CAAGGAACATTGTCTACACC+AGG 0.587972 3:-74515412 None:intergenic
GATAAATCTAACTAAACCAT+GGG 0.590610 3:-74515505 None:intergenic
GAGGGGCCGAACATCAAGAA+GGG 0.590629 3:-74512863 None:intergenic
ACATGGAAGAAACCTAAACT+AGG 0.593770 3:-74515593 None:intergenic
GCTGCAGCCAAGGAAGGTTG+GGG 0.594915 3:+74515165 MsG0380015742.01.T01:CDS
AATTAAGGTTCTTACCCCAA+GGG 0.596376 3:+74512808 MsG0380015742.01.T01:CDS
GCGAAAATAACAAAACTGAA+AGG 0.608201 3:-74515964 None:intergenic
TGATGTTATGAACAGGAGGT+TGG 0.608404 3:+74513426 MsG0380015742.01.T01:intron
AAGCATCAAAGGATGTATGT+TGG 0.608824 3:+74515941 MsG0380015742.01.T01:three_prime_UTR
AACAGAAACCCTTACTGCTG+TGG 0.616231 3:+74515755 MsG0380015742.01.T01:three_prime_UTR
CGGCCCCTCGAAACACAACA+AGG 0.625163 3:+74512877 MsG0380015742.01.T01:CDS
GCAAGTGCAATATATGGCCA+AGG 0.628312 3:-74512933 None:intergenic
AAACCTTGTTGTGTTTCGAG+GGG 0.632580 3:-74512880 None:intergenic
GATAAATTAAGGTATTGATG+TGG 0.646726 3:+74515777 MsG0380015742.01.T01:three_prime_UTR
AAAATAGAGACAACTAGCTG+AGG 0.648475 3:+74515443 MsG0380015742.01.T01:three_prime_UTR
AGGGGCCGAACATCAAGAAG+GGG 0.656652 3:-74512862 None:intergenic
TGCATATCCAGCTTCCCTTG+GGG 0.664362 3:-74512822 None:intergenic
TGGGCAATAAGCCTCTGACA+AGG 0.671637 3:-74515486 None:intergenic
GGTGTAGACAATGTTCCTTG+TGG 0.677524 3:+74515415 MsG0380015742.01.T01:three_prime_UTR
TAAAACAGCCTAATTTCACA+AGG 0.690270 3:-74515840 None:intergenic
TACTTGTCAAAAGACAGTGT+AGG 0.751162 3:-74513461 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAATCACCA+TGG - Chr3:74514488-74514507 None:intergenic 15.0%
!! AAAAAAAAAAAAATCACCAT+GGG - Chr3:74514487-74514506 None:intergenic 15.0%
!! AAAATAAAAAATAACTTCTC+TGG + Chr3:74514033-74514052 MsG0380015742.01.T01:intron 15.0%
!! ATGTTAATAACTATCAATTT+GGG + Chr3:74514602-74514621 MsG0380015742.01.T01:intron 15.0%
!! TTAATAGAATCAAATGTATA+AGG - Chr3:74513119-74513138 None:intergenic 15.0%
!!! AAAATTACTTTATTGTTGTT+TGG + Chr3:74514412-74514431 MsG0380015742.01.T01:intron 15.0%
!!! AAATTACTTTATTGTTGTTT+GGG + Chr3:74514413-74514432 MsG0380015742.01.T01:intron 15.0%
!!! CATTTCATTTTTTAAATCTT+TGG + Chr3:74513761-74513780 MsG0380015742.01.T01:intron 15.0%
!!! TATCTTTATTTTTTCATATG+TGG + Chr3:74514532-74514551 MsG0380015742.01.T01:intron 15.0%
!!! TCTGAAATTTATGTTATAAT+GGG + Chr3:74515539-74515558 MsG0380015742.01.T01:three_prime_UTR 15.0%
!!! TTCTGAAATTTATGTTATAA+TGG + Chr3:74515538-74515557 MsG0380015742.01.T01:three_prime_UTR 15.0%
!!! TTTTAAACATCTTATTGTTA+TGG + Chr3:74513012-74513031 MsG0380015742.01.T01:intron 15.0%
!! AAACAATTTCAATGACAAAA+GGG + Chr3:74514572-74514591 MsG0380015742.01.T01:intron 20.0%
!! AATTCAATTCAACAAAAACT+AGG - Chr3:74512433-74512452 None:intergenic 20.0%
!! AGACAAATATTAGAAATTAG+TGG + Chr3:74512545-74512564 MsG0380015742.01.T01:intron 20.0%
!! ATATTGTAGCATTAGAAATT+AGG - Chr3:74514190-74514209 None:intergenic 20.0%
!! GATGTTAATAACTATCAATT+TGG + Chr3:74514601-74514620 MsG0380015742.01.T01:intron 20.0%
