Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002623.01.T01 | THU66262.1 | 79.832 | 119 | 14 | 2 | 65 | 173 | 24 | 142 | 3.11E-57 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002623.01.T01 | A2XHJ3 | 83.486 | 109 | 4 | 1 | 65 | 173 | 42 | 136 | 8.40E-59 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002623.01.T01 | A0A4S8JVK6 | 79.832 | 119 | 14 | 2 | 65 | 173 | 24 | 142 | 1.48e-57 | 186 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000470.01 | MsG0180002623.01 | 0.824241 | 8.978950e-54 | 7.908275e-51 |
| MsG0180000585.01 | MsG0180002623.01 | 0.800756 | 1.241079e-48 | 5.825486e-46 |
| MsG0180002623.01 | MsG0180003669.01 | 0.851340 | 9.460670e-61 | 1.908998e-57 |
| MsG0180002623.01 | MsG0180005050.01 | 0.808472 | 3.045967e-50 | 1.743207e-47 |
| MsG0180002623.01 | MsG0180005842.01 | 0.811337 | 7.363032e-51 | 4.545369e-48 |
| MsG0180002623.01 | MsG0280006375.01 | 0.828370 | 9.336130e-55 | 9.261386e-52 |
| MsG0180002623.01 | MsG0280006976.01 | 0.802687 | 4.984133e-49 | 2.457004e-46 |
| MsG0180002623.01 | MsG0280007564.01 | 0.803462 | 3.446704e-49 | 1.733100e-46 |
| MsG0180002623.01 | MsG0280008249.01 | 0.869185 | 3.741051e-66 | 1.391308e-62 |
| MsG0180002623.01 | MsG0280009868.01 | 0.800473 | 1.417429e-48 | 6.605735e-46 |
| MsG0180002623.01 | MsG0280010443.01 | 0.808731 | 2.681047e-50 | 1.544662e-47 |
| MsG0180002623.01 | MsG0280010614.01 | 0.806772 | 6.994617e-50 | 3.829026e-47 |
| MsG0180002623.01 | MsG0280010698.01 | 0.804313 | 2.293525e-49 | 1.178751e-46 |
| MsG0180002623.01 | MsG0280011472.01 | 0.805037 | 1.619372e-49 | 8.479488e-47 |
| MsG0180002623.01 | MsG0380012330.01 | 0.827676 | 1.371575e-54 | 1.333286e-51 |
| MsG0180002623.01 | MsG0380012403.01 | 0.802671 | 5.023397e-49 | 2.475306e-46 |
| MsG0180002623.01 | MsG0380012460.01 | 0.802353 | 5.839737e-49 | 2.854537e-46 |
| MsG0180002623.01 | MsG0380013834.01 | 0.803881 | 2.820790e-49 | 1.433805e-46 |
| MsG0180002623.01 | MsG0380014573.01 | 0.822129 | 2.793499e-53 | 2.317651e-50 |
| MsG0180002623.01 | MsG0380014703.01 | 0.800687 | 1.282513e-48 | 6.009407e-46 |
| MsG0180002623.01 | MsG0380016553.01 | 0.804940 | 1.697266e-49 | 8.865806e-47 |
| MsG0180002623.01 | MsG0380016859.01 | 0.820568 | 6.404667e-53 | 5.085709e-50 |
| MsG0180002623.01 | MsG0380017040.01 | 0.808935 | 2.424764e-50 | 1.404595e-47 |
| MsG0180002623.01 | MsG0480018576.01 | 0.808682 | 2.746707e-50 | 1.580467e-47 |
| MsG0180002623.01 | MsG0480018640.01 | 0.802491 | 5.471531e-49 | 2.683756e-46 |
| MsG0180002623.01 | MsG0480018970.01 | 0.808380 | 3.187282e-50 | 1.819696e-47 |
| MsG0180002623.01 | MsG0480019970.01 | 0.803254 | 3.805842e-49 | 1.903499e-46 |
| MsG0180002623.01 | MsG0480020807.01 | 0.835434 | 1.681597e-56 | 2.056100e-53 |
