AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001342.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001342.01.T01 MTR_1g035570 71.652 448 70 5 1 438 1 401 0.0 602
MsG0180001342.01.T01 MTR_1g035490 67.702 322 74 7 131 433 20 330 3.82e-132 384
MsG0180001342.01.T01 MTR_1g035640 46.092 499 168 11 1 432 1 465 5.15e-127 376
MsG0180001342.01.T01 MTR_1g035620 43.363 452 190 12 1 430 1 408 2.76e-108 326
MsG0180001342.01.T01 MTR_1g050845 41.905 420 166 12 1 398 1 364 4.69e-85 277
MsG0180001342.01.T01 MTR_6g061070 35.333 450 253 12 14 431 27 470 9.81e-76 244
MsG0180001342.01.T01 MTR_1g035650 42.857 231 91 5 1 218 1 203 2.63e-48 164
MsG0180001342.01.T01 MTR_8g103940 27.115 461 277 14 14 430 48 493 8.82e-39 146
MsG0180001342.01.T01 MTR_1g108780 27.409 467 261 16 20 430 12 456 3.15e-38 144
MsG0180001342.01.T01 MTR_7g050710 31.988 322 180 11 9 308 13 317 1.26e-34 131
MsG0180001342.01.T01 MTR_5g044670 30.132 302 179 7 14 302 25 307 8.93e-34 129
MsG0180001342.01.T01 MTR_7g050560 32.877 292 166 9 14 298 22 290 8.20e-33 126
MsG0180001342.01.T01 MTR_3g098790 31.741 293 177 8 14 298 22 299 1.11e-32 126
MsG0180001342.01.T01 MTR_7g050590 31.959 291 173 9 21 298 2 280 6.96e-31 120
MsG0180001342.01.T01 MTR_1g035510 34.247 219 125 8 21 234 2 206 1.86e-29 115
MsG0180001342.01.T01 MTR_7g050720 31.230 317 197 14 1 298 1 315 3.99e-29 116
MsG0180001342.01.T01 MTR_7g050580 33.447 293 163 10 14 298 22 290 6.55e-29 115
MsG0180001342.01.T01 MTR_1g035480 48.246 114 56 2 14 127 26 136 1.81e-28 110
MsG0180001342.01.T01 MTR_3g061310 27.645 293 187 9 9 296 12 284 2.21e-27 110
MsG0180001342.01.T01 MTR_1g033740 42.735 117 64 2 14 130 31 144 1.28e-26 106
MsG0180001342.01.T01 MTR_3g061340 27.609 297 171 13 9 296 12 273 1.11e-25 105
MsG0180001342.01.T01 MTR_3g061350 26.351 296 186 8 9 296 12 283 1.81e-25 105
MsG0180001342.01.T01 MTR_1g035460 24.088 411 246 11 21 381 2 396 1.24e-24 105
MsG0180001342.01.T01 MTR_3g061320 25.256 293 188 8 9 296 12 278 3.78e-24 101
MsG0180001342.01.T01 MTR_1g035500 44.262 122 64 3 5 126 26 143 7.53e-24 98.6
MsG0180001342.01.T01 MTR_4g119990 27.362 307 193 9 9 296 15 310 1.27e-23 102
MsG0180001342.01.T01 MTR_3g061370 24.834 302 183 8 9 296 9 280 1.60e-23 100
MsG0180001342.01.T01 MTR_6g043890 26.690 281 185 7 13 284 23 291 1.28e-22 98.6
MsG0180001342.01.T01 MTR_1g035470 40.909 110 62 2 21 130 2 108 2.73e-22 92.8
MsG0180001342.01.T01 MTR_1g035520 26.582 316 199 8 5 296 76 382 4.68e-21 94.7
MsG0180001342.01.T01 MTR_1g035520 42.478 113 55 3 329 431 271 383 2.34e-17 84.0
