AlfalfaGEDB | MsG0480022951.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022951.01

KEGG: -
GO: -
PFAM: PF02493

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022951.01.T01	RHN43201.1	56.62	355	139	3	280	633	4	344	1.00E-112	355
MsG0480022951.01.T01	RHN43201.1	49.141	291	97	6	7	253	94	377	1.24E-61	222
MsG0480022951.01.T01	RHN43201.1	36.141	368	163	9	12	335	7	346	4.62E-38	157

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022951.01.T01	Q8RY89	46.561	189	101	0	282	470	7	195	7.37E-45	174

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022951.01.T01	A0A396GSR0	56.620	355	139	3	280	633	4	344	4.78e-113	355

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000470.01	MsG0480022951.01	0.830108	3.534703e-55	3.688693e-52
MsG0180001342.01	MsG0480022951.01	0.800944	1.136071e-48	5.358483e-46
MsG0480021925.01	MsG0480022951.01	0.802548	5.325812e-49	2.616121e-46
MsG0480022259.01	MsG0480022951.01	0.830166	3.421697e-55	3.576936e-52
MsG0480022262.01	MsG0480022951.01	0.819025	1.442230e-52	1.097303e-49
MsG0480022947.01	MsG0480022951.01	0.859084	5.283160e-63	1.378255e-59
MsG0480022951.01	MsG0580024363.01	-0.802753	4.830050e-49	2.385147e-46
MsG0480022951.01	MsG0580027766.01	0.814408	1.564023e-51	1.048668e-48
MsG0480022951.01	MsG0580027767.01	0.807532	4.827590e-50	2.695441e-47
MsG0480022951.01	MsG0580027922.01	0.807091	5.986699e-50	3.304493e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022951.01.T01	MTR_8g080860	70.703	256	75	0	279	534	9	264	3.43e-115	346
MsG0480022951.01.T01	MTR_8g080860	62.362	271	101	1	376	646	14	283	1.05e-105	322
MsG0480022951.01.T01	MTR_8g080860	62.128	235	78	2	3	227	50	283	1.70e-81	259
MsG0480022951.01.T01	MTR_8g080860	43.165	278	131	2	166	443	15	265	3.45e-54	187
MsG0480022951.01.T01	MTR_8g080860	31.970	269	144	5	113	352	8	266	1.37e-23	101
MsG0480022951.01.T01	MTR_8g080860	41.880	117	45	1	532	625	8	124	1.13e-15	78.2
MsG0480022951.01.T01	MTR_8g080860	37.168	113	48	1	286	398	177	266	5.21e-13	70.5
MsG0480022951.01.T01	MTR_8g080860	72.000	250	70	0	279	528	13	262	4.29e-115	346
MsG0480022951.01.T01	MTR_8g080860	62.362	271	101	1	376	646	18	287	1.54e-105	322
MsG0480022951.01.T01	MTR_8g080860	62.128	235	78	2	3	227	54	287	2.62e-81	259

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022951.01.T01	AT1G60890	46.561	189	101	0	282	470	7	195	7.52e-46	174
MsG0480022951.01.T01	AT1G60890	41.579	190	110	1	417	606	4	192	2.08e-36	146
MsG0480022951.01.T01	AT1G60890	41.398	186	108	1	378	563	11	195	2.98e-35	142
MsG0480022951.01.T01	AT1G60890	39.344	183	111	0	334	516	13	195	1.04e-32	135
MsG0480022951.01.T01	AT1G60890	39.344	183	100	3	15	187	11	192	3.86e-27	117
MsG0480022951.01.T01	AT1G60890	42.953	149	74	3	6	144	48	195	7.53e-24	107
MsG0480022951.01.T01	AT1G60890	31.884	138	70	2	96	210	10	146	2.69e-12	70.5
MsG0480022951.01.T01	AT1G60890	34.426	122	80	0	276	397	70	191	1.97e-11	67.8
MsG0480022951.01.T01	AT1G60890	46.561	189	101	0	282	470	19	207	1.18e-45	174
MsG0480022951.01.T01	AT1G60890	42.391	184	105	1	423	606	22	204	3.87e-36	145

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Find 182 sgRNAs with CRISPR-Local

