AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007800.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007800.01.T01 MTR_2g032540 81.933 238 8 1 8 210 58 295 3.86e-135 380
MsG0280007800.01.T01 MTR_1g108440 29.018 224 122 4 12 203 50 268 4.76e-21 88.6
MsG0280007800.01.T01 MTR_7g114900 27.232 224 125 5 12 203 63 280 1.90e-20 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007800.01.T01 AT5G44520 56.757 222 60 1 8 193 47 268 3.48e-83 249
MsG0280007800.01.T01 AT5G44520 56.757 222 60 1 8 193 77 298 4.91e-83 249
MsG0280007800.01.T01 AT3G04790 28.000 225 120 6 13 203 60 276 7.49e-18 80.1
MsG0280007800.01.T01 AT1G71100 27.876 226 128 6 12 204 43 266 1.46e-16 76.3
MsG0280007800.01.T01 AT2G01290 28.125 224 123 5 12 203 47 264 2.35e-16 75.9

Find 69 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATGAACACTAGCTTAT+TGG 0.176993 2:-20736006 None:intergenic
GTAAATGAGAGATTAAAATT+AGG 0.251296 2:+20738008 MsG0280007800.01.T01:three_prime_UTR
CTTATTGGCGTTATTCAGTA+TGG 0.270145 2:-20735991 None:intergenic
TCCAAATGGGTTGAACGTTT+TGG 0.288932 2:+20737911 MsG0280007800.01.T01:CDS
TTGGGGTCTGGTCATGCTTC+TGG 0.291464 2:+20735099 MsG0280007800.01.T01:CDS
TCCAAAACGTTCAACCCATT+TGG 0.340232 2:-20737912 None:intergenic
TCTTATATATCTCCCCTTTG+TGG 0.349512 2:+20737979 MsG0280007800.01.T01:three_prime_UTR
CTTACAGACTGAATTAAAAC+TGG 0.355408 2:-20736068 None:intergenic
ACATAGCATTGTCGCATAAC+AGG 0.356957 2:-20738176 None:intergenic
GAGATTGACGATATGTTTCT+TGG 0.357712 2:+20736189 MsG0280007800.01.T01:CDS
GGTATGGCCATTCAGCATTT+AGG 0.364770 2:+20735120 MsG0280007800.01.T01:CDS
TAAATGAGAGATTAAAATTA+GGG 0.375557 2:+20738009 MsG0280007800.01.T01:three_prime_UTR
AACTTACCAAGGCTTGGTAT+TGG 0.380544 2:-20736991 None:intergenic
GGTAATTTGAAAGACATAGT+AGG 0.399152 2:+20735159 MsG0280007800.01.T01:CDS
GTGAAAAGTGGCATGGTTGT+AGG 0.420807 2:+20735075 MsG0280007800.01.T01:CDS
AGTGGCATGGTTGTAGGATT+GGG 0.431364 2:+20735081 MsG0280007800.01.T01:CDS
GTGGTAATTGCATCTCCAAA+TGG 0.437485 2:+20737897 MsG0280007800.01.T01:CDS
GTATTACTTGCAGCTGAAGT+AGG 0.439510 2:+20737070 MsG0280007800.01.T01:intron
ATCATGTTGAAATAGAAAAT+CGG 0.444502 2:-20738107 None:intergenic
AAGTGGCATGGTTGTAGGAT+TGG 0.446137 2:+20735080 MsG0280007800.01.T01:CDS
TGTGGAGAAGACCAGCTATT+GGG 0.457431 2:+20736890 MsG0280007800.01.T01:CDS
AAAATCCTTGATAAAATTGA+TGG 0.458697 2:+20737094 MsG0280007800.01.T01:CDS
GCAAGTGAAGCAGCAAAGGC+TGG 0.460488 2:+20735416 MsG0280007800.01.T01:CDS
AAATCAGTACAAAGGTGGTC+TGG 0.462020 2:+20736034 MsG0280007800.01.T01:CDS
GTCTGGTCATGCTTCTGGTA+TGG 0.462156 2:+20735104 MsG0280007800.01.T01:CDS
AGCAAAGGCTGGGATTCCTT+TGG 0.462918 2:+20735427 MsG0280007800.01.T01:CDS
TCAAATTACCATGACGAAGT+TGG 0.465952 2:-20735146 None:intergenic
ATGGTTGTAGGATTGGGGTC+TGG 0.471721 2:+20735087 MsG0280007800.01.T01:CDS
GGACCTGCTTGCCCAATAGC+TGG 0.480422 2:-20736901 None:intergenic
CATTTACATTCATCCACAAA+GGG 0.480803 2:-20737992 None:intergenic
