AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020807.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020807.01.T01 MTR_4g059540 92.982 228 13 1 14 241 90 314 2.29e-150 429
MsG0480020807.01.T01 MTR_4g059540 92.982 228 13 1 14 241 90 314 7.00e-150 431
MsG0480020807.01.T01 MTR_4g059540 92.982 228 13 1 14 241 90 314 2.17e-149 432
MsG0480020807.01.T01 MTR_4g059540 95.349 86 4 0 287 372 436 521 2.84e-50 176
MsG0480020807.01.T01 MTR_2g094130 57.034 263 96 10 1 256 53 305 1.93e-80 255
MsG0480020807.01.T01 MTR_2g094130 56.098 82 35 1 292 372 416 497 1.93e-19 90.1
MsG0480020807.01.T01 MTR_2g094130 57.034 263 96 10 1 256 53 305 2.13e-80 253
MsG0480020807.01.T01 MTR_2g094130 57.034 263 96 10 1 256 53 305 2.47e-80 254
MsG0480020807.01.T01 MTR_2g094130 56.098 82 35 1 292 372 421 502 2.15e-19 89.7
MsG0480020807.01.T01 MTR_2g094130 57.034 263 96 10 1 256 53 305 2.82e-80 253
MsG0480020807.01.T01 MTR_4g459440 95.349 86 4 0 287 372 53 138 6.06e-54 175
MsG0480020807.01.T01 MTR_1g064710 43.750 256 121 9 10 256 73 314 8.79e-52 177
MsG0480020807.01.T01 MTR_1g064710 43.750 256 121 9 10 256 73 314 9.62e-52 177
MsG0480020807.01.T01 MTR_1g064710 43.750 256 121 9 10 256 73 314 1.65e-51 177
MsG0480020807.01.T01 MTR_1g064710 43.750 256 121 9 10 256 73 314 4.18e-51 178
MsG0480020807.01.T01 MTR_1g064710 68.293 41 13 0 293 333 426 466 2.78e-12 68.2
MsG0480020807.01.T01 MTR_3g081490 39.431 246 131 6 11 241 37 279 2.43e-38 141
MsG0480020807.01.T01 MTR_3g081490 39.431 246 131 6 11 241 37 279 4.28e-38 142
MsG0480020807.01.T01 MTR_3g081490 39.431 246 131 6 11 241 37 279 4.42e-38 140
MsG0480020807.01.T01 MTR_2g020520 39.837 123 45 4 129 243 46 147 4.40e-17 81.6
MsG0480020807.01.T01 MTR_2g020520 33.182 220 102 8 39 243 67 256 5.24e-17 82.4
MsG0480020807.01.T01 MTR_2g020520 33.182 220 102 8 39 243 66 255 7.91e-17 81.6
MsG0480020807.01.T01 MTR_7g075700 56.250 48 20 1 192 239 25 71 5.94e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020807.01.T01 AT5G60580 52.893 242 104 7 16 256 79 311 1.68e-68 223
MsG0480020807.01.T01 AT5G60580 52.893 242 104 7 16 256 79 311 1.68e-68 223
MsG0480020807.01.T01 AT5G60580 52.893 242 104 7 16 256 79 311 2.73e-68 223
MsG0480020807.01.T01 AT5G60580 52.893 242 104 7 16 256 79 311 2.73e-68 223
MsG0480020807.01.T01 AT3G09760 42.366 262 126 8 6 256 73 320 6.98e-44 159
MsG0480020807.01.T01 AT5G03180 46.707 167 80 5 78 241 95 255 2.35e-35 134
MsG0480020807.01.T01 AT5G03180 46.707 167 80 5 78 241 130 290 4.90e-35 134
MsG0480020807.01.T01 AT5G03180 46.707 167 80 5 78 241 130 290 5.02e-35 133
MsG0480020807.01.T01 AT5G03180 46.707 167 76 6 78 241 130 286 4.03e-32 126
MsG0480020807.01.T01 AT5G03180 46.707 167 76 6 78 241 130 286 4.44e-32 125
MsG0480020807.01.T01 AT5G18760 40.566 106 60 2 200 305 201 303 1.52e-15 77.4
MsG0480020807.01.T01 AT3G06330 39.490 157 75 7 89 244 11 148 8.45e-15 74.7
MsG0480020807.01.T01 AT5G18760 31.225 253 116 9 72 305 90 303 9.21e-15 75.5
MsG0480020807.01.T01 AT3G06330 37.278 169 86 7 89 256 122 271 1.74e-14 74.3
MsG0480020807.01.T01 AT3G06330 37.278 169 86 7 89 256 122 271 1.97e-14 74.7
MsG0480020807.01.T01 AT3G06330 64.444 45 15 1 200 244 47 90 5.64e-13 68.6

Find 128 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATAGATGATTTGCCTTT+TGG 0.170375 4:+48666169 None:intergenic
CTTGCAACATTTGCTGGTTT+TGG 0.182361 4:-48663960 MsG0480020807.01.T01:CDS
TGCTGCCAAAATTGAGTTTC+AGG 0.184858 4:-48666141 MsG0480020807.01.T01:CDS
ACAAAGAATGTGCTATTAAA+TGG 0.203935 4:-48665419 MsG0480020807.01.T01:CDS
GACAATGATCTTGATATTAA+AGG 0.208947 4:+48666043 None:intergenic
CTATACCTGAAACTCAATTT+TGG 0.221918 4:+48666136 None:intergenic
TCATTGCCATTAGGAGAAAT+TGG 0.239649 4:-48665980 MsG0480020807.01.T01:CDS
ATCCTTCTTGCAACATTTGC+TGG 0.241759 4:-48663966 MsG0480020807.01.T01:CDS
CTATTAAATGGTTTAGTATA+AGG 0.243723 4:-48665407 MsG0480020807.01.T01:CDS
GGACTTCATTGTACAGCTTA+TGG 0.257784 4:-48663642 MsG0480020807.01.T01:three_prime_UTR
AATCTTCTGAACACTCTTCT+TGG 0.278807 4:+48666317 None:intergenic
GTGTTCTTGATGGTATTTCT+AGG 0.297442 4:+48666339 None:intergenic
AATTGATAAATTTACTAGAT+TGG 0.302002 4:+48663087 None:intergenic
TCAGTTTGGAGTGCTGCTTA+TGG 0.311114 4:-48663151 MsG0480020807.01.T01:three_prime_UTR
TTTCCACCATGAGTAGATTC+AGG 0.327029 4:+48665947 None:intergenic
CTACACACCGCCTCTTCTTC+AGG 0.329720 4:+48665522 None:intergenic
CAAAATTGAGTTTCAGGTAT+AGG 0.332561 4:-48666135 MsG0480020807.01.T01:CDS
TCCTTTACTCGAGGAGTAGA+AGG 0.334132 4:+48665714 None:intergenic
ACTCTTCTTGGTGTTCTTGA+TGG 0.346459 4:+48666329 None:intergenic
TTCTAGGCCTAGAAAATAGA+AGG 0.348270 4:+48663190 None:intergenic
