AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017966.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017966.01.T01 MTR_3g115970 73.246 228 33 3 43 261 20 228 2.53e-108 312
MsG0380017966.01.T01 MTR_1g061850 41.912 136 55 3 123 258 132 243 6.12e-23 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017966.01.T01 AT1G20810 56.275 247 76 6 24 259 1 226 1.68e-73 224
MsG0380017966.01.T01 AT1G20810 63.218 174 43 1 99 251 45 218 1.96e-63 198
MsG0380017966.01.T01 AT3G10060 44.118 136 52 3 123 258 105 216 3.69e-24 97.4

Find 73 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACGCTTCCTTTCCTTTC+CGG 0.156985 3:-102708408 None:intergenic
GTGATTGTTCCTCCTGAAAA+AGG 0.202905 3:+102708640 MsG0380017966.01.T01:CDS
TCACGCTTCCTTTCCTTTCC+GGG 0.259693 3:-102708407 None:intergenic
TGCACTTTGATTGTTTATAT+CGG 0.284599 3:+102707939 MsG0380017966.01.T01:CDS
CTTCTTCTTGCGTCTTTCTC+TGG 0.307570 3:-102707586 None:intergenic
TACATGGCTTGTGGAGGTTT+TGG 0.308187 3:-102708473 None:intergenic
AATGAAATGGATAGAATATA+TGG 0.315993 3:+102707325 MsG0380017966.01.T01:CDS
AAAGGTCCAATAGCTGAAAA+AGG 0.351722 3:+102707813 MsG0380017966.01.T01:CDS
GCACTTTGATTGTTTATATC+GGG 0.374423 3:+102707940 MsG0380017966.01.T01:CDS
AAAGGGAATGAATGAGATTC+CGG 0.389171 3:+102708672 MsG0380017966.01.T01:CDS
AGCCATAGCCCAAGCCTCAT+AGG 0.392405 3:-102709140 None:intergenic
TAACAACCAAGTTAACGAAT+TGG 0.394998 3:-102707413 None:intergenic
GAGAAATCGAAGAAATGAAA+TGG 0.417294 3:+102707312 MsG0380017966.01.T01:CDS
GCTCCCACCTTGAATTCATA+TGG 0.419789 3:-102708380 None:intergenic
TGTGCTGAGAATAGACCATT+TGG 0.426502 3:-102708443 None:intergenic
TCCTTCAACTATTGTGTACA+TGG 0.428423 3:-102708489 None:intergenic
CGTCTTTCTCTGGCCTCCGC+TGG 0.429487 3:-102707576 None:intergenic
AGTTTGTACCCTATGAGGCT+TGG 0.432716 3:+102709131 MsG0380017966.01.T01:three_prime_UTR
GTTTGTACCCTATGAGGCTT+GGG 0.434434 3:+102709132 MsG0380017966.01.T01:three_prime_UTR
ATTGGAACTGCAAGTGTAAA+GGG 0.437508 3:-102707395 None:intergenic
TTGAAAGCCATATGAATTCA+AGG 0.444661 3:+102708373 MsG0380017966.01.T01:intron
CGAGAATCTAAACTCCTAGC+TGG 0.452386 3:+102707983 MsG0380017966.01.T01:CDS
CTTGAGACGACGGGCATTGA+CGG 0.457214 3:+102707471 MsG0380017966.01.T01:CDS
TCTCTGGCCTCCGCTGGTGG+TGG 0.460486 3:-102707570 None:intergenic
TTCAGAGTTTGTACCCTATG+AGG 0.464666 3:+102709126 MsG0380017966.01.T01:three_prime_UTR
GGAAGTGACATAATCATCAA+TGG 0.467741 3:-102707616 None:intergenic
ACCCTATGAGGCTTGGGCTA+TGG 0.470639 3:+102709138 MsG0380017966.01.T01:three_prime_UTR