MsG0180001342.01.T01 MTR_3g061290 37.815 119 68 3 9 123 12 128 3.09e-19 85.9
MsG0180001342.01.T01 MTR_3g061330 31.548 168 105 5 9 168 12 177 1.10e-18 85.5
MsG0180001342.01.T01 MTR_1g034210 26.027 365 199 13 6 303 4 364 2.31e-18 86.7
MsG0180001342.01.T01 MTR_3g005480 23.891 293 155 8 14 299 30 261 5.09e-14 72.4
MsG0180001342.01.T01 MTR_1g021270 23.659 317 191 10 17 286 27 339 5.75e-14 74.3
MsG0180001342.01.T01 MTR_4g068320 36.634 101 58 2 7 101 4 104 4.23e-13 71.2
MsG0180001342.01.T01 MTR_7g050640 40.541 111 56 4 3 103 5 115 6.21e-13 65.5
MsG0180001342.01.T01 MTR_1g034240 34.234 111 66 3 7 110 5 115 1.60e-12 69.3
MsG0180001342.01.T01 MTR_3g005490 23.208 293 160 8 14 301 30 262 3.61e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001342.01.T01 AT3G18990 26.023 342 200 10 7 301 4 339 5.25e-22 97.4
MsG0180001342.01.T01 AT3G18990 26.254 339 197 10 7 298 4 336 9.15e-22 96.3

Find 74 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTAGCTGTGCTTCTTTA+AGG 0.068553 1:-19695856 None:intergenic
TTTGCAAAGCCTTTCAAATA+TGG 0.180110 1:-19698033 MsG0180001342.01.T01:CDS
AAATATCTTGGAGTTGAAAA+TGG 0.201158 1:-19696055 MsG0180001342.01.T01:CDS
TATTTCTCCACATATTTCTT+TGG 0.248757 1:+19698168 None:intergenic
TTCATCAACTGATTTGATAT+TGG 0.261684 1:+19697927 None:intergenic
CATTAACAGCTTCAGATCTT+AGG 0.270045 1:+19697324 None:intergenic
AGAAATATGTGGAGAAATAT+TGG 0.281812 1:-19698164 MsG0180001342.01.T01:CDS
TGGAGAGTAATGGTGATATT+TGG 0.287546 1:-19698077 MsG0180001342.01.T01:CDS
TTAATGGAACCACAACAATA+AGG 0.298328 1:-19697131 MsG0180001342.01.T01:CDS
GTGTTTGATGTTTCAATTGT+AGG 0.300485 1:-19695886 MsG0180001342.01.T01:CDS
CTCTTAACTTTCAAATTCAT+TGG 0.314459 1:-19698006 MsG0180001342.01.T01:CDS
TTAGGAAACTTAAGGAATAT+AGG 0.318222 1:+19698126 None:intergenic
ATAGTAACATTGAATGAAAT+TGG 0.319993 1:+19696961 None:intergenic
AGAAAACCTAGTGATTTCTT+TGG 0.323706 1:+19696913 None:intergenic
AGAGCAATACCCTTTACTTT+TGG 0.331691 1:+19696722 None:intergenic
CCTAGTGATTTCTTTGGCTT+TGG 0.332979 1:+19696919 None:intergenic
CTGGTCCTTTGAGTTTGCTT+TGG 0.341746 1:+19697742 None:intergenic
TAGGAAACTTAAGGAATATA+GGG 0.346499 1:+19698127 None:intergenic
TGTTCTCTTGAAAACTCATT+TGG 0.346666 1:+19697165 None:intergenic
AATATCTTGGAGTTGAAAAT+GGG 0.359463 1:-19696054 MsG0180001342.01.T01:CDS
ACTTTCTTCACCTTCTTCAA+TGG 0.380996 1:+19697804 None:intergenic
TCATGATTCATAAACTCCTT+TGG 0.383485 1:+19696078 None:intergenic
TAATGGAACCACAACAATAA+GGG 0.391268 1:-19697130 MsG0180001342.01.T01:CDS
TATGAATCATGAAAATATCT+TGG 0.394934 1:-19696067 MsG0180001342.01.T01:CDS
