AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046104.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046104.01.T01 MTR_4g099340 82.253 293 13 2 1 289 1 258 2.12e-157 439
MsG0880046104.01.T01 MTR_4g099340 93.798 129 4 1 1 125 1 129 1.67e-79 239
MsG0880046104.01.T01 MTR_4g099330 77.778 81 7 3 208 288 38 107 4.76e-32 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046104.01.T01 AT4G17600 49.000 300 94 8 9 288 1 261 2.47e-81 246
MsG0880046104.01.T01 AT5G47110 45.763 295 104 4 5 285 1 253 2.84e-79 241

Find 78 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTCATTGCTGGATGATTC+TGG 0.199235 8:+69078041 None:intergenic
CCTGAAGCTGAACTACTTAA+TGG 0.265081 8:-69077958 MsG0880046104.01.T01:CDS
CTTGGGATTTGATGCAGTTT+AGG 0.275261 8:-69079686 MsG0880046104.01.T01:CDS
ACTTTGTTAACCTTTCTTCT+TGG 0.303798 8:-69077864 MsG0880046104.01.T01:CDS
AGGATTCTTTATGACATATC+TGG 0.306621 8:-69077814 MsG0880046104.01.T01:CDS
CTAGATGGGTTGCTGGGACT+TGG 0.308595 8:-69079704 MsG0880046104.01.T01:CDS
CAGAGGCAAGAAGAAGAAAA+TGG 0.311661 8:-69078076 MsG0880046104.01.T01:CDS
GTTGTTGCTGTGATGGGGTT+TGG 0.321435 8:+69079923 None:intergenic
TCCTGTTGCTGAGGAGGTTA+AGG 0.324053 8:-69079748 MsG0880046104.01.T01:CDS
CTTTGTTAACCTTTCTTCTT+GGG 0.325127 8:-69077863 MsG0880046104.01.T01:CDS
AATATCTCTGTTGGGACAAA+TGG 0.327366 8:-69079786 MsG0880046104.01.T01:CDS
AACAACTATGTCTATGTCTA+TGG 0.327759 8:-69079994 MsG0880046104.01.T01:CDS
TGCAAAAGAAGTTGTTCATT+TGG 0.330402 8:+69077760 None:intergenic
GTGGATCCTAGATGGGTTGC+TGG 0.337107 8:-69079711 MsG0880046104.01.T01:CDS
CCATTAAGTAGTTCAGCTTC+AGG 0.354800 8:+69077958 None:intergenic
TAGATGGGTTGCTGGGACTT+GGG 0.360135 8:-69079703 MsG0880046104.01.T01:CDS
GCAGGTCGTGCCGCAATGAT+AGG 0.391276 8:-69077834 MsG0880046104.01.T01:CDS
CACTACAGGATTGTCATTGC+TGG 0.391810 8:+69078031 None:intergenic
TCTATCTCATCCTTTGAGAA+TGG 0.407619 8:+69080144 None:intergenic
ACCTTAACCTCCTCAGCAAC+AGG 0.409183 8:+69079747 None:intergenic
AAAGGAGAGAGGGAGAATAA+AGG 0.426062 8:+69079867 None:intergenic
TGTCATTGCTGGATGATTCT+GGG 0.426373 8:+69078042 None:intergenic
CACCTCCATTGTACCTTGGT+GGG 0.440364 8:-69078003 MsG0880046104.01.T01:CDS
CCATTGTACCTTGGTGGGCA+TGG 0.442929 8:-69077998 MsG0880046104.01.T01:CDS
ACACCTCCATTGTACCTTGG+TGG 0.444291 8:-69078004 MsG0880046104.01.T01:CDS
GAGATAGAAGTGAGAGAGAG+AGG 0.445148 8:-69080129 MsG0880046104.01.T01:five_prime_UTR
AAAGAGGTTGTTGCTGTGAT+GGG 0.448159 8:+69079917 None:intergenic
CTTGGTGGGCATGGATCAAA+AGG 0.454670 8:-69077989 MsG0880046104.01.T01:CDS
CTATCTCATCCTTTGAGAAT+GGG 0.455940 8:+69080145 None:intergenic
TCTCCTTTGAGAGCTTCAGC+TGG 0.464697 8:-69079852 MsG0880046104.01.T01:CDS
CAAGTCCCAGCAACCCATCT+AGG 0.465863 8:+69079705 None:intergenic
GTCTGAGAGTGAGAGTAAAG+AGG 0.470984 8:+69079901 None:intergenic
TGCTGTTCCTGTTGCTGAGG+AGG 0.473204 8:-69079754 MsG0880046104.01.T01:CDS
AGTAGTTCAGCTTCAGGAGA+TGG 0.478352 8:+69077964 None:intergenic
TGGGATGCTGTTATTGATGC+TGG 0.487504 8:-69079645 MsG0880046104.01.T01:intron
TTTCTTCTTGGGTATCATGC+AGG 0.492078 8:-69077852 MsG0880046104.01.T01:CDS
TATCTGGTCGATAGCTTGAC+AGG 0.493166 8:-69077798 MsG0880046104.01.T01:CDS
ACAAGCAATGGCAAGCAACT+TGG 0.494549 8:-69077638 MsG0880046104.01.T01:CDS
