AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037515.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037515.01.T01 MTR_7g033720 79.565 460 31 2 1 397 1 460 0.0 677
MsG0780037515.01.T01 MTR_7g033720 68.916 415 89 5 1 397 1 393 3.77e-169 479
MsG0780037515.01.T01 MTR_2g021030 28.213 319 180 13 73 384 139 415 2.84e-15 77.4
MsG0780037515.01.T01 MTR_2g021030 28.213 319 180 13 73 384 139 415 5.50e-15 77.0
MsG0780037515.01.T01 MTR_2g021030 25.725 276 192 8 119 390 335 601 6.06e-13 70.9
MsG0780037515.01.T01 MTR_4g013255 24.555 281 199 9 107 384 310 580 1.43e-12 69.7
MsG0780037515.01.T02 MTR_7g033720 91.435 467 33 2 1 467 1 460 0.0 790
MsG0780037515.01.T02 MTR_7g033720 93.004 243 17 0 225 467 151 393 8.83e-160 457
MsG0780037515.01.T02 MTR_7g033720 87.975 158 12 2 1 158 1 151 3.95e-63 210
MsG0780037515.01.T02 MTR_2g021030 27.056 462 276 17 1 454 7 415 3.17e-19 90.5
MsG0780037515.01.T02 MTR_2g021030 27.056 462 276 17 1 454 7 415 6.77e-19 90.1
MsG0780037515.01.T02 MTR_2g021030 25.725 276 192 8 189 460 335 601 1.24e-12 70.5
MsG0780037515.01.T02 MTR_4g013255 24.555 281 199 9 177 454 310 580 9.29e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037515.01.T01 AT5G40470 47.447 333 168 4 67 397 163 490 7.74e-87 272
MsG0780037515.01.T01 AT4G15475 25.758 264 163 6 120 382 362 593 4.66e-14 74.3
MsG0780037515.01.T01 AT4G15475 24.839 310 209 8 73 375 139 431 9.68e-12 67.0
MsG0780037515.01.T02 AT5G40470 46.278 497 230 11 1 467 1 490 9.36e-103 316
MsG0780037515.01.T02 AT4G15475 26.316 266 159 7 190 452 362 593 9.09e-14 73.9
MsG0780037515.01.T02 AT4G15475 26.039 457 294 14 1 445 7 431 1.70e-13 73.2

Find 75 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGTTTGCTTGCTACTTT+AGG 0.233932 7:+27333212 MsG0780037515.01.T02:CDS
ACTTCTCTCTCTCAAATTCT+TGG 0.275406 7:+27332461 MsG0780037515.01.T02:CDS
ATCGGGGAATTGGTTGGTTA+TGG 0.284057 7:+27332733 MsG0780037515.01.T02:CDS
TGAAGGTTAGAGGGTGTAAA+AGG 0.289635 7:+27333339 MsG0780037515.01.T02:CDS
TAACTCATTGGAATCACTTT+TGG 0.292711 7:+27332917 MsG0780037515.01.T02:CDS
CGCGGAGATGATCGGGGAAT+TGG 0.310062 7:+27332723 MsG0780037515.01.T02:CDS
CAAAGTTGTTGTCTTGTAAC+TGG 0.316411 7:+27333104 MsG0780037515.01.T02:CDS
AAGGTTTGCTTGCTACTTTA+GGG 0.324348 7:+27333213 MsG0780037515.01.T02:CDS
TAAGAAGCTTCAATTTCTTA+AGG 0.328045 7:-27332770 None:intergenic
TAATGAAATGTTGTTTGATA+AGG 0.338000 7:+27333274 MsG0780037515.01.T02:CDS
TATTCATTTGGTTGATTTGA+AGG 0.350964 7:+27333322 MsG0780037515.01.T02:CDS