| MsG0180002623.01 | MsG0480021409.01 | 0.802816 | 4.688907e-49 | 2.319185e-46 |
| MsG0180002623.01 | MsG0480022480.01 | 0.802717 | 4.913058e-49 | 2.423914e-46 |
| MsG0180002623.01 | MsG0480022551.01 | 0.819535 | 1.103754e-52 | 8.517021e-50 |
| MsG0180002623.01 | MsG0580024682.01 | 0.806688 | 7.283208e-50 | 3.978409e-47 |
| MsG0180002623.01 | MsG0580024781.01 | 0.805424 | 1.343946e-49 | 7.107517e-47 |
| MsG0180002623.01 | MsG0580025638.01 | 0.800392 | 1.472326e-48 | 6.847647e-46 |
| MsG0180002623.01 | MsG0580025758.01 | 0.805154 | 1.530520e-49 | 8.038561e-47 |
| MsG0180002623.01 | MsG0580025807.01 | 0.827129 | 1.855547e-54 | 1.775180e-51 |
| MsG0180002623.01 | MsG0580026023.01 | 0.806917 | 6.515292e-50 | 3.580155e-47 |
| MsG0180002623.01 | MsG0580027833.01 | 0.803953 | 2.724851e-49 | 1.387635e-46 |
| MsG0180002623.01 | MsG0580028990.01 | 0.802494 | 5.462955e-49 | 2.679765e-46 |
| MsG0180002623.01 | MsG0580029189.01 | 0.817759 | 2.791850e-52 | 2.051177e-49 |
| MsG0180002623.01 | MsG0580029541.01 | 0.811547 | 6.627875e-51 | 4.114577e-48 |
| MsG0180002623.01 | MsG0580029762.01 | 0.807739 | 4.363297e-50 | 2.449432e-47 |
| MsG0180002623.01 | MsG0680031061.01 | 0.801318 | 9.527513e-49 | 4.536262e-46 |
| MsG0180002623.01 | MsG0680031262.01 | 0.800263 | 1.564640e-48 | 7.253077e-46 |
| MsG0180002623.01 | MsG0680035573.01 | 0.824266 | 8.860928e-54 | 7.809629e-51 |
| MsG0180002623.01 | MsG0780037515.01 | 0.804026 | 2.632350e-49 | 1.342979e-46 |
| MsG0180002623.01 | MsG0780037919.01 | 0.807981 | 3.876181e-50 | 2.189732e-47 |
| MsG0180002623.01 | MsG0780038401.01 | 0.817458 | 3.263409e-52 | 2.378018e-49 |
| MsG0180002623.01 | MsG0880044574.01 | 0.812228 | 4.712047e-51 | 2.979225e-48 |
| MsG0180002623.01 | MsG0880045372.01 | 0.812832 | 3.476209e-51 | 2.233100e-48 |
| MsG0180002623.01 | MsG0880045736.01 | 0.810668 | 1.027851e-50 | 6.234090e-48 |
| MsG0180002623.01 | MsG0880045937.01 | 0.810850 | 9.390734e-51 | 5.723363e-48 |
| MsG0180002623.01 | MsG0880046020.01 | 0.816687 | 4.862701e-52 | 3.469088e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002623.01.T01 | MTR_4g097175 | 83.486 | 109 | 4 | 1 | 65 | 173 | 42 | 136 | 8.18e-60 | 182 |
| MsG0180002623.01.T01 | MTR_1g023630 | 83.486 | 109 | 4 | 1 | 65 | 173 | 42 | 136 | 8.18e-60 | 182 |
| MsG0180002623.01.T01 | MTR_8g061940 | 83.486 | 109 | 4 | 1 | 65 | 173 | 42 | 136 | 8.18e-60 | 182 |
| MsG0180002623.01.T01 | MTR_8g099430 | 82.569 | 109 | 5 | 1 | 65 | 173 | 42 | 136 | 3.28e-59 | 181 |
| MsG0180002623.01.T01 | MTR_4g097170 | 83.486 | 109 | 4 | 1 | 65 | 173 | 83 | 177 | 6.10e-59 | 182 |
| MsG0180002623.01.T01 | MTR_2g082370 | 81.651 | 109 | 6 | 1 | 65 | 173 | 52 | 146 | 1.97e-57 | 177 |