GTCCCAACAGAGATATTCTC+AGG 0.497364 8:+69079792 None:intergenic
CTGAAGCTCTCAAAGGAGAG+AGG 0.497577 8:+69079856 None:intergenic
ATATCTCTGTTGGGACAAAT+GGG 0.501225 8:-69079785 MsG0880046104.01.T01:CDS
CACCTGAGAATATCTCTGTT+GGG 0.512810 8:-69079794 MsG0880046104.01.T01:CDS
AACTCTTCTCTTCGTAGCAG+TGG 0.516899 8:-69077736 MsG0880046104.01.T01:CDS
GTGGTTGAGATTCTAGTAAG+AGG 0.522550 8:+69079960 None:intergenic
TGGATCCTAGATGGGTTGCT+GGG 0.524372 8:-69079710 MsG0880046104.01.T01:CDS
CCACCTGAGAATATCTCTGT+TGG 0.527412 8:-69079795 MsG0880046104.01.T01:CDS
TAAAGAGGTTGTTGCTGTGA+TGG 0.527773 8:+69079916 None:intergenic
TGAAGCTCTCAAAGGAGAGA+GGG 0.529054 8:+69079857 None:intergenic
ACTCTTCTCTTCGTAGCAGT+GGG 0.529406 8:-69077735 MsG0880046104.01.T01:CDS
GAGGAGGTTAAGGTTTCTAG+TGG 0.532829 8:-69079738 MsG0880046104.01.T01:CDS
TGCATGATACCCAAGAAGAA+AGG 0.535387 8:+69077854 None:intergenic
CATAGACATAGTTGTTGACA+TGG 0.536011 8:+69080001 None:intergenic
TTGACACCTCCATTGTACCT+TGG 0.538618 8:-69078007 MsG0880046104.01.T01:CDS
TTCTGCTGTTCCTGTTGCTG+AGG 0.541706 8:-69079757 MsG0880046104.01.T01:CDS
GAGAGAGGGAGAATAAAGGA+AGG 0.556971 8:+69079871 None:intergenic
GCAATGGCAAGCAACTTGGC+AGG 0.558161 8:-69077634 MsG0880046104.01.T01:CDS
GTTCCAGCTGAAGCTCTCAA+AGG 0.564912 8:+69079849 None:intergenic
ATGGAGGTGTCAAACACTAC+AGG 0.565063 8:+69078017 None:intergenic
ACAGAGATATTCTCAGGTGG+TGG 0.567214 8:+69079798 None:intergenic
CCATGCCCACCAAGGTACAA+TGG 0.590303 8:+69077998 None:intergenic
AAGAGGTTGTTGCTGTGATG+GGG 0.604087 8:+69079918 None:intergenic
ACTTCTCATCAGGAAGAATG+AGG 0.608234 8:-69077706 MsG0880046104.01.T01:CDS
TCTTCTCTTCGTAGCAGTGG+GGG 0.615034 8:-69077733 MsG0880046104.01.T01:CDS
GTACTTGTGCCCATTCTCAA+AGG 0.615059 8:-69080154 MsG0880046104.01.T01:five_prime_UTR
CTTCTCTTCGTAGCAGTGGG+GGG 0.622227 8:-69077732 MsG0880046104.01.T01:CDS
AAAATGAAACGAGAAAGTAA+AGG 0.623620 8:-69077915 MsG0880046104.01.T01:CDS
CTCTTCTCTTCGTAGCAGTG+GGG 0.624987 8:-69077734 MsG0880046104.01.T01:CDS
CATAAAGAATCCTATCATTG+CGG 0.653449 8:+69077824 None:intergenic
GTGAAGTGAACTAGTGAGGT+GGG 0.653474 8:+69080191 None:intergenic
GTCGATAGCTTGACAGGAGT+AGG 0.654568 8:-69077792 MsG0880046104.01.T01:CDS
TTTGGAGAGTGAAGAATGAG+TGG 0.655905 8:+69079941 None:intergenic
AATAACAGCATCCCAATCAG+TGG 0.659865 8:+69079653 None:intergenic
ATGATGTTAGTATAAGTGTG+TGG 0.677703 8:+69080040 None:intergenic
ACAAGTACAACAACACAATG+AGG 0.689410 8:+69080169 None:intergenic
CCAACAGAGATATTCTCAGG+TGG 0.707278 8:+69079795 None:intergenic
TGCCCACCAAGGTACAATGG+AGG 0.708718 8:+69078001 None:intergenic
GGTGAAGTGAACTAGTGAGG+TGG 0.717626 8:+69080190 None:intergenic
TGAGGTGAAGTGAACTAGTG+AGG 0.734267 8:+69080187 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACAATTATTTAATTAGAA+GGG + Chr8:69079501-69079520 None:intergenic 10.0%
!! CTTACAATTATTTAATTAGA+AGG + Chr8:69079502-69079521 None:intergenic 15.0%
!! TAGAAATAGAAATAAAATTG+AGG + Chr8:69079631-69079650 None:intergenic 15.0%
!!! AAATTTAGAATAACTAAATC+AGG + Chr8:69078442-69078461 None:intergenic 15.0%
!!! ATTTAGTGATTAATTTGTTA+AGG + Chr8:69078566-69078585 None:intergenic 15.0%
!!! TATTTCTATTTCTATATACT+AGG - Chr8:69079637-69079656 MsG0880046104.01.T01:intron 15.0%