CTTCTTAGTTGTCAAGGAAT+TGG 0.351483 7:+27332786 MsG0780037515.01.T02:CDS
TTGTTTGGGGATAGAATCTA+AGG 0.352306 7:+27333430 MsG0780037515.01.T02:CDS
TGTTGATGTTATGCATTGTT+TGG 0.360579 7:+27333415 MsG0780037515.01.T02:CDS
AGGAAATAGCAGAGAGAAGA+AGG 0.364750 7:-27332419 None:intergenic
GTGTAAAAGGCTTACTAGTT+TGG 0.367192 7:+27333352 MsG0780037515.01.T02:CDS
TATAGAAAGAGAGGTCAATT+TGG 0.369792 7:-27332532 None:intergenic
GTTGGTTTCATGTATTCATT+TGG 0.386325 7:+27333310 MsG0780037515.01.T02:CDS
GTTGATGTTATGCATTGTTT+GGG 0.391014 7:+27333416 MsG0780037515.01.T02:CDS
TGCACAACATTGTAACTCAT+TGG 0.393088 7:+27332905 MsG0780037515.01.T02:CDS
GAGTAATGGTCTTGAAGAAT+TGG 0.407760 7:+27333157 MsG0780037515.01.T02:CDS
TTGTTCACATTTGAGAAGAT+TGG 0.410696 7:+27333475 MsG0780037515.01.T02:CDS
CTACTTTAGGGCAACATTTG+AGG 0.411645 7:+27333225 MsG0780037515.01.T02:CDS
TGTAACTGGTGAAGGGCTTA+AGG 0.412343 7:+27333118 MsG0780037515.01.T02:CDS
TTGGTTGATTTGAAGGTTAG+AGG 0.412803 7:+27333329 MsG0780037515.01.T02:CDS
GGGTATTCGCGGAGATGATC+GGG 0.416866 7:+27332716 MsG0780037515.01.T02:CDS
TTCGAGGCCTTAGGAGTCTT+AGG 0.420772 7:+27333078 MsG0780037515.01.T02:CDS
GTGATGGAAGAGAGAGGAAC+AGG 0.425474 7:-27332489 None:intergenic
AAATTGAGCTCAAAACTTGT+AGG 0.426995 7:+27332853 MsG0780037515.01.T02:CDS
AGAGAGAAGGGTGTTGATTG+AGG 0.435748 7:-27332341 None:intergenic
TTGAGAAGATTGGAAGTTGA+GGG 0.438613 7:+27333485 MsG0780037515.01.T02:CDS
CTTAGTTGTCAAGGAATTGG+TGG 0.443018 7:+27332789 MsG0780037515.01.T02:CDS
TTTAGAAGAAGAAGATGAAG+AGG 0.443823 7:-27332439 None:intergenic
ACTTGTAGGAGCGTGGTTGA+TGG 0.444193 7:+27332867 MsG0780037515.01.T02:CDS
CAATCTCCCTTGTTTCAAAA+CGG 0.447057 7:+27332238 MsG0780037515.01.T02:CDS
GAGAGAGAGAAGAGAGAGAA+GGG 0.453235 7:-27332353 None:intergenic
TGGCATTGGTTACCATGGTT+AGG 0.461638 7:+27333372 MsG0780037515.01.T02:CDS
GGAAAGAGATGGAGGAAGAA+AGG 0.467701 7:-27332320 None:intergenic
CTTTGTTTCGAGGGTATTCG+CGG 0.474905 7:+27332705 MsG0780037515.01.T02:CDS
AGAGTTTGAGAGAGAAGTGA+TGG 0.484444 7:-27332505 None:intergenic
TTGAAGCTTCTTAGTTGTCA+AGG 0.492479 7:+27332780 MsG0780037515.01.T02:CDS
TGTTGTCTTGTAACTGGTGA+AGG 0.496531 7:+27333110 MsG0780037515.01.T02:CDS
ATTGAAGAGAAAGAAGAAGA+TGG 0.497013 7:-27332219 None:intergenic
AAGGCTTACTAGTTTGGCAT+TGG 0.497860 7:+27333358 MsG0780037515.01.T02:CDS
GGAAATAGCAGAGAGAAGAA+GGG 0.500473 7:-27332418 None:intergenic
GATGTTGTTGAAAGGGAGAA+AGG 0.510088 7:+27333194 MsG0780037515.01.T02:CDS
GTTGAAACGAAGAGAAAGAG+AGG 0.515360 7:-27332289 None:intergenic