GACTGCAGATGTAGTGGGTT+AGG 0.487152 2:+20737941 MsG0280007800.01.T01:CDS
GTGTGGAGAAGACCAGCTAT+TGG 0.489328 2:+20736889 MsG0280007800.01.T01:CDS
ACAATGCTATGTACTCTCTT+TGG 0.492190 2:+20738187 MsG0280007800.01.T01:three_prime_UTR
TATTACTTGCAGCTGAAGTA+GGG 0.507980 2:+20737071 MsG0280007800.01.T01:intron
TGGTAATTGCATCTCCAAAT+GGG 0.508882 2:+20737898 MsG0280007800.01.T01:CDS
TCTATTTCAACATGATGTCA+TGG 0.523009 2:+20738114 MsG0280007800.01.T01:three_prime_UTR
AGACCAGCTATTGGGCAAGC+AGG 0.523384 2:+20736898 MsG0280007800.01.T01:CDS
GTAATTTGAAAGACATAGTA+GGG 0.524182 2:+20735160 MsG0280007800.01.T01:CDS
AGGCAGAACTTACCAAGGCT+TGG 0.536554 2:-20736997 None:intergenic
TGTCCTTCTCCTGTGACTAG+TGG 0.537726 2:-20736940 None:intergenic
TCATTTACATTCATCCACAA+AGG 0.550614 2:-20737993 None:intergenic
CAGTACAAAGGTGGTCTGGA+AGG 0.553834 2:+20736038 MsG0280007800.01.T01:CDS
TGCACACTTGAGAATTGTCT+TGG 0.555235 2:-20735457 None:intergenic
ACATCTCCAATACCAAGCCT+TGG 0.560116 2:+20736985 MsG0280007800.01.T01:CDS
AAGTGCAAGTGAAGCAGCAA+AGG 0.564860 2:+20735412 MsG0280007800.01.T01:CDS
CAAGTGAAGCAGCAAAGGCT+GGG 0.565259 2:+20735417 MsG0280007800.01.T01:CDS
CAAATTGACTGCAGATGTAG+TGG 0.573359 2:+20737935 MsG0280007800.01.T01:CDS
ATTGGGCAAGCAGGTCCACT+AGG 0.576262 2:+20736907 MsG0280007800.01.T01:CDS
TTACTTGTAGCTCAACTGGT+TGG 0.576510 2:+20736155 MsG0280007800.01.T01:intron
TTGGCGACCTAAATGCTGAA+TGG 0.590309 2:-20735127 None:intergenic
TTTCCACTAGTCACAGGAGA+AGG 0.598318 2:+20736937 MsG0280007800.01.T01:CDS
GTGGATACATACGTGAAAAG+TGG 0.600025 2:+20735063 MsG0280007800.01.T01:CDS
ATTGAAGAAAATCAGTACAA+AGG 0.614464 2:+20736026 MsG0280007800.01.T01:CDS
TAGGGATGTTACACTTACAG+TGG 0.619328 2:+20738027 MsG0280007800.01.T01:three_prime_UTR
GGTGACTTTCCACTAGTCAC+AGG 0.620541 2:+20736931 MsG0280007800.01.T01:CDS
GAAGAAAATCAGTACAAAGG+TGG 0.624488 2:+20736029 MsG0280007800.01.T01:CDS
TTGTCTTGGTAGGTATCCAA+AGG 0.624910 2:-20735443 None:intergenic
CACTTGAGAATTGTCTTGGT+AGG 0.625596 2:-20735453 None:intergenic
GTGGCATGGTTGTAGGATTG+GGG 0.627903 2:+20735082 MsG0280007800.01.T01:CDS
TATGTTTCTTGGTGATGCTG+AGG 0.632074 2:+20736200 MsG0280007800.01.T01:CDS
TTAGGTCGCCAACTTCGTCA+TGG 0.632841 2:+20735138 MsG0280007800.01.T01:CDS
TTTGTAATGCAGATGTACAG+TGG 0.647555 2:+20737878 MsG0280007800.01.T01:intron
AGTGGAAAGTCACCACCTAG+TGG 0.652713 2:-20736922 None:intergenic
AGTTGCGCGTGAGTGCATGT+AGG 0.667303 2:-20738084 None:intergenic
ATTGATGGTGTTGCAGACCA+TGG 0.679648 2:+20737109 MsG0280007800.01.T01:CDS
AAATTGACTGCAGATGTAGT+GGG 0.681003 2:+20737936 MsG0280007800.01.T01:CDS
TACATACGTGAAAAGTGGCA+TGG 0.683969 2:+20735068 MsG0280007800.01.T01:CDS
GGGCAAGCAGGTCCACTAGG+TGG 0.688474 2:+20736910 MsG0280007800.01.T01:CDS
ATTTACATTCATCCACAAAG+GGG 0.699853 2:-20737991 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAGTAAATTTAAGTT+TGG + Chr2:20735672-20735691 MsG0280007800.01.T01:intron 10.0%
!!! ATAATGTATTATTAGTTTTT+TGG + Chr2:20736670-20736689 MsG0280007800.01.T01:intron 10.0%