!!! TGATACTTTTAAGAAATTAT+TGG - Chr8:69080111-69080130 MsG0880046104.01.T01:five_prime_UTR 15.0%
!! AGAAAATTAAACTCTATAGT+AGG + Chr8:69078289-69078308 None:intergenic 20.0%
!! CTACTAATCATATTGATATA+GGG - Chr8:69079555-69079574 MsG0880046104.01.T01:intron 20.0%
!! TATGTTAACTGAATAATAAG+TGG - Chr8:69078329-69078348 MsG0880046104.01.T01:intron 20.0%
!!! TACTTTTAAGAAATTATTGG+AGG - Chr8:69080114-69080133 MsG0880046104.01.T01:five_prime_UTR 20.0%
! AAAACAATACAAGGTAGAAA+AGG + Chr8:69078173-69078192 None:intergenic 25.0%
! AAAATGAAACGAGAAAGTAA+AGG - Chr8:69079875-69079894 MsG0880046104.01.T01:CDS 25.0%
! ATCAATATGATTAGTAGCAA+TGG + Chr8:69079552-69079571 None:intergenic 25.0%
! GCTACTAATCATATTGATAT+AGG - Chr8:69079554-69079573 MsG0880046104.01.T01:intron 25.0%
! TAAACTCTATAGTAGGAAAT+GGG + Chr8:69078282-69078301 None:intergenic 25.0%
! TAGACGGTAATTGTATAATA+GGG - Chr8:69079439-69079458 MsG0880046104.01.T01:intron 25.0%
! TTAAACTCTATAGTAGGAAA+TGG + Chr8:69078283-69078302 None:intergenic 25.0%
!! AATGTACTCATTTTCTGATT+TGG - Chr8:69079678-69079697 MsG0880046104.01.T01:CDS 25.0%
!! AGTAGAAAGTTAAAGAGTAT+AGG + Chr8:69079248-69079267 None:intergenic 25.0%
!! ATCCTCTTTTTATGATCAAA+AGG - Chr8:69079523-69079542 MsG0880046104.01.T01:intron 25.0%
!! CTGTTAATAAAAAAAGCACA+GGG - Chr8:69079130-69079149 MsG0880046104.01.T01:intron 25.0%
!! TCCTCTTTTTATGATCAAAA+GGG - Chr8:69079524-69079543 MsG0880046104.01.T01:intron 25.0%
!! TCTGTTAATAAAAAAAGCAC+AGG - Chr8:69079129-69079148 MsG0880046104.01.T01:intron 25.0%
!! TGTTAATAAAAAAAGCACAG+GGG - Chr8:69079131-69079150 MsG0880046104.01.T01:intron 25.0%
!!! ATAGAGTTTAATTTTCTCTG+TGG - Chr8:69078292-69078311 MsG0880046104.01.T01:intron 25.0%
!!! GATTAATTTGTTAAGGCAAT+GGG + Chr8:69078559-69078578 None:intergenic 25.0%
!!! TGATTAATTTGTTAAGGCAA+TGG + Chr8:69078560-69078579 None:intergenic 25.0%
AACAACTATGTCTATGTCTA+TGG - Chr8:69077796-69077815 MsG0880046104.01.T01:CDS 30.0%
AAGGATTATGTAGGAGATTT+AGG - Chr8:69078509-69078528 MsG0880046104.01.T01:intron 30.0%
ACTAAATATTACCCACATAG+TGG - Chr8:69078579-69078598 MsG0880046104.01.T01:intron 30.0%
ACTTTGTTAACCTTTCTTCT+TGG - Chr8:69079926-69079945 MsG0880046104.01.T01:CDS 30.0%
AGGATTCTTTATGACATATC+TGG - Chr8:69079976-69079995 MsG0880046104.01.T01:CDS 30.0%
ATGATGTTAGTATAAGTGTG+TGG + Chr8:69077753-69077772 None:intergenic 30.0%
ATTAGAAGGGTAAAGATCAA+AGG + Chr8:69079488-69079507 None:intergenic 30.0%
CAATCCTACAAAACAATACA+AGG + Chr8:69078182-69078201 None:intergenic 30.0%
CATAAAGAATCCTATCATTG+CGG + Chr8:69079969-69079988 None:intergenic 30.0%
CTTTGTTAACCTTTCTTCTT+GGG - Chr8:69079927-69079946 MsG0880046104.01.T01:CDS 30.0%
GTAGACGGTAATTGTATAAT+AGG - Chr8:69079438-69079457 MsG0880046104.01.T01:intron 30.0%
TGAAATTCGTTTACTTCCAT+AGG + Chr8:69078376-69078395 None:intergenic 30.0%
TGCAAAAGAAGTTGTTCATT+TGG + Chr8:69080033-69080052 None:intergenic 30.0%
TTGATGCAGTTTAGGAAAAA+TGG - Chr8:69078112-69078131 MsG0880046104.01.T01:intron 30.0%
TTTATCTTAACAGCTGCTAA+AGG + Chr8:69079094-69079113 None:intergenic 30.0%
! CCTCTTTTTATGATCAAAAG+GGG - Chr8:69079525-69079544 MsG0880046104.01.T01:intron 30.0%
