AlfalfaGEDB | MsG0380017966.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017966.01

KEGG: K01802
GO: -
PFAM: PF00254

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017966.01.T01	XP_003603857.1	73.246	228	33	3	43	261	20	228	2.09E-104	312

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017966.01.T01	Q9LM71	56.275	247	76	6	24	259	1	226	1.65E-72	224

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017966.01.T01	G7J5Z0	73.246	228	33	3	43	261	20	228	9.97e-105	312

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0380017966.01	0.879416	1.268840e-69	6.873960e-66
MsG0080047945.01	MsG0380017966.01	0.871314	7.511079e-67	3.016481e-63
MsG0080047955.01	MsG0380017966.01	0.866878	2.065243e-65	7.070350e-62
MsG0080047956.01	MsG0380017966.01	0.878217	3.357248e-69	1.738522e-65
MsG0080048059.01	MsG0380017966.01	0.892967	9.731093e-75	9.093297e-71
MsG0080048256.01	MsG0380017966.01	-0.807162	5.783999e-50	3.198506e-47
MsG0080048528.01	MsG0380017966.01	0.865127	7.397044e-65	2.380197e-61
MsG0080048611.01	MsG0380017966.01	0.862771	4.003006e-64	1.186106e-60
MsG0080048776.01	MsG0380017966.01	0.879676	1.025569e-69	5.610578e-66
MsG0080048777.01	MsG0380017966.01	0.848546	5.720169e-60	1.053425e-56

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017966.01.T01	MTR_3g115970	73.246	228	33	3	43	261	20	228	2.53e-108	312
MsG0380017966.01.T01	MTR_1g061850	41.912	136	55	3	123	258	132	243	6.12e-23	94.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017966.01.T01	AT1G20810	56.275	247	76	6	24	259	1	226	1.68e-73	224
MsG0380017966.01.T01	AT1G20810	63.218	174	43	1	99	251	45	218	1.96e-63	198
MsG0380017966.01.T01	AT3G10060	44.118	136	52	3	123	258	105	216	3.69e-24	97.4

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Find 73 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGAACGTTGATCATTA+CGG	0.500002	3:+102707439	MsG0380017966.01.T01:CDS
AAAGCCATATGAATTCAAGG+TGG	0.730629	3:+102708376	MsG0380017966.01.T01:intron
AAAGGGAATGAATGAGATTC+CGG	0.389171	3:+102708672	MsG0380017966.01.T01:CDS
AAAGGTCCAATAGCTGAAAA+AGG	0.351722	3:+102707813	MsG0380017966.01.T01:CDS
AAATATTGAACTTCTGCAAG+TGG	0.566237	3:+102709046	MsG0380017966.01.T01:CDS
AAGCCATATGAATTCAAGGT+GGG	0.651080	3:+102708377	MsG0380017966.01.T01:intron
AATAGTTGAAGGAATGCGAG+TGG	0.658026	3:+102708499	MsG0380017966.01.T01:CDS
AATATATGGTAAAATAGTAG+AGG	0.614260	3:+102707339	MsG0380017966.01.T01:CDS
AATGAAATGGATAGAATATA+TGG	0.315993	3:+102707325	MsG0380017966.01.T01:CDS
AATTGGAACTGCAAGTGTAA+AGG	0.497189	3:-102707396	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATTGAACTTCTGCAAG+TGG	+	Chr3:102709046-102709065	MsG0380017966.01.T01:CDS	30.0%
AGTCAAAAGACTACAAAAAG+AGG	-	Chr3:102709188-102709207	None:intergenic	30.0%
CAAAAAGAGGAAAACATCAA+TGG	-	Chr3:102709175-102709194	None:intergenic	30.0%
CACTTTGATTGTTTATATCG+GGG	+	Chr3:102707941-102707960	MsG0380017966.01.T01:CDS	30.0%
GAAGTGACATAATCATCAAT+GGG	-	Chr3:102707618-102707637	None:intergenic	30.0%
GAGAAATCGAAGAAATGAAA+TGG	+	Chr3:102707312-102707331	MsG0380017966.01.T01:CDS	30.0%
GATCTCAATATATATGTACG+TGG	+	Chr3:102709324-102709343	MsG0380017966.01.T01:three_prime_UTR	30.0%
GCACTTTGATTGTTTATATC+GGG	+	Chr3:102707940-102707959	MsG0380017966.01.T01:CDS	30.0%
TAACAACCAAGTTAACGAAT+TGG	-	Chr3:102707416-102707435	None:intergenic	30.0%
TAACTTGGTTGTTACAGAAA+CGG	+	Chr3:102707422-102707441	MsG0380017966.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	102707310	102709409	102707310	ID=MsG0380017966.01;Name=MsG0380017966.01
Chr3	mRNA	102707310	102709409	102707310	ID=MsG0380017966.01.T01;Parent=MsG0380017966.01;Name=MsG0380017966.01.T01;_AED=0.48;_eAED=0.49;_QI=0\|0.8\|0.66\|1\|0.6\|0.66\|6\|330\|261
Chr3	exon	102707310	102707639	102707310	ID=MsG0380017966.01.T01:exon:13411;Parent=MsG0380017966.01.T01
Chr3	exon	102707744	102707848	102707744	ID=MsG0380017966.01.T01:exon:13412;Parent=MsG0380017966.01.T01
Chr3	exon	102707938	102708024	102707938	ID=MsG0380017966.01.T01:exon:13413;Parent=MsG0380017966.01.T01
Chr3	exon	102708380	102708529	102708380	ID=MsG0380017966.01.T01:exon:13414;Parent=MsG0380017966.01.T01
Chr3	exon	102708634	102708693	102708634	ID=MsG0380017966.01.T01:exon:13415;Parent=MsG0380017966.01.T01
Chr3	exon	102709026	102709409	102709026	ID=MsG0380017966.01.T01:exon:13416;Parent=MsG0380017966.01.T01
Chr3	CDS	102707310	102707639	102707310	ID=MsG0380017966.01.T01:cds;Parent=MsG0380017966.01.T01
Chr3	CDS	102707744	102707848	102707744	ID=MsG0380017966.01.T01:cds;Parent=MsG0380017966.01.T01
Chr3	CDS	102707938	102708024	102707938	ID=MsG0380017966.01.T01:cds;Parent=MsG0380017966.01.T01
Chr3	CDS	102708380	102708529	102708380	ID=MsG0380017966.01.T01:cds;Parent=MsG0380017966.01.T01
Chr3	CDS	102708634	102708693	102708634	ID=MsG0380017966.01.T01:cds;Parent=MsG0380017966.01.T01
Chr3	CDS	102709026	102709079	102709026	ID=MsG0380017966.01.T01:cds;Parent=MsG0380017966.01.T01
Chr3	three_prime_UTR	102709080	102709409	102709080	ID=MsG0380017966.01.T01:three_prime_utr;Parent=MsG0380017966.01.T01

