Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001342.01.T01 | XP_039688434.1 | 73.846 | 455 | 87 | 5 | 1 | 440 | 1 | 438 | 0 | 669 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001342.01.T01 | Q8L3W1 | 26.254 | 339 | 197 | 10 | 7 | 298 | 4 | 336 | 8.97E-21 | 96.3 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001342.01.T01 | A0A396JPN4 | 73.846 | 455 | 87 | 5 | 1 | 440 | 1 | 438 | 0.0 | 669 |
Gene ID | Type | Classification |
---|---|---|
MsG0180001342.01.T01 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048764.01 | MsG0180001342.01 | 0.801973 | 6.993799e-49 | 3.385342e-46 |
MsG0180000470.01 | MsG0180001342.01 | 0.843881 | 1.066800e-58 | 1.692606e-55 |
MsG0180001063.01 | MsG0180001342.01 | 0.811114 | 8.232665e-51 | 5.052625e-48 |
MsG0180001342.01 | MsG0180002089.01 | 0.810334 | 1.213504e-50 | 7.294651e-48 |
MsG0180001342.01 | MsG0180003669.01 | 0.820684 | 6.021867e-53 | 4.797134e-50 |
MsG0180001342.01 | MsG0280006324.01 | 0.820727 | 5.887169e-53 | 4.695547e-50 |
MsG0180001342.01 | MsG0280007955.01 | 0.800596 | 1.338347e-48 | 6.256661e-46 |
MsG0180001342.01 | MsG0280010443.01 | 0.819517 | 1.114315e-52 | 8.593990e-50 |
MsG0180001342.01 | MsG0280011032.01 | 0.811084 | 8.354738e-51 | 5.123728e-48 |
MsG0180001342.01 | MsG0280011156.01 | 0.817556 | 3.101778e-52 | 2.266182e-49 |
MsG0180001342.01 | MsG0380011609.01 | 0.828105 | 1.081727e-54 | 1.064854e-51 |
MsG0180001342.01 | MsG0380014468.01 | 0.812999 | 3.194945e-51 | 2.061728e-48 |
MsG0180001342.01 | MsG0380015440.01 | 0.800044 | 1.733606e-48 | 7.991711e-46 |
MsG0180001342.01 | MsG0380015566.01 | 0.821673 | 3.563831e-53 | 2.918595e-50 |
MsG0180001342.01 | MsG0380015720.01 | 0.800071 | 1.711707e-48 | 7.896303e-46 |
MsG0180001342.01 | MsG0380016910.01 | 0.816397 | 5.648119e-52 | 3.997667e-49 |
MsG0180001342.01 | MsG0480018163.01 | 0.809811 | 1.573161e-50 | 9.328544e-48 |
MsG0180001342.01 | MsG0480018183.01 | 0.804595 | 2.003406e-49 | 1.037135e-46 |
MsG0180001342.01 | MsG0480018206.01 | 0.803069 | 4.156778e-49 | 2.069038e-46 |
MsG0180001342.01 | MsG0480018372.01 | 0.819949 | 8.879447e-53 | 6.931239e-50 |
MsG0180001342.01 | MsG0480018883.01 | 0.802285 | 6.031525e-49 | 2.943186e-46 |
MsG0180001342.01 | MsG0480018964.01 | 0.804359 | 2.243091e-49 | 1.154222e-46 |
MsG0180001342.01 | MsG0480021274.01 | 0.811581 | 6.518291e-51 | 4.050042e-48 |
MsG0180001342.01 | MsG0480021558.01 | 0.806376 | 8.478182e-50 | 4.594381e-47 |
MsG0180001342.01 | MsG0480021853.01 | 0.806329 | 8.670774e-50 | 4.693286e-47 |
MsG0180001342.01 | MsG0480021925.01 | 0.818584 | 1.816246e-52 | 1.364977e-49 |
MsG0180001342.01 | MsG0480022213.01 | -0.830314 | 3.149825e-55 | 3.306533e-52 |
MsG0180001342.01 | MsG0480022222.01 | 0.821730 | 3.456805e-53 | 2.835442e-50 |
MsG0180001342.01 | MsG0480022951.01 | 0.800944 | 1.136071e-48 | 5.358483e-46 |
MsG0180001342.01 | MsG0480022984.01 | 0.822747 | 2.007922e-53 | 1.695587e-50 |
MsG0180001342.01 | MsG0580024552.01 | 0.834336 | 3.179441e-56 | 3.761685e-53 |
MsG0180001342.01 | MsG0580025135.01 | 0.817347 | 3.456316e-52 | 2.510813e-49 |
MsG0180001342.01 | MsG0580025638.01 | 0.809479 | 1.854509e-50 | 1.090004e-47 |
MsG0180001342.01 | MsG0580027766.01 | 0.824990 | 5.981199e-54 | 5.383035e-51 |
MsG0180001342.01 | MsG0580027922.01 | 0.801593 | 8.369080e-49 | 4.012271e-46 |
MsG0180001342.01 | MsG0580028990.01 | 0.817757 | 2.794599e-52 | 2.053101e-49 |
MsG0180001342.01 | MsG0580029925.01 | 0.804519 | 2.077676e-49 | 1.073446e-46 |
MsG0180001342.01 | MsG0680030882.01 | 0.801458 | 8.919242e-49 | 4.261648e-46 |
MsG0180001342.01 | MsG0680031379.01 | 0.828481 | 8.779654e-55 | 8.737606e-52 |
MsG0180001342.01 | MsG0680031617.01 | 0.808009 | 3.822077e-50 | 2.160832e-47 |