TAACTTGGTTGTTACAGAAA+CGG 0.475122 3:+102707422 MsG0380017966.01.T01:CDS
GCAGTTCCAATTCGTTAACT+TGG 0.483413 3:+102707407 MsG0380017966.01.T01:CDS
CTTTCTCTGGCCTCCGCTGG+TGG 0.484138 3:-102707573 None:intergenic
GTGATGTTTGATTCAGCTGA+TGG 0.484663 3:+102707762 MsG0380017966.01.T01:CDS
CTATTACACGATTTCCAGCT+AGG 0.491372 3:-102707997 None:intergenic
AATTGGAACTGCAAGTGTAA+AGG 0.497189 3:-102707396 None:intergenic
CCTCCGCTGGTGGTGGAGAG+AGG 0.497265 3:-102707563 None:intergenic
AAACGGAACGTTGATCATTA+CGG 0.500002 3:+102707439 MsG0380017966.01.T01:CDS
TTTAGTTCAAATGTAGCTCC+AGG 0.505276 3:-102709026 None:intergenic
GCCATGTACACAATAGTTGA+AGG 0.511563 3:+102708488 MsG0380017966.01.T01:CDS
CACTTTGATTGTTTATATCG+GGG 0.518894 3:+102707941 MsG0380017966.01.T01:CDS
CAAATTGCAGCCACGAGAGA+AGG 0.519056 3:-102709296 None:intergenic
GAAGTGACATAATCATCAAT+GGG 0.521859 3:-102707615 None:intergenic
TTCAAGGTGGGAGCTCCGCC+CGG 0.533829 3:+102708389 MsG0380017966.01.T01:CDS
GTGCTGAGAATAGACCATTT+GGG 0.537998 3:-102708442 None:intergenic
TTCTCAATCGAGAAGGTCCA+CGG 0.543491 3:+102707503 MsG0380017966.01.T01:CDS
AGGTTTCAGCTTGAGACGAC+GGG 0.544817 3:+102707462 MsG0380017966.01.T01:CDS
GAATTTGTCGACAACCCAAA+TGG 0.547525 3:+102708428 MsG0380017966.01.T01:CDS
CCTCTCTCCACCACCAGCGG+AGG 0.550932 3:+102707563 MsG0380017966.01.T01:CDS
CACTTATCTTCCTTCTCTCG+TGG 0.565134 3:+102709286 MsG0380017966.01.T01:three_prime_UTR
GCCATAGCCCAAGCCTCATA+GGG 0.565279 3:-102709139 None:intergenic
AAATATTGAACTTCTGCAAG+TGG 0.566237 3:+102709046 MsG0380017966.01.T01:CDS
TGGAAATCGTGTAATAGCCC+AGG 0.566555 3:+102708003 MsG0380017966.01.T01:CDS
GAGAGGAAAACGAAGGTGAA+AGG 0.571097 3:-102707546 None:intergenic
GGTGGGAGCTCCGCCCGGAA+AGG 0.571793 3:+102708394 MsG0380017966.01.T01:CDS
ACGACGGGCATTGACGGTGT+TGG 0.573637 3:+102707477 MsG0380017966.01.T01:CDS
GTTGAAGGAATGCGAGTGGG+TGG 0.575403 3:+102708503 MsG0380017966.01.T01:CDS
TTTCCTCTCTCCACCACCAG+CGG 0.582844 3:+102707560 MsG0380017966.01.T01:CDS
ACTATTGTGTACATGGCTTG+TGG 0.588221 3:-102708482 None:intergenic
AATATATGGTAAAATAGTAG+AGG 0.614260 3:+102707339 MsG0380017966.01.T01:CDS
GAGCTCCGCCCGGAAAGGAA+AGG 0.619888 3:+102708399 MsG0380017966.01.T01:CDS
TTGGACTTTCTCAATCGAGA+AGG 0.620502 3:+102707496 MsG0380017966.01.T01:CDS
CGCTTCCTTTCCTTTCCGGG+CGG 0.626353 3:-102708404 None:intergenic
AGGAATGCGAGTGGGTGGAA+AGG 0.636293 3:+102708508 MsG0380017966.01.T01:CDS
GAGGTTTCAGCTTGAGACGA+CGG 0.646422 3:+102707461 MsG0380017966.01.T01:CDS
AAGCCATATGAATTCAAGGT+GGG 0.651080 3:+102708377 MsG0380017966.01.T01:intron