!! TAAACAATTTCAATGACAAA+AGG + Chr3:74514571-74514590 MsG0380015742.01.T01:intron 20.0%
!! TATAAATGTAATGAAAGAGT+CGG - Chr3:74513383-74513402 None:intergenic 20.0%
!! TATCATGATGAATTCTAATT+TGG + Chr3:74514207-74514226 MsG0380015742.01.T01:intron 20.0%
!!! AAAATCACAAATTTTGCTAT+GGG + Chr3:74513341-74513360 MsG0380015742.01.T01:CDS 20.0%
!!! AATCTAATAGTGTTTGTTAT+TGG + Chr3:74512673-74512692 MsG0380015742.01.T01:intron 20.0%
!!! AATTACTTTATTGTTGTTTG+GGG + Chr3:74514414-74514433 MsG0380015742.01.T01:intron 20.0%
!!! ATAAATTAAGGTATTGATGT+GGG + Chr3:74515778-74515797 MsG0380015742.01.T01:three_prime_UTR 20.0%
!!! ATTTTGACATCAAATTTGAA+TGG + Chr3:74515261-74515280 MsG0380015742.01.T01:intron 20.0%
!!! CAATTACCAAATACATTTTA+AGG - Chr3:74513712-74513731 None:intergenic 20.0%
!!! CTTAAAATGTATTTGGTAAT+TGG + Chr3:74513710-74513729 MsG0380015742.01.T01:intron 20.0%
!!! TCAGAACAATTTTAAAAGTT+TGG + Chr3:74515091-74515110 MsG0380015742.01.T01:intron 20.0%
!!! TCATCTTGATTTTACAATAA+TGG - Chr3:74515997-74516016 None:intergenic 20.0%
!!! TTACTAATCAATTTTGAGAT+CGG + Chr3:74514713-74514732 MsG0380015742.01.T01:intron 20.0%
! AGAAAATGAAATGCTAGTTA+TGG + Chr3:74512303-74512322 MsG0380015742.01.T01:intron 25.0%
! AGAAATTCAGAAAACTGAAA+TGG - Chr3:74513985-74514004 None:intergenic 25.0%
! ATACTTCTCACAAGTTTAAT+TGG + Chr3:74514360-74514379 MsG0380015742.01.T01:intron 25.0%
! ATCATAAATCCAAGTTTAGA+TGG + Chr3:74515562-74515581 MsG0380015742.01.T01:three_prime_UTR 25.0%
! CATACAATAGATTAATTACC+AGG - Chr3:74515215-74515234 None:intergenic 25.0%
! CCATTTCCTTAAAATGTATT+TGG + Chr3:74513703-74513722 MsG0380015742.01.T01:intron 25.0%
! GAAAAAATTCTCAACAGATA+CGG - Chr3:74515819-74515838 None:intergenic 25.0%
! GAAATTCAGAAAACTGAAAT+GGG - Chr3:74513984-74514003 None:intergenic 25.0%
! GATAAATCTAACTAAACCAT+GGG - Chr3:74515508-74515527 None:intergenic 25.0%
! GCTGTACTCTAATTAAATTT+AGG + Chr3:74514010-74514029 MsG0380015742.01.T01:intron 25.0%
! TAAGGTTTACATTGTCTATT+TGG - Chr3:74513837-74513856 None:intergenic 25.0%
! TATATCACCAACAAATATCT+AGG - Chr3:74512463-74512482 None:intergenic 25.0%
! TATTATCACATACAAGAGTT+TGG - Chr3:74515644-74515663 None:intergenic 25.0%
! TCAAGATGAAGAAAACAAAA+TGG + Chr3:74516008-74516027 MsG0380015742.01.T01:three_prime_UTR 25.0%
! TCATAAATCCAAGTTTAGAT+GGG + Chr3:74515563-74515582 MsG0380015742.01.T01:three_prime_UTR 25.0%
! TGATAAATCTAACTAAACCA+TGG - Chr3:74515509-74515528 None:intergenic 25.0%
! TTAAGTTTGTGCAATTACAA+TGG - Chr3:74514999-74515018 None:intergenic 25.0%
! TTCTTATCCTAGATATTTGT+TGG + Chr3:74512453-74512472 MsG0380015742.01.T01:intron 25.0%
!! ACTTGTTAAATGATTAGAGA+TGG - Chr3:74513809-74513828 None:intergenic 25.0%
!! CTTCGTGAATGTTAATATTT+TGG + Chr3:74515667-74515686 MsG0380015742.01.T01:three_prime_UTR 25.0%
!! CTTTGGTTCAAAAATTATTG+TGG + Chr3:74513778-74513797 MsG0380015742.01.T01:intron 25.0%
!! GAAAATCACAAATTTTGCTA+TGG + Chr3:74513340-74513359 MsG0380015742.01.T01:CDS 25.0%