! CTACATTTTATGACAAGCAA+TGG - Chr8:69080140-69080159 MsG0880046104.01.T01:five_prime_UTR 30.0%
! CTCTTTTTATGATCAAAAGG+GGG - Chr8:69079526-69079545 MsG0880046104.01.T01:intron 30.0%
! TAGTGTATTTAGTTTACTGC+TGG - Chr8:69078906-69078925 MsG0880046104.01.T01:intron 30.0%
! TTAAAGAGTATAGGAAGACT+AGG + Chr8:69079239-69079258 None:intergenic 30.0%
!! CATTAGTGTATTTAGTTTGC+TGG - Chr8:69078704-69078723 MsG0880046104.01.T01:intron 30.0%
!! TCTACCTTGTATTGTTTTGT+AGG - Chr8:69078175-69078194 MsG0880046104.01.T01:intron 30.0%
!!! AAAGGTTGTTTTTCGATAAG+AGG - Chr8:69079893-69079912 MsG0880046104.01.T01:CDS 30.0%
!!! AAGGTTGTTTTTCGATAAGA+GGG - Chr8:69079894-69079913 MsG0880046104.01.T01:CDS 30.0%
!!! GAAGAAATCTGTGTTTTTTG+TGG - Chr8:69078414-69078433 MsG0880046104.01.T01:intron 30.0%
!!! GAGAATAAAGGAAGGTTTTT+TGG + Chr8:69077914-69077933 None:intergenic 30.0%
AATAACCATTGATGAGTCCA+AGG + Chr8:69078652-69078671 None:intergenic 35.0%
AATATCTCTGTTGGGACAAA+TGG - Chr8:69078004-69078023 MsG0880046104.01.T01:CDS 35.0%
ACAAGTACAACAACACAATG+AGG + Chr8:69077624-69077643 None:intergenic 35.0%
ACCACTAGACTAATTCTTCA+GGG + Chr8:69078470-69078489 None:intergenic 35.0%
AGTCAGTTTGGGTAAACTTA+TGG - Chr8:69079369-69079388 MsG0880046104.01.T01:intron 35.0%
ATATCTCTGTTGGGACAAAT+GGG - Chr8:69078005-69078024 MsG0880046104.01.T01:CDS 35.0%
ATGTAGACTTAGAGTCAGTT+TGG - Chr8:69079357-69079376 MsG0880046104.01.T01:intron 35.0%
CAATGGTTATTCCTTCTTCT+GGG - Chr8:69078661-69078680 MsG0880046104.01.T01:intron 35.0%
CATAGACATAGTTGTTGACA+TGG + Chr8:69077792-69077811 None:intergenic 35.0%
CCAAAATGCAGAAGACAAAT+TGG + Chr8:69079276-69079295 None:intergenic 35.0%
CTGAATAATAAGTGGTACTG+TGG - Chr8:69078337-69078356 MsG0880046104.01.T01:intron 35.0%
TCAAAAAGCAGTGTGTTTCA+TGG + Chr8:69078813-69078832 None:intergenic 35.0%
TCAATGGTTATTCCTTCTTC+TGG - Chr8:69078660-69078679 MsG0880046104.01.T01:intron 35.0%
TCTACATCAGTTTCATGCTT+TGG + Chr8:69079344-69079363 None:intergenic 35.0%
TGTAGACTTAGAGTCAGTTT+GGG - Chr8:69079358-69079377 MsG0880046104.01.T01:intron 35.0%
! AAGAATTAGTCTAGTGGTCT+GGG - Chr8:69078472-69078491 MsG0880046104.01.T01:intron 35.0%
! ACTCTGAAGAAGGATTATGT+AGG - Chr8:69078500-69078519 MsG0880046104.01.T01:intron 35.0%
! CCAATTTGTCTTCTGCATTT+TGG - Chr8:69079273-69079292 MsG0880046104.01.T01:intron 35.0%
! CCCCTTTTGATCATAAAAAG+AGG + Chr8:69079528-69079547 None:intergenic 35.0%
! CTATCTCATCCTTTGAGAAT+GGG + Chr8:69077648-69077667 None:intergenic 35.0%
! CTCTTGATTTTTGCAAAGCA+GGG + Chr8:69079169-69079188 None:intergenic 35.0%
! GAAAAATGGTACCACTGATT+GGG - Chr8:69078126-69078145 MsG0880046104.01.T01:intron 35.0%
! TATTACCCACATAGTGGAAA+AGG - Chr8:69078585-69078604 MsG0880046104.01.T01:intron 35.0%
! TCTATCTCATCCTTTGAGAA+TGG + Chr8:69077649-69077668 None:intergenic 35.0%
! TCTCTTTTACAGTTGGCATA+AGG - Chr8:69079582-69079601 MsG0880046104.01.T01:intron 35.0%
! TTCTTCTTGCCTCTGAAAAT+GGG + Chr8:69079709-69079728 None:intergenic 35.0%
!! AAAGATCTGGTTTGTTGAGT+GGG - Chr8:69079047-69079066 MsG0880046104.01.T01:intron 35.0%
!!! TAAGGTTTCTAGTGGTTTTG+TGG - Chr8:69078060-69078079 MsG0880046104.01.T01:CDS 35.0%
AAAGAGGTTGTTGCTGTGAT+GGG + Chr8:69077876-69077895 None:intergenic 40.0%