AGAGAGAGAGAAGAGAGAGA+AGG 0.524332 7:-27332354 None:intergenic
CATGATGGTGGTAGCAGAGA+GGG 0.526886 7:+27332942 MsG0780037515.01.T02:CDS
CTAGGTGTGGCAATGAGTAA+TGG 0.527148 7:+27333143 MsG0780037515.01.T02:CDS
TGGTTGATTTGAAGGTTAGA+GGG 0.527430 7:+27333330 MsG0780037515.01.T02:CDS
GTTGTCTTGTAACTGGTGAA+GGG 0.535998 7:+27333111 MsG0780037515.01.T02:CDS
AGGGTATTCGCGGAGATGAT+CGG 0.537052 7:+27332715 MsG0780037515.01.T02:CDS
TTTGAGAAGATTGGAAGTTG+AGG 0.540367 7:+27333484 MsG0780037515.01.T02:CDS
TTGGAAAGTCTTTGTTTCGA+GGG 0.542349 7:+27332696 MsG0780037515.01.T02:CDS
TTTGGAAAGTCTTTGTTTCG+AGG 0.543255 7:+27332695 MsG0780037515.01.T02:CDS
AGAGAAGTGATGGAAGAGAG+AGG 0.550322 7:-27332495 None:intergenic
GAAATAGCAGAGAGAAGAAG+GGG 0.558174 7:-27332417 None:intergenic
ATTGAGAGATGTTTCAAGCA+AGG 0.560112 7:-27332597 None:intergenic
TTGATTGAGGAAAGAGATGG+AGG 0.560317 7:-27332328 None:intergenic
GGTGAAGGGCTTAAGGCTCT+AGG 0.561728 7:+27333125 MsG0780037515.01.T02:CDS
GAGATGATCGGGGAATTGGT+TGG 0.567066 7:+27332727 MsG0780037515.01.T02:CDS
TAGTTTGGCATTGGTTACCA+TGG 0.573725 7:+27333367 MsG0780037515.01.T02:CDS
AAACTGTGATGTTGTTGAAA+GGG 0.574635 7:+27333187 MsG0780037515.01.T02:CDS
TGAGAGAGATATAGAAAGAG+AGG 0.580685 7:-27332541 None:intergenic
TCTCCCTTGTTTCAAAACGG+TGG 0.591467 7:+27332241 MsG0780037515.01.T02:CDS
TTTGAAGCCTAAGACTCCTA+AGG 0.591495 7:-27333085 None:intergenic
TAAACTGTGATGTTGTTGAA+AGG 0.591971 7:+27333186 MsG0780037515.01.T02:CDS
GTGTTGATTGAGGAAAGAGA+TGG 0.615678 7:-27332331 None:intergenic
GCTCAAAACTTGTAGGAGCG+TGG 0.642741 7:+27332860 MsG0780037515.01.T02:CDS
AGGGCTTAAGGCTCTAGGTG+TGG 0.674196 7:+27333130 MsG0780037515.01.T02:CDS
TCTCTTACAACTCCTAACCA+TGG 0.677523 7:-27333384 None:intergenic
TTGATGTTATGCATTGTTTG+GGG 0.683634 7:+27333417 MsG0780037515.01.T02:CDS
TCATGATGGTGGTAGCAGAG+AGG 0.685433 7:+27332941 MsG0780037515.01.T02:CDS
GGTATTCGCGGAGATGATCG+GGG 0.692588 7:+27332717 MsG0780037515.01.T02:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTTTTTTGTTCTTTTG+AGG + Chr7:27332617-27332636 MsG0780037515.01.T02:CDS 20.0%
!!! TAATGAAATGTTGTTTGATA+AGG + Chr7:27333274-27333293 MsG0780037515.01.T02:CDS 20.0%
! TAAGAAGCTTCAATTTCTTA+AGG - Chr7:27332773-27332792 None:intergenic 25.0%
!! CAAATAGATGATTGTTTTCA+AGG - Chr7:27333037-27333056 None:intergenic 25.0%
!!! CATGATTTTGATAAGGAATT+GGG + Chr7:27332672-27332691 MsG0780037515.01.T02:CDS 25.0%
!!! TAAGGATTTTGTTTCAATGT+TGG + Chr7:27333292-27333311 MsG0780037515.01.T02:CDS 25.0%