| MsG0180002623.01.T01 | MTR_7g059070 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 3.95e-57 | 176 |
| MsG0180002623.01.T01 | MTR_5g029820 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 3.95e-57 | 176 |
| MsG0180002623.01.T01 | MTR_5g029770 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 3.95e-57 | 176 |
| MsG0180002623.01.T01 | MTR_4g065990 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 3.95e-57 | 176 |
| MsG0180002623.01.T01 | MTR_4g088150 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 3.95e-57 | 176 |
| MsG0180002623.01.T01 | MTR_2g035230 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 3.95e-57 | 176 |
| MsG0180002623.01.T01 | MTR_8g092720 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 3.95e-57 | 176 |
| MsG0180002623.01.T01 | MTR_8g063500 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 3.95e-57 | 176 |
| MsG0180002623.01.T01 | MTR_8g103245 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 3.95e-57 | 176 |
| MsG0180002623.01.T01 | MTR_8g092820 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 3.95e-57 | 176 |
| MsG0180002623.01.T01 | MTR_2g082310 | 77.982 | 109 | 10 | 1 | 65 | 173 | 42 | 136 | 1.01e-55 | 172 |
| MsG0180002623.01.T01 | MTR_2g082340 | 77.982 | 109 | 10 | 1 | 65 | 173 | 42 | 136 | 1.01e-55 | 172 |
| MsG0180002623.01.T01 | MTR_7g013610 | 80.734 | 109 | 7 | 1 | 65 | 173 | 141 | 235 | 1.24e-55 | 175 |
| MsG0180002623.01.T01 | MTR_2g082400 | 75.229 | 109 | 12 | 2 | 65 | 172 | 41 | 135 | 2.39e-50 | 159 |
| MsG0180002623.01.T01 | MTR_7g013600 | 69.725 | 109 | 19 | 1 | 65 | 173 | 19 | 113 | 1.13e-45 | 146 |
| MsG0180002623.01.T01 | MTR_7g023830 | 53.333 | 135 | 45 | 2 | 37 | 171 | 17 | 133 | 1.55e-41 | 136 |
| MsG0180002623.01.T01 | MTR_7g023880 | 68.235 | 85 | 26 | 1 | 88 | 171 | 53 | 137 | 2.18e-36 | 123 |
| MsG0180002623.01.T01 | MTR_8g027840 | 47.170 | 106 | 41 | 2 | 66 | 170 | 34 | 125 | 3.67e-24 | 92.0 |
| MsG0180002623.01.T01 | MTR_1g029470 | 81.818 | 55 | 10 | 0 | 1 | 55 | 1 | 55 | 2.17e-23 | 95.1 |
| MsG0180002623.01.T01 | MTR_1g029460 | 89.796 | 49 | 5 | 0 | 1 | 49 | 1 | 49 | 7.21e-23 | 94.0 |
| MsG0180002623.01.T01 | MTR_8g105150 | 92.857 | 42 | 2 | 1 | 124 | 164 | 28 | 69 | 2.07e-20 | 80.5 |
| MsG0180002623.01.T01 | MTR_5g024530 | 64.516 | 62 | 22 | 0 | 104 | 165 | 93 | 154 | 3.08e-19 | 80.1 |
| MsG0180002623.01.T01 | MTR_8g092740 | 89.744 | 39 | 4 | 0 | 135 | 173 | 117 | 155 | 5.61e-19 | 79.3 |
| MsG0180002623.01.T01 | MTR_1g023630 | 51.190 | 84 | 25 | 2 | 65 | 148 | 42 | 109 | 4.88e-17 | 72.8 |
| MsG0180002623.01.T01 | MTR_5g089120 | 63.265 | 49 | 18 | 0 | 119 | 167 | 6 | 54 | 1.06e-15 | 68.9 |
| MsG0180002623.01.T01 | MTR_5g024630 | 53.030 | 66 | 29 | 1 | 88 | 153 | 50 | 113 | 4.61e-15 | 67.8 |