CAAAGTACCTTGTGAATAAC+AGG 0.349490 4:+48667433 None:intergenic
TGCATAACTTATTGTGTATA+GGG 0.367788 4:-48663698 MsG0480020807.01.T01:three_prime_UTR
CATAAGAAAATTCACTCTCT+TGG 0.376527 4:+48666243 None:intergenic
GAGGAGTGTTTGTGCTTCAT+AGG 0.378767 4:-48663420 MsG0480020807.01.T01:three_prime_UTR
GAATCTACTCATGGTGGAAA+TGG 0.382585 4:-48665944 MsG0480020807.01.T01:CDS
GAATGTCCAATTTCTCCTAA+TGG 0.383436 4:+48665974 None:intergenic
GACATGTGATGTCTGCAAAA+AGG 0.391308 4:-48665377 MsG0480020807.01.T01:CDS
GGAGTAGGACTTGGTGTCAT+TGG 0.395438 4:+48666277 None:intergenic
TTGTCCTTGCTGTTGTTGGC+AGG 0.397366 4:+48665774 None:intergenic
AGAACTTCATCATTGCCATT+AGG 0.398079 4:-48665989 MsG0480020807.01.T01:CDS
ACAGCTACATTCCAACTTGA+AGG 0.402108 4:+48665464 None:intergenic
CTGCATAACTTATTGTGTAT+AGG 0.405691 4:-48663699 MsG0480020807.01.T01:three_prime_UTR
TGCTTGTTGAGTTCTTTAGA+TGG 0.407275 4:-48663914 MsG0480020807.01.T01:CDS
CTGTAAAGGCGAACTTGCTT+TGG 0.411554 4:-48665445 MsG0480020807.01.T01:CDS
ATAAGAAAATTCACTCTCTT+GGG 0.420956 4:+48666244 None:intergenic
TGCACGCAGTCAGCCACATC+TGG 0.432809 4:-48665177 MsG0480020807.01.T01:CDS
CACTATAGATTGATTGTGGT+TGG 0.433741 4:+48663788 None:intergenic
GGATCCAGAGTGTTCGAAAT+CGG 0.434250 4:-48665324 MsG0480020807.01.T01:CDS
ACAGCAAGGACAAAAGTATA+AGG 0.436445 4:-48665764 MsG0480020807.01.T01:CDS
TCTCAAATTATTTGCAGTGT+TGG 0.438892 4:+48663529 None:intergenic
ACGTCCCCGCCAAAGGATAC+TGG 0.439438 4:-48665672 MsG0480020807.01.T01:intron
ACCTTCCTGTCACTCTATTA+CGG 0.442572 4:-48665345 MsG0480020807.01.T01:CDS
TTGGTAAAATATTTACTCCT+AGG 0.443288 4:-48666018 MsG0480020807.01.T01:CDS
ATGTAGTTACTTTACTTACA+TGG 0.443306 4:-48663223 MsG0480020807.01.T01:three_prime_UTR
ATAGGATGATGATGATTCAA+TGG 0.445528 4:-48666413 MsG0480020807.01.T01:intron
CCTGGATCTGCAACACCAAA+AGG 0.448813 4:-48666184 MsG0480020807.01.T01:CDS
TATTAAATGGTTTAGTATAA+GGG 0.452803 4:-48665406 MsG0480020807.01.T01:CDS
ACTGTAACAACGCCACGTTC+AGG 0.453422 4:-48663816 MsG0480020807.01.T01:CDS
TTGACTATACCAGTATCCTT+TGG 0.457337 4:+48665663 None:intergenic
AAGTAACTACATATTGCATT+TGG 0.459146 4:+48663234 None:intergenic
TGCTGTCCTGCTTGTATCAT+CGG 0.471577 4:+48663846 None:intergenic
GGATATAGCTTCTCTTGCTA+TGG 0.477328 4:-48663621 MsG0480020807.01.T01:three_prime_UTR
CGTGGCGTTGTTACAGTTCG+AGG 0.483224 4:+48663822 None:intergenic
TTCCACCATGAGTAGATTCA+GGG 0.484995 4:+48665948 None:intergenic
CTATACCAGTATCCTTTGGC+GGG 0.485212 4:+48665667 None:intergenic
TCCTTCTACTCCTCGAGTAA+AGG 0.487258 4:-48665715 MsG0480020807.01.T01:CDS
ACTCTCTTGGGAGTAGGAGT+TGG 0.487747 4:+48666256 None:intergenic
TAACTTATTGTGTATAGGGT+AGG 0.492605 4:-48663694 MsG0480020807.01.T01:three_prime_UTR
TTGTACTGATCTATTAAGTA+CGG 0.493385 4:-48663581 MsG0480020807.01.T01:three_prime_UTR
TTGAGTTCTTTAGATGGAGA+AGG 0.494098 4:-48663908 MsG0480020807.01.T01:CDS
TAGATTGATTGTGGTTGGAT+TGG 0.494569 4:+48663793 None:intergenic
TAGGATGATGATGATTCAAT+GGG 0.495968 4:-48666412 MsG0480020807.01.T01:five_prime_UTR
GTAGGAGTTGGAGTAGGACT+TGG 0.496630 4:+48666268 None:intergenic
GCTCCGACAAATAATTCTCC+TGG 0.502053 4:-48666202 MsG0480020807.01.T01:CDS
GTCTGATCAGACTTCAAGTT+CGG 0.504324 4:-48665151 MsG0480020807.01.T01:intron
GAACATCACATGTTCCTCCT+AGG 0.520521 4:-48666379 MsG0480020807.01.T01:five_prime_UTR
TGGATCCGTAATAGAGTGAC+AGG 0.523696 4:+48665340 None:intergenic
GGCGGTGTGTAGAATCTGTC+TGG 0.532774 4:-48665511 MsG0480020807.01.T01:CDS
AACTTATTGTGTATAGGGTA+GGG 0.536965 4:-48663693 MsG0480020807.01.T01:three_prime_UTR
AAGTTGGAATGTAGCTGTAA+AGG 0.537209 4:-48665459 MsG0480020807.01.T01:CDS
CCTGCTTGTATCATCGGTAG+AGG 0.537887 4:+48663852 None:intergenic
GATCCAGGAGAATTATTTGT+CGG 0.538191 4:+48666199 None:intergenic
TTGTGCTTCATAGGTACTGA+TGG 0.540626 4:-48663411 MsG0480020807.01.T01:three_prime_UTR
AAAGTGAGAGTGAAGGGTTG+AGG 0.541365 4:-48663304 MsG0480020807.01.T01:three_prime_UTR
GGACAAAAGTATAAGGAGGA+TGG 0.553352 4:-48665757 MsG0480020807.01.T01:CDS
TCTTCCTCCTGTTATTCACA+AGG 0.553528 4:-48667440 MsG0480020807.01.T01:intron
ATATCAAGATCATTGTCACT+TGG 0.558834 4:-48666037 MsG0480020807.01.T01:CDS
TCTTTAGATGGAGAAGGAGA+TGG 0.561098 4:-48663902 MsG0480020807.01.T01:CDS
ATGTGACACGTGTCTGACAC+CGG 0.568601 4:-48663457 MsG0480020807.01.T01:three_prime_UTR
AAATTCACTCTCTTGGGAGT+AGG 0.568812 4:+48666250 None:intergenic
TGTGACACGTGTCTGACACC+GGG 0.571058 4:-48663456 MsG0480020807.01.T01:three_prime_UTR
GGTGGAAATGGAAGTGTTGG+CGG 0.573518 4:-48665932 MsG0480020807.01.T01:CDS
TAGGTCAAAGTGAGAGTGAA+GGG 0.574000 4:-48663310 MsG0480020807.01.T01:three_prime_UTR
CATTCCGATTTCGAACACTC+TGG 0.575417 4:+48665320 None:intergenic