CAACACCGTTAGGAAACTTA+AGG 0.403140 1:+19698118 None:intergenic
ATAGTTTATTTCTAAAGTAT+TGG 0.406626 1:+19697951 None:intergenic
CCTTAAAGAAGCACAGCTAA+TGG 0.407485 1:+19695856 None:intergenic
GTGGTGGATGGAAAATATTC+AGG 0.420444 1:-19697041 MsG0180001342.01.T01:CDS
AAAGAATGCAAAGTGGAGAT+TGG 0.431700 1:-19695949 MsG0180001342.01.T01:CDS
AAATATTATGAGAGTCTTTG+TGG 0.437608 1:-19696006 MsG0180001342.01.T01:CDS
AGTCTTTGTGGCTGTAAGTT+CGG 0.438865 1:-19695994 MsG0180001342.01.T01:CDS
AAGATGATCCTATGAAAATC+TGG 0.438926 1:+19698331 None:intergenic
CAAACTCAAAGGACCAGAAA+TGG 0.451853 1:-19697736 MsG0180001342.01.T01:CDS
TTAACTTTCAAATTCATTGG+TGG 0.475675 1:-19698003 MsG0180001342.01.T01:CDS
AGGAGCCATCCAAAAGTAAA+GGG 0.477165 1:-19696731 MsG0180001342.01.T01:intron
TAGGAGCCATCCAAAAGTAA+AGG 0.478853 1:-19696732 MsG0180001342.01.T01:CDS
ATTACCAACCCTTATTGTTG+TGG 0.480026 1:+19697122 None:intergenic
CAAAGTGGCCATGGTAAAGA+AGG 0.488314 1:-19697357 MsG0180001342.01.T01:CDS
TGAAAATGGGGAGAAAATCA+TGG 0.492046 1:-19696041 MsG0180001342.01.T01:CDS
TGACATTATAACTTCAAAAG+AGG 0.495408 1:+19697295 None:intergenic
TGTGGCTGTAAGTTCGGTAA+AGG 0.504977 1:-19695988 MsG0180001342.01.T01:CDS
GCTGTAAGTTCGGTAAAGGT+TGG 0.518813 1:-19695984 MsG0180001342.01.T01:CDS
AAGAGATATCCATATTTGAA+AGG 0.520085 1:+19698024 None:intergenic
AATGGCAAGAGAAAATTCTC+AGG 0.523324 1:-19697718 MsG0180001342.01.T01:intron
GACATTATAACTTCAAAAGA+GGG 0.525934 1:+19697296 None:intergenic
AAGACATTGGAGGAACATCT+AGG 0.526190 1:-19696751 MsG0180001342.01.T01:CDS
GAAGGAGCACAAGACATTCA+AGG 0.537945 1:-19696329 MsG0180001342.01.T01:CDS
AATATCAAATCAGTTGATGA+AGG 0.540855 1:-19697925 MsG0180001342.01.T01:CDS
GATGAGGAAGCCATTGAAGA+AGG 0.544836 1:-19697814 MsG0180001342.01.T01:CDS
CCAAAGCCAAAGAAATCACT+AGG 0.556666 1:-19696919 MsG0180001342.01.T01:intron
GTTGTAAAGAAGCAAGACAT+TGG 0.558494 1:-19696764 MsG0180001342.01.T01:CDS
CAATAAGGGTTGGTAATGAA+AGG 0.558627 1:-19697116 MsG0180001342.01.T01:CDS
TACAGAAGGTCGTGATGTGA+AGG 0.563378 1:-19696347 MsG0180001342.01.T01:intron
AAGTGATGAATCAAGTGATG+AGG 0.567308 1:-19697830 MsG0180001342.01.T01:CDS
AGGTAGTAACAAAGTGGCCA+TGG 0.577811 1:-19697366 MsG0180001342.01.T01:CDS
AATATTGTATGGGTGGTGGA+TGG 0.587908 1:-19697053 MsG0180001342.01.T01:CDS
GTAAATTTGAGATGATTCAA+CGG 0.588165 1:-19696987 MsG0180001342.01.T01:CDS
GGTGCTGAAGACACAGAAGA+AGG 0.588176 1:-19697904 MsG0180001342.01.T01:CDS
ATATTCCTTAAGTTTCCTAA+CGG 0.590322 1:-19698123 MsG0180001342.01.T01:CDS
GAGTAATGAGAGTTCAGATG+AGG 0.591415 1:-19697773 MsG0180001342.01.T01:CDS