| MsG0180002623.01.T01 | MTR_5g004570 | 54.839 | 62 | 28 | 0 | 1 | 62 | 1 | 62 | 2.53e-14 | 68.9 |
| MsG0180002623.01.T01 | MTR_4g128040 | 58.824 | 51 | 20 | 1 | 103 | 152 | 6 | 56 | 9.20e-13 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002623.01.T01 | AT5G10980 | 83.486 | 109 | 4 | 1 | 65 | 173 | 42 | 136 | 8.56e-60 | 182 |
| MsG0180002623.01.T01 | AT4G40040 | 83.486 | 109 | 4 | 1 | 65 | 173 | 42 | 136 | 8.56e-60 | 182 |
| MsG0180002623.01.T01 | AT4G40040 | 83.486 | 109 | 4 | 1 | 65 | 173 | 42 | 136 | 8.56e-60 | 182 |
| MsG0180002623.01.T01 | AT4G40040 | 83.486 | 109 | 4 | 1 | 65 | 173 | 42 | 136 | 8.56e-60 | 182 |
| MsG0180002623.01.T01 | AT4G40030 | 83.486 | 109 | 4 | 1 | 65 | 173 | 42 | 136 | 8.56e-60 | 182 |
| MsG0180002623.01.T01 | AT4G40030 | 83.486 | 109 | 4 | 1 | 65 | 173 | 42 | 136 | 8.56e-60 | 182 |
| MsG0180002623.01.T01 | AT4G40030 | 83.486 | 109 | 4 | 1 | 65 | 173 | 42 | 136 | 8.56e-60 | 182 |
| MsG0180002623.01.T01 | AT4G40030 | 83.486 | 109 | 4 | 1 | 65 | 173 | 70 | 164 | 3.22e-59 | 182 |
| MsG0180002623.01.T01 | AT1G75600 | 81.651 | 109 | 6 | 1 | 65 | 173 | 42 | 136 | 8.52e-59 | 180 |
| MsG0180002623.01.T01 | AT5G65360 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 2.85e-57 | 176 |
| MsG0180002623.01.T01 | AT5G10390 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 2.85e-57 | 176 |
| MsG0180002623.01.T01 | AT5G10400 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 2.85e-57 | 176 |
| MsG0180002623.01.T01 | AT3G27360 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 2.85e-57 | 176 |
| MsG0180002623.01.T01 | AT1G09200 | 80.734 | 109 | 7 | 1 | 65 | 173 | 42 | 136 | 2.85e-57 | 176 |
| MsG0180002623.01.T01 | AT1G13370 | 79.817 | 109 | 8 | 1 | 65 | 173 | 42 | 136 | 1.06e-56 | 175 |
| MsG0180002623.01.T01 | AT1G19890 | 79.817 | 109 | 8 | 1 | 65 | 173 | 43 | 137 | 2.96e-56 | 174 |
| MsG0180002623.01.T01 | AT5G65350 | 67.153 | 137 | 27 | 2 | 37 | 173 | 18 | 136 | 1.61e-55 | 172 |
| MsG0180002623.01.T01 | AT5G12910 | 67.593 | 108 | 21 | 1 | 65 | 172 | 37 | 130 | 1.21e-47 | 151 |
| MsG0180002623.01.T01 | AT1G01370 | 48.624 | 109 | 40 | 2 | 65 | 171 | 80 | 174 | 2.55e-23 | 91.3 |
| MsG0180002623.01.T01 | AT1G01370 | 48.624 | 109 | 40 | 2 | 65 | 171 | 80 | 174 | 2.55e-23 | 91.3 |
| MsG0180002623.01.T01 | AT1G01370 | 48.624 | 109 | 40 | 2 | 65 | 171 | 80 | 174 | 2.55e-23 | 91.3 |
| MsG0180002623.01.T01 | AT1G01370 | 48.624 | 109 | 40 | 2 | 65 | 171 | 80 | 174 | 2.55e-23 | 91.3 |
| MsG0180002623.01.T01 | AT1G76700 | 60.000 | 55 | 22 | 0 | 1 | 55 | 1 | 55 | 2.11e-15 | 73.2 |
| MsG0180002623.01.T01 | AT1G21080 | 58.182 | 55 | 23 | 0 | 1 | 55 | 1 | 55 | 5.35e-15 | 72.0 |
| MsG0180002623.01.T01 | AT1G21080 | 58.182 | 55 | 23 | 0 | 1 | 55 | 1 | 55 | 6.04e-15 | 71.6 |