!!! TATTCATTTGGTTGATTTGA+AGG + Chr7:27333322-27333341 MsG0780037515.01.T02:CDS 25.0%
!!! TCATGATTTTGATAAGGAAT+TGG + Chr7:27332671-27332690 MsG0780037515.01.T02:CDS 25.0%
!!! TGAAAGTCATGATTTTGATA+AGG + Chr7:27332665-27332684 MsG0780037515.01.T02:CDS 25.0%
AAACTGTGATGTTGTTGAAA+GGG + Chr7:27333187-27333206 MsG0780037515.01.T02:CDS 30.0%
AAATTGAGCTCAAAACTTGT+AGG + Chr7:27332853-27332872 MsG0780037515.01.T02:CDS 30.0%
ATTGAAGAGAAAGAAGAAGA+TGG - Chr7:27332222-27332241 None:intergenic 30.0%
GTTGATGTTATGCATTGTTT+GGG + Chr7:27333416-27333435 MsG0780037515.01.T02:CDS 30.0%
TAAACTGTGATGTTGTTGAA+AGG + Chr7:27333186-27333205 MsG0780037515.01.T02:CDS 30.0%
TATAGAAAGAGAGGTCAATT+TGG - Chr7:27332535-27332554 None:intergenic 30.0%
TGTTGATGTTATGCATTGTT+TGG + Chr7:27333415-27333434 MsG0780037515.01.T02:CDS 30.0%
TTGATGTTATGCATTGTTTG+GGG + Chr7:27333417-27333436 MsG0780037515.01.T02:CDS 30.0%
TTGTTCACATTTGAGAAGAT+TGG + Chr7:27333475-27333494 MsG0780037515.01.T02:CDS 30.0%
TTTAGAAGAAGAAGATGAAG+AGG - Chr7:27332442-27332461 None:intergenic 30.0%
! AAAGAGAGGTTTTTGATGAA+CGG - Chr7:27332278-27332297 None:intergenic 30.0%
! AAGAAGAAGATGGAAGTTTT+TGG - Chr7:27332212-27332231 None:intergenic 30.0%
! AAGACCAATTTTTCTCAACT+GGG + Chr7:27332563-27332582 MsG0780037515.01.T02:CDS 30.0%
! ACTTGATTTTCGTTTACCTA+TGG + Chr7:27333010-27333029 MsG0780037515.01.T02:CDS 30.0%
! GACTTTCAAAAACACTGTTT+TGG - Chr7:27332653-27332672 None:intergenic 30.0%
! GTTGGTTTCATGTATTCATT+TGG + Chr7:27333310-27333329 MsG0780037515.01.T02:CDS 30.0%
! TAACTCATTGGAATCACTTT+TGG + Chr7:27332917-27332936 MsG0780037515.01.T02:CDS 30.0%
! TCTTTTGTTCAATGTTTGCA+GGG + Chr7:27332822-27332841 MsG0780037515.01.T02:CDS 30.0%
! TTCTTTTGTTCAATGTTTGC+AGG + Chr7:27332821-27332840 MsG0780037515.01.T02:CDS 30.0%
! TTTTGATAAGGAATTGGGTT+TGG + Chr7:27332677-27332696 MsG0780037515.01.T02:CDS 30.0%
!!! TGTTTTTTGTTCTTTTGAGG+AGG + Chr7:27332620-27332639 MsG0780037515.01.T02:CDS 30.0%
ACTTCTCTCTCTCAAATTCT+TGG + Chr7:27332461-27332480 MsG0780037515.01.T02:CDS 35.0%
AGAACCCAGTTGAGAAAAAT+TGG - Chr7:27332570-27332589 None:intergenic 35.0%
ATTGAGAGATGTTTCAAGCA+AGG - Chr7:27332600-27332619 None:intergenic 35.0%
CAAAGTTGTTGTCTTGTAAC+TGG + Chr7:27333104-27333123 MsG0780037515.01.T02:CDS 35.0%
CTTCTTAGTTGTCAAGGAAT+TGG + Chr7:27332786-27332805 MsG0780037515.01.T02:CDS 35.0%
GTGTAAAAGGCTTACTAGTT+TGG + Chr7:27333352-27333371 MsG0780037515.01.T02:CDS 35.0%
TGAGAGAGATATAGAAAGAG+AGG - Chr7:27332544-27332563 None:intergenic 35.0%