GACACCGGCAGATATTGAAA+AGG 0.576803 4:-48666113 MsG0480020807.01.T01:CDS
ACTATACCAGTATCCTTTGG+CGG 0.577961 4:+48665666 None:intergenic
GCTTCTCATGACAAAGCTAG+TGG 0.578689 4:-48663722 MsG0480020807.01.T01:three_prime_UTR
TTCAGCACATGAAAACCAGA+AGG 0.578828 4:-48663384 MsG0480020807.01.T01:three_prime_UTR
GTTTGGAGTGCTGCTTATGG+AGG 0.579410 4:-48663148 MsG0480020807.01.T01:three_prime_UTR
TCCTCGGATTAGACGTGTCC+CGG 0.579730 4:+48663438 None:intergenic
TCATTTCCTTCCTTTACTCG+AGG 0.581239 4:+48665705 None:intergenic
AAAAGGCGAATACACCTACT+CGG 0.581781 4:-48666096 MsG0480020807.01.T01:CDS
AGGAGGCGAGACCTTCAAGT+TGG 0.587069 4:-48665475 MsG0480020807.01.T01:CDS
GTTGAAGACGTCCCCGCCAA+AGG 0.587869 4:-48665679 MsG0480020807.01.T01:CDS
TTTGCACTATAGATTGATTG+TGG 0.589452 4:+48663784 None:intergenic
AACCAGCAAATGTTGCAAGA+AGG 0.594657 4:+48663964 None:intergenic
TATGAAGCACAAACACTCCT+CGG 0.597121 4:+48663422 None:intergenic
TCTACTCCTCGAGTAAAGGA+AGG 0.597280 4:-48665711 MsG0480020807.01.T01:CDS
CTGCTTGTATCATCGGTAGA+GGG 0.597943 4:+48663853 None:intergenic
GAGTTTCAGGTATAGGACAC+CGG 0.599623 4:-48666128 MsG0480020807.01.T01:CDS
TCAAACCCTGAATCTACTCA+TGG 0.600239 4:-48665953 MsG0480020807.01.T01:CDS
GAAGAGGAAACTTCCCGAGT+AGG 0.600451 4:+48666082 None:intergenic
CATGGTGGAAATGGAAGTGT+TGG 0.606041 4:-48665935 MsG0480020807.01.T01:CDS
TCAGCACATGAAAACCAGAA+GGG 0.614755 4:-48663383 MsG0480020807.01.T01:three_prime_UTR
CAGAGTGTTCGAAATCGGAA+TGG 0.618284 4:-48665319 MsG0480020807.01.T01:intron
TTGGGAGTAGGAGTTGGAGT+AGG 0.618886 4:+48666262 None:intergenic
TTAGGTCAAAGTGAGAGTGA+AGG 0.619789 4:-48663311 MsG0480020807.01.T01:three_prime_UTR
AGCACTCCAAACTGAAGATG+TGG 0.621691 4:+48663159 None:intergenic
TGAAGATATACCTGAAGAAG+AGG 0.622698 4:-48665532 MsG0480020807.01.T01:CDS
AACCCTGAATCTACTCATGG+TGG 0.624757 4:-48665950 MsG0480020807.01.T01:CDS
CTGATCAGACGATCCAGATG+TGG 0.626490 4:+48665164 None:intergenic
AAAGGCGAATACACCTACTC+GGG 0.630530 4:-48666095 MsG0480020807.01.T01:CDS
CCTCTACCGATGATACAAGC+AGG 0.638530 4:-48663852 MsG0480020807.01.T01:CDS
ATTATGTGTCAGTGTCGTGT+TGG 0.642671 4:-48663486 MsG0480020807.01.T01:three_prime_UTR
GCAAGGACAAAAGTATAAGG+AGG 0.650576 4:-48665761 MsG0480020807.01.T01:CDS
TATACCAGTATCCTTTGGCG+GGG 0.659834 4:+48665668 None:intergenic
TCCGTAATAGAGTGACAGGA+AGG 0.661488 4:+48665344 None:intergenic
GCTTCATTAGAGCAACAACA+TGG 0.664561 4:-48663876 MsG0480020807.01.T01:CDS
GCTTAAAATCATACACTGAG+AGG 0.668806 4:+48665908 None:intergenic
TGGTTGGATTGGCCTGAACG+TGG 0.672050 4:+48663804 None:intergenic
ATTAAGTACGGATACAGACA+CGG 0.675640 4:-48663569 MsG0480020807.01.T01:three_prime_UTR
AATGCCTGCCAACAACAGCA+AGG 0.677333 4:-48665778 MsG0480020807.01.T01:CDS
ACCGGGACACGTCTAATCCG+AGG 0.677375 4:-48663439 MsG0480020807.01.T01:three_prime_UTR
AGATATACCTGAAGAAGAGG+CGG 0.681280 4:-48665529 MsG0480020807.01.T01:CDS
CTGGTTGAATTATGTGAAGG+AGG 0.682969 4:-48665492 MsG0480020807.01.T01:CDS
AGTACCTTGTGAATAACAGG+AGG 0.692814 4:+48667436 None:intergenic
AGAAAATAAACATGTCACTG+AGG 0.695376 4:-48667509 MsG0480020807.01.T01:five_prime_UTR
TGTCTGGTTGAATTATGTGA+AGG 0.716899 4:-48665495 MsG0480020807.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGATAAATTTACTAGAT+TGG + Chr4:48667559-48667578 None:intergenic 15.0%
!! AATTTAAACAAAATAATGTC+AGG + Chr4:48666322-48666341 None:intergenic 15.0%
!! ATATTTAGTGATTAAAATGA+CGG - Chr4:48664109-48664128 MsG0480020807.01.T01:intron 15.0%
!! ATCATAAAAAATCAGAAATT+AGG + Chr4:48666618-48666637 None:intergenic 15.0%
!! ATTTAAACAAAATAATGTCA+GGG + Chr4:48666321-48666340 None:intergenic 15.0%
!! TATTAAATGGTTTAGTATAA+GGG - Chr4:48665237-48665256 MsG0480020807.01.T01:intron 15.0%
!!! AATTTGTTTTCCAAAAAATT+TGG - Chr4:48663462-48663481 MsG0480020807.01.T01:three_prime_UTR 15.0%
!!! CTATTTCATTTTGTATTTAT+AGG - Chr4:48664212-48664231 MsG0480020807.01.T01:intron 15.0%
!!! TCTTTGATTTTTAATTCATT+TGG - Chr4:48663649-48663668 MsG0480020807.01.T01:three_prime_UTR 15.0%
!! AAAAGATCTTTATTGGATTT+GGG + Chr4:48665567-48665586 None:intergenic 20.0%
!! AAAATTTGAAAACCAACAAA+AGG + Chr4:48663429-48663448 None:intergenic 20.0%
!! AAATCAGAAAAGATCTTTAT+TGG + Chr4:48665574-48665593 None:intergenic 20.0%
!! AAATTGACAAGTTAAAATGA+TGG + Chr4:48664798-48664817 None:intergenic 20.0%
!! AGAAAACAGATAAAATTAGT+TGG - Chr4:48663807-48663826 MsG0480020807.01.T01:CDS 20.0%
!! CTATTAAATGGTTTAGTATA+AGG - Chr4:48665236-48665255 MsG0480020807.01.T01:intron 20.0%
!! TCCACATTATAAATTCAAAA+TGG + Chr4:48666087-48666106 None:intergenic 20.0%
!! TTGTATGATAAAGATTGATT+TGG - Chr4:48665426-48665445 MsG0480020807.01.T01:CDS 20.0%
!!! ATTATTTTCATGAGATAAGT+TGG + Chr4:48664768-48664787 None:intergenic 20.0%