!! TTATGTTTTCACAGAGTAAA+TGG + Chr3:74512405-74512424 MsG0380015742.01.T01:intron 25.0%
!!! CCAAATACATTTTAAGGAAA+TGG - Chr3:74513706-74513725 None:intergenic 25.0%
!!! GATAAATTAAGGTATTGATG+TGG + Chr3:74515777-74515796 MsG0380015742.01.T01:three_prime_UTR 25.0%
!!! GTTGGTGATATAGATTATTT+GGG + Chr3:74512471-74512490 MsG0380015742.01.T01:intron 25.0%
!!! TATGCACTAATAGTGTTTTT+TGG + Chr3:74515618-74515637 MsG0380015742.01.T01:three_prime_UTR 25.0%
!!! TGTTGGTGATATAGATTATT+TGG + Chr3:74512470-74512489 MsG0380015742.01.T01:intron 25.0%
!!! TTGGATGACTGTATTTTAAT+GGG + Chr3:74512748-74512767 MsG0380015742.01.T01:intron 25.0%
!!! TTTATTTTTTCCTAGATCGA+CGG + Chr3:74514631-74514650 MsG0380015742.01.T01:intron 25.0%
!!! TTTGAGTTATTGATTTATCC+TGG + Chr3:74515394-74515413 MsG0380015742.01.T01:three_prime_UTR 25.0%
!!! TTTGGATGACTGTATTTTAA+TGG + Chr3:74512747-74512766 MsG0380015742.01.T01:intron 25.0%
!!! TTTTTTCTCCTTGTGAAATT+AGG + Chr3:74515832-74515851 MsG0380015742.01.T01:three_prime_UTR 25.0%
AAATTAGGAAGTAAGGTTAG+AGG - Chr3:74514175-74514194 None:intergenic 30.0%
AACATCTTATTGTTATGGTC+AGG + Chr3:74513017-74513036 MsG0380015742.01.T01:intron 30.0%
AACTGCAATTCTTATGTCAT+TGG + Chr3:74514771-74514790 MsG0380015742.01.T01:intron 30.0%
AAGAAACGAAAATCTTCACT+TGG - Chr3:74512213-74512232 None:intergenic 30.0%
AAGATCACAACAATAATGTG+TGG - Chr3:74513219-74513238 None:intergenic 30.0%
ACTGCAATATTATTTCCAGT+TGG + Chr3:74515124-74515143 MsG0380015742.01.T01:intron 30.0%
ACTGCAATTCTTATGTCATT+GGG + Chr3:74514772-74514791 MsG0380015742.01.T01:intron 30.0%
ATATGTGCAAGTGCAATATA+TGG - Chr3:74512942-74512961 None:intergenic 30.0%
ATGTAACCATAGTATCTCAA+TGG - Chr3:74515375-74515394 None:intergenic 30.0%
GATCGTTTATCATGAATTCA+TGG - Chr3:74514836-74514855 None:intergenic 30.0%
GCAACAATATAATCACAGTT+CGG - Chr3:74515733-74515752 None:intergenic 30.0%
GCATTAGAAATTAGGAAGTA+AGG - Chr3:74514182-74514201 None:intergenic 30.0%
GCGAAAATAACAAAACTGAA+AGG - Chr3:74515967-74515986 None:intergenic 30.0%
GTTTAGTTAGATTTATCAGC+AGG + Chr3:74515511-74515530 MsG0380015742.01.T01:three_prime_UTR 30.0%
TAAAACAGCCTAATTTCACA+AGG - Chr3:74515843-74515862 None:intergenic 30.0%
TAATTTATCCACAGCAGTAA+GGG - Chr3:74515766-74515785 None:intergenic 30.0%
TGTAACCATAGTATCTCAAT+GGG - Chr3:74515374-74515393 None:intergenic 30.0%
TGTGAACTACTATATAATGC+CGG + Chr3:74513897-74513916 MsG0380015742.01.T01:intron 30.0%
TTAATTTATCCACAGCAGTA+AGG - Chr3:74515767-74515786 None:intergenic 30.0%
TTACTGCTGTGGATAAATTA+AGG + Chr3:74515766-74515785 MsG0380015742.01.T01:three_prime_UTR 30.0%
TTAGTTTAAGAGTTCTCTGA+TGG + Chr3:74514234-74514253 MsG0380015742.01.T01:intron 30.0%
TTCTCACAAGTTTAATTGGT+TGG + Chr3:74514364-74514383 MsG0380015742.01.T01:intron 30.0%
TTTAGTTAGTTACCTCTAGT+AGG + Chr3:74512964-74512983 MsG0380015742.01.T01:intron 30.0%
! AATCTGGAATACATAACACA+TGG - Chr3:74514812-74514831 None:intergenic 30.0%
! AGAAGTATAATGTTCTAGTG+TGG - Chr3:74514348-74514367 None:intergenic 30.0%