AATAGTTGAAGGAATGCGAG+TGG 0.658026 3:+102708499 MsG0380017966.01.T01:CDS
GAAAACGAAGGTGAAAGGCA+AGG 0.661753 3:-102707541 None:intergenic
ATAGTTGAAGGAATGCGAGT+GGG 0.666151 3:+102708500 MsG0380017966.01.T01:CDS
GGATGAAATAAGAATCGCCG+TGG 0.669128 3:-102707520 None:intergenic
ATTGTGTACATGGCTTGTGG+AGG 0.674657 3:-102708479 None:intergenic
CGGAACGTTGATCATTACGG+AGG 0.678320 3:+102707442 MsG0380017966.01.T01:CDS
TGGTGGAGAGAGGAAAACGA+AGG 0.707066 3:-102707553 None:intergenic
GGTAAAATAGTAGAGGTGCG+AGG 0.715003 3:+102707346 MsG0380017966.01.T01:CDS
GATCTCAATATATATGTACG+TGG 0.729740 3:+102709324 MsG0380017966.01.T01:three_prime_UTR
AAAGCCATATGAATTCAAGG+TGG 0.730629 3:+102708376 MsG0380017966.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTAAAGTATATAAGAAAT+AGG - Chr3:102708269-102708288 None:intergenic 15.0%
!!! AAAATATTATGATTTTCTTG+AGG + Chr3:102707788-102707807 MsG0380017966.01.T01:CDS 15.0%
!!! AAATATTATGATTTTCTTGA+GGG + Chr3:102707789-102707808 MsG0380017966.01.T01:CDS 15.0%
!!! TATTGATTAGATAAAAGTTA+TGG + Chr3:102708912-102708931 MsG0380017966.01.T01:intron 15.0%
!! AAACTAAATAGGCAAATTAT+TGG - Chr3:102708031-102708050 None:intergenic 20.0%
!! AACATAGTTTAACAGTAAAT+GGG - Chr3:102707667-102707686 None:intergenic 20.0%
!! AATATATGGTAAAATAGTAG+AGG + Chr3:102707339-102707358 MsG0380017966.01.T01:CDS 20.0%
!! AATGAAATGGATAGAATATA+TGG + Chr3:102707325-102707344 MsG0380017966.01.T01:CDS 20.0%
!! ACATAACTCAAAATGATATT+GGG - Chr3:102708237-102708256 None:intergenic 20.0%
!! ATGTACAATTAAAATAGTAG+AGG - Chr3:102708876-102708895 None:intergenic 20.0%
!!! CTTATTTTTCTCTTAAATGA+TGG + Chr3:102708605-102708624 MsG0380017966.01.T01:intron 20.0%
! AAAAAGAGGAAAACATCAAT+GGG - Chr3:102709174-102709193 None:intergenic 25.0%
! AAACTCAAAATGAGACTATT+TGG - Chr3:102708126-102708145 None:intergenic 25.0%
! ACAAAGAACAACAGAATTTA+AGG - Chr3:102708752-102708771 None:intergenic 25.0%
! ATCTATTGAAACATACACTT+AGG + Chr3:102708797-102708816 MsG0380017966.01.T01:intron 25.0%
! CATAACTCAAAATGATATTG+GGG - Chr3:102708236-102708255 None:intergenic 25.0%
! GAACATAGTTTAACAGTAAA+TGG - Chr3:102707668-102707687 None:intergenic 25.0%
! GACATAACTCAAAATGATAT+TGG - Chr3:102708238-102708257 None:intergenic 25.0%
! GTATATAAGAAATAGGACTT+TGG - Chr3:102708262-102708281 None:intergenic 25.0%
! TGCACTTTGATTGTTTATAT+CGG + Chr3:102707939-102707958 MsG0380017966.01.T01:CDS 25.0%
!! AATCATTTTGTGAAAGGAAA+AGG - Chr3:102709220-102709239 None:intergenic 25.0%