!!! GTATCTTTTAATAGTCAATT+TGG - Chr4:48663941-48663960 MsG0480020807.01.T01:CDS 20.0%
!!! TCCATTTTGAATTTATAATG+TGG - Chr4:48666083-48666102 MsG0480020807.01.T01:CDS 20.0%
!!! TCTGATTTTCTCTTTTTTAT+AGG - Chr4:48665913-48665932 MsG0480020807.01.T01:intron 20.0%
!!! TTCATTTTAGATTGGTAATT+TGG + Chr4:48663566-48663585 None:intergenic 20.0%
!!! TTTATTTTCAAATGCTTTCT+TGG - Chr4:48665055-48665074 MsG0480020807.01.T01:intron 20.0%
!!! TTTTAATCACTAAATATGTG+AGG + Chr4:48664106-48664125 None:intergenic 20.0%
!!! TTTTTATAGGTGACAAAAAT+GGG - Chr4:48665926-48665945 MsG0480020807.01.T01:CDS 20.0%
!!! TTTTTTATAGGTGACAAAAA+TGG - Chr4:48665925-48665944 MsG0480020807.01.T01:CDS 20.0%
! AACTGCATAATTCAAAGTAA+AGG + Chr4:48663510-48663529 None:intergenic 25.0%
! AAGTAACTACATATTGCATT+TGG + Chr4:48667412-48667431 None:intergenic 25.0%
! AATATAGTTCTCAAAGAAAG+CGG + Chr4:48666438-48666457 None:intergenic 25.0%
! AATTGAGCAGACAAATAAAA+TGG + Chr4:48665675-48665694 None:intergenic 25.0%
! ACAATTGAACTGATTAATAG+TGG + Chr4:48663833-48663852 None:intergenic 25.0%
! AGTTCAATTGTATTGTAGTT+TGG - Chr4:48663842-48663861 MsG0480020807.01.T01:CDS 25.0%
! ATAAGAAAATTCACTCTCTT+GGG + Chr4:48664402-48664421 None:intergenic 25.0%
! GAAAAGATCTTTATTGGATT+TGG + Chr4:48665568-48665587 None:intergenic 25.0%
! GACAATGATCTTGATATTAA+AGG + Chr4:48664603-48664622 None:intergenic 25.0%
! TCAAAACTATAGTACTTTGT+CGG - Chr4:48663755-48663774 MsG0480020807.01.T01:exon 25.0%
! TGCATAACTTATTGTGTATA+GGG - Chr4:48666945-48666964 MsG0480020807.01.T01:intron 25.0%
! TTGCTCAAGAAAACAAAAAT+AGG + Chr4:48665748-48665767 None:intergenic 25.0%
! TTGGTAAAATATTTACTCCT+AGG - Chr4:48664625-48664644 MsG0480020807.01.T01:intron 25.0%
!! ACAAAGAATGTGCTATTAAA+TGG - Chr4:48665224-48665243 MsG0480020807.01.T01:intron 25.0%
!! ACTTTTATCACACATCTATA+TGG - Chr4:48666979-48666998 MsG0480020807.01.T01:intron 25.0%
!! AGAGATGATTCATTTTAGAT+TGG + Chr4:48663574-48663593 None:intergenic 25.0%
!! ATGTAGTTACTTTACTTACA+TGG - Chr4:48667420-48667439 MsG0480020807.01.T01:intron 25.0%
!! CTTTTATCACACATCTATAT+GGG - Chr4:48666980-48666999 MsG0480020807.01.T01:intron 25.0%
!! TAATGATAGTATCCTTTTGT+TGG - Chr4:48663414-48663433 MsG0480020807.01.T01:three_prime_UTR 25.0%
!! TGTATTTCCTTCTATTTTCT+AGG - Chr4:48667446-48667465 MsG0480020807.01.T01:five_prime_UTR 25.0%
!!! ATCAAAAGCTCCAAATTTTT+TGG + Chr4:48663475-48663494 None:intergenic 25.0%
!!! TTTTCTCAAATGAAAAGTAC+AGG + Chr4:48666468-48666487 None:intergenic 25.0%
!!! TTTTTGGCTTTCTTTTTTGT+AGG - Chr4:48667283-48667302 MsG0480020807.01.T01:intron 25.0%
AACTTATTGTGTATAGGGTA+GGG - Chr4:48666950-48666969 MsG0480020807.01.T01:intron 30.0%
AGAAAATAAACATGTCACTG+AGG - Chr4:48663134-48663153 MsG0480020807.01.T01:three_prime_UTR 30.0%
ATATCAAGATCATTGTCACT+TGG - Chr4:48664606-48664625 MsG0480020807.01.T01:intron 30.0%
CATAAGAAAATTCACTCTCT+TGG + Chr4:48664403-48664422 None:intergenic 30.0%
CTGATTCATTAGAATGAACT+GGG + Chr4:48666535-48666554 None:intergenic 30.0%
CTGCATAACTTATTGTGTAT+AGG - Chr4:48666944-48666963 MsG0480020807.01.T01:intron 30.0%
CTTCTTACTAAGGTTCTTTA+AGG - Chr4:48663290-48663309 MsG0480020807.01.T01:three_prime_UTR 30.0%
GATGATGTTTCTTCTTACTA+AGG - Chr4:48663280-48663299 MsG0480020807.01.T01:three_prime_UTR 30.0%
GATTAAAATGACGGTTTACT+CGG - Chr4:48664118-48664137 MsG0480020807.01.T01:intron 30.0%
TAACTTATTGTGTATAGGGT+AGG - Chr4:48666949-48666968 MsG0480020807.01.T01:intron 30.0%
TAATCACTAAATATGTGAGG+TGG + Chr4:48664103-48664122 None:intergenic 30.0%
TCTCAAATTATTTGCAGTGT+TGG + Chr4:48667117-48667136 None:intergenic 30.0%
TTTGCACTATAGATTGATTG+TGG + Chr4:48666862-48666881 None:intergenic 30.0%
! ACTGATTCATTAGAATGAAC+TGG + Chr4:48666536-48666555 None:intergenic 30.0%
! AGATGTGGAAAATCTTTTCT+AGG + Chr4:48667472-48667491 None:intergenic 30.0%
! ATAGGATGATGATGATTCAA+TGG - Chr4:48664230-48664249 MsG0480020807.01.T01:intron 30.0%
! ATTTGTCTGCTCAATTTTGT+AGG - Chr4:48665679-48665698 MsG0480020807.01.T01:CDS 30.0%
! CAAAATTGAGTTTCAGGTAT+AGG - Chr4:48664508-48664527 MsG0480020807.01.T01:intron 30.0%
! CTATACCTGAAACTCAATTT+TGG + Chr4:48664510-48664529 None:intergenic 30.0%
! GTATAATCACATGTATCGAT+TGG + Chr4:48666230-48666249 None:intergenic 30.0%
! TAGGATGATGATGATTCAAT+GGG - Chr4:48664231-48664250 MsG0480020807.01.T01:intron 30.0%
! TGACACAATGATTTTGCTTT+AGG - Chr4:48667314-48667333 MsG0480020807.01.T01:intron 30.0%
! TTTGTCTGCTCAATTTTGTA+GGG - Chr4:48665680-48665699 MsG0480020807.01.T01:CDS 30.0%
! TTTTCTTATGACTTCTCGTT+CGG - Chr4:48664413-48664432 MsG0480020807.01.T01:intron 30.0%