! AGCAAAATTTGTGATTTTCC+TGG - Chr3:74513339-74513358 None:intergenic 30.0%
! GATTATTTGGGATTTCTCAA+AGG + Chr3:74512483-74512502 MsG0380015742.01.T01:intron 30.0%
! GCAAAATTTGTGATTTTCCT+GGG - Chr3:74513338-74513357 None:intergenic 30.0%
! TAGCATGTAGTTTCATCTTT+TGG - Chr3:74514691-74514710 None:intergenic 30.0%
!! AACAATTAGTTCTGCATCTT+TGG - Chr3:74513603-74513622 None:intergenic 30.0%
!! ACAATTAGTTCTGCATCTTT+GGG - Chr3:74513602-74513621 None:intergenic 30.0%
!! ATTGACTTGATGTTATGAAC+AGG + Chr3:74513419-74513438 MsG0380015742.01.T01:intron 30.0%
!! TTGTGAAATTAGGCTGTTTT+AGG + Chr3:74515842-74515861 MsG0380015742.01.T01:three_prime_UTR 30.0%
!!! TGGATGACTGTATTTTAATG+GGG + Chr3:74512749-74512768 MsG0380015742.01.T01:intron 30.0%
!!! TTGAAGGAGTTTTAAGCAAT+AGG - Chr3:74512600-74512619 None:intergenic 30.0%
AAAATAGAGACAACTAGCTG+AGG + Chr3:74515443-74515462 MsG0380015742.01.T01:three_prime_UTR 35.0%
AAATGTGACTCAAACACAAG+GGG - Chr3:74513746-74513765 None:intergenic 35.0%
AAATTAAGGTTCTTACCCCA+AGG + Chr3:74512807-74512826 MsG0380015742.01.T01:CDS 35.0%
AAGCATCAAAGGATGTATGT+TGG + Chr3:74515941-74515960 MsG0380015742.01.T01:three_prime_UTR 35.0%
AATTAAGGTTCTTACCCCAA+GGG + Chr3:74512808-74512827 MsG0380015742.01.T01:CDS 35.0%
ACATGGAAGAAACCTAAACT+AGG - Chr3:74515596-74515615 None:intergenic 35.0%
AGCGCCAATAAATAATGCAT+CGG - Chr3:74515317-74515336 None:intergenic 35.0%
ATACATCCTTTGATGCTTAG+AGG - Chr3:74515939-74515958 None:intergenic 35.0%
ATCAGGTTCAGAACAACATA+AGG - Chr3:74513855-74513874 None:intergenic 35.0%
ATCATGAATTCATGGCAATC+TGG - Chr3:74514828-74514847 None:intergenic 35.0%
ATTCGATCCAGAAACTAACA+TGG - Chr3:74512571-74512590 None:intergenic 35.0%
CAATTTCAATGACAAAAGGG+AGG + Chr3:74514575-74514594 MsG0380015742.01.T01:intron 35.0%
CCAATATTCAATGTCGATGA+TGG + Chr3:74513293-74513312 MsG0380015742.01.T01:CDS 35.0%
CCATCATCGACATTGAATAT+TGG - Chr3:74513296-74513315 None:intergenic 35.0%
GAAATGTGACTCAAACACAA+GGG - Chr3:74513747-74513766 None:intergenic 35.0%
GAAGAATGTTCATAGATCGT+TGG + Chr3:74514973-74514992 MsG0380015742.01.T01:intron 35.0%
GACATTGAATATTGGAATCC+AGG - Chr3:74513288-74513307 None:intergenic 35.0%
GCTCAGGGATGAAAAAATTA+AGG + Chr3:74512793-74512812 MsG0380015742.01.T01:intron 35.0%
GTGAGCTCTATACATTCAAT+AGG + Chr3:74513643-74513662 MsG0380015742.01.T01:intron 35.0%
GTTGCCGATGCATTATTTAT+TGG + Chr3:74515310-74515329 MsG0380015742.01.T01:CDS 35.0%
TACTTGTCAAAAGACAGTGT+AGG - Chr3:74513464-74513483 None:intergenic 35.0%
TGAAATGTGACTCAAACACA+AGG - Chr3:74513748-74513767 None:intergenic 35.0%
TGAATGGTTATTGCGTAGAT+TGG + Chr3:74515277-74515296 MsG0380015742.01.T01:intron 35.0%
! AGGAACTCAATTTTGAATGC+CGG + Chr3:74515463-74515482 MsG0380015742.01.T01:three_prime_UTR 35.0%
! ATAAACCTTGTTGTGTTTCG+AGG - Chr3:74512885-74512904 None:intergenic 35.0%
! ATGTAGTTTCATCTTTTGGC+AGG - Chr3:74514687-74514706 None:intergenic 35.0%
! ATTTGTGATTTTCCTGGGAA+TGG - Chr3:74513333-74513352 None:intergenic 35.0%