| MsG0180002623.01.T01 | AT1G77020 | 61.818 | 55 | 21 | 0 | 1 | 55 | 1 | 55 | 1.28e-14 | 70.9 |
| MsG0180002623.01.T01 | AT2G21510 | 56.364 | 55 | 24 | 0 | 1 | 55 | 1 | 55 | 3.06e-13 | 66.6 |
| MsG0180002623.01.T01 | AT2G21510 | 56.364 | 55 | 24 | 0 | 1 | 55 | 1 | 55 | 3.52e-13 | 66.6 |
| MsG0180002623.01.T01 | AT2G21510 | 56.364 | 55 | 24 | 0 | 1 | 55 | 1 | 55 | 3.52e-13 | 66.6 |
| MsG0180002623.01.T01 | AT2G21510 | 56.364 | 55 | 24 | 0 | 1 | 55 | 1 | 55 | 3.61e-13 | 66.6 |
| MsG0180002623.01.T01 | AT2G21510 | 56.364 | 55 | 24 | 0 | 1 | 55 | 1 | 55 | 3.61e-13 | 66.6 |
| MsG0180002623.01.T01 | AT4G39150 | 54.545 | 55 | 25 | 0 | 1 | 55 | 1 | 55 | 5.00e-12 | 63.2 |
| MsG0180002623.01.T01 | AT4G39150 | 54.545 | 55 | 25 | 0 | 1 | 55 | 1 | 55 | 5.00e-12 | 63.2 |
| MsG0180002623.01.T01 | AT4G39150 | 54.545 | 55 | 25 | 0 | 1 | 55 | 1 | 55 | 5.00e-12 | 63.2 |
Find 37 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATGGCGGATTAGTATTT+TGG | 0.183704 | 1:-41853357 | MsG0180002623.01.T01:three_prime_UTR |
| CCATGCAGTTCTTGCACTTC+AGG | 0.275497 | 1:-41853529 | MsG0180002623.01.T01:CDS |
| TACCGAAGTGCAACGGTTGC+AGG | 0.285394 | 1:+41853903 | None:intergenic |
| GTGCAGCATTAGGATCATTT+TGG | 0.296107 | 1:+41853988 | None:intergenic |
| TGAAATTTGTGTGCAGCATT+AGG | 0.307048 | 1:+41853978 | None:intergenic |
| CCTTCGCGGTGAACGTGCTT+AGG | 0.332251 | 1:-41853400 | MsG0180002623.01.T01:exon |
| TCAAAAGCTCAGTACTCTTC+TGG | 0.362715 | 1:+41853726 | None:intergenic |
| AGCTTTGCGAATTTGATTAT+CGG | 0.381909 | 1:+41854147 | None:intergenic |
| GTGCAAGAACTGCATGGCTC+TGG | 0.421979 | 1:+41853535 | None:intergenic |
| CAGTTTGCTCGTCGCCTTCG+CGG | 0.426096 | 1:-41853414 | MsG0180002623.01.T01:CDS |
| TTACCTGGTTGGATTGTTTG+AGG | 0.445449 | 1:-41853493 | MsG0180002623.01.T01:CDS |
| GGAAGCAGCTGAGGCTTACC+TGG | 0.448380 | 1:-41853508 | MsG0180002623.01.T01:CDS |
| TCACGGACAAGACGCTGAAA+TGG | 0.451915 | 1:+41853692 | None:intergenic |
| CGAGCAAACTGAATGTCCTT+TGG | 0.459254 | 1:+41853426 | None:intergenic |
| TGAAATCTTGAGCAATTTCA+CGG | 0.459574 | 1:+41853675 | None:intergenic |
| TGAAATTGCTCAAGATTTCA+AGG | 0.466768 | 1:-41853672 | MsG0180002623.01.T01:intron |
| ATAGCAGTTACTCCTACTAC+TGG | 0.475822 | 1:-41853953 | MsG0180002623.01.T01:CDS |
| CTTCGCGGTGAACGTGCTTA+GGG | 0.476687 | 1:-41853399 | MsG0180002623.01.T01:exon |
| CAGTACTCTTCTGGTACTTA+CGG | 0.482178 | 1:+41853735 | None:intergenic |
| TGCACTTCAGGAAGCAGCTG+AGG | 0.513447 | 1:-41853517 | MsG0180002623.01.T01:CDS |
| GCAACGGTTGCAGGACGATA+CGG | 0.518775 | 1:+41853912 | None:intergenic |
| GCAGCTGAGGCTTACCTGGT+TGG | 0.521313 | 1:-41853504 | MsG0180002623.01.T01:CDS |
| CGCGGTGAACGTGCTTAGGG+TGG | 0.576180 | 1:-41853396 | MsG0180002623.01.T01:exon |