GAGGGTTCCAAAGAAATATG+TGG 0.594786 1:-19698175 MsG0180001342.01.T01:CDS
GTATCTGCAGTGTGTACCAA+AGG 0.598126 1:-19696094 MsG0180001342.01.T01:intron
GTAAAGAAGCAAGACATTGG+AGG 0.602206 1:-19696761 MsG0180001342.01.T01:CDS
ACTTACAAAGAAATAGCCAT+TGG 0.605595 1:+19697262 None:intergenic
ATGTCACAATCTTACGCCAA+TGG 0.605717 1:-19697278 MsG0180001342.01.T01:CDS
GGTTGGTAATGAAAGGAGTG+TGG 0.605745 1:-19697109 MsG0180001342.01.T01:CDS
GGAACCACAACAATAAGGGT+TGG 0.608476 1:-19697126 MsG0180001342.01.T01:CDS
TATGTGGAGAAATATTGGAA+AGG 0.617787 1:-19698159 MsG0180001342.01.T01:CDS
ATTCATGAAAGAATGCAAAG+TGG 0.625279 1:-19695956 MsG0180001342.01.T01:CDS
TTTCGTGAAGAACAAAACCC+CGG 0.628138 1:-19696305 MsG0180001342.01.T01:intron
ATATCTTGGAGTTGAAAATG+GGG 0.639227 1:-19696053 MsG0180001342.01.T01:CDS
AAATACCAAAGCAAACTCAA+AGG 0.654830 1:-19697747 MsG0180001342.01.T01:CDS
GGAGTGTGGAAGTGAGTGTG+AGG 0.659449 1:-19697095 MsG0180001342.01.T01:CDS
CTTGGCAGGTAGTAACAAAG+TGG 0.671173 1:-19697372 MsG0180001342.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTGTAACTTTTAATT+TGG - Chr1:19697553-19697572 MsG0180001342.01.T01:intron 10.0%
!!! CAAATATATCTAAATTTTTT+GGG - Chr1:19697789-19697808 MsG0180001342.01.T01:CDS 10.0%
!!! TCAAATATATCTAAATTTTT+TGG - Chr1:19697788-19697807 MsG0180001342.01.T01:CDS 10.0%
!! AAACTTATGAATGATTTATA+AGG - Chr1:19697581-19697600 MsG0180001342.01.T01:intron 15.0%
!! ATTTGAATAGATTTATAGTT+AGG + Chr1:19697774-19697793 None:intergenic 15.0%
!! TAAAAAATATTTCAATTCAC+AGG + Chr1:19697657-19697676 None:intergenic 15.0%
!! TTTATGTAATTATATCTTAC+CGG + Chr1:19697924-19697943 None:intergenic 15.0%
!!! AAATGTGATTTTTTTTTTGT+AGG - Chr1:19696697-19696716 MsG0180001342.01.T01:intron 15.0%
!!! ATAGTTTATTTCTAAAGTAT+TGG + Chr1:19696259-19696278 None:intergenic 15.0%
!!! ATATTTGGTTTCAAAAAAAT+TGG - Chr1:19696145-19696164 MsG0180001342.01.T01:intron 15.0%
!!! TATTTGGTTTCAAAAAAATT+GGG - Chr1:19696146-19696165 MsG0180001342.01.T01:intron 15.0%
!!! TATTTTAAGGTTAAGATATT+TGG - Chr1:19696231-19696250 MsG0180001342.01.T01:intron 15.0%
!!! TGTTGAACAAAAAATATTTT+GGG - Chr1:19696107-19696126 MsG0180001342.01.T01:intron 15.0%
!!! TTAGATTTTATTATTGTAGA+GGG - Chr1:19697524-19697543 MsG0180001342.01.T01:intron 15.0%
!!! TTATTTTAAGAGTTATTGAA+TGG - Chr1:19696591-19696610 MsG0180001342.01.T01:intron 15.0%
!!! TTCTTTCTTTCTTTTTTATT+TGG - Chr1:19697313-19697332 MsG0180001342.01.T01:CDS 15.0%
!!! TTTAGATTTTATTATTGTAG+AGG - Chr1:19697523-19697542 MsG0180001342.01.T01:intron 15.0%