MsG0180001342.01 | MsG0680032158.01 | 0.800424 | 1.450537e-48 | 6.752013e-46 |
MsG0180001342.01 | MsG0680033412.01 | 0.819657 | 1.035434e-52 | 8.016768e-50 |
MsG0180001342.01 | MsG0780037457.01 | 0.825641 | 4.195206e-54 | 3.846072e-51 |
MsG0180001342.01 | MsG0780038391.01 | 0.800469 | 1.420225e-48 | 6.617995e-46 |
MsG0180001342.01 | MsG0780039522.01 | 0.803795 | 2.940013e-49 | 1.491043e-46 |
MsG0180001342.01 | MsG0780039631.01 | 0.805512 | 1.287824e-49 | 6.826069e-47 |
MsG0180001342.01 | MsG0780040576.01 | -0.801197 | 1.008527e-48 | 4.787216e-46 |
MsG0180001342.01 | MsG0780040596.01 | 0.818918 | 1.524946e-52 | 1.156843e-49 |
MsG0180001342.01 | MsG0780041456.01 | 0.827843 | 1.250412e-54 | 1.221475e-51 |
MsG0180001342.01 | MsG0880042966.01 | 0.818922 | 1.522325e-52 | 1.154970e-49 |
MsG0180001342.01 | MsG0880044323.01 | 0.815575 | 8.616313e-52 | 5.962985e-49 |
MsG0180001342.01 | MsG0880044574.01 | 0.818675 | 1.732113e-52 | 1.305043e-49 |
MsG0180001342.01 | MsG0880045896.01 | 0.810243 | 1.269800e-50 | 7.615003e-48 |
MsG0180001342.01 | MsG0880045937.01 | 0.801849 | 7.414349e-49 | 3.577939e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001342.01.T01 | MTR_1g035570 | 71.652 | 448 | 70 | 5 | 1 | 438 | 1 | 401 | 0.0 | 602 |
MsG0180001342.01.T01 | MTR_1g035490 | 67.702 | 322 | 74 | 7 | 131 | 433 | 20 | 330 | 3.82e-132 | 384 |
MsG0180001342.01.T01 | MTR_1g035640 | 46.092 | 499 | 168 | 11 | 1 | 432 | 1 | 465 | 5.15e-127 | 376 |
MsG0180001342.01.T01 | MTR_1g035620 | 43.363 | 452 | 190 | 12 | 1 | 430 | 1 | 408 | 2.76e-108 | 326 |
MsG0180001342.01.T01 | MTR_1g050845 | 41.905 | 420 | 166 | 12 | 1 | 398 | 1 | 364 | 4.69e-85 | 277 |
MsG0180001342.01.T01 | MTR_6g061070 | 35.333 | 450 | 253 | 12 | 14 | 431 | 27 | 470 | 9.81e-76 | 244 |
MsG0180001342.01.T01 | MTR_1g035650 | 42.857 | 231 | 91 | 5 | 1 | 218 | 1 | 203 | 2.63e-48 | 164 |
MsG0180001342.01.T01 | MTR_8g103940 | 27.115 | 461 | 277 | 14 | 14 | 430 | 48 | 493 | 8.82e-39 | 146 |
MsG0180001342.01.T01 | MTR_1g108780 | 27.409 | 467 | 261 | 16 | 20 | 430 | 12 | 456 | 3.15e-38 | 144 |
MsG0180001342.01.T01 | MTR_7g050710 | 31.988 | 322 | 180 | 11 | 9 | 308 | 13 | 317 | 1.26e-34 | 131 |
MsG0180001342.01.T01 | MTR_5g044670 | 30.132 | 302 | 179 | 7 | 14 | 302 | 25 | 307 | 8.93e-34 | 129 |
MsG0180001342.01.T01 | MTR_7g050560 | 32.877 | 292 | 166 | 9 | 14 | 298 | 22 | 290 | 8.20e-33 | 126 |
MsG0180001342.01.T01 | MTR_3g098790 | 31.741 | 293 | 177 | 8 | 14 | 298 | 22 | 299 | 1.11e-32 | 126 |
MsG0180001342.01.T01 | MTR_7g050590 | 31.959 | 291 | 173 | 9 | 21 | 298 | 2 | 280 | 6.96e-31 | 120 |
MsG0180001342.01.T01 | MTR_1g035510 | 34.247 | 219 | 125 | 8 | 21 | 234 | 2 | 206 | 1.86e-29 | 115 |
MsG0180001342.01.T01 | MTR_7g050720 | 31.230 | 317 | 197 | 14 | 1 | 298 | 1 | 315 | 3.99e-29 | 116 |
MsG0180001342.01.T01 | MTR_7g050580 | 33.447 | 293 | 163 | 10 | 14 | 298 | 22 | 290 | 6.55e-29 | 115 |
MsG0180001342.01.T01 | MTR_1g035480 | 48.246 | 114 | 56 | 2 | 14 | 127 | 26 | 136 | 1.81e-28 | 110 |
MsG0180001342.01.T01 | MTR_3g061310 | 27.645 | 293 | 187 | 9 | 9 | 296 | 12 | 284 | 2.21e-27 | 110 |
MsG0180001342.01.T01 | MTR_1g033740 | 42.735 | 117 | 64 | 2 | 14 | 130 | 31 | 144 | 1.28e-26 | 106 |
MsG0180001342.01.T01 | MTR_3g061340 | 27.609 | 297 | 171 | 13 | 9 | 296 | 12 | 273 | 1.11e-25 | 105 |
MsG0180001342.01.T01 | MTR_3g061350 | 26.351 | 296 | 186 | 8 | 9 | 296 | 12 | 283 | 1.81e-25 | 105 |
MsG0180001342.01.T01 | MTR_1g035460 | 24.088 | 411 | 246 | 11 | 21 | 381 | 2 | 396 | 1.24e-24 | 105 |
MsG0180001342.01.T01 | MTR_3g061320 | 25.256 | 293 | 188 | 8 | 9 | 296 | 12 | 278 | 3.78e-24 | 101 |
MsG0180001342.01.T01 | MTR_1g035500 | 44.262 | 122 | 64 | 3 | 5 | 126 | 26 | 143 | 7.53e-24 | 98.6 |