!!! TTTAATAATTTTTGTCTTAA+AGG - Chr2:20737332-20737351 None:intergenic 10.0%
!! TAAATGAGAGATTAAAATTA+GGG + Chr2:20738009-20738028 MsG0280007800.01.T01:three_prime_UTR 15.0%
!! TCTAATTATATAAAAACAAC+AGG - Chr2:20737384-20737403 None:intergenic 15.0%
!!! TGAATTTTTTTTCTTCATAT+AGG + Chr2:20735240-20735259 MsG0280007800.01.T01:intron 15.0%
!!! TTGTTTTTCTTTGTATAATA+AGG + Chr2:20736867-20736886 MsG0280007800.01.T01:intron 15.0%
!! AAAATCCTTGATAAAATTGA+TGG + Chr2:20737094-20737113 MsG0280007800.01.T01:CDS 20.0%
!! ATCATGTTGAAATAGAAAAT+CGG - Chr2:20738110-20738129 None:intergenic 20.0%
!! GAATGAATATATTAAGAGAA+AGG - Chr2:20736563-20736582 None:intergenic 20.0%
!! GTAAATGAGAGATTAAAATT+AGG + Chr2:20738008-20738027 MsG0280007800.01.T01:three_prime_UTR 20.0%
!! TAAATATAATTGTAATGAGC+AGG - Chr2:20736847-20736866 None:intergenic 20.0%
!! TAGAACTTCTTAACAAATTT+CGG + Chr2:20737400-20737419 MsG0280007800.01.T01:intron 20.0%
!!! AAAAACTTTTCCAATATGTA+GGG + Chr2:20736376-20736395 MsG0280007800.01.T01:intron 20.0%
!!! AAATCATTTTACATTGATAG+TGG - Chr2:20736636-20736655 None:intergenic 20.0%
!!! AACTTTTATTTTATGCTCTT+TGG + Chr2:20737164-20737183 MsG0280007800.01.T01:intron 20.0%
!!! GTATATTTTATCCCTTATTT+CGG + Chr2:20737596-20737615 MsG0280007800.01.T01:intron 20.0%
!!! TAAAAACTTTTCCAATATGT+AGG + Chr2:20736375-20736394 MsG0280007800.01.T01:intron 20.0%
!!! TATTGATTAAAATCAGAGAA+AGG - Chr2:20735207-20735226 None:intergenic 20.0%
!!! TTTTAGATATGTGTTTTGTT+TGG + Chr2:20735037-20735056 MsG0280007800.01.T01:intron 20.0%
! AAAAGTTGAGAGAAAACTAA+CGG - Chr2:20737151-20737170 None:intergenic 25.0%
! AAATAGTGAGAATGACATAA+AGG + Chr2:20736308-20736327 MsG0280007800.01.T01:intron 25.0%
! AAGAAAAACTCAGAAAAAGA+GGG - Chr2:20736239-20736258 None:intergenic 25.0%
! AAGAAAATGTTAGATCTGAT+TGG + Chr2:20736271-20736290 MsG0280007800.01.T01:intron 25.0%
! ACATCTGCATTACAAAATAA+TGG - Chr2:20737874-20737893 None:intergenic 25.0%
! ACTCATGGAACTAAATAAAT+AGG - Chr2:20737696-20737715 None:intergenic 25.0%
! AGTCCAAATATTAGAGATAA+AGG - Chr2:20736431-20736450 None:intergenic 25.0%
! ATTGAAGAAAATCAGTACAA+AGG + Chr2:20736026-20736045 MsG0280007800.01.T01:CDS 25.0%
! CAAGAAATACTCAACATTAA+AGG - Chr2:20735507-20735526 None:intergenic 25.0%
! CTACCTTTATCTCTAATATT+TGG + Chr2:20736425-20736444 MsG0280007800.01.T01:intron 25.0%
! GTAATTTGAAAGACATAGTA+GGG + Chr2:20735160-20735179 MsG0280007800.01.T01:CDS 25.0%
! GTTCTACTAAATTAATGCAT+TGG + Chr2:20737760-20737779 MsG0280007800.01.T01:intron 25.0%
! TCATTCATCTTCCAATTAAA+TGG - Chr2:20735014-20735033 None:intergenic 25.0%
! TGAATATATTAAGAGAAAGG+TGG - Chr2:20736560-20736579 None:intergenic 25.0%
! TGGATATCTTGATATAAGTT+AGG + Chr2:20735692-20735711 MsG0280007800.01.T01:intron 25.0%
! TTCACCATGTATAAAATTGT+CGG + Chr2:20735320-20735339 MsG0280007800.01.T01:intron 25.0%
! TTTCTTTGTATAATAAGGTG+TGG + Chr2:20736872-20736891 MsG0280007800.01.T01:intron 25.0%