! GGGATACAGATTAGTGTTTT+CGG + Chr3:74515185-74515204 MsG0380015742.01.T01:CDS 35.0%
! TAAACCTTGTTGTGTTTCGA+GGG - Chr3:74512884-74512903 None:intergenic 35.0%
! TCATTTTCTCTCGACCATAA+TGG - Chr3:74512292-74512311 None:intergenic 35.0%
! TCTCTATTTTCTCATCCACA+AGG - Chr3:74515433-74515452 None:intergenic 35.0%
! TCTTTTTGCTTACGATATGC+AGG + Chr3:74515037-74515056 MsG0380015742.01.T01:intron 35.0%
! TTAGTTTCTGGATCGAATCT+GGG + Chr3:74512573-74512592 MsG0380015742.01.T01:intron 35.0%
!! GCTCTTTTTGCATGTTTTGA+AGG + Chr3:74513244-74513263 MsG0380015742.01.T01:intron 35.0%
!!! GGATGACTGTATTTTAATGG+GGG + Chr3:74512750-74512769 MsG0380015742.01.T01:intron 35.0%
!!! TTTGCATGTTTTGAAGGCAT+GGG + Chr3:74513250-74513269 MsG0380015742.01.T01:intron 35.0%
!!! TTTTGCATGTTTTGAAGGCA+TGG + Chr3:74513249-74513268 MsG0380015742.01.T01:intron 35.0%
ACGAAAATCTTCACTTGGCA+TGG - Chr3:74512208-74512227 None:intergenic 40.0%
ACTAATTGTTGCATGCCAGA+AGG + Chr3:74513613-74513632 MsG0380015742.01.T01:intron 40.0%
ACTCTTGAAGCGAACCATTA+TGG + Chr3:74512275-74512294 MsG0380015742.01.T01:intron 40.0%
AGTTAGTTACCTCTAGTAGG+AGG + Chr3:74512967-74512986 MsG0380015742.01.T01:intron 40.0%
CACTATTAGTGCATAGCACA+TGG - Chr3:74515613-74515632 None:intergenic 40.0%
CCAAAACAGGTTTGTGTAAC+CGG - Chr3:74513919-74513938 None:intergenic 40.0%
CCAATTCCAGCAAACTTAAG+AGG - Chr3:74514115-74514134 None:intergenic 40.0%
CTAATTGTTGCATGCCAGAA+GGG + Chr3:74513614-74513633 MsG0380015742.01.T01:intron 40.0%
CTGTCATGAGTGATTGATCT+TGG + Chr3:74513054-74513073 MsG0380015742.01.T01:intron 40.0%
CTTAATCCTTTGGTCTGTTG+TGG + Chr3:74514060-74514079 MsG0380015742.01.T01:intron 40.0%
GACTTGATGTTATGAACAGG+AGG + Chr3:74513422-74513441 MsG0380015742.01.T01:intron 40.0%
GCTTTCAACAGTTACTACCA+AGG - Chr3:74513081-74513100 None:intergenic 40.0%
GGTAAGGTAAGAGACATTGA+AGG - Chr3:74512616-74512635 None:intergenic 40.0%
GTTCACAAGCACTAATGATC+TGG - Chr3:74513884-74513903 None:intergenic 40.0%
TAATGATCTGGCCAACAATC+AGG - Chr3:74513872-74513891 None:intergenic 40.0%
TAATGTTCTAGTGTGGCAAC+TGG - Chr3:74514341-74514360 None:intergenic 40.0%
TAGGACCCATTGAGATACTA+TGG + Chr3:74515366-74515385 MsG0380015742.01.T01:exon 40.0%
TCTTTGTTGATCAGTCCAAC+TGG - Chr3:74515142-74515161 None:intergenic 40.0%
TGATGTTATGAACAGGAGGT+TGG + Chr3:74513426-74513445 MsG0380015742.01.T01:intron 40.0%
TGGGATTTCTCAAAGGCTTT+GGG + Chr3:74512490-74512509 MsG0380015742.01.T01:intron 40.0%
TTATTGGCGCTCAGCAAATT+GGG + Chr3:74515326-74515345 MsG0380015742.01.T01:CDS 40.0%
TTGGGATTTCTCAAAGGCTT+TGG + Chr3:74512489-74512508 MsG0380015742.01.T01:intron 40.0%
TTTATTGGCGCTCAGCAAAT+TGG + Chr3:74515325-74515344 MsG0380015742.01.T01:CDS 40.0%
! AAACCTTGTTGTGTTTCGAG+GGG - Chr3:74512883-74512902 None:intergenic 40.0%
! CGGTTACACAAACCTGTTTT+GGG + Chr3:74513917-74513936 MsG0380015742.01.T01:intron 40.0%
! GTTAGTTTCTGGATCGAATC+TGG + Chr3:74512572-74512591 MsG0380015742.01.T01:intron 40.0%