MsG0180001342.01.T01 | MTR_4g119990 | 27.362 | 307 | 193 | 9 | 9 | 296 | 15 | 310 | 1.27e-23 | 102 |
MsG0180001342.01.T01 | MTR_3g061370 | 24.834 | 302 | 183 | 8 | 9 | 296 | 9 | 280 | 1.60e-23 | 100 |
MsG0180001342.01.T01 | MTR_6g043890 | 26.690 | 281 | 185 | 7 | 13 | 284 | 23 | 291 | 1.28e-22 | 98.6 |
MsG0180001342.01.T01 | MTR_1g035470 | 40.909 | 110 | 62 | 2 | 21 | 130 | 2 | 108 | 2.73e-22 | 92.8 |
MsG0180001342.01.T01 | MTR_1g035520 | 26.582 | 316 | 199 | 8 | 5 | 296 | 76 | 382 | 4.68e-21 | 94.7 |
MsG0180001342.01.T01 | MTR_1g035520 | 42.478 | 113 | 55 | 3 | 329 | 431 | 271 | 383 | 2.34e-17 | 84.0 |
MsG0180001342.01.T01 | MTR_3g061290 | 37.815 | 119 | 68 | 3 | 9 | 123 | 12 | 128 | 3.09e-19 | 85.9 |
MsG0180001342.01.T01 | MTR_3g061330 | 31.548 | 168 | 105 | 5 | 9 | 168 | 12 | 177 | 1.10e-18 | 85.5 |
MsG0180001342.01.T01 | MTR_1g034210 | 26.027 | 365 | 199 | 13 | 6 | 303 | 4 | 364 | 2.31e-18 | 86.7 |
MsG0180001342.01.T01 | MTR_3g005480 | 23.891 | 293 | 155 | 8 | 14 | 299 | 30 | 261 | 5.09e-14 | 72.4 |
MsG0180001342.01.T01 | MTR_1g021270 | 23.659 | 317 | 191 | 10 | 17 | 286 | 27 | 339 | 5.75e-14 | 74.3 |
MsG0180001342.01.T01 | MTR_4g068320 | 36.634 | 101 | 58 | 2 | 7 | 101 | 4 | 104 | 4.23e-13 | 71.2 |
MsG0180001342.01.T01 | MTR_7g050640 | 40.541 | 111 | 56 | 4 | 3 | 103 | 5 | 115 | 6.21e-13 | 65.5 |
MsG0180001342.01.T01 | MTR_1g034240 | 34.234 | 111 | 66 | 3 | 7 | 110 | 5 | 115 | 1.60e-12 | 69.3 |
MsG0180001342.01.T01 | MTR_3g005490 | 23.208 | 293 | 160 | 8 | 14 | 301 | 30 | 262 | 3.61e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180001342.01.T01 | AT3G18990 | 26.023 | 342 | 200 | 10 | 7 | 301 | 4 | 339 | 5.25e-22 | 97.4 |
MsG0180001342.01.T01 | AT3G18990 | 26.254 | 339 | 197 | 10 | 7 | 298 | 4 | 336 | 9.15e-22 | 96.3 |
Find 74 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATTAGCTGTGCTTCTTTA+AGG | 0.068553 | 1:-19695856 | None:intergenic |
TTTGCAAAGCCTTTCAAATA+TGG | 0.180110 | 1:-19698033 | MsG0180001342.01.T01:CDS |
AAATATCTTGGAGTTGAAAA+TGG | 0.201158 | 1:-19696055 | MsG0180001342.01.T01:CDS |
TATTTCTCCACATATTTCTT+TGG | 0.248757 | 1:+19698168 | None:intergenic |
TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1:+19697927 | None:intergenic |
CATTAACAGCTTCAGATCTT+AGG | 0.270045 | 1:+19697324 | None:intergenic |
AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1:-19698164 | MsG0180001342.01.T01:CDS |
TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1:-19698077 | MsG0180001342.01.T01:CDS |
TTAATGGAACCACAACAATA+AGG | 0.298328 | 1:-19697131 | MsG0180001342.01.T01:CDS |
GTGTTTGATGTTTCAATTGT+AGG | 0.300485 | 1:-19695886 | MsG0180001342.01.T01:CDS |
CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1:-19698006 | MsG0180001342.01.T01:CDS |
TTAGGAAACTTAAGGAATAT+AGG | 0.318222 | 1:+19698126 | None:intergenic |
ATAGTAACATTGAATGAAAT+TGG | 0.319993 | 1:+19696961 | None:intergenic |
AGAAAACCTAGTGATTTCTT+TGG | 0.323706 | 1:+19696913 | None:intergenic |
AGAGCAATACCCTTTACTTT+TGG | 0.331691 | 1:+19696722 | None:intergenic |
CCTAGTGATTTCTTTGGCTT+TGG | 0.332979 | 1:+19696919 | None:intergenic |
CTGGTCCTTTGAGTTTGCTT+TGG | 0.341746 | 1:+19697742 | None:intergenic |
TAGGAAACTTAAGGAATATA+GGG | 0.346499 | 1:+19698127 | None:intergenic |
TGTTCTCTTGAAAACTCATT+TGG | 0.346666 | 1:+19697165 | None:intergenic |
AATATCTTGGAGTTGAAAAT+GGG | 0.359463 | 1:-19696054 | MsG0180001342.01.T01:CDS |
ACTTTCTTCACCTTCTTCAA+TGG | 0.380996 | 1:+19697804 | None:intergenic |
TCATGATTCATAAACTCCTT+TGG | 0.383485 | 1:+19696078 | None:intergenic |
TAATGGAACCACAACAATAA+GGG | 0.391268 | 1:-19697130 | MsG0180001342.01.T01:CDS |
TATGAATCATGAAAATATCT+TGG | 0.394934 | 1:-19696067 | MsG0180001342.01.T01:CDS |
CAACACCGTTAGGAAACTTA+AGG | 0.403140 | 1:+19698118 | None:intergenic |