!! AAAATTGTCGGCATATTTTA+GGG + Chr2:20735332-20735351 MsG0280007800.01.T01:intron 25.0%
!! AATAATGAACACTAGCTTAT+TGG - Chr2:20736009-20736028 None:intergenic 25.0%
!! TAAAATTGTCGGCATATTTT+AGG + Chr2:20735331-20735350 MsG0280007800.01.T01:intron 25.0%
!! TATTTGTTAATTGATCCAAG+AGG + Chr2:20736767-20736786 MsG0280007800.01.T01:intron 25.0%
!! TTGGTGATTATCCATTTAAT+TGG + Chr2:20735000-20735019 MsG0280007800.01.T01:intron 25.0%
!!! CAATTGTTTCTTTTCTTGTT+TGG + Chr2:20736588-20736607 MsG0280007800.01.T01:intron 25.0%
!!! TCATGTATGTTTTTTATGCT+TGG + Chr2:20734981-20735000 MsG0280007800.01.T01:intron 25.0%
!!! TGAGTATTTCTTGTTTTAGA+GGG + Chr2:20735514-20735533 MsG0280007800.01.T01:intron 25.0%
!!! TTATTTTATGCTCTTTGGAT+AGG + Chr2:20737169-20737188 MsG0280007800.01.T01:intron 25.0%
!!! TTGAGTATTTCTTGTTTTAG+AGG + Chr2:20735513-20735532 MsG0280007800.01.T01:intron 25.0%
AAAGTTGAGAGAAAACTAAC+GGG - Chr2:20737150-20737169 None:intergenic 30.0%
AAGAGAATGCAGAAAAACAT+GGG - Chr2:20736806-20736825 None:intergenic 30.0%
ATATAGTAGAAACATGCTTC+AGG - Chr2:20736517-20736536 None:intergenic 30.0%
ATTTACATTCATCCACAAAG+GGG - Chr2:20737994-20738013 None:intergenic 30.0%
CAACAAACATCAATGCTAAA+TGG - Chr2:20735380-20735399 None:intergenic 30.0%
CAAGATGTTTAAAAGTGACT+AGG - Chr2:20737741-20737760 None:intergenic 30.0%
CATCTAATCAATTCTTCTTG+AGG + Chr2:20736460-20736479 MsG0280007800.01.T01:intron 30.0%
CATTTACATTCATCCACAAA+GGG - Chr2:20737995-20738014 None:intergenic 30.0%
CTCAAGAAGAATTGATTAGA+TGG - Chr2:20736462-20736481 None:intergenic 30.0%
CTTACAGACTGAATTAAAAC+TGG - Chr2:20736071-20736090 None:intergenic 30.0%
GAAGAAAAACTCAGAAAAAG+AGG - Chr2:20736240-20736259 None:intergenic 30.0%
GGTAATTTGAAAGACATAGT+AGG + Chr2:20735159-20735178 MsG0280007800.01.T01:CDS 30.0%
TAAGAGAATGCAGAAAAACA+TGG - Chr2:20736807-20736826 None:intergenic 30.0%
TCATTTACATTCATCCACAA+AGG - Chr2:20737996-20738015 None:intergenic 30.0%
TCTATTTCAACATGATGTCA+TGG + Chr2:20738114-20738133 MsG0280007800.01.T01:three_prime_UTR 30.0%
TGATTAAAATCAGAGAAAGG+AGG - Chr2:20735204-20735223 None:intergenic 30.0%
TTCACCATGTTCAAAATTGT+CGG - Chr2:20735266-20735285 None:intergenic 30.0%
TTTGGCAAAAAGAAATACGA+AGG + Chr2:20737621-20737640 MsG0280007800.01.T01:intron 30.0%
! AAAACAAAGAGGTGCAAAAA+GGG + Chr2:20737565-20737584 MsG0280007800.01.T01:intron 30.0%
! AATTTTACTTGTAGCTCAAC+TGG + Chr2:20736151-20736170 MsG0280007800.01.T01:intron 30.0%
! ATCAACAATAACGAGTTTTG+CGG + Chr2:20738054-20738073 MsG0280007800.01.T01:three_prime_UTR 30.0%
! CAACACCATCAATTTTATCA+AGG - Chr2:20737102-20737121 None:intergenic 30.0%
! TATGCCGACAATTTTATACA+TGG - Chr2:20735327-20735346 None:intergenic 30.0%
!! GAGATCTTTTGAAAACAAAG+AGG + Chr2:20737554-20737573 MsG0280007800.01.T01:intron 30.0%
!! TCTTTAGGAAAATTTTCACC+AGG - Chr2:20735576-20735595 None:intergenic 30.0%
!!! AGATATGTGTTTTGTTTGGT+AGG + Chr2:20735041-20735060 MsG0280007800.01.T01:intron 30.0%
!!! TTCTTGTTTTAGAGGGTATT+TGG + Chr2:20735521-20735540 MsG0280007800.01.T01:intron 30.0%