!!! AAGGAAGATAAGTGTTTTTT+TGG - Chr3:102709280-102709299 None:intergenic 25.0%
!!! GGATCACTTTTTGTATATTA+TGG + Chr3:102709345-102709364 MsG0380017966.01.T01:three_prime_UTR 25.0%
!!! TTTCAATAGATTTGCTAGAT+GGG - Chr3:102708788-102708807 None:intergenic 25.0%
!!! TTTTTGTAGTCTTTTGACTA+GGG + Chr3:102709189-102709208 MsG0380017966.01.T01:three_prime_UTR 25.0%
AAATATTGAACTTCTGCAAG+TGG + Chr3:102709046-102709065 MsG0380017966.01.T01:CDS 30.0%
AGTCAAAAGACTACAAAAAG+AGG - Chr3:102709188-102709207 None:intergenic 30.0%
CAAAAAGAGGAAAACATCAA+TGG - Chr3:102709175-102709194 None:intergenic 30.0%
CACTTTGATTGTTTATATCG+GGG + Chr3:102707941-102707960 MsG0380017966.01.T01:CDS 30.0%
GAAGTGACATAATCATCAAT+GGG - Chr3:102707618-102707637 None:intergenic 30.0%
GAGAAATCGAAGAAATGAAA+TGG + Chr3:102707312-102707331 MsG0380017966.01.T01:CDS 30.0%
GATCTCAATATATATGTACG+TGG + Chr3:102709324-102709343 MsG0380017966.01.T01:three_prime_UTR 30.0%
GCACTTTGATTGTTTATATC+GGG + Chr3:102707940-102707959 MsG0380017966.01.T01:CDS 30.0%
TAACAACCAAGTTAACGAAT+TGG - Chr3:102707416-102707435 None:intergenic 30.0%
TAACTTGGTTGTTACAGAAA+CGG + Chr3:102707422-102707441 MsG0380017966.01.T01:CDS 30.0%
TCAATGCTAGTTGTAACTAT+CGG + Chr3:102708089-102708108 MsG0380017966.01.T01:intron 30.0%
TCATTTCTTCGATTTCTCAT+AGG - Chr3:102707310-102707329 None:intergenic 30.0%
TTGAAAGCCATATGAATTCA+AGG + Chr3:102708373-102708392 MsG0380017966.01.T01:intron 30.0%
! GAAAAAGGGTATGGAAAAAA+GGG + Chr3:102708655-102708674 MsG0380017966.01.T01:CDS 30.0%
! TATGATTTTCTTGAGGGAAA+AGG + Chr3:102707795-102707814 MsG0380017966.01.T01:CDS 30.0%
! TGAAAAAGGGTATGGAAAAA+AGG + Chr3:102708654-102708673 MsG0380017966.01.T01:CDS 30.0%
! TTGTCTAGAAGAAAGCATAT+TGG + Chr3:102708294-102708313 MsG0380017966.01.T01:intron 30.0%
!! CTTTTTGTAGTCTTTTGACT+AGG + Chr3:102709188-102709207 MsG0380017966.01.T01:three_prime_UTR 30.0%
!! GTTTCAATAGATTTGCTAGA+TGG - Chr3:102708789-102708808 None:intergenic 30.0%
!! TTCAATAGATTTGCTAGATG+GGG - Chr3:102708787-102708806 None:intergenic 30.0%
!!! GTGTTTTTTTGGTTACAAGA+AGG - Chr3:102709269-102709288 None:intergenic 30.0%
!!! TTTTTTCCATACCCTTTTTC+AGG - Chr3:102708655-102708674 None:intergenic 30.0%
AAACGGAACGTTGATCATTA+CGG + Chr3:102707439-102707458 MsG0380017966.01.T01:CDS 35.0%
AAAGCCATATGAATTCAAGG+TGG + Chr3:102708376-102708395 MsG0380017966.01.T01:intron 35.0%
AAAGGGAATGAATGAGATTC+CGG + Chr3:102708672-102708691 MsG0380017966.01.T01:CDS 35.0%
AAAGGTCCAATAGCTGAAAA+AGG + Chr3:102707813-102707832 MsG0380017966.01.T01:CDS 35.0%