!! ATAGTAACATTGAATGAAAT+TGG + Chr1:19697249-19697268 None:intergenic 20.0%
!! TACAAACAAAAATATTAGTG+AGG + Chr1:19698096-19698115 None:intergenic 20.0%
!! TATGAATCATGAAAATATCT+TGG - Chr1:19698140-19698159 MsG0180001342.01.T01:CDS 20.0%
!! TTATGTAATTATATCTTACC+GGG + Chr1:19697923-19697942 None:intergenic 20.0%
!!! AATATATTCCAGATTTTCAT+AGG - Chr1:19695868-19695887 MsG0180001342.01.T01:CDS 20.0%
!!! GTGTTGAACAAAAAATATTT+TGG - Chr1:19696106-19696125 MsG0180001342.01.T01:intron 20.0%
! AAATAGTTAATGCCTAAACT+TGG - Chr1:19696817-19696836 MsG0180001342.01.T01:intron 25.0%
! AAATATCTTGGAGTTGAAAA+TGG - Chr1:19698152-19698171 MsG0180001342.01.T01:CDS 25.0%
! AAATATTATGAGAGTCTTTG+TGG - Chr1:19698201-19698220 MsG0180001342.01.T01:intron 25.0%
! AAGAGATATCCATATTTGAA+AGG + Chr1:19696186-19696205 None:intergenic 25.0%
! AATATCTTGGAGTTGAAAAT+GGG - Chr1:19698153-19698172 MsG0180001342.01.T01:CDS 25.0%
! AATTGAACGAAAGTTAGTTA+TGG + Chr1:19697978-19697997 None:intergenic 25.0%
! ACCCAGAAAAAATATTGTAT+GGG - Chr1:19697144-19697163 MsG0180001342.01.T01:CDS 25.0%
! AGAAATATGTGGAGAAATAT+TGG - Chr1:19696043-19696062 MsG0180001342.01.T01:CDS 25.0%
! AGGTTAAAAGTTAATAGAGT+GGG + Chr1:19698036-19698055 None:intergenic 25.0%
! ATATTCCTTAAGTTTCCTAA+CGG - Chr1:19696084-19696103 MsG0180001342.01.T01:CDS 25.0%
! ATGACAAGGTTATAAAAAAG+GGG - Chr1:19697403-19697422 MsG0180001342.01.T01:intron 25.0%
! ATTGAACGAAAGTTAGTTAT+GGG + Chr1:19697977-19697996 None:intergenic 25.0%
! CATGACAAGGTTATAAAAAA+GGG - Chr1:19697402-19697421 MsG0180001342.01.T01:intron 25.0%
! CTCTTAACTTTCAAATTCAT+TGG - Chr1:19696201-19696220 MsG0180001342.01.T01:intron 25.0%
! GACATTATAACTTCAAAAGA+GGG + Chr1:19696914-19696933 None:intergenic 25.0%
! TAAAAGAAGAAACTGAAAAC+TGG + Chr1:19697743-19697762 None:intergenic 25.0%
! TACCCAGAAAAAATATTGTA+TGG - Chr1:19697143-19697162 MsG0180001342.01.T01:CDS 25.0%
! TAGGAAACTTAAGGAATATA+GGG + Chr1:19696083-19696102 None:intergenic 25.0%
! TATGTAATTATATCTTACCG+GGG + Chr1:19697922-19697941 None:intergenic 25.0%
! TATTTCTCCACATATTTCTT+TGG + Chr1:19696042-19696061 None:intergenic 25.0%
! TGACATTATAACTTCAAAAG+AGG + Chr1:19696915-19696934 None:intergenic 25.0%
! TTAACTTTCAAATTCATTGG+TGG - Chr1:19696204-19696223 MsG0180001342.01.T01:intron 25.0%
! TTAGGAAACTTAAGGAATAT+AGG + Chr1:19696084-19696103 None:intergenic 25.0%
!! CTTTTAACCTCTAATGTATA+AGG - Chr1:19698046-19698065 MsG0180001342.01.T01:CDS 25.0%
!! GAACACTTGAAAGATTTTAA+TGG - Chr1:19697060-19697079 MsG0180001342.01.T01:CDS 25.0%
!! GTAAATTTGAGATGATTCAA+CGG - Chr1:19697220-19697239 MsG0180001342.01.T01:intron 25.0%