AAAGCAGTGTGTTTCATGGT+CGG + Chr8:69078809-69078828 None:intergenic 40.0%
AAAGGAGAGAGGGAGAATAA+AGG + Chr8:69077926-69077945 None:intergenic 40.0%
AATAACAGCATCCCAATCAG+TGG + Chr8:69078140-69078159 None:intergenic 40.0%
AATAGTTACCGAGGACTCAA+AGG - Chr8:69078764-69078783 MsG0880046104.01.T01:intron 40.0%
ACTTCTCATCAGGAAGAATG+AGG - Chr8:69080084-69080103 MsG0880046104.01.T01:five_prime_UTR 40.0%
ATACAGCCAAATAGTTACCG+AGG - Chr8:69078755-69078774 MsG0880046104.01.T01:intron 40.0%
ATAGTTACCGAGGACTCAAT+AGG - Chr8:69078765-69078784 MsG0880046104.01.T01:intron 40.0%
ATGCAGAAGACAAATTGGCA+AGG + Chr8:69079271-69079290 None:intergenic 40.0%
CACCTGAGAATATCTCTGTT+GGG - Chr8:69077996-69078015 MsG0880046104.01.T01:CDS 40.0%
CAGAGGCAAGAAGAAGAAAA+TGG - Chr8:69079714-69079733 MsG0880046104.01.T01:CDS 40.0%
CCATTAAGTAGTTCAGCTTC+AGG + Chr8:69079835-69079854 None:intergenic 40.0%
CCTGAAGCTGAACTACTTAA+TGG - Chr8:69079832-69079851 MsG0880046104.01.T01:CDS 40.0%
CTTGGGATTTGATGCAGTTT+AGG - Chr8:69078104-69078123 MsG0880046104.01.T01:intron 40.0%
GACCACTAGACTAATTCTTC+AGG + Chr8:69078471-69078490 None:intergenic 40.0%
GGAAAAATGGTACCACTGAT+TGG - Chr8:69078125-69078144 MsG0880046104.01.T01:intron 40.0%
GTGGGAAGGATATGGTAAAA+TGG - Chr8:69079065-69079084 MsG0880046104.01.T01:intron 40.0%
GTGGTTGAGATTCTAGTAAG+AGG + Chr8:69077833-69077852 None:intergenic 40.0%
TAAAGAGGTTGTTGCTGTGA+TGG + Chr8:69077877-69077896 None:intergenic 40.0%
TAAGTGGTACTGTGGTAGTA+AGG - Chr8:69078345-69078364 MsG0880046104.01.T01:intron 40.0%
TACATGGAAAGACATGGTTG+TGG - Chr8:69079304-69079323 MsG0880046104.01.T01:intron 40.0%
TGCATGATACCCAAGAAGAA+AGG + Chr8:69079939-69079958 None:intergenic 40.0%
TGGTAGTAAGGTTTCACCTA+TGG - Chr8:69078357-69078376 MsG0880046104.01.T01:intron 40.0%
TGTCATTGCTGGATGATTCT+GGG + Chr8:69079751-69079770 None:intergenic 40.0%
TTGAAGAGAGGTGAAAGATC+TGG - Chr8:69079034-69079053 MsG0880046104.01.T01:intron 40.0%
TTGAGTCCTCGGTAACTATT+TGG + Chr8:69078764-69078783 None:intergenic 40.0%
TTGTCATTGCTGGATGATTC+TGG + Chr8:69079752-69079771 None:intergenic 40.0%
TTTCTTCTTGGGTATCATGC+AGG - Chr8:69079938-69079957 MsG0880046104.01.T01:CDS 40.0%
TTTGAGTCCTCGGTAACTAT+TGG + Chr8:69078965-69078984 None:intergenic 40.0%
TTTGGAGAGTGAAGAATGAG+TGG + Chr8:69077852-69077871 None:intergenic 40.0%
TTTGTTGAGTGGGAAGGATA+TGG - Chr8:69079057-69079076 MsG0880046104.01.T01:intron 40.0%
! AACTATTGGCTGTTTGACGT+TGG + Chr8:69078951-69078970 None:intergenic 40.0%
! CTATTTGGCTGTATTGACGT+TGG + Chr8:69078749-69078768 None:intergenic 40.0%
! CTTCTTCTTGCCTCTGAAAA+TGG + Chr8:69079710-69079729 None:intergenic 40.0%
! GAAGAATTAGTCTAGTGGTC+TGG - Chr8:69078471-69078490 MsG0880046104.01.T01:intron 40.0%
! GCGACTACTAGTTTAGTAGA+CGG - Chr8:69079423-69079442 MsG0880046104.01.T01:intron 40.0%
! GCTCTTGATTTTTGCAAAGC+AGG + Chr8:69079170-69079189 None:intergenic 40.0%
! GGGTGATTCTCTTTTACAGT+TGG - Chr8:69079575-69079594 MsG0880046104.01.T01:intron 40.0%
! GGGTTTTACATGGAAAGACA+TGG - Chr8:69079298-69079317 MsG0880046104.01.T01:intron 40.0%
! TCCCTGAAGAATTAGTCTAG+TGG - Chr8:69078466-69078485 MsG0880046104.01.T01:intron 40.0%
!! CATTTTGGCAGGGTTTTACA+TGG - Chr8:69079288-69079307 MsG0880046104.01.T01:intron 40.0%