TGCACAACATTGTAACTCAT+TGG + Chr7:27332905-27332924 MsG0780037515.01.T02:CDS 35.0%
TTCTGATGCTGCAAAAATGT+TGG + Chr7:27333517-27333536 MsG0780037515.01.T02:CDS 35.0%
TTGAAGCTTCTTAGTTGTCA+AGG + Chr7:27332780-27332799 MsG0780037515.01.T02:CDS 35.0%
TTGAGAAGATTGGAAGTTGA+GGG + Chr7:27333485-27333504 MsG0780037515.01.T02:CDS 35.0%
TTGTTTGGGGATAGAATCTA+AGG + Chr7:27333430-27333449 MsG0780037515.01.T02:CDS 35.0%
TTTGAGAAGATTGGAAGTTG+AGG + Chr7:27333484-27333503 MsG0780037515.01.T02:CDS 35.0%
! ATGATGATGATGATGATGAG+AGG - Chr7:27332386-27332405 None:intergenic 35.0%
! CAAGACCAATTTTTCTCAAC+TGG + Chr7:27332562-27332581 MsG0780037515.01.T02:CDS 35.0%
! CAATCTCCCTTGTTTCAAAA+CGG + Chr7:27332238-27332257 MsG0780037515.01.T02:CDS 35.0%
! GAGTAATGGTCTTGAAGAAT+TGG + Chr7:27333157-27333176 MsG0780037515.01.T02:CDS 35.0%
! TTGGAAAGTCTTTGTTTCGA+GGG + Chr7:27332696-27332715 MsG0780037515.01.T02:CDS 35.0%
! TTTGGAAAGTCTTTGTTTCG+AGG + Chr7:27332695-27332714 MsG0780037515.01.T02:CDS 35.0%
!! AAAGGTTTGCTTGCTACTTT+AGG + Chr7:27333212-27333231 MsG0780037515.01.T02:CDS 35.0%
!! AAGGTTTGCTTGCTACTTTA+GGG + Chr7:27333213-27333232 MsG0780037515.01.T02:CDS 35.0%
!! ATATGAATTTTCGAGGCCTT+AGG + Chr7:27333069-27333088 MsG0780037515.01.T02:CDS 35.0%
!! TGATTGTTTTCAAGGTCCAT+AGG - Chr7:27333029-27333048 None:intergenic 35.0%
!! TGGTTGATTTGAAGGTTAGA+GGG + Chr7:27333330-27333349 MsG0780037515.01.T02:CDS 35.0%
!! TTGGTTGATTTGAAGGTTAG+AGG + Chr7:27333329-27333348 MsG0780037515.01.T02:CDS 35.0%
!!! GAATCACTTTTGGTTCATGA+TGG + Chr7:27332927-27332946 MsG0780037515.01.T02:CDS 35.0%
AGAGTTTGAGAGAGAAGTGA+TGG - Chr7:27332508-27332527 None:intergenic 40.0%
AGGAAATAGCAGAGAGAAGA+AGG - Chr7:27332422-27332441 None:intergenic 40.0%
CTTAGTTGTCAAGGAATTGG+TGG + Chr7:27332789-27332808 MsG0780037515.01.T02:CDS 40.0%
GAAATAGCAGAGAGAAGAAG+GGG - Chr7:27332420-27332439 None:intergenic 40.0%
GATGTTGTTGAAAGGGAGAA+AGG + Chr7:27333194-27333213 MsG0780037515.01.T02:CDS 40.0%
GGAAATAGCAGAGAGAAGAA+GGG - Chr7:27332421-27332440 None:intergenic 40.0%
GTTGAAACGAAGAGAAAGAG+AGG - Chr7:27332292-27332311 None:intergenic 40.0%
GTTGTCTTGTAACTGGTGAA+GGG + Chr7:27333111-27333130 MsG0780037515.01.T02:CDS 40.0%
TCTCTTACAACTCCTAACCA+TGG - Chr7:27333387-27333406 None:intergenic 40.0%
TGTTGTCTTGTAACTGGTGA+AGG + Chr7:27333110-27333129 MsG0780037515.01.T02:CDS 40.0%
TTGATTGAGGAAAGAGATGG+AGG - Chr7:27332331-27332350 None:intergenic 40.0%
! AAGGCTTACTAGTTTGGCAT+TGG + Chr7:27333358-27333377 MsG0780037515.01.T02:CDS 40.0%