! GTTGTTCTGAACCTGATTGT+TGG + Chr3:74513858-74513877 MsG0380015742.01.T01:intron 40.0%
! TTAGTGGCCATGTTAGTTTC+TGG + Chr3:74512561-74512580 MsG0380015742.01.T01:intron 40.0%
!! CCTCTTAAGTTTGCTGGAAT+TGG + Chr3:74514112-74514131 MsG0380015742.01.T01:intron 40.0%
!! CTTAAGTTTGCTGGAATTGG+TGG + Chr3:74514115-74514134 MsG0380015742.01.T01:intron 40.0%
!! CTTTATTGTTGTTTGGGGCA+TGG + Chr3:74514419-74514438 MsG0380015742.01.T01:intron 40.0%
!! GCTCTTGCTTTTGTTTACCT+TGG + Chr3:74512916-74512935 MsG0380015742.01.T01:CDS 40.0%
!!! ACAAACCTGTTTTGGGTTCA+AGG + Chr3:74513924-74513943 MsG0380015742.01.T01:intron 40.0%
AAAAGCAAGAGCTGCGTCAT+AGG - Chr3:74512908-74512927 None:intergenic 45.0%
AACAGAAACCCTTACTGCTG+TGG + Chr3:74515755-74515774 MsG0380015742.01.T01:three_prime_UTR 45.0%
AATAGACTGTCCGTCGATCT+AGG - Chr3:74514644-74514663 None:intergenic 45.0%
ACAAGCCCCTTCTTGATGTT+CGG + Chr3:74512857-74512876 MsG0380015742.01.T01:CDS 45.0%
AGTTTACTAAAGAGCCGCGT+AGG - Chr3:74512649-74512668 None:intergenic 45.0%
CAAGAGCCTCTAAGCATCAA+AGG + Chr3:74515930-74515949 MsG0380015742.01.T01:three_prime_UTR 45.0%
CAAGGAACATTGTCTACACC+AGG - Chr3:74515415-74515434 None:intergenic 45.0%
CGTGTTTGCTTTGTAGCTCA+GGG + Chr3:74512778-74512797 MsG0380015742.01.T01:intron 45.0%
CTCGTTCTTACCCAAAGTTG+CGG + Chr3:74513569-74513588 MsG0380015742.01.T01:intron 45.0%
CTCTGGTGAGCTTAATCCTT+TGG + Chr3:74514050-74514069 MsG0380015742.01.T01:intron 45.0%
CTTTGATGCTGCTGAAGAAG+AGG + Chr3:74513950-74513969 MsG0380015742.01.T01:intron 45.0%
GAGTGATTGATCTTGGACCT+TGG + Chr3:74513061-74513080 MsG0380015742.01.T01:intron 45.0%
GCAAGTGCAATATATGGCCA+AGG - Chr3:74512936-74512955 None:intergenic 45.0%
GGTGGTGTTTCGGAATTCTT+GGG + Chr3:74514133-74514152 MsG0380015742.01.T01:intron 45.0%
GGTGTAGACAATGTTCCTTG+TGG + Chr3:74515415-74515434 MsG0380015742.01.T01:three_prime_UTR 45.0%
TAGATCGACGGACAGTCTAT+TGG + Chr3:74514643-74514662 MsG0380015742.01.T01:intron 45.0%
TAGATGTTGGAACCATTCCC+AGG + Chr3:74513318-74513337 MsG0380015742.01.T01:CDS 45.0%
TAGTAGGAGGTGACAAGGAA+AGG + Chr3:74512980-74512999 MsG0380015742.01.T01:intron 45.0%
TGATGCATGTTGAAGACCCA+TGG + Chr3:74514468-74514487 MsG0380015742.01.T01:intron 45.0%
TGTTATGAACAGGAGGTTGG+TGG + Chr3:74513429-74513448 MsG0380015742.01.T01:intron 45.0%
! CCGGTTACACAAACCTGTTT+TGG + Chr3:74513916-74513935 MsG0380015742.01.T01:intron 45.0%
! CTGCGATCTTCTTTTGCGTT+TGG + Chr3:74512729-74512748 MsG0380015742.01.T01:intron 45.0%
! GTCGATGATGGTCTAGATGT+TGG + Chr3:74513305-74513324 MsG0380015742.01.T01:CDS 45.0%
! TGGTGGTGTTTCGGAATTCT+TGG + Chr3:74514132-74514151 MsG0380015742.01.T01:intron 45.0%
!! ATCCAAGTTTAGATGGGCTG+TGG + Chr3:74515569-74515588 MsG0380015742.01.T01:three_prime_UTR 45.0%
!! TGCTGGAATTGGTGGTGTTT+CGG + Chr3:74514123-74514142 MsG0380015742.01.T01:intron 45.0%
!!! AACCTGTTTTGGGTTCAAGG+AGG + Chr3:74513927-74513946 MsG0380015742.01.T01:intron 45.0%
!!! GTTTTGAAGGCATGGGTGAA+AGG + Chr3:74513257-74513276 MsG0380015742.01.T01:intron 45.0%