!!! AATATCAAATCAGTTGATGA+AGG - Chr1:19696282-19696301 MsG0180001342.01.T01:intron 25.0%
!!! ACCCATACAATATTTTTTCT+GGG + Chr1:19697148-19697167 None:intergenic 25.0%
!!! TGAACAAAAAATATTTTGGG+TGG - Chr1:19696110-19696129 MsG0180001342.01.T01:intron 25.0%
!!! TTCATCAACTGATTTGATAT+TGG + Chr1:19696283-19696302 None:intergenic 25.0%
!!! TTTTTTTGTTATCCATGACA+AGG - Chr1:19697389-19697408 MsG0180001342.01.T01:intron 25.0%
AAAAAATATTGTATGGGTGG+TGG - Chr1:19697150-19697169 MsG0180001342.01.T01:CDS 30.0%
AAATACCAAAGCAAACTCAA+AGG - Chr1:19696460-19696479 MsG0180001342.01.T01:intron 30.0%
AAGATGATCCTATGAAAATC+TGG + Chr1:19695879-19695898 None:intergenic 30.0%
ACTTACAAAGAAATAGCCAT+TGG + Chr1:19696948-19696967 None:intergenic 30.0%
AGAAAACCTAGTGATTTCTT+TGG + Chr1:19697297-19697316 None:intergenic 30.0%
ATATCTTGGAGTTGAAAATG+GGG - Chr1:19698154-19698173 MsG0180001342.01.T01:CDS 30.0%
ATTCATGAAAGAATGCAAAG+TGG - Chr1:19698251-19698270 MsG0180001342.01.T01:intron 30.0%
CAGAAAAAATATTGTATGGG+TGG - Chr1:19697147-19697166 MsG0180001342.01.T01:CDS 30.0%
CCATGACAAGGTTATAAAAA+AGG - Chr1:19697401-19697420 MsG0180001342.01.T01:intron 30.0%
GAGGTTAAAAGTTAATAGAG+TGG + Chr1:19698037-19698056 None:intergenic 30.0%
GTGTTTGATGTTTCAATTGT+AGG - Chr1:19698321-19698340 MsG0180001342.01.T01:CDS 30.0%
TAAACCATTACTTGAAACAG+TGG - Chr1:19697016-19697035 MsG0180001342.01.T01:CDS 30.0%
TAATGGAACCACAACAATAA+GGG - Chr1:19697077-19697096 MsG0180001342.01.T01:CDS 30.0%
TATGTGGAGAAATATTGGAA+AGG - Chr1:19696048-19696067 MsG0180001342.01.T01:CDS 30.0%
TCATGATTCATAAACTCCTT+TGG + Chr1:19698132-19698151 None:intergenic 30.0%
TGTTCTCTTGAAAACTCATT+TGG + Chr1:19697045-19697064 None:intergenic 30.0%
TTAACCTCTAATGTATAAGG+TGG - Chr1:19698049-19698068 MsG0180001342.01.T01:CDS 30.0%
TTAATGGAACCACAACAATA+AGG - Chr1:19697076-19697095 MsG0180001342.01.T01:CDS 30.0%
TTGAATTTCTTTGTTGCAGA+GGG - Chr1:19696014-19696033 MsG0180001342.01.T01:CDS 30.0%
TTTGAATTTCTTTGTTGCAG+AGG - Chr1:19696013-19696032 MsG0180001342.01.T01:CDS 30.0%
TTTGCAAAGCCTTTCAAATA+TGG - Chr1:19696174-19696193 MsG0180001342.01.T01:intron 30.0%
! AGAGTTATTGAATGGTTTGT+TGG - Chr1:19696599-19696618 MsG0180001342.01.T01:intron 30.0%
! GTTGGAATTTTATGTCTGAA+AGG - Chr1:19696617-19696636 MsG0180001342.01.T01:intron 30.0%
!! CATTGGTGGATCATATTTTA+AGG - Chr1:19696218-19696237 MsG0180001342.01.T01:intron 30.0%
!!! ATTCTCAGGTTGATCTTTTT+TGG - Chr1:19696503-19696522 MsG0180001342.01.T01:intron 30.0%
!!! ATTTTTTGTTCAACACCGTT+AGG + Chr1:19696102-19696121 None:intergenic 30.0%