| TCGCAAAGCTTGTTATCACA+AGG | 0.578010 | 1:-41854134 | MsG0180002623.01.T01:intron |
| AAGCAGAAGAAGATACTTCG+AGG | 0.583997 | 1:+41854170 | None:intergenic |
| GTCCTGCAACCGTTGCACTT+CGG | 0.588718 | 1:-41853905 | MsG0180002623.01.T01:intron |
| CCTGAAGTGCAAGAACTGCA+TGG | 0.601251 | 1:+41853529 | None:intergenic |
| ACGAAATTACCGAAGTGCAA+CGG | 0.605114 | 1:+41853896 | None:intergenic |
| CCTAAGCACGTTCACCGCGA+AGG | 0.618575 | 1:+41853400 | None:intergenic |
| GAACGTGCTTAGGGTGGTGA+AGG | 0.623913 | 1:-41853390 | MsG0180002623.01.T01:exon |
| GGTTGCAGGACGATACGGTA+AGG | 0.624479 | 1:+41853917 | None:intergenic |
| GTGTGCAATTCATGCTAAGA+GGG | 0.629194 | 1:-41853460 | MsG0180002623.01.T01:CDS |
| GAGGGTGACAATTATGCCAA+AGG | 0.629580 | 1:-41853442 | MsG0180002623.01.T01:CDS |
| GCAGTTACTCCTACTACTGG+AGG | 0.642966 | 1:-41853950 | MsG0180002623.01.T01:CDS |
| TGTGTGCAATTCATGCTAAG+AGG | 0.646985 | 1:-41853461 | MsG0180002623.01.T01:CDS |
| GACGCTGAAATGGAAGCTTG+CGG | 0.649029 | 1:+41853702 | None:intergenic |
| TGTCCTCAAACAATCCAACC+AGG | 0.680035 | 1:+41853490 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTAAAAATTGAACATTAT+AGG | + | Chr1:41854107-41854126 | None:intergenic | 15.0% |
| !! | ACAAATTAAATAAACCAAAG+AGG | + | Chr1:41853785-41853804 | None:intergenic | 20.0% |
| !!! | AAGTTTGTACTAGATTTTAT+TGG | - | Chr1:41854166-41854185 | MsG0180002623.01.T01:CDS | 20.0% |
| !!! | AGAGTTTTGAATTTGAATTT+TGG | - | Chr1:41853531-41853550 | MsG0180002623.01.T01:CDS | 20.0% |
| !!! | AGTTTGTACTAGATTTTATT+GGG | - | Chr1:41854167-41854186 | MsG0180002623.01.T01:CDS | 20.0% |
| !!! | TTTGATATTGTTGTTATAGA+CGG | - | Chr1:41853815-41853834 | MsG0180002623.01.T01:intron | 20.0% |
| !!! | TTTTGGATTCATACTTTTTT+AGG | - | Chr1:41853548-41853567 | MsG0180002623.01.T01:CDS | 20.0% |
| !!! | TTTTTAGGAATTTGAATTTG+CGG | - | Chr1:41853563-41853582 | MsG0180002623.01.T01:intron | 20.0% |
| ! | TCATACTTTCTTATTGTTAC+AGG | - | Chr1:41853347-41853366 | MsG0180002623.01.T01:three_prime_UTR | 25.0% |
| !! | AACTCTGAAAACCTAAAAAT+AGG | + | Chr1:41853517-41853536 | None:intergenic | 25.0% |
| !! | ACTCTGAAAACCTAAAAATA+GGG | + | Chr1:41853516-41853535 | None:intergenic | 25.0% |
| !!! | ATTTCGTTTTCCCTATTTTT+AGG | - | Chr1:41853503-41853522 | MsG0180002623.01.T01:CDS | 25.0% |
| !!! | TAGTATTTTGGAAGGATTTA+GGG | - | Chr1:41854038-41854057 | MsG0180002623.01.T01:intron | 25.0% |
| !!! | TTAGTATTTTGGAAGGATTT+AGG | - | Chr1:41854037-41854056 | MsG0180002623.01.T01:intron | 25.0% |
| !!! | TTTTAGGAATTTGAATTTGC+GGG | - | Chr1:41853564-41853583 | MsG0180002623.01.T01:intron | 25.0% |
| AGCTTTGCGAATTTGATTAT+CGG | + | Chr1:41853239-41853258 | None:intergenic | 30.0% | |
| TGAAATCTTGAGCAATTTCA+CGG | + | Chr1:41853711-41853730 | None:intergenic | 30.0% | |