! TTTTGCAGAAAAAAGAGACT+CGG - Chr4:48664819-48664838 MsG0480020807.01.T01:intron 30.0%
!! AGAAGATTTTGTTTCTTCCT+AGG + Chr4:48664284-48664303 None:intergenic 30.0%
!! ATCATTTTTCATGAATGCAG+AGG + Chr4:48665030-48665049 None:intergenic 30.0%
!! CTTATAGATGATTTGCCTTT+TGG + Chr4:48664477-48664496 None:intergenic 30.0%
!! TATTTGTTATCAACGATCAG+TGG - Chr4:48663600-48663619 MsG0480020807.01.T01:three_prime_UTR 30.0%
!! TGTGTTTTCTGTTAGTTTCA+TGG - Chr4:48664002-48664021 MsG0480020807.01.T01:intron 30.0%
!! TTTCCTTCTTCTCTTTGTTT+TGG - Chr4:48663245-48663264 MsG0480020807.01.T01:three_prime_UTR 30.0%
!!! GTACTATAGTTTTGACATAC+TGG + Chr4:48663750-48663769 None:intergenic 30.0%
!!! TCTCTTTGTTTTGGTTCTTT+TGG - Chr4:48663254-48663273 MsG0480020807.01.T01:three_prime_UTR 30.0%
AACACTCAAACCAATCCTTA+TGG - Chr4:48663358-48663377 MsG0480020807.01.T01:three_prime_UTR 35.0%
AAGTTGGAATGTAGCTGTAA+AGG - Chr4:48665184-48665203 MsG0480020807.01.T01:CDS 35.0%
AATCTTCTGAACACTCTTCT+TGG + Chr4:48664329-48664348 None:intergenic 35.0%
ACAAAATAATGTCAGGGTTG+TGG + Chr4:48666315-48666334 None:intergenic 35.0%
ACAGGAAAATGGAAGAGATA+TGG + Chr4:48665966-48665985 None:intergenic 35.0%
AGAACTTCATCATTGCCATT+AGG - Chr4:48664654-48664673 MsG0480020807.01.T01:intron 35.0%
AGACCTAATACACAGGAAAA+TGG + Chr4:48665977-48665996 None:intergenic 35.0%
ATAACCGTCTCATACATTCA+AGG + Chr4:48663896-48663915 None:intergenic 35.0%
ATGCTAATGCTTCTCTATGT+AGG + Chr4:48666595-48666614 None:intergenic 35.0%
CACTATAGATTGATTGTGGT+TGG + Chr4:48666858-48666877 None:intergenic 35.0%
CATGATATACAGAGTTGCAA+TGG + Chr4:48666150-48666169 None:intergenic 35.0%
CATGCAAATATGCTTCGATT+AGG - Chr4:48665611-48665630 MsG0480020807.01.T01:intron 35.0%
CATTGCAACTCTGTATATCA+TGG - Chr4:48666148-48666167 MsG0480020807.01.T01:CDS 35.0%
GAACCAAAACAAAGAGAAGA+AGG + Chr4:48663251-48663270 None:intergenic 35.0%
GAATGTCCAATTTCTCCTAA+TGG + Chr4:48664672-48664691 None:intergenic 35.0%
GAGAAAATCAGAAGCTACTT+TGG + Chr4:48665905-48665924 None:intergenic 35.0%
GATCCAGGAGAATTATTTGT+CGG + Chr4:48664447-48664466 None:intergenic 35.0%
GCTTAAAATCATACACTGAG+AGG + Chr4:48664738-48664757 None:intergenic 35.0%
TAGATTGATTGTGGTTGGAT+TGG + Chr4:48666853-48666872 None:intergenic 35.0%
TAGTCCTTGAATGTATGAGA+CGG - Chr4:48663889-48663908 MsG0480020807.01.T01:CDS 35.0%
TCATTGCCATTAGGAGAAAT+TGG - Chr4:48664663-48664682 MsG0480020807.01.T01:intron 35.0%
TCTATGACATCATCAACCAT+GGG - Chr4:48666004-48666023 MsG0480020807.01.T01:CDS 35.0%
TGAAGATATACCTGAAGAAG+AGG - Chr4:48665111-48665130 MsG0480020807.01.T01:intron 35.0%
TGCTAATGCTTCTCTATGTA+GGG + Chr4:48666594-48666613 None:intergenic 35.0%
TGTCTGGTTGAATTATGTGA+AGG - Chr4:48665148-48665167 MsG0480020807.01.T01:intron 35.0%
TTCTAGGCCTAGAAAATAGA+AGG + Chr4:48667456-48667475 None:intergenic 35.0%
TTCTCGTATGTGTCTTTCAT+CGG - Chr4:48663964-48663983 MsG0480020807.01.T01:CDS 35.0%
TTGACTATACCAGTATCCTT+TGG + Chr4:48664983-48665002 None:intergenic 35.0%
TTGAGTTCTTTAGATGGAGA+AGG - Chr4:48666735-48666754 MsG0480020807.01.T01:intron 35.0%
! ACAGCAAGGACAAAAGTATA+AGG - Chr4:48664879-48664898 MsG0480020807.01.T01:intron 35.0%
! ATGAAAACCAGAAGGGTTTT+TGG - Chr4:48667267-48667286 MsG0480020807.01.T01:intron 35.0%
! CAAAGTACCTTGTGAATAAC+AGG + Chr4:48663213-48663232 None:intergenic 35.0%
! CTTCCATTTTCCTGTGTATT+AGG - Chr4:48665971-48665990 MsG0480020807.01.T01:CDS 35.0%
! GAAGATGATGATGATGATGA+TGG - Chr4:48665088-48665107 MsG0480020807.01.T01:intron 35.0%
! GATGAAGTTCTTTTCATCCT+AGG + Chr4:48664645-48664664 None:intergenic 35.0%
! GATTTTCCACATCTTCAGTT+TGG - Chr4:48667478-48667497 MsG0480020807.01.T01:five_prime_UTR 35.0%
! GTGTTCTTGATGGTATTTCT+AGG + Chr4:48664307-48664326 None:intergenic 35.0%
! TGCTTGTTGAGTTCTTTAGA+TGG - Chr4:48666729-48666748 MsG0480020807.01.T01:intron 35.0%
! TTATGATATCTGTCACTTGC+AGG - Chr4:48666631-48666650 MsG0480020807.01.T01:intron 35.0%
! TTGTTTTCTTGAGCAACTGT+TGG - Chr4:48665752-48665771 MsG0480020807.01.T01:CDS 35.0%
!! AGATTTTGTTTCTTCCTAGG+AGG + Chr4:48664281-48664300 None:intergenic 35.0%
!! ATAAGGATTGGTTTGAGTGT+TGG + Chr4:48663359-48663378 None:intergenic 35.0%
!!! GCTTTCTTTTTTGTAGGCTT+GGG - Chr4:48667289-48667308 MsG0480020807.01.T01:intron 35.0%
AAAAGGCGAATACACCTACT+CGG - Chr4:48664547-48664566 MsG0480020807.01.T01:intron 40.0%
AAATTCACTCTCTTGGGAGT+AGG + Chr4:48664396-48664415 None:intergenic 40.0%
AACCAGCAAATGTTGCAAGA+AGG + Chr4:48666682-48666701 None:intergenic 40.0%
AAGAAAGCCAAAAACCCTTC+TGG + Chr4:48667277-48667296 None:intergenic 40.0%
ACAGCTACATTCCAACTTGA+AGG + Chr4:48665182-48665201 None:intergenic 40.0%
ACCTTCCTGTCACTCTATTA+CGG - Chr4:48665298-48665317 MsG0480020807.01.T01:intron 40.0%