ACCTCTAGTAGGAGGTGACA+AGG + Chr3:74512975-74512994 MsG0380015742.01.T01:intron 50.0%
ACTGCATATCCAGCTTCCCT+TGG - Chr3:74512827-74512846 None:intergenic 50.0%
AGCCTCCTTGAACCCAAAAC+AGG - Chr3:74513932-74513951 None:intergenic 50.0%
CAATAAGCCTCTGACAAGGC+CGG - Chr3:74515485-74515504 None:intergenic 50.0%
CATGGGTGAAAGGTTCAACC+TGG + Chr3:74513267-74513286 MsG0380015742.01.T01:CDS 50.0%
CTGCATATCCAGCTTCCCTT+GGG - Chr3:74512826-74512845 None:intergenic 50.0%
GACCACAGCCCATCTAAACT+TGG - Chr3:74515574-74515593 None:intergenic 50.0%
GCAAATTGGGCGCTATCTTC+AGG + Chr3:74515339-74515358 MsG0380015742.01.T01:CDS 50.0%
GCGTGTTTGCTTTGTAGCTC+AGG + Chr3:74512777-74512796 MsG0380015742.01.T01:intron 50.0%
GGCGCTATCTTCAGGAGATT+AGG + Chr3:74515347-74515366 MsG0380015742.01.T01:CDS 50.0%
GGGAACTTCTCCGCAACTTT+GGG - Chr3:74513582-74513601 None:intergenic 50.0%
TCAGCGCCTCTTAAGTTTGC+TGG + Chr3:74514106-74514125 MsG0380015742.01.T01:intron 50.0%
TCCTTGTCACCTCCTACTAG+AGG - Chr3:74512979-74512998 None:intergenic 50.0%
TCTGTATCCCCAACCTTCCT+TGG - Chr3:74515175-74515194 None:intergenic 50.0%
TGCATATCCAGCTTCCCTTG+GGG - Chr3:74512825-74512844 None:intergenic 50.0%
TGGGAACTTCTCCGCAACTT+TGG - Chr3:74513583-74513602 None:intergenic 50.0%
TGGGCAATAAGCCTCTGACA+AGG - Chr3:74515489-74515508 None:intergenic 50.0%
TGGGGCATGGTATAGTGCAT+GGG + Chr3:74514432-74514451 MsG0380015742.01.T01:intron 50.0%
TGTCAGAGGCTTATTGCCCA+TGG + Chr3:74515489-74515508 MsG0380015742.01.T01:three_prime_UTR 50.0%
TTGGGGCATGGTATAGTGCA+TGG + Chr3:74514431-74514450 MsG0380015742.01.T01:intron 50.0%
! ATGGGCTGTGGTCCTAGTTT+AGG + Chr3:74515581-74515600 MsG0380015742.01.T01:three_prime_UTR 50.0%
! ATTAGTGTTTTCGGCACGCC+TGG + Chr3:74515194-74515213 MsG0380015742.01.T01:CDS 50.0%
AAAGAGCCGCGTAGGTAGCT+CGG - Chr3:74512641-74512660 None:intergenic 55.0%
ACAAAGAGCTGCTGCAGCCA+AGG + Chr3:74515155-74515174 MsG0380015742.01.T01:CDS 55.0%
AGGGGCCGAACATCAAGAAG+GGG - Chr3:74512865-74512884 None:intergenic 55.0%
CCTGCTCCACAACAGACCAA+AGG - Chr3:74514069-74514088 None:intergenic 55.0%
CCTTTGGTCTGTTGTGGAGC+AGG + Chr3:74514066-74514085 MsG0380015742.01.T01:intron 55.0%
GAGCAGGATCTTGTCGTGGA+GGG + Chr3:74514082-74514101 MsG0380015742.01.T01:intron 55.0%
GAGGGGCCGAACATCAAGAA+GGG - Chr3:74512866-74512885 None:intergenic 55.0%
GTTCTTACCCCAAGGGAAGC+TGG + Chr3:74512815-74512834 MsG0380015742.01.T01:CDS 55.0%
TACCAACCGAGCTACCTACG+CGG + Chr3:74512632-74512651 MsG0380015742.01.T01:intron 55.0%
TGCTGCAGCCAAGGAAGGTT+GGG + Chr3:74515164-74515183 MsG0380015742.01.T01:CDS 55.0%
TGTGGAGCAGGATCTTGTCG+TGG + Chr3:74514078-74514097 MsG0380015742.01.T01:intron 55.0%
TTGCATGCCAGAAGGGACTG+AGG + Chr3:74513621-74513640 MsG0380015742.01.T01:intron 55.0%
! CGTAGGTAGCTCGGTTGGTA+AGG - Chr3:74512632-74512651 None:intergenic 55.0%
! TTGAATGCCGGCCTTGTCAG+AGG + Chr3:74515475-74515494 MsG0380015742.01.T01:three_prime_UTR 55.0%
!! TGAACAGGAGGTTGGTGGAG+TGG + Chr3:74513434-74513453 MsG0380015742.01.T01:intron 55.0%