AAACAACAGGAGAAAAAGCA+GGG - Chr2:20735966-20735985 None:intergenic 35.0%
AAATTGACTGCAGATGTAGT+GGG + Chr2:20737936-20737955 MsG0280007800.01.T01:CDS 35.0%
AAGTTGAGAGAAAACTAACG+GGG - Chr2:20737149-20737168 None:intergenic 35.0%
ACAATGCTATGTACTCTCTT+TGG + Chr2:20738187-20738206 MsG0280007800.01.T01:three_prime_UTR 35.0%
ACACACACTTCTGATCATAT+TGG + Chr2:20736696-20736715 MsG0280007800.01.T01:intron 35.0%
ACATAAAGGCTACTCTATGT+AGG + Chr2:20736322-20736341 MsG0280007800.01.T01:intron 35.0%
AGAGAATGCAGAAAAACATG+GGG - Chr2:20736805-20736824 None:intergenic 35.0%
AGTTACATACTAGTGCTTCT+TGG + Chr2:20736401-20736420 MsG0280007800.01.T01:intron 35.0%
ATGTAACTGACCCTACATAT+TGG - Chr2:20736389-20736408 None:intergenic 35.0%
CTTATTGGCGTTATTCAGTA+TGG - Chr2:20735994-20736013 None:intergenic 35.0%
GAAGAAAATCAGTACAAAGG+TGG + Chr2:20736029-20736048 MsG0280007800.01.T01:CDS 35.0%
GAGATTGACGATATGTTTCT+TGG + Chr2:20736189-20736208 MsG0280007800.01.T01:CDS 35.0%
GCAAAAGAAACAAAGGAAAG+TGG + Chr2:20737811-20737830 MsG0280007800.01.T01:intron 35.0%
GTAAGAGCTTTCTTCTCTTT+AGG - Chr2:20735591-20735610 None:intergenic 35.0%
TATTACTTGCAGCTGAAGTA+GGG + Chr2:20737071-20737090 MsG0280007800.01.T01:intron 35.0%
TCAAATTACCATGACGAAGT+TGG - Chr2:20735149-20735168 None:intergenic 35.0%
TCAAGCAAAGTTCATCAGTA+AGG + Chr2:20737446-20737465 MsG0280007800.01.T01:intron 35.0%
TCATTGAGCTAATCCAAACT+GGG - Chr2:20737472-20737491 None:intergenic 35.0%
TCCATGAGTATAACATAAGC+AGG + Chr2:20737707-20737726 MsG0280007800.01.T01:intron 35.0%
TCCTGCTTATGTTATACTCA+TGG - Chr2:20737711-20737730 None:intergenic 35.0%
TCTTATATATCTCCCCTTTG+TGG + Chr2:20737979-20737998 MsG0280007800.01.T01:three_prime_UTR 35.0%
TGGTAATTGCATCTCCAAAT+GGG + Chr2:20737898-20737917 MsG0280007800.01.T01:CDS 35.0%
TTCATTGAGCTAATCCAAAC+TGG - Chr2:20737473-20737492 None:intergenic 35.0%
TTGTTGCTATAATTGGACGA+CGG + Chr2:20735832-20735851 MsG0280007800.01.T01:intron 35.0%
TTTGCCAAATGCCGAAATAA+GGG - Chr2:20737610-20737629 None:intergenic 35.0%
TTTGCTTGATTTCACGACTT+AGG - Chr2:20737435-20737454 None:intergenic 35.0%
TTTGTAATGCAGATGTACAG+TGG + Chr2:20737878-20737897 MsG0280007800.01.T01:intron 35.0%
! ATCAATGCTAAATGGATTCG+TGG - Chr2:20735372-20735391 None:intergenic 35.0%
! GAAAACAAAGAGGTGCAAAA+AGG + Chr2:20737564-20737583 MsG0280007800.01.T01:intron 35.0%
! GGGACATTTGTTGCTATAAT+TGG + Chr2:20735825-20735844 MsG0280007800.01.T01:intron 35.0%
! TTATCCCTTATTTCGGCATT+TGG + Chr2:20737603-20737622 MsG0280007800.01.T01:intron 35.0%
! TTTTATGCTCTTTGGATAGG+TGG + Chr2:20737172-20737191 MsG0280007800.01.T01:intron 35.0%
! TTTTGCCAAATGCCGAAATA+AGG - Chr2:20737611-20737630 None:intergenic 35.0%
!! CCTTTGTTTCTTTTGCTTCT+GGG - Chr2:20737807-20737826 None:intergenic 35.0%
!! TATAACAACTAGCCTTCTCT+TGG - Chr2:20735884-20735903 None:intergenic 35.0%
!! TCCTTTGTTTCTTTTGCTTC+TGG - Chr2:20737808-20737827 None:intergenic 35.0%