ACTATACCAGTATCCTTTGG+CGG + Chr4:48664980-48664999 None:intergenic 40.0%
ACTCAAACCAATCCTTATGG+TGG - Chr4:48663361-48663380 MsG0480020807.01.T01:three_prime_UTR 40.0%
AGATATACCTGAAGAAGAGG+CGG - Chr4:48665114-48665133 MsG0480020807.01.T01:intron 40.0%
AGTACCTTGTGAATAACAGG+AGG + Chr4:48663210-48663229 None:intergenic 40.0%
ATCCTTCTTGCAACATTTGC+TGG - Chr4:48666677-48666696 MsG0480020807.01.T01:intron 40.0%
ATGCTAACAATGACAAGCAC+CGG + Chr4:48665720-48665739 None:intergenic 40.0%
ATGTGATGTCTGCAAAAAGG+AGG - Chr4:48665269-48665288 MsG0480020807.01.T01:intron 40.0%
ATTATGTGTCAGTGTCGTGT+TGG - Chr4:48667157-48667176 MsG0480020807.01.T01:intron 40.0%
CTCTATGACATCATCAACCA+TGG - Chr4:48666003-48666022 MsG0480020807.01.T01:CDS 40.0%
CTGGTTGAATTATGTGAAGG+AGG - Chr4:48665151-48665170 MsG0480020807.01.T01:intron 40.0%
GACATGTGATGTCTGCAAAA+AGG - Chr4:48665266-48665285 MsG0480020807.01.T01:intron 40.0%
GCTTCATTAGAGCAACAACA+TGG - Chr4:48666767-48666786 MsG0480020807.01.T01:intron 40.0%
GCTTGTCATTGTTAGCATGT+TGG - Chr4:48665722-48665741 MsG0480020807.01.T01:CDS 40.0%
GGACTTCATTGTACAGCTTA+TGG - Chr4:48667001-48667020 MsG0480020807.01.T01:intron 40.0%
GGATATAGCTTCTCTTGCTA+TGG - Chr4:48667022-48667041 MsG0480020807.01.T01:intron 40.0%
GGGATTCGTCGTATTGAATT+AGG + Chr4:48666515-48666534 None:intergenic 40.0%
TAGGTCAAAGTGAGAGTGAA+GGG - Chr4:48667333-48667352 MsG0480020807.01.T01:intron 40.0%
TAGGTGACAAAAATGGGAAC+TGG - Chr4:48665932-48665951 MsG0480020807.01.T01:CDS 40.0%
TATGAAGCACAAACACTCCT+CGG + Chr4:48667224-48667243 None:intergenic 40.0%
TCAAACCCTGAATCTACTCA+TGG - Chr4:48664690-48664709 MsG0480020807.01.T01:intron 40.0%
TCAGCACATGAAAACCAGAA+GGG - Chr4:48667260-48667279 MsG0480020807.01.T01:intron 40.0%
TCATTTCCTTCCTTTACTCG+AGG + Chr4:48664941-48664960 None:intergenic 40.0%
TCTGATCCAGATATGGCTAA+CGG - Chr4:48665534-48665553 MsG0480020807.01.T01:CDS 40.0%
TCTTCCTCCTGTTATTCACA+AGG - Chr4:48663203-48663222 MsG0480020807.01.T01:three_prime_UTR 40.0%
TCTTTAGATGGAGAAGGAGA+TGG - Chr4:48666741-48666760 MsG0480020807.01.T01:intron 40.0%
TGCATGACTCACTCATTCAT+TGG + Chr4:48665597-48665616 None:intergenic 40.0%
TGCTGCCAAAATTGAGTTTC+AGG - Chr4:48664502-48664521 MsG0480020807.01.T01:intron 40.0%
TTAGCCATATCTGGATCAGA+CGG + Chr4:48665534-48665553 None:intergenic 40.0%
TTAGGTCAAAGTGAGAGTGA+AGG - Chr4:48667332-48667351 MsG0480020807.01.T01:intron 40.0%
TTCAGCACATGAAAACCAGA+AGG - Chr4:48667259-48667278 MsG0480020807.01.T01:intron 40.0%
TTCCACCATGAGTAGATTCA+GGG + Chr4:48664698-48664717 None:intergenic 40.0%
TTTCCACCATGAGTAGATTC+AGG + Chr4:48664699-48664718 None:intergenic 40.0%
! CGCGCATATATTTTACTCCT+TGG - Chr4:48666409-48666428 MsG0480020807.01.T01:five_prime_UTR 40.0%
! CTGCTCAATTTTGTAGGGTT+TGG - Chr4:48665685-48665704 MsG0480020807.01.T01:CDS 40.0%
! GAATCTACTCATGGTGGAAA+TGG - Chr4:48664699-48664718 MsG0480020807.01.T01:intron 40.0%
! GCAAGGACAAAAGTATAAGG+AGG - Chr4:48664882-48664901 MsG0480020807.01.T01:intron 40.0%
! GGACAAAAGTATAAGGAGGA+TGG - Chr4:48664886-48664905 MsG0480020807.01.T01:intron 40.0%
! GTCTGATCAGACTTCAAGTT+CGG - Chr4:48665492-48665511 MsG0480020807.01.T01:CDS 40.0%
! TCAATTTTGTAGGGTTTGGC+AGG - Chr4:48665689-48665708 MsG0480020807.01.T01:CDS 40.0%
! TTCGCCTTTTCAATATCTGC+CGG + Chr4:48664537-48664556 None:intergenic 40.0%
!! ACTCTTCTTGGTGTTCTTGA+TGG + Chr4:48664317-48664336 None:intergenic 40.0%
!! ACTTTGTCGGTATCGATGAA+TGG - Chr4:48663768-48663787 MsG0480020807.01.T01:CDS 40.0%
!! CATGGTTGATGATGTCATAG+AGG + Chr4:48666005-48666024 None:intergenic 40.0%
!! CTTTGTCGGTATCGATGAAT+GGG - Chr4:48663769-48663788 MsG0480020807.01.T01:CDS 40.0%
!! GGTTTTGGTGTAGTAATGAG+TGG - Chr4:48666698-48666717 MsG0480020807.01.T01:intron 40.0%
!! TTGTGCTTCATAGGTACTGA+TGG - Chr4:48667232-48667251 MsG0480020807.01.T01:intron 40.0%
!!! ACTTTTGTCCTTGCTGTTGT+TGG + Chr4:48664876-48664895 None:intergenic 40.0%
!!! CTTGCAACATTTGCTGGTTT+TGG - Chr4:48666683-48666702 MsG0480020807.01.T01:intron 40.0%
!!! GGCTTTCTTTTTTGTAGGCT+TGG - Chr4:48667288-48667307 MsG0480020807.01.T01:intron 40.0%
AAAGGCGAATACACCTACTC+GGG - Chr4:48664548-48664567 MsG0480020807.01.T01:intron 45.0%
AAAGTGAGAGTGAAGGGTTG+AGG - Chr4:48667339-48667358 MsG0480020807.01.T01:intron 45.0%
AACCCTGAATCTACTCATGG+TGG - Chr4:48664693-48664712 MsG0480020807.01.T01:intron 45.0%
AACTCCACCACCATAAGGAT+TGG + Chr4:48663371-48663390 None:intergenic 45.0%
AAGCAAACTCCACCACCATA+AGG + Chr4:48663376-48663395 None:intergenic 45.0%
AGCACTCCAAACTGAAGATG+TGG + Chr4:48667487-48667506 None:intergenic 45.0%
AGTGTTCGAAATCGGAATGG+TGG - Chr4:48665327-48665346 MsG0480020807.01.T01:CDS 45.0%