!! GAAAGATCTGGTTTGTTGAG+TGG - Chr8:69079046-69079065 MsG0880046104.01.T01:intron 40.0%
!! TTGTCTTCTGCATTTTGGCA+GGG - Chr8:69079278-69079297 MsG0880046104.01.T01:intron 40.0%
!! TTTGTCTTCTGCATTTTGGC+AGG - Chr8:69079277-69079296 MsG0880046104.01.T01:intron 40.0%
!!! CTGCTTTTTGAGTTGAAGAG+AGG - Chr8:69079022-69079041 MsG0880046104.01.T01:intron 40.0%
!!! TGGTTTTGTGGATCCTAGAT+GGG - Chr8:69078072-69078091 MsG0880046104.01.T01:CDS 40.0%
AACTCTTCTCTTCGTAGCAG+TGG - Chr8:69080054-69080073 MsG0880046104.01.T01:five_prime_UTR 45.0%
AAGAGGTTGTTGCTGTGATG+GGG + Chr8:69077875-69077894 None:intergenic 45.0%
ACAAGCAATGGCAAGCAACT+TGG - Chr8:69080152-69080171 MsG0880046104.01.T01:five_prime_UTR 45.0%
ACAGAGATATTCTCAGGTGG+TGG + Chr8:69077995-69078014 None:intergenic 45.0%
ACTCTTCTCTTCGTAGCAGT+GGG - Chr8:69080055-69080074 MsG0880046104.01.T01:five_prime_UTR 45.0%
AGTAGTTCAGCTTCAGGAGA+TGG + Chr8:69079829-69079848 None:intergenic 45.0%
CAAACAGCCAATAGTTACCG+AGG - Chr8:69078955-69078974 MsG0880046104.01.T01:intron 45.0%
CAAGCACTTGGACTCATCAA+TGG - Chr8:69078644-69078663 MsG0880046104.01.T01:intron 45.0%
CACTAATGCATCAACCACAC+CGG + Chr8:69078692-69078711 None:intergenic 45.0%
CACTACAGGATTGTCATTGC+TGG + Chr8:69079762-69079781 None:intergenic 45.0%
CCAAACACCTATTGAGTCCT+CGG + Chr8:69078775-69078794 None:intergenic 45.0%
CCAACAGAGATATTCTCAGG+TGG + Chr8:69077998-69078017 None:intergenic 45.0%
CCACCTGAGAATATCTCTGT+TGG - Chr8:69077995-69078014 MsG0880046104.01.T01:CDS 45.0%
GAGAGAGGGAGAATAAAGGA+AGG + Chr8:69077922-69077941 None:intergenic 45.0%
GAGATAGAAGTGAGAGAGAG+AGG - Chr8:69077661-69077680 MsG0880046104.01.T01:CDS 45.0%
GTACTTGTGCCCATTCTCAA+AGG - Chr8:69077636-69077655 MsG0880046104.01.T01:CDS 45.0%
GTCCCAACAGAGATATTCTC+AGG + Chr8:69078001-69078020 None:intergenic 45.0%
GTCTGAGAGTGAGAGTAAAG+AGG + Chr8:69077892-69077911 None:intergenic 45.0%
TATCTGGTCGATAGCTTGAC+AGG - Chr8:69079992-69080011 MsG0880046104.01.T01:CDS 45.0%
TATTGACGTTGGACTTTCCC+TGG + Chr8:69078738-69078757 None:intergenic 45.0%
TCAAGAGCCCTATAGCTTCT+CGG - Chr8:69079182-69079201 MsG0880046104.01.T01:intron 45.0%
TCCAAACACCTTTGAGTCCT+CGG + Chr8:69078975-69078994 None:intergenic 45.0%
TGAAGCTCTCAAAGGAGAGA+GGG + Chr8:69077936-69077955 None:intergenic 45.0%
TGAGGTGAAGTGAACTAGTG+AGG + Chr8:69077606-69077625 None:intergenic 45.0%
TGGGATGCTGTTATTGATGC+TGG - Chr8:69078145-69078164 MsG0880046104.01.T01:intron 45.0%
TTGACACCTCCATTGTACCT+TGG - Chr8:69079783-69079802 MsG0880046104.01.T01:CDS 45.0%
! ATTAGTCTAGTGGTCTGGGT+TGG - Chr8:69078476-69078495 MsG0880046104.01.T01:intron 45.0%
! CCATGCCTTTTCCACTATGT+GGG + Chr8:69078593-69078612 None:intergenic 45.0%
! GAGGAGGTTAAGGTTTCTAG+TGG - Chr8:69078052-69078071 MsG0880046104.01.T01:CDS 45.0%
! TCTTGCCTCTGAAAATGGGA+AGG + Chr8:69079705-69079724 None:intergenic 45.0%
! TTCCTTCTTCTGGGAAATGC+CGG - Chr8:69078670-69078689 MsG0880046104.01.T01:intron 45.0%
! TTGGTCCTTCCCATTTTCAG+AGG - Chr8:69079697-69079716 MsG0880046104.01.T01:CDS 45.0%
!! AAAAGCACAGGGGTTTTAGC+TGG - Chr8:69079141-69079160 MsG0880046104.01.T01:intron 45.0%
!! ATCTGGTTTGTTGAGTGGGA+AGG - Chr8:69079051-69079070 MsG0880046104.01.T01:intron 45.0%