ATAGTTTATTTCTAAAGTAT+TGG | 0.406626 | 1:+19697951 | None:intergenic |
CCTTAAAGAAGCACAGCTAA+TGG | 0.407485 | 1:+19695856 | None:intergenic |
GTGGTGGATGGAAAATATTC+AGG | 0.420444 | 1:-19697041 | MsG0180001342.01.T01:CDS |
AAAGAATGCAAAGTGGAGAT+TGG | 0.431700 | 1:-19695949 | MsG0180001342.01.T01:CDS |
AAATATTATGAGAGTCTTTG+TGG | 0.437608 | 1:-19696006 | MsG0180001342.01.T01:CDS |
AGTCTTTGTGGCTGTAAGTT+CGG | 0.438865 | 1:-19695994 | MsG0180001342.01.T01:CDS |
AAGATGATCCTATGAAAATC+TGG | 0.438926 | 1:+19698331 | None:intergenic |
CAAACTCAAAGGACCAGAAA+TGG | 0.451853 | 1:-19697736 | MsG0180001342.01.T01:CDS |
TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1:-19698003 | MsG0180001342.01.T01:CDS |
AGGAGCCATCCAAAAGTAAA+GGG | 0.477165 | 1:-19696731 | MsG0180001342.01.T01:intron |
TAGGAGCCATCCAAAAGTAA+AGG | 0.478853 | 1:-19696732 | MsG0180001342.01.T01:CDS |
ATTACCAACCCTTATTGTTG+TGG | 0.480026 | 1:+19697122 | None:intergenic |
CAAAGTGGCCATGGTAAAGA+AGG | 0.488314 | 1:-19697357 | MsG0180001342.01.T01:CDS |
TGAAAATGGGGAGAAAATCA+TGG | 0.492046 | 1:-19696041 | MsG0180001342.01.T01:CDS |
TGACATTATAACTTCAAAAG+AGG | 0.495408 | 1:+19697295 | None:intergenic |
TGTGGCTGTAAGTTCGGTAA+AGG | 0.504977 | 1:-19695988 | MsG0180001342.01.T01:CDS |
GCTGTAAGTTCGGTAAAGGT+TGG | 0.518813 | 1:-19695984 | MsG0180001342.01.T01:CDS |
AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1:+19698024 | None:intergenic |
AATGGCAAGAGAAAATTCTC+AGG | 0.523324 | 1:-19697718 | MsG0180001342.01.T01:intron |
GACATTATAACTTCAAAAGA+GGG | 0.525934 | 1:+19697296 | None:intergenic |
AAGACATTGGAGGAACATCT+AGG | 0.526190 | 1:-19696751 | MsG0180001342.01.T01:CDS |
GAAGGAGCACAAGACATTCA+AGG | 0.537945 | 1:-19696329 | MsG0180001342.01.T01:CDS |
AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1:-19697925 | MsG0180001342.01.T01:CDS |
GATGAGGAAGCCATTGAAGA+AGG | 0.544836 | 1:-19697814 | MsG0180001342.01.T01:CDS |
CCAAAGCCAAAGAAATCACT+AGG | 0.556666 | 1:-19696919 | MsG0180001342.01.T01:intron |
GTTGTAAAGAAGCAAGACAT+TGG | 0.558494 | 1:-19696764 | MsG0180001342.01.T01:CDS |
CAATAAGGGTTGGTAATGAA+AGG | 0.558627 | 1:-19697116 | MsG0180001342.01.T01:CDS |
TACAGAAGGTCGTGATGTGA+AGG | 0.563378 | 1:-19696347 | MsG0180001342.01.T01:intron |
AAGTGATGAATCAAGTGATG+AGG | 0.567308 | 1:-19697830 | MsG0180001342.01.T01:CDS |
AGGTAGTAACAAAGTGGCCA+TGG | 0.577811 | 1:-19697366 | MsG0180001342.01.T01:CDS |
AATATTGTATGGGTGGTGGA+TGG | 0.587908 | 1:-19697053 | MsG0180001342.01.T01:CDS |
GTAAATTTGAGATGATTCAA+CGG | 0.588165 | 1:-19696987 | MsG0180001342.01.T01:CDS |
GGTGCTGAAGACACAGAAGA+AGG | 0.588176 | 1:-19697904 | MsG0180001342.01.T01:CDS |
ATATTCCTTAAGTTTCCTAA+CGG | 0.590322 | 1:-19698123 | MsG0180001342.01.T01:CDS |
GAGTAATGAGAGTTCAGATG+AGG | 0.591415 | 1:-19697773 | MsG0180001342.01.T01:CDS |
GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 1:-19698175 | MsG0180001342.01.T01:CDS |
GTATCTGCAGTGTGTACCAA+AGG | 0.598126 | 1:-19696094 | MsG0180001342.01.T01:intron |
GTAAAGAAGCAAGACATTGG+AGG | 0.602206 | 1:-19696761 | MsG0180001342.01.T01:CDS |
ACTTACAAAGAAATAGCCAT+TGG | 0.605595 | 1:+19697262 | None:intergenic |
ATGTCACAATCTTACGCCAA+TGG | 0.605717 | 1:-19697278 | MsG0180001342.01.T01:CDS |
GGTTGGTAATGAAAGGAGTG+TGG | 0.605745 | 1:-19697109 | MsG0180001342.01.T01:CDS |
GGAACCACAACAATAAGGGT+TGG | 0.608476 | 1:-19697126 | MsG0180001342.01.T01:CDS |
TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1:-19698159 | MsG0180001342.01.T01:CDS |
ATTCATGAAAGAATGCAAAG+TGG | 0.625279 | 1:-19695956 | MsG0180001342.01.T01:CDS |
TTTCGTGAAGAACAAAACCC+CGG | 0.628138 | 1:-19696305 | MsG0180001342.01.T01:intron |
ATATCTTGGAGTTGAAAATG+GGG | 0.639227 | 1:-19696053 | MsG0180001342.01.T01:CDS |
AAATACCAAAGCAAACTCAA+AGG | 0.654830 | 1:-19697747 | MsG0180001342.01.T01:CDS |