ATGTGTTGTGAACCTACCCA+TGG + Chr4:48666023-48666042 None:intergenic 45.0%
ATTTGTGTCCAGTGATGAGC+AGG - Chr4:48666339-48666358 MsG0480020807.01.T01:five_prime_UTR 45.0%
CAAACCAATCCTTATGGTGG+TGG - Chr4:48663364-48663383 MsG0480020807.01.T01:three_prime_UTR 45.0%
CAGTGATGAGCAGGTTCATA+TGG - Chr4:48666348-48666367 MsG0480020807.01.T01:five_prime_UTR 45.0%
CATATGAACCTGCTCATCAC+TGG + Chr4:48666350-48666369 None:intergenic 45.0%
CATTCCGATTTCGAACACTC+TGG + Chr4:48665326-48665345 None:intergenic 45.0%
CTATACCAGTATCCTTTGGC+GGG + Chr4:48664979-48664998 None:intergenic 45.0%
CTCAAAGAAAGCGGTTACCA+AGG + Chr4:48666429-48666448 None:intergenic 45.0%
CTCAGCTTGAAGACGTAAAC+GGG - Chr4:48665361-48665380 MsG0480020807.01.T01:CDS 45.0%
CTGCTTGTATCATCGGTAGA+GGG + Chr4:48666793-48666812 None:intergenic 45.0%
GAACATCACATGTTCCTCCT+AGG - Chr4:48664264-48664283 MsG0480020807.01.T01:intron 45.0%
GACACCGGCAGATATTGAAA+AGG - Chr4:48664530-48664549 MsG0480020807.01.T01:intron 45.0%
GCTCAGCTTGAAGACGTAAA+CGG - Chr4:48665360-48665379 MsG0480020807.01.T01:CDS 45.0%
GCTCCGACAAATAATTCTCC+TGG - Chr4:48664441-48664460 MsG0480020807.01.T01:intron 45.0%
GCTTCTCATGACAAAGCTAG+TGG - Chr4:48666921-48666940 MsG0480020807.01.T01:intron 45.0%
GTGGATCAGTCAAAGTCAGT+TGG - Chr4:48666102-48666121 MsG0480020807.01.T01:CDS 45.0%
TAGACCGTCTGATCCAGATA+TGG - Chr4:48665527-48665546 MsG0480020807.01.T01:CDS 45.0%
TATACCAGTATCCTTTGGCG+GGG + Chr4:48664978-48664997 None:intergenic 45.0%
TCCGTAATAGAGTGACAGGA+AGG + Chr4:48665302-48665321 None:intergenic 45.0%
TCCTTCTACTCCTCGAGTAA+AGG - Chr4:48664928-48664947 MsG0480020807.01.T01:intron 45.0%
TCCTTTACTCGAGGAGTAGA+AGG + Chr4:48664932-48664951 None:intergenic 45.0%
TCTACTCCTCGAGTAAAGGA+AGG - Chr4:48664932-48664951 MsG0480020807.01.T01:intron 45.0%
TGACATCATCAACCATGGGT+AGG - Chr4:48666008-48666027 MsG0480020807.01.T01:CDS 45.0%
TGCTGTCCTGCTTGTATCAT+CGG + Chr4:48666800-48666819 None:intergenic 45.0%
TGGATCCGTAATAGAGTGAC+AGG + Chr4:48665306-48665325 None:intergenic 45.0%
TTGAAGACGTAAACGGGTAC+AGG - Chr4:48665367-48665386 MsG0480020807.01.T01:CDS 45.0%
! CAGAGTGTTCGAAATCGGAA+TGG - Chr4:48665324-48665343 MsG0480020807.01.T01:CDS 45.0%
! CATGGTGGAAATGGAAGTGT+TGG - Chr4:48664708-48664727 MsG0480020807.01.T01:intron 45.0%
! CTGTAAAGGCGAACTTGCTT+TGG - Chr4:48665198-48665217 MsG0480020807.01.T01:intron 45.0%
! GAGTTTCAGGTATAGGACAC+CGG - Chr4:48664515-48664534 MsG0480020807.01.T01:intron 45.0%
! GGATCCAGAGTGTTCGAAAT+CGG - Chr4:48665319-48665338 MsG0480020807.01.T01:intron 45.0%
!! AGGATTGGTTTGAGTGTTGG+TGG + Chr4:48663356-48663375 None:intergenic 45.0%
!! GAGGAGTGTTTGTGCTTCAT+AGG - Chr4:48667223-48667242 MsG0480020807.01.T01:intron 45.0%
!! GTGGTGGAGTTTGCTTTTCT+GGG - Chr4:48663380-48663399 MsG0480020807.01.T01:three_prime_UTR 45.0%
!! TCAGTTTGGAGTGCTGCTTA+TGG - Chr4:48667492-48667511 MsG0480020807.01.T01:five_prime_UTR 45.0%
AACCACCAGAGCAAACTGGA+AGG + Chr4:48666384-48666403 None:intergenic 50.0%
AATGCCTGCCAACAACAGCA+AGG - Chr4:48664865-48664884 MsG0480020807.01.T01:intron 50.0%
ACTCTCTTGGGAGTAGGAGT+TGG + Chr4:48664390-48664409 None:intergenic 50.0%
ACTGTAACAACGCCACGTTC+AGG - Chr4:48666827-48666846 MsG0480020807.01.T01:intron 50.0%
AGAGAACCACCAGAGCAAAC+TGG + Chr4:48666388-48666407 None:intergenic 50.0%
ATGTGACACGTGTCTGACAC+CGG - Chr4:48667186-48667205 MsG0480020807.01.T01:intron 50.0%
CCTCTACCGATGATACAAGC+AGG - Chr4:48666791-48666810 MsG0480020807.01.T01:intron 50.0%
CCTGCTTGTATCATCGGTAG+AGG + Chr4:48666794-48666813 None:intergenic 50.0%
CCTGGATCTGCAACACCAAA+AGG - Chr4:48664459-48664478 MsG0480020807.01.T01:intron 50.0%
CTGATCAGACGATCCAGATG+TGG + Chr4:48665482-48665501 None:intergenic 50.0%
GAAGAGGAAACTTCCCGAGT+AGG + Chr4:48664564-48664583 None:intergenic 50.0%
GGAGAGCAGACCTAATACAC+AGG + Chr4:48665984-48666003 None:intergenic 50.0%
GTAGGAGTTGGAGTAGGACT+TGG + Chr4:48664378-48664397 None:intergenic 50.0%
TAGGGTTTGGCAGGAAGTTC+CGG - Chr4:48665698-48665717 MsG0480020807.01.T01:CDS 50.0%
TGCTTCGATTAGGAGCTTCG+TGG - Chr4:48665621-48665640 MsG0480020807.01.T01:intron 50.0%
TTGGGAGTAGGAGTTGGAGT+AGG + Chr4:48664384-48664403 None:intergenic 50.0%
! ATCCTTCCAGTTTGCTCTGG+TGG - Chr4:48666379-48666398 MsG0480020807.01.T01:five_prime_UTR 50.0%
! CTTTTCTCGAGTGCTCGAAG+AGG + Chr4:48664580-48664599 None:intergenic 50.0%
! TGCATCCTTCCAGTTTGCTC+TGG - Chr4:48666376-48666395 MsG0480020807.01.T01:five_prime_UTR 50.0%
! TGTGTGCCGTTAGCCATATC+TGG + Chr4:48665543-48665562 None:intergenic 50.0%
!! GGAGTAGGACTTGGTGTCAT+TGG + Chr4:48664369-48664388 None:intergenic 50.0%