!! ATGGAGGTGTCAAACACTAC+AGG + Chr8:69079776-69079795 None:intergenic 45.0%
!!! GTGGTTTTGTGGATCCTAGA+TGG - Chr8:69078071-69078090 MsG0880046104.01.T01:CDS 45.0%
AACGTGGCCGAGAAGCTATA+GGG + Chr8:69079192-69079211 None:intergenic 50.0%
ACACCTCCATTGTACCTTGG+TGG - Chr8:69079786-69079805 MsG0880046104.01.T01:CDS 50.0%
ACCTTAACCTCCTCAGCAAC+AGG + Chr8:69078046-69078065 None:intergenic 50.0%
ATCCACCATAGCCGTGTCAA+CGG + Chr8:69079215-69079234 None:intergenic 50.0%
CACCTCCATTGTACCTTGGT+GGG - Chr8:69079787-69079806 MsG0880046104.01.T01:CDS 50.0%
CAGCACCTTGGACTCATCAA+TGG - Chr8:69078843-69078862 MsG0880046104.01.T01:intron 50.0%
CCGAGGACTCAATAGGTGTT+TGG - Chr8:69078772-69078791 MsG0880046104.01.T01:intron 50.0%
CTCTTCTCTTCGTAGCAGTG+GGG - Chr8:69080056-69080075 MsG0880046104.01.T01:five_prime_UTR 50.0%
CTGAAGCTCTCAAAGGAGAG+AGG + Chr8:69077937-69077956 None:intergenic 50.0%
GTCGATAGCTTGACAGGAGT+AGG - Chr8:69079998-69080017 MsG0880046104.01.T01:CDS 50.0%
GTTCCAGCTGAAGCTCTCAA+AGG + Chr8:69077944-69077963 None:intergenic 50.0%
GTTTGACGTTGGACTTTCCC+TGG + Chr8:69078940-69078959 None:intergenic 50.0%
TACTGCTGGCATGTGTTCCA+GGG - Chr8:69078920-69078939 MsG0880046104.01.T01:intron 50.0%
TCCTGTTGCTGAGGAGGTTA+AGG - Chr8:69078042-69078061 MsG0880046104.01.T01:CDS 50.0%
TCTTCTCTTCGTAGCAGTGG+GGG - Chr8:69080057-69080076 MsG0880046104.01.T01:five_prime_UTR 50.0%
TTACTGCTGGCATGTGTTCC+AGG - Chr8:69078919-69078938 MsG0880046104.01.T01:intron 50.0%
TTCTGCTGTTCCTGTTGCTG+AGG - Chr8:69078033-69078052 MsG0880046104.01.T01:CDS 50.0%
! CCCACATAGTGGAAAAGGCA+TGG - Chr8:69078590-69078609 MsG0880046104.01.T01:intron 50.0%
! CTGGGTTGGAACTCTGAAGA+AGG - Chr8:69078490-69078509 MsG0880046104.01.T01:intron 50.0%
! CTTGGTGGGCATGGATCAAA+AGG - Chr8:69079801-69079820 MsG0880046104.01.T01:CDS 50.0%
! CTTTTGATCCATGCCCACCA+AGG + Chr8:69079803-69079822 None:intergenic 50.0%
! GCCATGCCTTTTCCACTATG+TGG + Chr8:69078594-69078613 None:intergenic 50.0%
! GTTGTTGCTGTGATGGGGTT+TGG + Chr8:69077870-69077889 None:intergenic 50.0%
! GTTTGCTGGCATGTGTTCCA+GGG - Chr8:69078718-69078737 MsG0880046104.01.T01:intron 50.0%
! TCTCCTTTGAGAGCTTCAGC+TGG - Chr8:69077938-69077957 MsG0880046104.01.T01:CDS 50.0%
!! ACCGAGGACTCAAAGGTGTT+TGG - Chr8:69078971-69078990 MsG0880046104.01.T01:intron 50.0%
!! AGTTTGCTGGCATGTGTTCC+AGG - Chr8:69078717-69078736 MsG0880046104.01.T01:intron 50.0%
!! TAGATGGGTTGCTGGGACTT+GGG - Chr8:69078087-69078106 MsG0880046104.01.T01:intron 50.0%
!! TGGATCCTAGATGGGTTGCT+GGG - Chr8:69078080-69078099 MsG0880046104.01.T01:intron 50.0%
ACGTTCCGTTGACACGGCTA+TGG - Chr8:69079207-69079226 MsG0880046104.01.T01:intron 55.0%
AGTGTGTTTCATGGTCGGCG+TGG + Chr8:69078804-69078823 None:intergenic 55.0%
ATAGCCGTGTCAACGGAACG+TGG + Chr8:69079208-69079227 None:intergenic 55.0%
CAAGTCCCAGCAACCCATCT+AGG + Chr8:69078088-69078107 None:intergenic 55.0%
CACCGGCATTTCCCAGAAGA+AGG + Chr8:69078675-69078694 None:intergenic 55.0%
CCATGCCCACCAAGGTACAA+TGG + Chr8:69079795-69079814 None:intergenic 55.0%
CTTCTCTTCGTAGCAGTGGG+GGG - Chr8:69080058-69080077 MsG0880046104.01.T01:five_prime_UTR 55.0%
GAACGTGGCCGAGAAGCTAT+AGG + Chr8:69079193-69079212 None:intergenic 55.0%