AAGCCATATGAATTCAAGGT+GGG + Chr3:102708377-102708396 MsG0380017966.01.T01:intron 35.0%
AATTGGAACTGCAAGTGTAA+AGG - Chr3:102707399-102707418 None:intergenic 35.0%
ACTCAAAATGATATTGGGGT+CGG - Chr3:102708232-102708251 None:intergenic 35.0%
ATAGGCAAATTATTGGAACC+TGG - Chr3:102708024-102708043 None:intergenic 35.0%
ATTGGAACTGCAAGTGTAAA+GGG - Chr3:102707398-102707417 None:intergenic 35.0%
CACTAGAACAAAATCAAGAG+GGG - Chr3:102708545-102708564 None:intergenic 35.0%
GACACACGGAAAAACTAAAT+AGG - Chr3:102708042-102708061 None:intergenic 35.0%
GCACTAGAACAAAATCAAGA+GGG - Chr3:102708546-102708565 None:intergenic 35.0%
GGAAGTGACATAATCATCAA+TGG - Chr3:102707619-102707638 None:intergenic 35.0%
TAGGCAAATTATTGGAACCT+GGG - Chr3:102708023-102708042 None:intergenic 35.0%
TCCTTCAACTATTGTGTACA+TGG - Chr3:102708492-102708511 None:intergenic 35.0%
TGAAAAAGGATCAACTGTTC+AGG + Chr3:102707827-102707846 MsG0380017966.01.T01:CDS 35.0%
TGACAAGAACAGATCTTTAC+CGG - Chr3:102708694-102708713 None:intergenic 35.0%
TGATTGTTCCTCCTGAAAAA+GGG + Chr3:102708641-102708660 MsG0380017966.01.T01:CDS 35.0%
! CAGCACAATCATTTTGTGAA+AGG - Chr3:102709226-102709245 None:intergenic 35.0%
! TTTAGTTCAAATGTAGCTCC+AGG - Chr3:102709029-102709048 None:intergenic 35.0%
!!! GTTGATCCTTTTTCAGCTAT+TGG - Chr3:102707822-102707841 None:intergenic 35.0%
AACTTTCATGACAACGCCTA+AGG - Chr3:102708830-102708849 None:intergenic 40.0%
AATAGTTGAAGGAATGCGAG+TGG + Chr3:102708499-102708518 MsG0380017966.01.T01:CDS 40.0%
ACTATTGTGTACATGGCTTG+TGG - Chr3:102708485-102708504 None:intergenic 40.0%
ATAGTTGAAGGAATGCGAGT+GGG + Chr3:102708500-102708519 MsG0380017966.01.T01:CDS 40.0%
CGCACTAGAACAAAATCAAG+AGG - Chr3:102708547-102708566 None:intergenic 40.0%
CTATTACACGATTTCCAGCT+AGG - Chr3:102708000-102708019 None:intergenic 40.0%
CTCAAAATGATATTGGGGTC+GGG - Chr3:102708231-102708250 None:intergenic 40.0%
GAATTTGTCGACAACCCAAA+TGG + Chr3:102708428-102708447 MsG0380017966.01.T01:CDS 40.0%
GCAGTTCCAATTCGTTAACT+TGG + Chr3:102707407-102707426 MsG0380017966.01.T01:CDS 40.0%
GCATTCATCAGCATTCAACA+CGG - Chr3:102708340-102708359 None:intergenic 40.0%
GCCATGTACACAATAGTTGA+AGG + Chr3:102708488-102708507 MsG0380017966.01.T01:CDS 40.0%
GTAAATGGGAATGTTGAGTG+AGG - Chr3:102707653-102707672 None:intergenic 40.0%
GTGATGTTTGATTCAGCTGA+TGG + Chr3:102707762-102707781 MsG0380017966.01.T01:CDS 40.0%
GTGATTGTTCCTCCTGAAAA+AGG + Chr3:102708640-102708659 MsG0380017966.01.T01:CDS 40.0%
GTGCTGAGAATAGACCATTT+GGG - Chr3:102708445-102708464 None:intergenic 40.0%