AGAGCTGCTGCAGCCAAGGA+AGG + Chr3:74515159-74515178 MsG0380015742.01.T01:CDS 60.0%
CGAGGGGCCGAACATCAAGA+AGG - Chr3:74512867-74512886 None:intergenic 60.0%
CGGCCCCTCGAAACACAACA+AGG + Chr3:74512877-74512896 MsG0380015742.01.T01:CDS 60.0%
CTGCTGCAGCCAAGGAAGGT+TGG + Chr3:74515163-74515182 MsG0380015742.01.T01:CDS 60.0%
GAGCTCACCTCAGTCCCTTC+TGG - Chr3:74513631-74513650 None:intergenic 60.0%
GCTGCAGCCAAGGAAGGTTG+GGG + Chr3:74515165-74515184 MsG0380015742.01.T01:CDS 60.0%
GGAGCAGGATCTTGTCGTGG+AGG + Chr3:74514081-74514100 MsG0380015742.01.T01:intron 60.0%
AGCCGCGTAGGTAGCTCGGT+TGG - Chr3:74512637-74512656 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 74512207 74516051 74512207 ID=MsG0380015742.01;Name=MsG0380015742.01
Chr3 mRNA 74512207 74516051 74512207 ID=MsG0380015742.01.T01;Parent=MsG0380015742.01;Name=MsG0380015742.01.T01;_AED=0.35;_eAED=0.37;_QI=0|0.4|0.66|1|0|0.16|6|673|166
Chr3 exon 74512207 74512239 74512207 ID=MsG0380015742.01.T01:exon:14302;Parent=MsG0380015742.01.T01
Chr3 exon 74512794 74512967 74512794 ID=MsG0380015742.01.T01:exon:14303;Parent=MsG0380015742.01.T01
Chr3 exon 74513266 74513362 74513266 ID=MsG0380015742.01.T01:exon:14304;Parent=MsG0380015742.01.T01
Chr3 exon 74513441 74513480 74513441 ID=MsG0380015742.01.T01:exon:14305;Parent=MsG0380015742.01.T01
Chr3 exon 74515143 74515215 74515143 ID=MsG0380015742.01.T01:exon:14306;Parent=MsG0380015742.01.T01
Chr3 exon 74515295 74516051 74515295 ID=MsG0380015742.01.T01:exon:14307;Parent=MsG0380015742.01.T01
Chr3 CDS 74512207 74512239 74512207 ID=MsG0380015742.01.T01:cds;Parent=MsG0380015742.01.T01
Chr3 CDS 74512794 74512967 74512794 ID=MsG0380015742.01.T01:cds;Parent=MsG0380015742.01.T01
Chr3 CDS 74513266 74513362 74513266 ID=MsG0380015742.01.T01:cds;Parent=MsG0380015742.01.T01
Chr3 CDS 74513441 74513480 74513441 ID=MsG0380015742.01.T01:cds;Parent=MsG0380015742.01.T01
Chr3 CDS 74515143 74515215 74515143 ID=MsG0380015742.01.T01:cds;Parent=MsG0380015742.01.T01
Chr3 CDS 74515295 74515378 74515295 ID=MsG0380015742.01.T01:cds;Parent=MsG0380015742.01.T01
Chr3 three_prime_UTR 74515379 74516051 74515379 ID=MsG0380015742.01.T01:three_prime_utr;Parent=MsG0380015742.01.T01
Gene Sequence

>MsG0380015742.01.T01

ATGCCAAGTGAAGATTTTCGTTTCTTTGAAAATCTCAGGGATGAAAAAATTAAGGTTCTTACCCCAAGGGAAGCTGGATATGCAGTTCAGCTTTCAACAAGCCCCTTCTTGATGTTCGGCCCCTCGAAACACAACAAGGTTTATCCTATGACGCAGCTCTTGCTTTTGTTTACCTTGGCCATATATTGCACTTGCACATATAATTTAGCATGGGTGAAAGGTTCAACCTGGATTCCAATATTCAATGTCGATGATGGTCTAGATGTTGGAACCATTCCCAGGAAAATCACAAATTTTGCTATGGGAGGTTGGTGGAGTGGCATGCCTACACTGTCTTTTGACAATTGGACTGATCAACAAAGAGCTGCTGCAGCCAAGGAAGGTTGGGGATACAGATTAGTGTTTTCGGCACGCCTGATTGGAGTATTTCTTGTTGCCGATGCATTATTTATTGGCGCTCAGCAAATTGGGCGCTATCTTCAGGAGATTAGGACCCATTGA

Protein sequence

>MsG0380015742.01.T01

MPSEDFRFFENLRDEKIKVLTPREAGYAVQLSTSPFLMFGPSKHNKVYPMTQLLLLFTLAIYCTCTYNLAWVKGSTWIPIFNVDDGLDVGTIPRKITNFAMGGWWSGMPTLSFDNWTDQQRAAAAKEGWGYRLVFSARLIGVFLVADALFIGAQQIGRYLQEIRTH*