| TGAAATTGCTCAAGATTTCA+AGG | - | Chr1:41853711-41853730 | MsG0180002623.01.T01:CDS | 30.0% | |
| !!! | GGATCATTTTGGTTTCTATA+AGG | + | Chr1:41853387-41853406 | None:intergenic | 30.0% |
| TGAAATTTGTGTGCAGCATT+AGG | + | Chr1:41853408-41853427 | None:intergenic | 35.0% | |
| TGTGAAATCTTGTTCCTCTT+TGG | - | Chr1:41853768-41853787 | MsG0180002623.01.T01:CDS | 35.0% | |
| ! | ATTTGCGGGTTATGATTGTT+AGG | - | Chr1:41853578-41853597 | MsG0180002623.01.T01:intron | 35.0% |
| !!! | GTTATGGCGGATTAGTATTT+TGG | - | Chr1:41854026-41854045 | MsG0180002623.01.T01:intron | 35.0% |
| AAGCAGAAGAAGATACTTCG+AGG | + | Chr1:41853216-41853235 | None:intergenic | 40.0% | |
| ACGAAATTACCGAAGTGCAA+CGG | + | Chr1:41853490-41853509 | None:intergenic | 40.0% | |
| ATAGCAGTTACTCCTACTAC+TGG | - | Chr1:41853430-41853449 | MsG0180002623.01.T01:CDS | 40.0% | |
| CAGTACTCTTCTGGTACTTA+CGG | + | Chr1:41853651-41853670 | None:intergenic | 40.0% | |
| GTGTGCAATTCATGCTAAGA+GGG | - | Chr1:41853923-41853942 | MsG0180002623.01.T01:CDS | 40.0% | |
| TCAAAAGCTCAGTACTCTTC+TGG | + | Chr1:41853660-41853679 | None:intergenic | 40.0% | |
| TGTGTGCAATTCATGCTAAG+AGG | - | Chr1:41853922-41853941 | MsG0180002623.01.T01:CDS | 40.0% | |
| TTACCTGGTTGGATTGTTTG+AGG | - | Chr1:41853890-41853909 | MsG0180002623.01.T01:intron | 40.0% | |
| ! | GTGCAGCATTAGGATCATTT+TGG | + | Chr1:41853398-41853417 | None:intergenic | 40.0% |
| !! | TCGCAAAGCTTGTTATCACA+AGG | - | Chr1:41853249-41853268 | MsG0180002623.01.T01:three_prime_UTR | 40.0% |
| !! | TTTTTGACTCCTCCAGTAGT+AGG | + | Chr1:41853445-41853464 | None:intergenic | 40.0% |
| !!! | TGAAGGTGCTTTTAGGGTTA+TGG | - | Chr1:41854010-41854029 | MsG0180002623.01.T01:CDS | 40.0% |
| !!! | TGGCGGATTAGTATTTTGGA+AGG | - | Chr1:41854030-41854049 | MsG0180002623.01.T01:intron | 40.0% |
| CGAGCAAACTGAATGTCCTT+TGG | + | Chr1:41853960-41853979 | None:intergenic | 45.0% | |
| GAGGGTGACAATTATGCCAA+AGG | - | Chr1:41853941-41853960 | MsG0180002623.01.T01:CDS | 45.0% | |
| TGTCCTCAAACAATCCAACC+AGG | + | Chr1:41853896-41853915 | None:intergenic | 45.0% | |
| !!! | AGGTGCTTTTAGGGTTATGG+CGG | - | Chr1:41854013-41854032 | MsG0180002623.01.T01:CDS | 45.0% |
| CCATGCAGTTCTTGCACTTC+AGG | - | Chr1:41853854-41853873 | MsG0180002623.01.T01:intron | 50.0% | |
| CCTGAAGTGCAAGAACTGCA+TGG | + | Chr1:41853857-41853876 | None:intergenic | 50.0% | |
| GACGCTGAAATGGAAGCTTG+CGG | + | Chr1:41853684-41853703 | None:intergenic | 50.0% | |
| GCAGTTACTCCTACTACTGG+AGG | - | Chr1:41853433-41853452 | MsG0180002623.01.T01:CDS | 50.0% | |
| TCACGGACAAGACGCTGAAA+TGG | + | Chr1:41853694-41853713 | None:intergenic | 50.0% | |
| !!! | AGGGTGGTGAAGGTGCTTTT+AGG | - | Chr1:41854003-41854022 | MsG0180002623.01.T01:CDS | 50.0% |