GGAGTGTGGAAGTGAGTGTG+AGG | 0.659449 | 1:-19697095 | MsG0180001342.01.T01:CDS |
CTTGGCAGGTAGTAACAAAG+TGG | 0.671173 | 1:-19697372 | MsG0180001342.01.T01:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATATTTGTAACTTTTAATT+TGG | - | Chr1:19697553-19697572 | MsG0180001342.01.T01:intron | 10.0% |
!!! | CAAATATATCTAAATTTTTT+GGG | - | Chr1:19697789-19697808 | MsG0180001342.01.T01:CDS | 10.0% |
!!! | TCAAATATATCTAAATTTTT+TGG | - | Chr1:19697788-19697807 | MsG0180001342.01.T01:CDS | 10.0% |
!! | AAACTTATGAATGATTTATA+AGG | - | Chr1:19697581-19697600 | MsG0180001342.01.T01:intron | 15.0% |
!! | ATTTGAATAGATTTATAGTT+AGG | + | Chr1:19697774-19697793 | None:intergenic | 15.0% |
!! | TAAAAAATATTTCAATTCAC+AGG | + | Chr1:19697657-19697676 | None:intergenic | 15.0% |
!! | TTTATGTAATTATATCTTAC+CGG | + | Chr1:19697924-19697943 | None:intergenic | 15.0% |
!!! | AAATGTGATTTTTTTTTTGT+AGG | - | Chr1:19696697-19696716 | MsG0180001342.01.T01:intron | 15.0% |
!!! | ATAGTTTATTTCTAAAGTAT+TGG | + | Chr1:19696259-19696278 | None:intergenic | 15.0% |
!!! | ATATTTGGTTTCAAAAAAAT+TGG | - | Chr1:19696145-19696164 | MsG0180001342.01.T01:intron | 15.0% |
!!! | TATTTGGTTTCAAAAAAATT+GGG | - | Chr1:19696146-19696165 | MsG0180001342.01.T01:intron | 15.0% |
!!! | TATTTTAAGGTTAAGATATT+TGG | - | Chr1:19696231-19696250 | MsG0180001342.01.T01:intron | 15.0% |
!!! | TGTTGAACAAAAAATATTTT+GGG | - | Chr1:19696107-19696126 | MsG0180001342.01.T01:intron | 15.0% |
!!! | TTAGATTTTATTATTGTAGA+GGG | - | Chr1:19697524-19697543 | MsG0180001342.01.T01:intron | 15.0% |
!!! | TTATTTTAAGAGTTATTGAA+TGG | - | Chr1:19696591-19696610 | MsG0180001342.01.T01:intron | 15.0% |
!!! | TTCTTTCTTTCTTTTTTATT+TGG | - | Chr1:19697313-19697332 | MsG0180001342.01.T01:CDS | 15.0% |
!!! | TTTAGATTTTATTATTGTAG+AGG | - | Chr1:19697523-19697542 | MsG0180001342.01.T01:intron | 15.0% |
!! | ATAGTAACATTGAATGAAAT+TGG | + | Chr1:19697249-19697268 | None:intergenic | 20.0% |
!! | TACAAACAAAAATATTAGTG+AGG | + | Chr1:19698096-19698115 | None:intergenic | 20.0% |
!! | TATGAATCATGAAAATATCT+TGG | - | Chr1:19698140-19698159 | MsG0180001342.01.T01:CDS | 20.0% |
!! | TTATGTAATTATATCTTACC+GGG | + | Chr1:19697923-19697942 | None:intergenic | 20.0% |
!!! | AATATATTCCAGATTTTCAT+AGG | - | Chr1:19695868-19695887 | MsG0180001342.01.T01:CDS | 20.0% |
!!! | GTGTTGAACAAAAAATATTT+TGG | - | Chr1:19696106-19696125 | MsG0180001342.01.T01:intron | 20.0% |
! | AAATAGTTAATGCCTAAACT+TGG | - | Chr1:19696817-19696836 | MsG0180001342.01.T01:intron | 25.0% |
! | AAATATCTTGGAGTTGAAAA+TGG | - | Chr1:19698152-19698171 | MsG0180001342.01.T01:CDS | 25.0% |
! | AAATATTATGAGAGTCTTTG+TGG | - | Chr1:19698201-19698220 | MsG0180001342.01.T01:intron | 25.0% |
! | AAGAGATATCCATATTTGAA+AGG | + | Chr1:19696186-19696205 | None:intergenic | 25.0% |
! | AATATCTTGGAGTTGAAAAT+GGG | - | Chr1:19698153-19698172 | MsG0180001342.01.T01:CDS | 25.0% |
! | AATTGAACGAAAGTTAGTTA+TGG | + | Chr1:19697978-19697997 | None:intergenic | 25.0% |
! | ACCCAGAAAAAATATTGTAT+GGG | - | Chr1:19697144-19697163 | MsG0180001342.01.T01:CDS | 25.0% |
! | AGAAATATGTGGAGAAATAT+TGG | - | Chr1:19696043-19696062 | MsG0180001342.01.T01:CDS | 25.0% |
! | AGGTTAAAAGTTAATAGAGT+GGG | + | Chr1:19698036-19698055 | None:intergenic | 25.0% |
! | ATATTCCTTAAGTTTCCTAA+CGG | - | Chr1:19696084-19696103 | MsG0180001342.01.T01:CDS | 25.0% |
! | ATGACAAGGTTATAAAAAAG+GGG | - | Chr1:19697403-19697422 | MsG0180001342.01.T01:intron | 25.0% |
! | ATTGAACGAAAGTTAGTTAT+GGG | + | Chr1:19697977-19697996 | None:intergenic | 25.0% |
! | CATGACAAGGTTATAAAAAA+GGG | - | Chr1:19697402-19697421 | MsG0180001342.01.T01:intron | 25.0% |
! | CTCTTAACTTTCAAATTCAT+TGG | - | Chr1:19696201-19696220 | MsG0180001342.01.T01:intron | 25.0% |