! ATGATGATGATGATGAGAGG+AGG - Chr7:27332383-27332402 None:intergenic 40.0%
! GCGACGAATATGAATTTTCG+AGG + Chr7:27333062-27333081 MsG0780037515.01.T02:CDS 40.0%
! TGAAGGTTAGAGGGTGTAAA+AGG + Chr7:27333339-27333358 MsG0780037515.01.T02:CDS 40.0%
! TTTGAAGCCTAAGACTCCTA+AGG - Chr7:27333088-27333107 None:intergenic 40.0%
!! CTACTTTAGGGCAACATTTG+AGG + Chr7:27333225-27333244 MsG0780037515.01.T02:CDS 40.0%
!! GTGTTGATTGAGGAAAGAGA+TGG - Chr7:27332334-27332353 None:intergenic 40.0%
!! TAGTTTGGCATTGGTTACCA+TGG + Chr7:27333367-27333386 MsG0780037515.01.T02:CDS 40.0%
!!! AAGCCACCGTTTTGAAACAA+GGG - Chr7:27332247-27332266 None:intergenic 40.0%
!!! TCACTTTTGGTTCATGATGG+TGG + Chr7:27332930-27332949 MsG0780037515.01.T02:CDS 40.0%
AGAGAGAGAGAAGAGAGAGA+AGG - Chr7:27332357-27332376 None:intergenic 45.0%
CTAGGTGTGGCAATGAGTAA+TGG + Chr7:27333143-27333162 MsG0780037515.01.T02:CDS 45.0%
GAGAGAGAGAAGAGAGAGAA+GGG - Chr7:27332356-27332375 None:intergenic 45.0%
GGAAAGAGATGGAGGAAGAA+AGG - Chr7:27332323-27332342 None:intergenic 45.0%
TGTAACTGGTGAAGGGCTTA+AGG + Chr7:27333118-27333137 MsG0780037515.01.T02:CDS 45.0%
! AGAGAAGTGATGGAAGAGAG+AGG - Chr7:27332498-27332517 None:intergenic 45.0%
! ATCGGGGAATTGGTTGGTTA+TGG + Chr7:27332733-27332752 MsG0780037515.01.T02:CDS 45.0%
! TCTCCCTTGTTTCAAAACGG+TGG + Chr7:27332241-27332260 MsG0780037515.01.T02:CDS 45.0%
!! AGAGAGAAGGGTGTTGATTG+AGG - Chr7:27332344-27332363 None:intergenic 45.0%
!! CTTTGTTTCGAGGGTATTCG+CGG + Chr7:27332705-27332724 MsG0780037515.01.T02:CDS 45.0%
!! TGGCATTGGTTACCATGGTT+AGG + Chr7:27333372-27333391 MsG0780037515.01.T02:CDS 45.0%
!!! GAAGCCACCGTTTTGAAACA+AGG - Chr7:27332248-27332267 None:intergenic 45.0%
GAGATGATCGGGGAATTGGT+TGG + Chr7:27332727-27332746 MsG0780037515.01.T02:CDS 50.0%
GCTCAAAACTTGTAGGAGCG+TGG + Chr7:27332860-27332879 MsG0780037515.01.T02:CDS 50.0%
TTCGAGGCCTTAGGAGTCTT+AGG + Chr7:27333078-27333097 MsG0780037515.01.T02:CDS 50.0%
! ACTTGTAGGAGCGTGGTTGA+TGG + Chr7:27332867-27332886 MsG0780037515.01.T02:CDS 50.0%
! AGGGTATTCGCGGAGATGAT+CGG + Chr7:27332715-27332734 MsG0780037515.01.T02:CDS 50.0%
! GTGATGGAAGAGAGAGGAAC+AGG - Chr7:27332492-27332511 None:intergenic 50.0%
!! CATGATGGTGGTAGCAGAGA+GGG + Chr7:27332942-27332961 MsG0780037515.01.T02:CDS 50.0%
!! TCATGATGGTGGTAGCAGAG+AGG + Chr7:27332941-27332960 MsG0780037515.01.T02:CDS 50.0%
GGGTATTCGCGGAGATGATC+GGG + Chr7:27332716-27332735 MsG0780037515.01.T02:CDS 55.0%