!! GGTGGAAATGGAAGTGTTGG+CGG - Chr4:48664711-48664730 MsG0480020807.01.T01:intron 50.0%
!! GTTTGGAGTGCTGCTTATGG+AGG - Chr4:48667495-48667514 MsG0480020807.01.T01:five_prime_UTR 50.0%
!! TTGTCCTTGCTGTTGTTGGC+AGG + Chr4:48664872-48664891 None:intergenic 50.0%
!!! CCTTTTGGTGTTGCAGATCC+AGG + Chr4:48664462-48664481 None:intergenic 50.0%
!!! GGTGGTGGAGTTTGCTTTTC+TGG - Chr4:48663379-48663398 MsG0480020807.01.T01:three_prime_UTR 50.0%
AGGAGGCGAGACCTTCAAGT+TGG - Chr4:48665168-48665187 MsG0480020807.01.T01:CDS 55.0%
CGTGGCGTTGTTACAGTTCG+AGG + Chr4:48666824-48666843 None:intergenic 55.0%
CTACACACCGCCTCTTCTTC+AGG + Chr4:48665124-48665143 None:intergenic 55.0%
GGCGGTGTGTAGAATCTGTC+TGG - Chr4:48665132-48665151 MsG0480020807.01.T01:intron 55.0%
TGTGACACGTGTCTGACACC+GGG - Chr4:48667187-48667206 MsG0480020807.01.T01:intron 55.0%
! TCCTCGGATTAGACGTGTCC+CGG + Chr4:48667208-48667227 None:intergenic 55.0%
!! TGGTTGGATTGGCCTGAACG+TGG + Chr4:48666842-48666861 None:intergenic 55.0%
ACCGGGACACGTCTAATCCG+AGG - Chr4:48667204-48667223 MsG0480020807.01.T01:intron 60.0%
ACGTCCCCGCCAAAGGATAC+TGG - Chr4:48664971-48664990 MsG0480020807.01.T01:intron 60.0%
GTTGAAGACGTCCCCGCCAA+AGG - Chr4:48664964-48664983 MsG0480020807.01.T01:intron 60.0%
TGCACGCAGTCAGCCACATC+TGG - Chr4:48665466-48665485 MsG0480020807.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 48663075 48667590 48663075 ID=MsG0480020807.01;Name=MsG0480020807.01
Chr4 mRNA 48663075 48667590 48663075 ID=MsG0480020807.01.T01;Parent=MsG0480020807.01;Name=MsG0480020807.01.T01;_AED=0.22;_eAED=0.24;_QI=279|0.6|0.66|1|0.8|0.66|6|683|372
Chr4 exon 48663075 48664012 48663075 ID=MsG0480020807.01.T01:exon:7390;Parent=MsG0480020807.01.T01
Chr4 exon 48665152 48665205 48665152 ID=MsG0480020807.01.T01:exon:7389;Parent=MsG0480020807.01.T01
Chr4 exon 48665320 48665582 48665320 ID=MsG0480020807.01.T01:exon:7388;Parent=MsG0480020807.01.T01
Chr4 exon 48665673 48665838 48665673 ID=MsG0480020807.01.T01:exon:7387;Parent=MsG0480020807.01.T01
Chr4 exon 48665922 48666431 48665922 ID=MsG0480020807.01.T01:exon:7386;Parent=MsG0480020807.01.T01
Chr4 exon 48667441 48667590 48667441 ID=MsG0480020807.01.T01:exon:7385;Parent=MsG0480020807.01.T01
Chr4 five_prime_UTR 48667441 48667590 48667441 ID=MsG0480020807.01.T01:five_prime_utr;Parent=MsG0480020807.01.T01
Chr4 five_prime_UTR 48666303 48666431 48666303 ID=MsG0480020807.01.T01:five_prime_utr;Parent=MsG0480020807.01.T01
Chr4 CDS 48665922 48666302 48665922 ID=MsG0480020807.01.T01:cds;Parent=MsG0480020807.01.T01
Chr4 CDS 48665673 48665838 48665673 ID=MsG0480020807.01.T01:cds;Parent=MsG0480020807.01.T01
Chr4 CDS 48665320 48665582 48665320 ID=MsG0480020807.01.T01:cds;Parent=MsG0480020807.01.T01
Chr4 CDS 48665152 48665205 48665152 ID=MsG0480020807.01.T01:cds;Parent=MsG0480020807.01.T01
Chr4 CDS 48663758 48664012 48663758 ID=MsG0480020807.01.T01:cds;Parent=MsG0480020807.01.T01
Chr4 three_prime_UTR 48663075 48663757 48663075 ID=MsG0480020807.01.T01:three_prime_utr;Parent=MsG0480020807.01.T01
Gene Sequence

>MsG0480020807.01.T01

ATGCCAATGACACCAAGTCCTACTCCAACTCCTACTCCCAAGAGAGTGAATTTTCTTATGACTTCTCGTTCGGTTGATGCTCCGACAAATAATTCTCCTGGATCTGCAACACCAAAAGGCAAATCATCTATAAGAAAGATGCTGCCAAAATTGAGTTTCAGGTATAGGACACCGGCAGATATTGAAAAGGCGAATACACCTACTCGGGAAGTTTCCTCTTCGAGCACTCGAGAAAAGCCTTTAATATCAAGATCATTGTCACTTGGTAAAATATTTACTCCTAGGATGAAAAGAACTTCATCATTGCCATTAGGAGAAATTGGACATTCAAACCCTGAATCTACTCATGGTGGAAATGGAAGTGTTGGCGGTCCTCTCAGTAAAAAAGAGACTCGGCGAAAGATAGCGCGTTCTCTTTCAATGCCTGCCAACAACAGCAAGGACAAAAGTATAAGGAGGATGGATTCGTTTTTTCGTGTTGTTCCTTCTACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGAAGACGTCCCCGCCAAAGGATACTGAAATCGAAGATGATGATGATGATGATGGTGAAGATATACCTGAAGAAGAGGCGGTGTGTAGAATCTGTCTGGTTGAATTATGTGAAGGAGGCGAGACCTTCAAGTTGGAATGTAGCTGTAAAGGCGAACTTGCTTTGGCTCACAAAGAATGTGCTATTAAATGGTTTAGTATAAGGGAAACAAGACATGTGATGTCTGCAAAAAGGAGGTTACAAACCTTCCTGTCACTCTATTACGGATCCAGAGTGTTCGAAATCGGAATGTGTAACTGCACGCAGTCAGCCACATCTGGATCGTCTGATCAGACTTCAAGTTCGGTTCATGTGCAAGCTGTTCTGTCAATCCTTCTTGCAACATTTGCTGGTTTTGGTGTAGTAATGAGTGGAAGTTCTATGCTTGTTGAGTTCTTTAGATGGAGAAGGAGATGGCAAGCTTCATTAGAGCAACAACATGGCCCTCTACCGATGATACAAGCAGGACAGCAACCTCGAACTGTAACAACGCCACGTTCAGGCCAATCCAACCACAATCAATCTATAGTGCAAAATCAACAAGATTCAAATCAAAGCTGA
Protein sequence

>MsG0480020807.01.T01

MPMTPSPTPTPTPKRVNFLMTSRSVDAPTNNSPGSATPKGKSSIRKMLPKLSFRYRTPADIEKANTPTREVSSSSTREKPLISRSLSLGKIFTPRMKRTSSLPLGEIGHSNPESTHGGNGSVGGPLSKKETRRKIARSLSMPANNSKDKSIRRMDSFFRVVPSTPRVKEGNELLKTSPPKDTEIEDDDDDDGEDIPEEEAVCRICLVELCEGGETFKLECSCKGELALAHKECAIKWFSIRETRHVMSAKRRLQTFLSLYYGSRVFEIGMCNCTQSATSGSSDQTSSSVHVQAVLSILLATFAGFGVVMSGSSMLVEFFRWRRRWQASLEQQHGPLPMIQAGQQPRTVTTPRSGQSNHNQSIVQNQQDSNQS*