GTTGAGTGAGGAAGGAATTA+CGG - Chr3:102707641-102707660 None:intergenic 40.0%
GTTTGAGCTAAGAGTTGTGA+AGG - Chr3:102708197-102708216 None:intergenic 40.0%
TGTGCTGAGAATAGACCATT+TGG - Chr3:102708446-102708465 None:intergenic 40.0%
TTCAGAGTTTGTACCCTATG+AGG + Chr3:102709126-102709145 MsG0380017966.01.T01:three_prime_UTR 40.0%
TTGAGTGAGGAAGGAATTAC+GGG - Chr3:102707640-102707659 None:intergenic 40.0%
TTGGACTTTCTCAATCGAGA+AGG + Chr3:102707496-102707515 MsG0380017966.01.T01:CDS 40.0%
TTGTTTATGTTGTTGCAGCC+TGG + Chr3:102709008-102709027 MsG0380017966.01.T01:intron 40.0%
! GGCTTTCAAGAGTATAAAGC+AGG - Chr3:102708362-102708381 None:intergenic 40.0%
!!! TTTCCATACCCTTTTTCAGG+AGG - Chr3:102708652-102708671 None:intergenic 40.0%
ACACTTAGGACAAGTGCCTT+AGG + Chr3:102708811-102708830 MsG0380017966.01.T01:intron 45.0%
AGTGTTTGTGTGTGTGTGTG+AGG + Chr3:102708062-102708081 MsG0380017966.01.T01:intron 45.0%
AGTTTGTACCCTATGAGGCT+TGG + Chr3:102709131-102709150 MsG0380017966.01.T01:three_prime_UTR 45.0%
ATGGGAATGTTGAGTGAGGA+AGG - Chr3:102707649-102707668 None:intergenic 45.0%
ATTTCACTCTTGCTGCTGAC+AGG + Chr3:102707916-102707935 MsG0380017966.01.T01:intron 45.0%
CACACACAAACACTGACACA+CGG - Chr3:102708056-102708075 None:intergenic 45.0%
CACTTATCTTCCTTCTCTCG+TGG + Chr3:102709286-102709305 MsG0380017966.01.T01:three_prime_UTR 45.0%
CGAGAATCTAAACTCCTAGC+TGG + Chr3:102707983-102708002 MsG0380017966.01.T01:CDS 45.0%
CTTCTTCTTGCGTCTTTCTC+TGG - Chr3:102707589-102707608 None:intergenic 45.0%
GAAAACGAAGGTGAAAGGCA+AGG - Chr3:102707544-102707563 None:intergenic 45.0%
GAGAGGAAAACGAAGGTGAA+AGG - Chr3:102707549-102707568 None:intergenic 45.0%
GCTCCCACCTTGAATTCATA+TGG - Chr3:102708383-102708402 None:intergenic 45.0%
GGATGAAATAAGAATCGCCG+TGG - Chr3:102707523-102707542 None:intergenic 45.0%
GTGTTTGTGTGTGTGTGTGA+GGG + Chr3:102708063-102708082 MsG0380017966.01.T01:intron 45.0%
GTTCAACAAGCGCATGTTGT+AGG - Chr3:102708987-102709006 None:intergenic 45.0%
GTTCCTCCTGAAAAAGGGTA+TGG + Chr3:102708646-102708665 MsG0380017966.01.T01:CDS 45.0%
GTTTGTACCCTATGAGGCTT+GGG + Chr3:102709132-102709151 MsG0380017966.01.T01:three_prime_UTR 45.0%
TAGAGGTGAGCATAACAGAG+TGG - Chr3:102708859-102708878 None:intergenic 45.0%
TGGAAATCGTGTAATAGCCC+AGG + Chr3:102708003-102708022 MsG0380017966.01.T01:CDS 45.0%
TTCACGCTTCCTTTCCTTTC+CGG - Chr3:102708411-102708430 None:intergenic 45.0%
TTCTCAATCGAGAAGGTCCA+CGG + Chr3:102707503-102707522 MsG0380017966.01.T01:CDS 45.0%
! ATTGTGTACATGGCTTGTGG+AGG - Chr3:102708482-102708501 None:intergenic 45.0%