GGTATTCGCGGAGATGATCG+GGG + Chr7:27332717-27332736 MsG0780037515.01.T02:CDS 55.0%
GGTGAAGGGCTTAAGGCTCT+AGG + Chr7:27333125-27333144 MsG0780037515.01.T02:CDS 55.0%
!! AGGGCTTAAGGCTCTAGGTG+TGG + Chr7:27333130-27333149 MsG0780037515.01.T02:CDS 55.0%
CGCGGAGATGATCGGGGAAT+TGG + Chr7:27332723-27332742 MsG0780037515.01.T02:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 27332168 27333571 27332168 ID=MsG0780037515.01;Name=MsG0780037515.01
Chr7 mRNA 27332168 27333571 27332168 ID=MsG0780037515.01.T01;Parent=MsG0780037515.01;Name=MsG0780037515.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|0|0|2|0|397
Chr7 exon 27332168 27332276 27332168 ID=MsG0780037515.01.T01:exon:12677;Parent=MsG0780037515.01.T01
Chr7 exon 27332487 27333571 27332487 ID=MsG0780037515.01.T01:exon:12678;Parent=MsG0780037515.01.T01
Chr7 CDS 27332168 27332276 27332168 ID=MsG0780037515.01.T01:cds;Parent=MsG0780037515.01.T01
Chr7 CDS 27332487 27333571 27332487 ID=MsG0780037515.01.T01:cds;Parent=MsG0780037515.01.T01
Chr7 mRNA 27332168 27333571 27332168 ID=MsG0780037515.01.T02;Parent=MsG0780037515.01;Name=MsG0780037515.01.T02;_AED=0.40;_eAED=0.40;_QI=0|-1|0|1|-1|1|1|0|467
Chr7 exon 27332168 27333571 27332168 ID=MsG0780037515.01.T02:exon:12679;Parent=MsG0780037515.01.T02
Chr7 CDS 27332168 27333571 27332168 ID=MsG0780037515.01.T02:cds;Parent=MsG0780037515.01.T02
Gene Sequence

>MsG0780037515.01.T01

ATGGAGAATAGCTTATACGATGAACTATTGCAAGAAATATTCCAAAAACTTCCATCTTCTTCTTTCTCTTCAATCTCCCTTGTTTCAAAACGGTGGCTTCATCTCTACCCTCCTGTTCCTCTCTCTTCCATCACTTCTCTCTCAAACTCTTGTACCAAATTGACCTCTCTTTCTATATCTCTCTCAAGACCAATTTTTCTCAACTGGGTTCTGTTTTTACCTTGCTTGAAACATCTCTCAATTGTTTTTTGTTCTTTTGAGGAGGTGAATTTCCAAAACAGTGTTTTTGAAAGTCATGATTTTGATAAGGAATTGGGTTTGGAAAGTCTTTGTTTCGAGGGTATTCGCGGAGATGATCGGGGAATTGGTTGGTTATGGAAGAGATGCAGAAACCTTAAGAAATTGAAGCTTCTTAGTTGTCAAGGAATTGGTGGTTCTTACTCTTCTTTTGTTCAATGTTTGCAGGGTATTCAACAAATTGAGCTCAAAACTTGTAGGAGCGTGGTTGATGGAGTTTTGTTGAATCTTGCACAACATTGTAACTCATTGGAATCACTTTTGGTTCATGATGGTGGTAGCAGAGAGGGTTTGCTACATTTCTTTTCAAATTGTAGTTCTAATAATTTGCATAAACTTGATTTTCGTTTACCTATGGACCTTGAAAACAATCATCTATTTGCTATTGCGACGAATATGAATTTTCGAGGCCTTAGGAGTCTTAGGCTTCAAAGTTGTTGTCTTGTAACTGGTGAAGGGCTTAAGGCTCTAGGTGTGGCAATGAGTAATGGTCTTGAAGAATTGGCACTCGTAAACTGTGATGTTGTTGAAAGGGAGAAAGGTTTGCTTGCTACTTTAGGGCAACATTTGAGGCAATTGAAGAAACTTGATTTGTCTCATAATGAAATGTTGTTTGATAAGGATTTTGTTTCAATGTTGGTTTCATGTATTCATTTGGTTGATTTGAAGGTTAGAGGGTGTAAAAGGCTTACTAGTTTGGCATTGGTTACCATGGTTAGGAGTTGTAAGAGACTTGAAAATGTTGATGTTATGCATTGTTTGGGGATAGAATCTAAGGCTATTGAACTCTTTGTTAAGAATTGTTCACATTTGAGAAGATTGGAAGTTGAGGGAAGCAAACTTTCTGATGCTGCAAAAATGTTGGCATCAAATAAATTTATTGAACTTGTTCTCTAA