Find 498 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAAAGGGATGGAAA+TGG	0.406849	4:-78977140	MsG0480022951.01.T01:CDS
AAAAGGAAAAGGGATGGAAA+TGG	0.437766	4:-78970333	MsG0480022951.01.T01:CDS
AAAGGAAAAGGGATGGAAAT+GGG	0.426600	4:-78970332	MsG0480022951.01.T01:CDS
AAAGGAAAAGGGATGGAAAT+GGG	0.459211	4:-78977139	MsG0480022951.01.T01:CDS
AAAGGGATAATTGATGGAAA+AGG	0.418544	4:-78970747	MsG0480022951.01.T01:CDS
AAATGGAAAATAGATAGGAA+AGG	0.576814	4:-78970609	MsG0480022951.01.T01:CDS
AAATTGGAAGAAAAGGAAAA+GGG	0.574409	4:-78977150	MsG0480022951.01.T01:CDS
AAATTGGAATGAAGGGAAAA+GGG	0.524702	4:-78977009	MsG0480022951.01.T01:CDS
AACAATATACGAGGGTGATT+GGG	0.451603	4:-78976817	MsG0480022951.01.T01:CDS
AACAATATATGAGGGCGATT+GGG	0.469878	4:-78970910	MsG0480022951.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGGATAATTGATGGAAA+AGG	-	Chr4:78976736-78976755	MsG0480022951.01.T01:CDS	30.0%
AAAGTTGAGTTATTAACCCT+AGG	-	Chr4:78974600-78974619	MsG0480022951.01.T01:intron	30.0%
AAATTGGAATGAAGGGAAAA+GGG	-	Chr4:78970474-78970493	MsG0480022951.01.T01:CDS	30.0%
AACAAAAGATGAGAGAAACA+AGG	-	Chr4:78974818-78974837	MsG0480022951.01.T01:intron	30.0%
AACCTGATCTTGAATCATAA+GGG	-	Chr4:78974880-78974899	MsG0480022951.01.T01:intron	30.0%
AAGGGATAATTGATGGAAAA+GGG	-	Chr4:78976737-78976756	MsG0480022951.01.T01:CDS	30.0%
AAGTGATATGGTATTCGATA+TGG	-	Chr4:78970833-78970852	MsG0480022951.01.T01:CDS	30.0%
AAGTTGTAAACTTAGACTTC+TGG	-	Chr4:78974702-78974721	MsG0480022951.01.T01:intron	30.0%
AATCTAGCCATTGAAAAATG+TGG	+	Chr4:78972460-78972479	None:intergenic	30.0%
ACTTATGTTGTCCAAAAATG+AGG	+	Chr4:78972983-78973002	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	78969924	78977581	78969924	ID=MsG0480022951.01;Name=MsG0480022951.01
Chr4	mRNA	78969924	78977581	78969924	ID=MsG0480022951.01.T01;Parent=MsG0480022951.01;Name=MsG0480022951.01.T01;_AED=0.48;_eAED=0.52;_QI=0\|0\|0\|1\|0.33\|0.5\|4\|0\|646
Chr4	exon	78977464	78977581	78977464	ID=MsG0480022951.01.T01:exon:23569;Parent=MsG0480022951.01.T01
Chr4	exon	78976706	78977296	78976706	ID=MsG0480022951.01.T01:exon:23568;Parent=MsG0480022951.01.T01
Chr4	exon	78971378	78971499	78971378	ID=MsG0480022951.01.T01:exon:23567;Parent=MsG0480022951.01.T01
Chr4	exon	78969924	78971033	78969924	ID=MsG0480022951.01.T01:exon:23566;Parent=MsG0480022951.01.T01
Chr4	CDS	78977464	78977581	78977464	ID=MsG0480022951.01.T01:cds;Parent=MsG0480022951.01.T01
Chr4	CDS	78976706	78977296	78976706	ID=MsG0480022951.01.T01:cds;Parent=MsG0480022951.01.T01
Chr4	CDS	78971378	78971499	78971378	ID=MsG0480022951.01.T01:cds;Parent=MsG0480022951.01.T01
Chr4	CDS	78969924	78971033	78969924	ID=MsG0480022951.01.T01:cds;Parent=MsG0480022951.01.T01