! ATTTGCTAGATGGGGACATC+AGG - Chr3:102708779-102708798 None:intergenic 45.0%
! GGTAAAATAGTAGAGGTGCG+AGG + Chr3:102707346-102707365 MsG0380017966.01.T01:CDS 45.0%
!! TACATGGCTTGTGGAGGTTT+TGG - Chr3:102708476-102708495 None:intergenic 45.0%
AGGTTTCAGCTTGAGACGAC+GGG + Chr3:102707462-102707481 MsG0380017966.01.T01:CDS 50.0%
CAAATTGCAGCCACGAGAGA+AGG - Chr3:102709299-102709318 None:intergenic 50.0%
CGGAACGTTGATCATTACGG+AGG + Chr3:102707442-102707461 MsG0380017966.01.T01:CDS 50.0%
GAGGTTTCAGCTTGAGACGA+CGG + Chr3:102707461-102707480 MsG0380017966.01.T01:CDS 50.0%
TCACGCTTCCTTTCCTTTCC+GGG - Chr3:102708410-102708429 None:intergenic 50.0%
TGGTGGAGAGAGGAAAACGA+AGG - Chr3:102707556-102707575 None:intergenic 50.0%
ACCCTATGAGGCTTGGGCTA+TGG + Chr3:102709138-102709157 MsG0380017966.01.T01:three_prime_UTR 55.0%
AGCCATAGCCCAAGCCTCAT+AGG - Chr3:102709143-102709162 None:intergenic 55.0%
AGGAATGCGAGTGGGTGGAA+AGG + Chr3:102708508-102708527 MsG0380017966.01.T01:CDS 55.0%
GCCATAGCCCAAGCCTCATA+GGG - Chr3:102709142-102709161 None:intergenic 55.0%
GTTGAAGGAATGCGAGTGGG+TGG + Chr3:102708503-102708522 MsG0380017966.01.T01:CDS 55.0%
TTTCCTCTCTCCACCACCAG+CGG + Chr3:102707560-102707579 MsG0380017966.01.T01:CDS 55.0%
!! CTTGAGACGACGGGCATTGA+CGG + Chr3:102707471-102707490 MsG0380017966.01.T01:CDS 55.0%
CGCTTCCTTTCCTTTCCGGG+CGG - Chr3:102708407-102708426 None:intergenic 60.0%
TTGGGGTCGGGTAGCTCAAC+TGG - Chr3:102708219-102708238 None:intergenic 60.0%
!! ACGACGGGCATTGACGGTGT+TGG + Chr3:102707477-102707496 MsG0380017966.01.T01:CDS 60.0%
CGTCTTTCTCTGGCCTCCGC+TGG - Chr3:102707579-102707598 None:intergenic 65.0%
CTTTCTCTGGCCTCCGCTGG+TGG - Chr3:102707576-102707595 None:intergenic 65.0%
GAGCTCCGCCCGGAAAGGAA+AGG + Chr3:102708399-102708418 MsG0380017966.01.T01:CDS 65.0%
TTCAAGGTGGGAGCTCCGCC+CGG + Chr3:102708389-102708408 MsG0380017966.01.T01:CDS 65.0%
CCTCTCTCCACCACCAGCGG+AGG + Chr3:102707563-102707582 MsG0380017966.01.T01:CDS 70.0%
TCTCTGGCCTCCGCTGGTGG+TGG - Chr3:102707573-102707592 None:intergenic 70.0%
!! CCTCCGCTGGTGGTGGAGAG+AGG - Chr3:102707566-102707585 None:intergenic 70.0%
GGTGGGAGCTCCGCCCGGAA+AGG + Chr3:102708394-102708413 MsG0380017966.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 102707310 102709409 102707310 ID=MsG0380017966.01;Name=MsG0380017966.01
Chr3 mRNA 102707310 102709409 102707310 ID=MsG0380017966.01.T01;Parent=MsG0380017966.01;Name=MsG0380017966.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0.8|0.66|1|0.6|0.66|6|330|261