! | GACATTATAACTTCAAAAGA+GGG | + | Chr1:19696914-19696933 | None:intergenic | 25.0% |
! | TAAAAGAAGAAACTGAAAAC+TGG | + | Chr1:19697743-19697762 | None:intergenic | 25.0% |
! | TACCCAGAAAAAATATTGTA+TGG | - | Chr1:19697143-19697162 | MsG0180001342.01.T01:CDS | 25.0% |
! | TAGGAAACTTAAGGAATATA+GGG | + | Chr1:19696083-19696102 | None:intergenic | 25.0% |
! | TATGTAATTATATCTTACCG+GGG | + | Chr1:19697922-19697941 | None:intergenic | 25.0% |
! | TATTTCTCCACATATTTCTT+TGG | + | Chr1:19696042-19696061 | None:intergenic | 25.0% |
! | TGACATTATAACTTCAAAAG+AGG | + | Chr1:19696915-19696934 | None:intergenic | 25.0% |
! | TTAACTTTCAAATTCATTGG+TGG | - | Chr1:19696204-19696223 | MsG0180001342.01.T01:intron | 25.0% |
! | TTAGGAAACTTAAGGAATAT+AGG | + | Chr1:19696084-19696103 | None:intergenic | 25.0% |
!! | CTTTTAACCTCTAATGTATA+AGG | - | Chr1:19698046-19698065 | MsG0180001342.01.T01:CDS | 25.0% |
!! | GAACACTTGAAAGATTTTAA+TGG | - | Chr1:19697060-19697079 | MsG0180001342.01.T01:CDS | 25.0% |
!! | GTAAATTTGAGATGATTCAA+CGG | - | Chr1:19697220-19697239 | MsG0180001342.01.T01:intron | 25.0% |
!!! | AATATCAAATCAGTTGATGA+AGG | - | Chr1:19696282-19696301 | MsG0180001342.01.T01:intron | 25.0% |
!!! | ACCCATACAATATTTTTTCT+GGG | + | Chr1:19697148-19697167 | None:intergenic | 25.0% |
!!! | TGAACAAAAAATATTTTGGG+TGG | - | Chr1:19696110-19696129 | MsG0180001342.01.T01:intron | 25.0% |
!!! | TTCATCAACTGATTTGATAT+TGG | + | Chr1:19696283-19696302 | None:intergenic | 25.0% |
!!! | TTTTTTTGTTATCCATGACA+AGG | - | Chr1:19697389-19697408 | MsG0180001342.01.T01:intron | 25.0% |
AAAAAATATTGTATGGGTGG+TGG | - | Chr1:19697150-19697169 | MsG0180001342.01.T01:CDS | 30.0% | |
AAATACCAAAGCAAACTCAA+AGG | - | Chr1:19696460-19696479 | MsG0180001342.01.T01:intron | 30.0% | |
AAGATGATCCTATGAAAATC+TGG | + | Chr1:19695879-19695898 | None:intergenic | 30.0% | |
ACTTACAAAGAAATAGCCAT+TGG | + | Chr1:19696948-19696967 | None:intergenic | 30.0% | |
AGAAAACCTAGTGATTTCTT+TGG | + | Chr1:19697297-19697316 | None:intergenic | 30.0% | |
ATATCTTGGAGTTGAAAATG+GGG | - | Chr1:19698154-19698173 | MsG0180001342.01.T01:CDS | 30.0% | |
ATTCATGAAAGAATGCAAAG+TGG | - | Chr1:19698251-19698270 | MsG0180001342.01.T01:intron | 30.0% | |
CAGAAAAAATATTGTATGGG+TGG | - | Chr1:19697147-19697166 | MsG0180001342.01.T01:CDS | 30.0% | |
CCATGACAAGGTTATAAAAA+AGG | - | Chr1:19697401-19697420 | MsG0180001342.01.T01:intron | 30.0% | |
GAGGTTAAAAGTTAATAGAG+TGG | + | Chr1:19698037-19698056 | None:intergenic | 30.0% | |
GTGTTTGATGTTTCAATTGT+AGG | - | Chr1:19698321-19698340 | MsG0180001342.01.T01:CDS | 30.0% | |
TAAACCATTACTTGAAACAG+TGG | - | Chr1:19697016-19697035 | MsG0180001342.01.T01:CDS | 30.0% | |
TAATGGAACCACAACAATAA+GGG | - | Chr1:19697077-19697096 | MsG0180001342.01.T01:CDS | 30.0% | |
TATGTGGAGAAATATTGGAA+AGG | - | Chr1:19696048-19696067 | MsG0180001342.01.T01:CDS | 30.0% | |
TCATGATTCATAAACTCCTT+TGG | + | Chr1:19698132-19698151 | None:intergenic | 30.0% | |
TGTTCTCTTGAAAACTCATT+TGG | + | Chr1:19697045-19697064 | None:intergenic | 30.0% | |
TTAACCTCTAATGTATAAGG+TGG | - | Chr1:19698049-19698068 | MsG0180001342.01.T01:CDS | 30.0% | |
TTAATGGAACCACAACAATA+AGG | - | Chr1:19697076-19697095 | MsG0180001342.01.T01:CDS | 30.0% | |
TTGAATTTCTTTGTTGCAGA+GGG | - | Chr1:19696014-19696033 | MsG0180001342.01.T01:CDS | 30.0% | |
TTTGAATTTCTTTGTTGCAG+AGG | - | Chr1:19696013-19696032 | MsG0180001342.01.T01:CDS | 30.0% | |
TTTGCAAAGCCTTTCAAATA+TGG | - | Chr1:19696174-19696193 | MsG0180001342.01.T01:intron | 30.0% | |
! | AGAGTTATTGAATGGTTTGT+TGG | - | Chr1:19696599-19696618 | MsG0180001342.01.T01:intron | 30.0% |
! | GTTGGAATTTTATGTCTGAA+AGG | - | Chr1:19696617-19696636 | MsG0180001342.01.T01:intron | 30.0% |