| !!! | GGGTGGTGAAGGTGCTTTTA+GGG | - | Chr1:41854004-41854023 | MsG0180002623.01.T01:CDS | 50.0% |
| CTTCGCGGTGAACGTGCTTA+GGG | - | Chr1:41853984-41854003 | MsG0180002623.01.T01:CDS | 55.0% | |
| GAACGTGCTTAGGGTGGTGA+AGG | - | Chr1:41853993-41854012 | MsG0180002623.01.T01:CDS | 55.0% | |
| GCAACGGTTGCAGGACGATA+CGG | + | Chr1:41853474-41853493 | None:intergenic | 55.0% | |
| GGTTGCAGGACGATACGGTA+AGG | + | Chr1:41853469-41853488 | None:intergenic | 55.0% | |
| GTCCTGCAACCGTTGCACTT+CGG | - | Chr1:41853478-41853497 | MsG0180002623.01.T01:CDS | 55.0% | |
| GTGCAAGAACTGCATGGCTC+TGG | + | Chr1:41853851-41853870 | None:intergenic | 55.0% | |
| TACCGAAGTGCAACGGTTGC+AGG | + | Chr1:41853483-41853502 | None:intergenic | 55.0% | |
| TGCACTTCAGGAAGCAGCTG+AGG | - | Chr1:41853866-41853885 | MsG0180002623.01.T01:intron | 55.0% | |
| CCTAAGCACGTTCACCGCGA+AGG | + | Chr1:41853986-41854005 | None:intergenic | 60.0% | |
| CCTTCGCGGTGAACGTGCTT+AGG | - | Chr1:41853983-41854002 | MsG0180002623.01.T01:CDS | 60.0% | |
| GCAGCTGAGGCTTACCTGGT+TGG | - | Chr1:41853879-41853898 | MsG0180002623.01.T01:intron | 60.0% | |
| GGAAGCAGCTGAGGCTTACC+TGG | - | Chr1:41853875-41853894 | MsG0180002623.01.T01:intron | 60.0% | |
| ! | CAGTTTGCTCGTCGCCTTCG+CGG | - | Chr1:41853969-41853988 | MsG0180002623.01.T01:CDS | 60.0% |
| CGCGGTGAACGTGCTTAGGG+TGG | - | Chr1:41853987-41854006 | MsG0180002623.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 41853184 | 41854221 | 41853184 | ID=MsG0180002623.01;Name=MsG0180002623.01 |
| Chr1 | mRNA | 41853184 | 41854221 | 41853184 | ID=MsG0180002623.01.T01;Parent=MsG0180002623.01;Name=MsG0180002623.01.T01;_AED=0.18;_eAED=0.32;_QI=0|0.33|0.25|0.75|1|0.75|4|217|173 |
| Chr1 | exon | 41853184 | 41853571 | 41853184 | ID=MsG0180002623.01.T01:exon:21490;Parent=MsG0180002623.01.T01 |
| Chr1 | exon | 41853673 | 41853805 | 41853673 | ID=MsG0180002623.01.T01:exon:21489;Parent=MsG0180002623.01.T01 |
| Chr1 | exon | 41853906 | 41854036 | 41853906 | ID=MsG0180002623.01.T01:exon:21488;Parent=MsG0180002623.01.T01 |
| Chr1 | exon | 41854135 | 41854221 | 41854135 | ID=MsG0180002623.01.T01:exon:21487;Parent=MsG0180002623.01.T01 |
| Chr1 | CDS | 41854135 | 41854221 | 41854135 | ID=MsG0180002623.01.T01:cds;Parent=MsG0180002623.01.T01 |
| Chr1 | CDS | 41853906 | 41854036 | 41853906 | ID=MsG0180002623.01.T01:cds;Parent=MsG0180002623.01.T01 |
| Chr1 | CDS | 41853673 | 41853805 | 41853673 | ID=MsG0180002623.01.T01:cds;Parent=MsG0180002623.01.T01 |
| Chr1 | CDS | 41853401 | 41853571 | 41853401 | ID=MsG0180002623.01.T01:cds;Parent=MsG0180002623.01.T01 |
| Chr1 | three_prime_UTR | 41853184 | 41853400 | 41853184 | ID=MsG0180002623.01.T01:three_prime_utr;Parent=MsG0180002623.01.T01 |
| Gene Sequence |
| Protein sequence |