Gene Sequence

>MsG0380017966.01.T01

ATGAGAAATCGAAGAAATGAAATGGATAGAATATATGGTAAAATAGTAGAGGTGCGAGGTCGTGTGTGTATTGCAATGACTTCTTCCCTTTACACTTGCAGTTCCAATTCGTTAACTTGGTTGTTACAGAAACGGAACGTTGATCATTACGGAGGTTTCAGCTTGAGACGACGGGCATTGACGGTGTTGGACTTTCTCAATCGAGAAGGTCCACGGCGATTCTTATTTCATCCTTGCCTTTCACCTTCGTTTTCCTCTCTCCACCACCAGCGGAGGCCAGAGAAAGACGCAAGAAGAAGAACATTCCCATTGATGATTATGTCACTTCCCAAACTTCTTAGTTATTTTGTGATGTTTGATTCAGCTGATGGATTAAAATATTATGATTTTCTTGAGGGAAAAGGTCCAATAGCTGAAAAAGGATCAACTGTTCAGGTGCACTTTGATTGTTTATATCGGGGAATTACAGCTGTTTCAAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTGTAATAGCCCAGCCATATGAATTCAAGGTGGGAGCTCCGCCCGGAAAGGAAAGGAAGCGTGAATTTGTCGACAACCCAAATGGTCTATTCTCAGCACAAGCAGCACCAAAACCTCCACAAGCCATGTACACAATAGTTGAAGGAATGCGAGTGGGTGGAAAGCGAACTGTGATTGTTCCTCCTGAAAAAGGGTATGGAAAAAAGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAACTAAATATTGAACTTCTGCAAGTGGCATCTACATGA

Protein sequence

>MsG0380017966.01.T01

MRNRRNEMDRIYGKIVEVRGRVCIAMTSSLYTCSSNSLTWLLQKRNVDHYGGFSLRRRALTVLDFLNREGPRRFLFHPCLSPSFSSLHHQRRPEKDARRRTFPLMIMSLPKLLSYFVMFDSADGLKYYDFLEGKGPIAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPQAMYTIVEGMRVGGKRTVIVPPEKGYGKKGMNEIPPGATFELNIELLQVAST*