Chr3 exon 102707310 102707639 102707310 ID=MsG0380017966.01.T01:exon:13411;Parent=MsG0380017966.01.T01
Chr3 exon 102707744 102707848 102707744 ID=MsG0380017966.01.T01:exon:13412;Parent=MsG0380017966.01.T01
Chr3 exon 102707938 102708024 102707938 ID=MsG0380017966.01.T01:exon:13413;Parent=MsG0380017966.01.T01
Chr3 exon 102708380 102708529 102708380 ID=MsG0380017966.01.T01:exon:13414;Parent=MsG0380017966.01.T01
Chr3 exon 102708634 102708693 102708634 ID=MsG0380017966.01.T01:exon:13415;Parent=MsG0380017966.01.T01
Chr3 exon 102709026 102709409 102709026 ID=MsG0380017966.01.T01:exon:13416;Parent=MsG0380017966.01.T01
Chr3 CDS 102707310 102707639 102707310 ID=MsG0380017966.01.T01:cds;Parent=MsG0380017966.01.T01
Chr3 CDS 102707744 102707848 102707744 ID=MsG0380017966.01.T01:cds;Parent=MsG0380017966.01.T01
Chr3 CDS 102707938 102708024 102707938 ID=MsG0380017966.01.T01:cds;Parent=MsG0380017966.01.T01
Chr3 CDS 102708380 102708529 102708380 ID=MsG0380017966.01.T01:cds;Parent=MsG0380017966.01.T01
Chr3 CDS 102708634 102708693 102708634 ID=MsG0380017966.01.T01:cds;Parent=MsG0380017966.01.T01
Chr3 CDS 102709026 102709079 102709026 ID=MsG0380017966.01.T01:cds;Parent=MsG0380017966.01.T01
Chr3 three_prime_UTR 102709080 102709409 102709080 ID=MsG0380017966.01.T01:three_prime_utr;Parent=MsG0380017966.01.T01
Gene Sequence

>MsG0380017966.01.T01

ATGAGAAATCGAAGAAATGAAATGGATAGAATATATGGTAAAATAGTAGAGGTGCGAGGTCGTGTGTGTATTGCAATGACTTCTTCCCTTTACACTTGCAGTTCCAATTCGTTAACTTGGTTGTTACAGAAACGGAACGTTGATCATTACGGAGGTTTCAGCTTGAGACGACGGGCATTGACGGTGTTGGACTTTCTCAATCGAGAAGGTCCACGGCGATTCTTATTTCATCCTTGCCTTTCACCTTCGTTTTCCTCTCTCCACCACCAGCGGAGGCCAGAGAAAGACGCAAGAAGAAGAACATTCCCATTGATGATTATGTCACTTCCCAAACTTCTTAGTTATTTTGTGATGTTTGATTCAGCTGATGGATTAAAATATTATGATTTTCTTGAGGGAAAAGGTCCAATAGCTGAAAAAGGATCAACTGTTCAGGTGCACTTTGATTGTTTATATCGGGGAATTACAGCTGTTTCAAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTGTAATAGCCCAGCCATATGAATTCAAGGTGGGAGCTCCGCCCGGAAAGGAAAGGAAGCGTGAATTTGTCGACAACCCAAATGGTCTATTCTCAGCACAAGCAGCACCAAAACCTCCACAAGCCATGTACACAATAGTTGAAGGAATGCGAGTGGGTGGAAAGCGAACTGTGATTGTTCCTCCTGAAAAAGGGTATGGAAAAAAGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAACTAAATATTGAACTTCTGCAAGTGGCATCTACATGA

Protein sequence

>MsG0380017966.01.T01

MRNRRNEMDRIYGKIVEVRGRVCIAMTSSLYTCSSNSLTWLLQKRNVDHYGGFSLRRRALTVLDFLNREGPRRFLFHPCLSPSFSSLHHQRRPEKDARRRTFPLMIMSLPKLLSYFVMFDSADGLKYYDFLEGKGPIAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPQAMYTIVEGMRVGGKRTVIVPPEKGYGKKGMNEIPPGATFELNIELLQVAST*