GCAATGGCAAGCAACTTGGC+AGG - Chr8:69080156-69080175 MsG0880046104.01.T01:five_prime_UTR 55.0%
GTGTGTGCGTAGCAAGCACT+TGG - Chr8:69078632-69078651 MsG0880046104.01.T01:intron 55.0%
GTGTGTTTCATGGTCGGCGT+TGG + Chr8:69078803-69078822 None:intergenic 55.0%
TGCCCACCAAGGTACAATGG+AGG + Chr8:69079792-69079811 None:intergenic 55.0%
TGCTGTTCCTGTTGCTGAGG+AGG - Chr8:69078036-69078055 MsG0880046104.01.T01:CDS 55.0%
TTCCGTTGACACGGCTATGG+TGG - Chr8:69079210-69079229 MsG0880046104.01.T01:intron 55.0%
! CCATTGTACCTTGGTGGGCA+TGG - Chr8:69079792-69079811 MsG0880046104.01.T01:CDS 55.0%
! TCTTCTGGGAAATGCCGGTG+TGG - Chr8:69078675-69078694 MsG0880046104.01.T01:intron 55.0%
!! CTAGATGGGTTGCTGGGACT+TGG - Chr8:69078086-69078105 MsG0880046104.01.T01:intron 55.0%
!! GTGGATCCTAGATGGGTTGC+TGG - Chr8:69078079-69078098 MsG0880046104.01.T01:intron 55.0%
!! TGGGGGGAGTACTTCTCATC+AGG - Chr8:69080074-69080093 MsG0880046104.01.T01:five_prime_UTR 55.0%
GAGTGTGCGTAGCAGCACCT+TGG - Chr8:69078831-69078850 MsG0880046104.01.T01:intron 60.0%
GCAGGTCGTGCCGCAATGAT+AGG - Chr8:69079956-69079975 MsG0880046104.01.T01:CDS 60.0%
TCGGCCACGTTCCGTTGACA+CGG - Chr8:69079201-69079220 MsG0880046104.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 69077602 69080210 69077602 ID=MsG0880046104.01;Name=MsG0880046104.01
Chr8 mRNA 69077602 69080210 69077602 ID=MsG0880046104.01.T01;Parent=MsG0880046104.01;Name=MsG0880046104.01.T01;_AED=0.49;_eAED=0.49;_QI=189|1|0.5|1|1|1|2|0|289
Chr8 exon 69077602 69078095 69077602 ID=MsG0880046104.01.T01:exon:15785;Parent=MsG0880046104.01.T01
Chr8 exon 69079646 69080210 69079646 ID=MsG0880046104.01.T01:exon:15784;Parent=MsG0880046104.01.T01
Chr8 five_prime_UTR 69080022 69080210 69080022 ID=MsG0880046104.01.T01:five_prime_utr;Parent=MsG0880046104.01.T01
Chr8 CDS 69079646 69080021 69079646 ID=MsG0880046104.01.T01:cds;Parent=MsG0880046104.01.T01
Chr8 CDS 69077602 69078095 69077602 ID=MsG0880046104.01.T01:cds;Parent=MsG0880046104.01.T01
Gene Sequence

>MsG0880046104.01.T01

ATGTCAACAACTATGTCTATGTCTATGGCTTCTTTTTCTCCTCTTACTAGAATCTCAACCACTCATTCTTCACTCTCCAAACCCCATCACAGCAACAACCTCTTTACTCTCACTCTCAGACCAAAAAACCTTCCTTTATTCTCCCTCTCTCCTTTGAGAGCTTCAGCTGGAACTTCTGATTCAGCTGAAACTGCAGTGAAACCACCACCTGAGAATATCTCTGTTGGGACAAATGGGTCTGCTTCTGCTGTTCCTGTTGCTGAGGAGGTTAAGGTTTCTAGTGGTTTTGTGGATCCTAGATGGGTTGCTGGGACTTGGGATTTGATGCAGTTTAGGAAAAATGGTACCACTGATTGGGATGCTGTTATTGATGCTGAGGCAAGAAGAAGAAAATGGCTCGAGACTAACCCAGAATCATCCAGCAATGACAATCCTGTAGTGTTTGACACCTCCATTGTACCTTGGTGGGCATGGATCAAAAGGTTCCATCTCCTGAAGCTGAACTACTTAATGGTCAGTTTTGTTTTGTATTCTAAAATGAAACGAGAAAGTAAAGGTTGTTTTTCGATAAGAGGGAAAAAATCAACTTTGTTAACCTTTCTTCTTGGGTATCATGCAGGTCGTGCCGCAATGATAGGATTCTTTATGACATATCTGGTCGATAGCTTGACAGGAGTAGGTCTTGTTGACCAAATGAACAACTTCTTTTGCAAAACTCTTCTCTTCGTAGCAGTGGGGGGAGTACTTCTCATCAGGAAGAATGAGGATGTTGATACTTTTAAGAAATTATTGGAGGAGACTACATTTTATGACAAGCAATGGCAAGCAACTTGGCAGGATGAGAACTCAAGCACTTCCAAAAAAGATTAG

Protein sequence

>MsG0880046104.01.T01

MSTTMSMSMASFSPLTRISTTHSSLSKPHHSNNLFTLTLRPKNLPLFSLSPLRASAGTSDSAETAVKPPPENISVGTNGSASAVPVAEEVKVSSGFVDPRWVAGTWDLMQFRKNGTTDWDAVIDAEARRRKWLETNPESSSNDNPVVFDTSIVPWWAWIKRFHLLKLNYLMVSFVLYSKMKRESKGCFSIRGKKSTLLTFLLGYHAGRAAMIGFFMTYLVDSLTGVGLVDQMNNFFCKTLLFVAVGGVLLIRKNEDVDTFKKLLEETTFYDKQWQATWQDENSSTSKKD*