Gene Sequence

>MsG0480022951.01.T01

CTTTCTGATCTGATTTTGGATGGAAAAGGGATTATGAATTTGGCTAATGGTGATGTTTTCGATGGTTCTTCGTCAAATGGATTTAAACATGGATATGGAGTTTATAGATATGCAAATGGGGAAAATAGATGGAAAAGGTATTTTGAATTGGCTAATGGTGATGTTTTCGATGGTTGTTGGTCCAATGGACTTATACATGGATCTGGAGTTTATAGAAATGCAAATGGGGATATCTATAATGGAAATTGGAAGAAAAGGAAAAGGGATGGAAATGGGATTATGAATTGGGCTAATGGTGATGTTTTTAATGGTCGTTGGTCAAATGGACTTAGACATGGATCTGCAGGAGTTTATAGATTCGCAAATGGGGATGTCTATATTGGAAATTGGAATGAAGGGAAAAGGGATGGAAAAGGGATTTTGAATAAGGCTAATGGTGATGTTTTTGTTGGTTGTTGGTCAAATGGACTTAGAAATGGATCTGGAGTTTATAGATTTGCAAATGGAGATGTGTACTTCGGAAACTTCAAGAGTAACCTTTTCCATGGACACGGAAAGTTCACTTGGTCGAATGGAACAATATACGAGGGTGATTGGGTGGATGGAGAAATGACAGGGAACAGATTGATGATACCAAGCCTTCTATGGAGATTTCTCCAGAGAATCAAATCTATTATTATCTTAAGCTTAATTTTCAACAAAGGATCATTTTCAATAATATTGTTCCTTCTTTTCGAACTGATTTTTGAATATATTCAATTTCAATCAGTGAAAGTTTGCAAGTCATGGAGGACGATGGAAGGTAATATTCATCGAAACCACAACTACTTTTGTAGTTTTAAAGAGAAGTCTTTTTCAAATGGGGATGTCTACATTGGTAACTTCAAGGGTGAACTTTGTCATGGCAACGGAAAGTACACATGGTCAGATGGAACAATATATGAGGGCGATTGGGTTGATGGGAAAATGACAGGGAAAGGGATTATGAAGTGGGTTAGTGGTAATGTTTTTGATGGTTGTTGGTTAAATGGACTTAAACATGGATATGGGGTTTGTAGATATGTAAATGGGGATGTTTATAGTGGAAATTGGGAAAAAGGGATAATTGATGGAAAAGGGACTTTGAATTTGGCTAATGGTAATGTTTTCGATGGTTGTTGGTCAAATGGATTTATACATGGATATGGAGTCTGTAGATATGCTAATGGTGATGTCTACACTGGAAATTGGGAAAAATGGAAAATAGATAGGAAAGGGATTATGTATTGGGCTAATGGTGCTATTTTCAATGGTTGTTGGGCAAATGGACTTAAACATGGATACGGGGTTTATAGACATGCAAATGGGGATGTCTACACAGGAAATTGGGAAAAAGGGAAAATAGATGGGAAAAGGATTATGTATTGGGCTAATGGTGCTATTTTTGATGGTTATTGGGCAAATGGACTTAGAAACGGATATGGAGTTTATAGAAATGCAAATGGGGATGTCTATAACGGAAATTGGAAAAAAAGGAAAAGGGATGGAAATGGGATTATGAATTGGGCTAATGGTGATGTTTTTAATGGTCGTTGGTCAAATGGACTTAGACATGGATCTGCAGGAGTTTATAGATTCGCAAATGGGGATGTCTATATTGGAAATTGGAATGAAGGGAAAAGGAATGGAAAAGGGATTTTGAATAGGGCTAATGGTGATGTTTTTGTTGGTTGTTGGTCAAATGGACTTAGAAATGGATCTGGAGTTTATAGATTTGCAAATGGGGATGTGTACTTCGGAAATTTCAAGAGTAACCTTTTCCATGGACACGGAAAGTTCACATGGTCTAATGGAGCAATATACGAGGGCGATTGGGTGGATGGAGAAATGACAGGGAACAGATTGATGATACCAAGCCTTCTATGGAGATTTCTCCAGAGAATCAAATCTATTATTATCTGA

Protein sequence

>MsG0480022951.01.T01

LSDLILDGKGIMNLANGDVFDGSSSNGFKHGYGVYRYANGENRWKRYFELANGDVFDGCWSNGLIHGSGVYRNANGDIYNGNWKKRKRDGNGIMNWANGDVFNGRWSNGLRHGSAGVYRFANGDVYIGNWNEGKRDGKGILNKANGDVFVGCWSNGLRNGSGVYRFANGDVYFGNFKSNLFHGHGKFTWSNGTIYEGDWVDGEMTGNRLMIPSLLWRFLQRIKSIIILSLIFNKGSFSIILFLLFELIFEYIQFQSVKVCKSWRTMEGNIHRNHNYFCSFKEKSFSNGDVYIGNFKGELCHGNGKYTWSDGTIYEGDWVDGKMTGKGIMKWVSGNVFDGCWLNGLKHGYGVCRYVNGDVYSGNWEKGIIDGKGTLNLANGNVFDGCWSNGFIHGYGVCRYANGDVYTGNWEKWKIDRKGIMYWANGAIFNGCWANGLKHGYGVYRHANGDVYTGNWEKGKIDGKRIMYWANGAIFDGYWANGLRNGYGVYRNANGDVYNGNWKKRKRDGNGIMNWANGDVFNGRWSNGLRHGSAGVYRFANGDVYIGNWNEGKRNGKGILNRANGDVFVGCWSNGLRNGSGVYRFANGDVYFGNFKSNLFHGHGKFTWSNGAIYEGDWVDGEMTGNRLMIPSLLWRFLQRIKSIII*