!! | CATTGGTGGATCATATTTTA+AGG | - | Chr1:19696218-19696237 | MsG0180001342.01.T01:intron | 30.0% |
!!! | ATTCTCAGGTTGATCTTTTT+TGG | - | Chr1:19696503-19696522 | MsG0180001342.01.T01:intron | 30.0% |
!!! | ATTTTTTGTTCAACACCGTT+AGG | + | Chr1:19696102-19696121 | None:intergenic | 30.0% |
!!! | CACCCATACAATATTTTTTC+TGG | + | Chr1:19697149-19697168 | None:intergenic | 30.0% |
!!! | CCTTTTTTATAACCTTGTCA+TGG | + | Chr1:19697404-19697423 | None:intergenic | 30.0% |
!!! | GATCTTTTTTGGGTAGATTT+AGG | - | Chr1:19696514-19696533 | MsG0180001342.01.T01:intron | 30.0% |
!!! | TTCTCAGGTTGATCTTTTTT+GGG | - | Chr1:19696504-19696523 | MsG0180001342.01.T01:intron | 30.0% |
AAAGAATGCAAAGTGGAGAT+TGG | - | Chr1:19698258-19698277 | MsG0180001342.01.T01:intron | 35.0% | |
AAGTGATGAATCAAGTGATG+AGG | - | Chr1:19696377-19696396 | MsG0180001342.01.T01:intron | 35.0% | |
AATGGCAAGAGAAAATTCTC+AGG | - | Chr1:19696489-19696508 | MsG0180001342.01.T01:intron | 35.0% | |
ACTTTCTTCACCTTCTTCAA+TGG | + | Chr1:19696406-19696425 | None:intergenic | 35.0% | |
ATTACCAACCCTTATTGTTG+TGG | + | Chr1:19697088-19697107 | None:intergenic | 35.0% | |
CATTAACAGCTTCAGATCTT+AGG | + | Chr1:19696886-19696905 | None:intergenic | 35.0% | |
GTTGTAAAGAAGCAAGACAT+TGG | - | Chr1:19697443-19697462 | MsG0180001342.01.T01:intron | 35.0% | |
TATAAAAAAGGGGTCTCTTG+TGG | - | Chr1:19697413-19697432 | MsG0180001342.01.T01:intron | 35.0% | |
TGAAAATGGGGAGAAAATCA+TGG | - | Chr1:19698166-19698185 | MsG0180001342.01.T01:CDS | 35.0% | |
TGGAGAGTAATGGTGATATT+TGG | - | Chr1:19696130-19696149 | MsG0180001342.01.T01:intron | 35.0% | |
TGTGTTTATGCATGTACAGA+AGG | - | Chr1:19697846-19697865 | MsG0180001342.01.T01:CDS | 35.0% | |
! | AGAGCAATACCCTTTACTTT+TGG | + | Chr1:19697488-19697507 | None:intergenic | 35.0% |
! | AGTGGGATTAACTTGACTAA+CGG | + | Chr1:19698019-19698038 | None:intergenic | 35.0% |
! | GTATCCACTGTTTCAAGTAA+TGG | + | Chr1:19697023-19697042 | None:intergenic | 35.0% |
!! | ATATTTTGGGTGGAGAGTAA+TGG | - | Chr1:19696120-19696139 | MsG0180001342.01.T01:intron | 35.0% |
!! | CAATAAGGGTTGGTAATGAA+AGG | - | Chr1:19697091-19697110 | MsG0180001342.01.T01:CDS | 35.0% |
!! | CAATACCCTTTACTTTTGGA+TGG | + | Chr1:19697484-19697503 | None:intergenic | 35.0% |
!! | GAATTTTCTCTTGCCATTTC+TGG | + | Chr1:19696487-19696506 | None:intergenic | 35.0% |
!! | TTTTCTAGCCTTCTTTACCA+TGG | + | Chr1:19696861-19696880 | None:intergenic | 35.0% |
AAGACATTGGAGGAACATCT+AGG | - | Chr1:19697456-19697475 | MsG0180001342.01.T01:intron | 40.0% | |
AGGAGCCATCCAAAAGTAAA+GGG | - | Chr1:19697476-19697495 | MsG0180001342.01.T01:intron | 40.0% | |
AGTCTTTGTGGCTGTAAGTT+CGG | - | Chr1:19698213-19698232 | MsG0180001342.01.T01:intron | 40.0% | |
AGTTAATGCCTAAACTTGGC+AGG | - | Chr1:19696821-19696840 | MsG0180001342.01.T01:intron | 40.0% | |
ATGTCACAATCTTACGCCAA+TGG | - | Chr1:19696929-19696948 | MsG0180001342.01.T01:CDS | 40.0% | |
CAAACTCAAAGGACCAGAAA+TGG | - | Chr1:19696471-19696490 | MsG0180001342.01.T01:intron | 40.0% | |
CAACACCGTTAGGAAACTTA+AGG | + | Chr1:19696092-19696111 | None:intergenic | 40.0% | |
CCAAAGCCAAAGAAATCACT+AGG | - | Chr1:19697288-19697307 | MsG0180001342.01.T01:CDS | 40.0% | |
GAGGGTTCCAAAGAAATATG+TGG | - | Chr1:19696032-19696051 | MsG0180001342.01.T01:CDS | 40.0% | |
GAGTAATGAGAGTTCAGATG+AGG | - | Chr1:19696434-19696453 | MsG0180001342.01.T01:intron | 40.0% | |
GTAAAGAAGCAAGACATTGG+AGG | - | Chr1:19697446-19697465 | MsG0180001342.01.T01:intron | 40.0% | |
GTGTCCACCTTATACATTAG+AGG | + | Chr1:19698056-19698075 | None:intergenic | 40.0% | |
TAGGAGCCATCCAAAAGTAA+AGG | - | Chr1:19697475-19697494 | MsG0180001342.01.T01:intron | 40.0% | |
TGTTACTACCTGCCAAGTTT+AGG | + | Chr1:19696832-19696851 | None:intergenic | 40.0% | |