!! TTAGCATTGATGTTTGTTGC+AGG + Chr2:20735381-20735400 MsG0280007800.01.T01:intron 35.0%
!!! TATGTGTTTTGTTTGGTAGG+TGG + Chr2:20735044-20735063 MsG0280007800.01.T01:intron 35.0%
AAATCAGTACAAAGGTGGTC+TGG + Chr2:20736034-20736053 MsG0280007800.01.T01:CDS 40.0%
AAGGTGGAGTCGCATTTATA+AGG - Chr2:20736544-20736563 None:intergenic 40.0%
ACATAGCATTGTCGCATAAC+AGG - Chr2:20738179-20738198 None:intergenic 40.0%
AGGTGGAGTCGCATTTATAA+GGG - Chr2:20736543-20736562 None:intergenic 40.0%
ATACGCAACATCTCAATTGC+AGG - Chr2:20737020-20737039 None:intergenic 40.0%
CAAACAACAGGAGAAAAAGC+AGG - Chr2:20735967-20735986 None:intergenic 40.0%
CAAATTGACTGCAGATGTAG+TGG + Chr2:20737935-20737954 MsG0280007800.01.T01:CDS 40.0%
CACTTGAGAATTGTCTTGGT+AGG - Chr2:20735456-20735475 None:intergenic 40.0%
CCCAGAAGCAAAAGAAACAA+AGG + Chr2:20737804-20737823 MsG0280007800.01.T01:intron 40.0%
GAATTGCATACAAGGCTTTC+TGG - Chr2:20735554-20735573 None:intergenic 40.0%
GAGAATGCAGAAAAACATGG+GGG - Chr2:20736804-20736823 None:intergenic 40.0%
GGAATCCATAATCCAAGAGA+AGG + Chr2:20735869-20735888 MsG0280007800.01.T01:intron 40.0%
GTATTACTTGCAGCTGAAGT+AGG + Chr2:20737070-20737089 MsG0280007800.01.T01:intron 40.0%
GTGGATACATACGTGAAAAG+TGG + Chr2:20735063-20735082 MsG0280007800.01.T01:CDS 40.0%
GTGGTAATTGCATCTCCAAA+TGG + Chr2:20737897-20737916 MsG0280007800.01.T01:CDS 40.0%
TACATACGTGAAAAGTGGCA+TGG + Chr2:20735068-20735087 MsG0280007800.01.T01:CDS 40.0%
TAGGGATGTTACACTTACAG+TGG + Chr2:20738027-20738046 MsG0280007800.01.T01:three_prime_UTR 40.0%
TAGTAGAAACATGCTTCAGG+TGG - Chr2:20736514-20736533 None:intergenic 40.0%
TCCAAAACGTTCAACCCATT+TGG - Chr2:20737915-20737934 None:intergenic 40.0%
TGCACACTTGAGAATTGTCT+TGG - Chr2:20735460-20735479 None:intergenic 40.0%
TGGTTGACAATCACACTCAT+TGG + Chr2:20737192-20737211 MsG0280007800.01.T01:intron 40.0%
TTACTTGTAGCTCAACTGGT+TGG + Chr2:20736155-20736174 MsG0280007800.01.T01:intron 40.0%
TTCACCAGGAATTGCATACA+AGG - Chr2:20735562-20735581 None:intergenic 40.0%
TTGCAATTGCATCAGACTTC+AGG - Chr2:20737673-20737692 None:intergenic 40.0%
TTGTCTTGGTAGGTATCCAA+AGG - Chr2:20735446-20735465 None:intergenic 40.0%
! AAAGCCTTGTATGCAATTCC+TGG + Chr2:20735555-20735574 MsG0280007800.01.T01:intron 40.0%
! AACTTACCAAGGCTTGGTAT+TGG - Chr2:20736994-20737013 None:intergenic 40.0%
! TAGGCCGACAATTTTGAACA+TGG + Chr2:20735259-20735278 MsG0280007800.01.T01:intron 40.0%
!! ACTAGCCTTCTCTTGGATTA+TGG - Chr2:20735877-20735896 None:intergenic 40.0%
!! TATGTTTCTTGGTGATGCTG+AGG + Chr2:20736200-20736219 MsG0280007800.01.T01:CDS 40.0%
!!! TCCAAATGGGTTGAACGTTT+TGG + Chr2:20737911-20737930 MsG0280007800.01.T01:CDS 40.0%
AAGTGCAAGTGAAGCAGCAA+AGG + Chr2:20735412-20735431 MsG0280007800.01.T01:CDS 45.0%
AAGTGGCATGGTTGTAGGAT+TGG + Chr2:20735080-20735099 MsG0280007800.01.T01:CDS 45.0%
ACATCTCCAATACCAAGCCT+TGG + Chr2:20736985-20737004 MsG0280007800.01.T01:CDS 45.0%
ACGACGGAAATTGCAAAGTG+AGG + Chr2:20735848-20735867 MsG0280007800.01.T01:intron 45.0%