>MsG0780037515.01.T02

ATGGAGAATAGCTTATACGATGAACTATTGCAAGAAATATTCCAAAAACTTCCATCTTCTTCTTTCTCTTCAATCTCCCTTGTTTCAAAACGGTGGCTTCATCTCTACCGTTCATCAAAAACCTCTCTTTCTCTTCGTTTCAACAATCAACACCTTTCTTCCTCCATCTCTTTCCTCAATCAACACCCTTCTCTCTCTTCTCTCTCTCTCATCCTCCTCTCATCATCATCATCATCATCATCAACAACACCCCTTCTTCTCTCTGCTATTTCCTCTTCATCTTCTTCTTCTAAACTTCTCTCTCTCAAATTCTTGGCTGCTCCTGTTCCTCTCTCTTCCATCACTTCTCTCTCAAACTCTTGTACCAAATTGACCTCTCTTTCTATATCTCTCTCAAGACCAATTTTTCTCAACTGGGTTCTGTTTTTACCTTGCTTGAAACATCTCTCAATTGTTTTTTGTTCTTTTGAGGAGGTGAATTTCCAAAACAGTGTTTTTGAAAGTCATGATTTTGATAAGGAATTGGGTTTGGAAAGTCTTTGTTTCGAGGGTATTCGCGGAGATGATCGGGGAATTGGTTGGTTATGGAAGAGATGCAGAAACCTTAAGAAATTGAAGCTTCTTAGTTGTCAAGGAATTGGTGGTTCTTACTCTTCTTTTGTTCAATGTTTGCAGGGTATTCAACAAATTGAGCTCAAAACTTGTAGGAGCGTGGTTGATGGAGTTTTGTTGAATCTTGCACAACATTGTAACTCATTGGAATCACTTTTGGTTCATGATGGTGGTAGCAGAGAGGGTTTGCTACATTTCTTTTCAAATTGTAGTTCTAATAATTTGCATAAACTTGATTTTCGTTTACCTATGGACCTTGAAAACAATCATCTATTTGCTATTGCGACGAATATGAATTTTCGAGGCCTTAGGAGTCTTAGGCTTCAAAGTTGTTGTCTTGTAACTGGTGAAGGGCTTAAGGCTCTAGGTGTGGCAATGAGTAATGGTCTTGAAGAATTGGCACTCGTAAACTGTGATGTTGTTGAAAGGGAGAAAGGTTTGCTTGCTACTTTAGGGCAACATTTGAGGCAATTGAAGAAACTTGATTTGTCTCATAATGAAATGTTGTTTGATAAGGATTTTGTTTCAATGTTGGTTTCATGTATTCATTTGGTTGATTTGAAGGTTAGAGGGTGTAAAAGGCTTACTAGTTTGGCATTGGTTACCATGGTTAGGAGTTGTAAGAGACTTGAAAATGTTGATGTTATGCATTGTTTGGGGATAGAATCTAAGGCTATTGAACTCTTTGTTAAGAATTGTTCACATTTGAGAAGATTGGAAGTTGAGGGAAGCAAACTTTCTGATGCTGCAAAAATGTTGGCATCAAATAAATTTATTGAACTTGTTCTCTAA

Protein sequence

>MsG0780037515.01.T01

MENSLYDELLQEIFQKLPSSSFSSISLVSKRWLHLYPPVPLSSITSLSNSCTKLTSLSISLSRPIFLNWVLFLPCLKHLSIVFCSFEEVNFQNSVFESHDFDKELGLESLCFEGIRGDDRGIGWLWKRCRNLKKLKLLSCQGIGGSYSSFVQCLQGIQQIELKTCRSVVDGVLLNLAQHCNSLESLLVHDGGSREGLLHFFSNCSSNNLHKLDFRLPMDLENNHLFAIATNMNFRGLRSLRLQSCCLVTGEGLKALGVAMSNGLEELALVNCDVVEREKGLLATLGQHLRQLKKLDLSHNEMLFDKDFVSMLVSCIHLVDLKVRGCKRLTSLALVTMVRSCKRLENVDVMHCLGIESKAIELFVKNCSHLRRLEVEGSKLSDAAKMLASNKFIELVL*

>MsG0780037515.01.T02

MENSLYDELLQEIFQKLPSSSFSSISLVSKRWLHLYRSSKTSLSLRFNNQHLSSSISFLNQHPSLSSLSLILLSSSSSSSSTTPLLLSAISSSSSSSKLLSLKFLAAPVPLSSITSLSNSCTKLTSLSISLSRPIFLNWVLFLPCLKHLSIVFCSFEEVNFQNSVFESHDFDKELGLESLCFEGIRGDDRGIGWLWKRCRNLKKLKLLSCQGIGGSYSSFVQCLQGIQQIELKTCRSVVDGVLLNLAQHCNSLESLLVHDGGSREGLLHFFSNCSSNNLHKLDFRLPMDLENNHLFAIATNMNFRGLRSLRLQSCCLVTGEGLKALGVAMSNGLEELALVNCDVVEREKGLLATLGQHLRQLKKLDLSHNEMLFDKDFVSMLVSCIHLVDLKVRGCKRLTSLALVTMVRSCKRLENVDVMHCLGIESKAIELFVKNCSHLRRLEVEGSKLSDAAKMLASNKFIELVL*