TTTCGTGAAGAACAAAACCC+CGG | - | Chr1:19697902-19697921 | MsG0180001342.01.T01:CDS | 40.0% | |
! | CCTAGTGATTTCTTTGGCTT+TGG | + | Chr1:19697291-19697310 | None:intergenic | 40.0% |
!! | AATATTGTATGGGTGGTGGA+TGG | - | Chr1:19697154-19697173 | MsG0180001342.01.T01:CDS | 40.0% |
!! | GTGGTGGATGGAAAATATTC+AGG | - | Chr1:19697166-19697185 | MsG0180001342.01.T01:CDS | 40.0% |
!!! | CTTTGGCTTTGGTTCGTTTT+TGG | + | Chr1:19697280-19697299 | None:intergenic | 40.0% |
AGGTAGTAACAAAGTGGCCA+TGG | - | Chr1:19696841-19696860 | MsG0180001342.01.T01:intron | 45.0% | |
CAAAGTGGCCATGGTAAAGA+AGG | - | Chr1:19696850-19696869 | MsG0180001342.01.T01:intron | 45.0% | |
CTTGGCAGGTAGTAACAAAG+TGG | - | Chr1:19696835-19696854 | MsG0180001342.01.T01:intron | 45.0% | |
GATGAGGAAGCCATTGAAGA+AGG | - | Chr1:19696393-19696412 | MsG0180001342.01.T01:intron | 45.0% | |
GCTGTAAGTTCGGTAAAGGT+TGG | - | Chr1:19698223-19698242 | MsG0180001342.01.T01:intron | 45.0% | |
GGAACCACAACAATAAGGGT+TGG | - | Chr1:19697081-19697100 | MsG0180001342.01.T01:CDS | 45.0% | |
GTATCTGCAGTGTGTACCAA+AGG | - | Chr1:19698113-19698132 | MsG0180001342.01.T01:CDS | 45.0% | |
TACAGAAGGTCGTGATGTGA+AGG | - | Chr1:19697860-19697879 | MsG0180001342.01.T01:CDS | 45.0% | |
TGTGGCTGTAAGTTCGGTAA+AGG | - | Chr1:19698219-19698238 | MsG0180001342.01.T01:intron | 45.0% | |
! | CTGGTCCTTTGAGTTTGCTT+TGG | + | Chr1:19696468-19696487 | None:intergenic | 45.0% |
! | GAAGGAGCACAAGACATTCA+AGG | - | Chr1:19697878-19697897 | MsG0180001342.01.T01:CDS | 45.0% |
!! | GGTTGGTAATGAAAGGAGTG+TGG | - | Chr1:19697098-19697117 | MsG0180001342.01.T01:CDS | 45.0% |
!! | AAAAATAATAAATACTTAAT+TGG | - | Chr1:19696748-19696767 | MsG0180001342.01.T01:CDS | 5.0% |
! | GGTGCTGAAGACACAGAAGA+AGG | - | Chr1:19696303-19696322 | MsG0180001342.01.T01:intron | 50.0% |
GGAGTGTGGAAGTGAGTGTG+AGG | - | Chr1:19697112-19697131 | MsG0180001342.01.T01:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 19695858 | 19698371 | 19695858 | ID=MsG0180001342.01;Name=MsG0180001342.01 |
Chr1 | mRNA | 19695858 | 19698371 | 19695858 | ID=MsG0180001342.01.T01;Parent=MsG0180001342.01;Name=MsG0180001342.01.T01;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0.83|0.71|7|0|440 |
Chr1 | exon | 19698315 | 19698371 | 19698315 | ID=MsG0180001342.01.T01:exon:26036;Parent=MsG0180001342.01.T01 |
Chr1 | exon | 19697719 | 19698196 | 19697719 | ID=MsG0180001342.01.T01:exon:26035;Parent=MsG0180001342.01.T01 |
Chr1 | exon | 19697268 | 19697386 | 19697268 | ID=MsG0180001342.01.T01:exon:26034;Parent=MsG0180001342.01.T01 |
Chr1 | exon | 19696920 | 19697193 | 19696920 | ID=MsG0180001342.01.T01:exon:26033;Parent=MsG0180001342.01.T01 |
Chr1 | exon | 19696732 | 19696818 | 19696732 | ID=MsG0180001342.01.T01:exon:26032;Parent=MsG0180001342.01.T01 |
Chr1 | exon | 19696306 | 19696364 | 19696306 | ID=MsG0180001342.01.T01:exon:26031;Parent=MsG0180001342.01.T01 |
Chr1 | exon | 19695858 | 19696106 | 19695858 | ID=MsG0180001342.01.T01:exon:26030;Parent=MsG0180001342.01.T01 |
Chr1 | CDS | 19698315 | 19698371 | 19698315 | ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01 |
Chr1 | CDS | 19697719 | 19698196 | 19697719 | ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01 |
Chr1 | CDS | 19697268 | 19697386 | 19697268 | ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01 |
Chr1 | CDS | 19696920 | 19697193 | 19696920 | ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01 |
Chr1 | CDS | 19696732 | 19696818 | 19696732 | ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01 |
Chr1 | CDS | 19696306 | 19696364 | 19696306 | ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01 |
Chr1 | CDS | 19695858 | 19696106 | 19695858 | ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01 |
Gene Sequence |
Protein sequence |