AGTGGCATGGTTGTAGGATT+GGG + Chr2:20735081-20735100 MsG0280007800.01.T01:CDS 45.0%
ATGTCCCTTCTCTACACCAT+CGG - Chr2:20735812-20735831 None:intergenic 45.0%
ATTGCAGGCAGAACTTACCA+AGG - Chr2:20737005-20737024 None:intergenic 45.0%
GGGGACATTAGAAAACCTCT+TGG - Chr2:20736785-20736804 None:intergenic 45.0%
GGTATGGCCATTCAGCATTT+AGG + Chr2:20735120-20735139 MsG0280007800.01.T01:CDS 45.0%
GTGAAAAGTGGCATGGTTGT+AGG + Chr2:20735075-20735094 MsG0280007800.01.T01:CDS 45.0%
TGTGGAGAAGACCAGCTATT+GGG + Chr2:20736890-20736909 MsG0280007800.01.T01:CDS 45.0%
TTCATCAGTAAGGCCCAGTT+TGG + Chr2:20737456-20737475 MsG0280007800.01.T01:intron 45.0%
TTGGCGACCTAAATGCTGAA+TGG - Chr2:20735130-20735149 None:intergenic 45.0%
TTTCCACTAGTCACAGGAGA+AGG + Chr2:20736937-20736956 MsG0280007800.01.T01:CDS 45.0%
! CAGTATGGACTGCAAACAAC+AGG - Chr2:20735979-20735998 None:intergenic 45.0%
! GGGTTTTCGATATGACACCA+TGG - Chr2:20737129-20737148 None:intergenic 45.0%
!! ATTGATGGTGTTGCAGACCA+TGG + Chr2:20737109-20737128 MsG0280007800.01.T01:CDS 45.0%
!! GTTGCATTTGATGATGCCGA+TGG + Chr2:20735793-20735812 MsG0280007800.01.T01:intron 45.0%
AAAGGAGGAAGAGCTCACGT+GGG - Chr2:20735189-20735208 None:intergenic 50.0%
AGCAAAGGCTGGGATTCCTT+TGG + Chr2:20735427-20735446 MsG0280007800.01.T01:CDS 50.0%
AGGCAGAACTTACCAAGGCT+TGG - Chr2:20737000-20737019 None:intergenic 50.0%
AGTGGAAAGTCACCACCTAG+TGG - Chr2:20736925-20736944 None:intergenic 50.0%
ATGGTTGTAGGATTGGGGTC+TGG + Chr2:20735087-20735106 MsG0280007800.01.T01:CDS 50.0%
CAAGTGAAGCAGCAAAGGCT+GGG + Chr2:20735417-20735436 MsG0280007800.01.T01:CDS 50.0%
CAGTACAAAGGTGGTCTGGA+AGG + Chr2:20736038-20736057 MsG0280007800.01.T01:CDS 50.0%
GATGCCGATGGTGTAGAGAA+GGG + Chr2:20735805-20735824 MsG0280007800.01.T01:intron 50.0%
GGTGACTTTCCACTAGTCAC+AGG + Chr2:20736931-20736950 MsG0280007800.01.T01:CDS 50.0%
GTCTGGTCATGCTTCTGGTA+TGG + Chr2:20735104-20735123 MsG0280007800.01.T01:CDS 50.0%
GTGGCATGGTTGTAGGATTG+GGG + Chr2:20735082-20735101 MsG0280007800.01.T01:CDS 50.0%
GTGTGGAGAAGACCAGCTAT+TGG + Chr2:20736889-20736908 MsG0280007800.01.T01:CDS 50.0%
TGATGCCGATGGTGTAGAGA+AGG + Chr2:20735804-20735823 MsG0280007800.01.T01:intron 50.0%
TGTCCTTCTCCTGTGACTAG+TGG - Chr2:20736943-20736962 None:intergenic 50.0%
TTAGGTCGCCAACTTCGTCA+TGG + Chr2:20735138-20735157 MsG0280007800.01.T01:CDS 50.0%
!! GACTGCAGATGTAGTGGGTT+AGG + Chr2:20737941-20737960 MsG0280007800.01.T01:CDS 50.0%
AGACCAGCTATTGGGCAAGC+AGG + Chr2:20736898-20736917 MsG0280007800.01.T01:CDS 55.0%
AGTTGCGCGTGAGTGCATGT+AGG - Chr2:20738087-20738106 None:intergenic 55.0%
ATTGGGCAAGCAGGTCCACT+AGG + Chr2:20736907-20736926 MsG0280007800.01.T01:CDS 55.0%
GAAAGGAGGAAGAGCTCACG+TGG - Chr2:20735190-20735209 None:intergenic 55.0%
GCAAGTGAAGCAGCAAAGGC+TGG + Chr2:20735416-20735435 MsG0280007800.01.T01:CDS 55.0%
TTGGGGTCTGGTCATGCTTC+TGG + Chr2:20735099-20735118 MsG0280007800.01.T01:CDS 55.0%
GGACCTGCTTGCCCAATAGC+TGG - Chr2:20736904-20736923 None:intergenic 60.0%
GGGCAAGCAGGTCCACTAGG+TGG + Chr2:20736910-20736929 MsG0280007800.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 20734940 20738256 20734940 ID=MsG0280007800.01;Name=MsG0280007800.01
Chr2 mRNA 20734940 20738256 20734940 ID=MsG0280007800.01.T01;Parent=MsG0280007800.01;Name=MsG0280007800.01.T01;_AED=0.43;_eAED=0.44;_QI=0|0.71|0.87|1|0.42|0.5|8|294|210
Chr2 exon 20734940 20734963 20734940 ID=MsG0280007800.01.T01:exon:4853;Parent=MsG0280007800.01.T01
Chr2 exon 20735063 20735190 20735063 ID=MsG0280007800.01.T01:exon:4854;Parent=MsG0280007800.01.T01
Chr2 exon 20735403 20735472 20735403 ID=MsG0280007800.01.T01:exon:4855;Parent=MsG0280007800.01.T01
Chr2 exon 20735990 20736085 20735990 ID=MsG0280007800.01.T01:exon:4856;Parent=MsG0280007800.01.T01
Chr2 exon 20736165 20736221 20736165 ID=MsG0280007800.01.T01:exon:4857;Parent=MsG0280007800.01.T01
Chr2 exon 20736889 20737006 20736889 ID=MsG0280007800.01.T01:exon:4858;Parent=MsG0280007800.01.T01
Chr2 exon 20737083 20737149 20737083 ID=MsG0280007800.01.T01:exon:4859;Parent=MsG0280007800.01.T01
Chr2 exon 20737890 20738256 20737890 ID=MsG0280007800.01.T01:exon:4860;Parent=MsG0280007800.01.T01
Chr2 CDS 20734940 20734963 20734940 ID=MsG0280007800.01.T01:cds;Parent=MsG0280007800.01.T01
Chr2 CDS 20735063 20735190 20735063 ID=MsG0280007800.01.T01:cds;Parent=MsG0280007800.01.T01
Chr2 CDS 20735403 20735472 20735403 ID=MsG0280007800.01.T01:cds;Parent=MsG0280007800.01.T01
Chr2 CDS 20735990 20736085 20735990 ID=MsG0280007800.01.T01:cds;Parent=MsG0280007800.01.T01
Chr2 CDS 20736165 20736221 20736165 ID=MsG0280007800.01.T01:cds;Parent=MsG0280007800.01.T01
Chr2 CDS 20736889 20737006 20736889 ID=MsG0280007800.01.T01:cds;Parent=MsG0280007800.01.T01
Chr2 CDS 20737083 20737149 20737083 ID=MsG0280007800.01.T01:cds;Parent=MsG0280007800.01.T01
Chr2 CDS 20737890 20737962 20737890 ID=MsG0280007800.01.T01:cds;Parent=MsG0280007800.01.T01
Chr2 three_prime_UTR 20737963 20738256 20737963 ID=MsG0280007800.01.T01:three_prime_utr;Parent=MsG0280007800.01.T01
Gene Sequence

>MsG0280007800.01.T01

ATGGGTGACAAAATAATGAAAACTGTGGATACATACGTGAAAAGTGGCATGGTTGTAGGATTGGGGTCTGGTCATGCTTCTGGTATGGCCATTCAGCATTTAGGTCGCCAACTTCGTCATGGTAATTTGAAAGACATAGTAGGGATTCCCACGTCTGTTGCAAGTGCAAGTGAAGCAGCAAAGGCTGGGATTCCTTTGGATACCTACCAAGACAATTCTCAATCCATACTGAATAACGCCAATAAGCTAGTGTTCATTATTGAAGAAAATCAGTACAAAGGTGGTCTGGAAGGTTCTATTCCAGTTTTAATTCAGTCTCTCAACTGGTTGGCAACTGCTGAAGAGATTGACGATATGTTTCTTGGTGATGCTGAGGTGTGGAGAAGACCAGCTATTGGGCAAGCAGGTCCACTAGGTGGTGACTTTCCACTAGTCACAGGAGAAGGACATAATGTTCTTGATGTTATCTTCACATCTCCAATACCAAGCCTTGCTGAAGTAGGGAAAATCCTTGATAAAATTGATGGTGTTGCAGACCATGGTGTCATATCGAAAACCCCATGTACAGTGGTAATTGCATCTCCAAATGGGTTGAACGTTTTGGACAAATTGACTGCAGATGTAGTGGGTTAG

Protein sequence

>MsG0280007800.01.T01

MGDKIMKTVDTYVKSGMVVGLGSGHASGMAIQHLGRQLRHGNLKDIVGIPTSVASASEAAKAGIPLDTYQDNSQSILNNANKLVFIIEENQYKGGLEGSIPVLIQSLNWLATAEEIDDMFLGDAEVWRRPAIGQAGPLGGDFPLVTGEGHNVLDVIFTSPIPSLAEVGKILDKIDGVADHGVISKTPCTVVIASPNGLNVLDKLTADVVG*