!!! CACCCATACAATATTTTTTC+TGG + Chr1:19697149-19697168 None:intergenic 30.0%
!!! CCTTTTTTATAACCTTGTCA+TGG + Chr1:19697404-19697423 None:intergenic 30.0%
!!! GATCTTTTTTGGGTAGATTT+AGG - Chr1:19696514-19696533 MsG0180001342.01.T01:intron 30.0%
!!! TTCTCAGGTTGATCTTTTTT+GGG - Chr1:19696504-19696523 MsG0180001342.01.T01:intron 30.0%
AAAGAATGCAAAGTGGAGAT+TGG - Chr1:19698258-19698277 MsG0180001342.01.T01:intron 35.0%
AAGTGATGAATCAAGTGATG+AGG - Chr1:19696377-19696396 MsG0180001342.01.T01:intron 35.0%
AATGGCAAGAGAAAATTCTC+AGG - Chr1:19696489-19696508 MsG0180001342.01.T01:intron 35.0%
ACTTTCTTCACCTTCTTCAA+TGG + Chr1:19696406-19696425 None:intergenic 35.0%
ATTACCAACCCTTATTGTTG+TGG + Chr1:19697088-19697107 None:intergenic 35.0%
CATTAACAGCTTCAGATCTT+AGG + Chr1:19696886-19696905 None:intergenic 35.0%
GTTGTAAAGAAGCAAGACAT+TGG - Chr1:19697443-19697462 MsG0180001342.01.T01:intron 35.0%
TATAAAAAAGGGGTCTCTTG+TGG - Chr1:19697413-19697432 MsG0180001342.01.T01:intron 35.0%
TGAAAATGGGGAGAAAATCA+TGG - Chr1:19698166-19698185 MsG0180001342.01.T01:CDS 35.0%
TGGAGAGTAATGGTGATATT+TGG - Chr1:19696130-19696149 MsG0180001342.01.T01:intron 35.0%
TGTGTTTATGCATGTACAGA+AGG - Chr1:19697846-19697865 MsG0180001342.01.T01:CDS 35.0%
! AGAGCAATACCCTTTACTTT+TGG + Chr1:19697488-19697507 None:intergenic 35.0%
! AGTGGGATTAACTTGACTAA+CGG + Chr1:19698019-19698038 None:intergenic 35.0%
! GTATCCACTGTTTCAAGTAA+TGG + Chr1:19697023-19697042 None:intergenic 35.0%
!! ATATTTTGGGTGGAGAGTAA+TGG - Chr1:19696120-19696139 MsG0180001342.01.T01:intron 35.0%
!! CAATAAGGGTTGGTAATGAA+AGG - Chr1:19697091-19697110 MsG0180001342.01.T01:CDS 35.0%
!! CAATACCCTTTACTTTTGGA+TGG + Chr1:19697484-19697503 None:intergenic 35.0%
!! GAATTTTCTCTTGCCATTTC+TGG + Chr1:19696487-19696506 None:intergenic 35.0%
!! TTTTCTAGCCTTCTTTACCA+TGG + Chr1:19696861-19696880 None:intergenic 35.0%
AAGACATTGGAGGAACATCT+AGG - Chr1:19697456-19697475 MsG0180001342.01.T01:intron 40.0%
AGGAGCCATCCAAAAGTAAA+GGG - Chr1:19697476-19697495 MsG0180001342.01.T01:intron 40.0%
AGTCTTTGTGGCTGTAAGTT+CGG - Chr1:19698213-19698232 MsG0180001342.01.T01:intron 40.0%
AGTTAATGCCTAAACTTGGC+AGG - Chr1:19696821-19696840 MsG0180001342.01.T01:intron 40.0%
ATGTCACAATCTTACGCCAA+TGG - Chr1:19696929-19696948 MsG0180001342.01.T01:CDS 40.0%
CAAACTCAAAGGACCAGAAA+TGG - Chr1:19696471-19696490 MsG0180001342.01.T01:intron 40.0%
CAACACCGTTAGGAAACTTA+AGG + Chr1:19696092-19696111 None:intergenic 40.0%
CCAAAGCCAAAGAAATCACT+AGG - Chr1:19697288-19697307 MsG0180001342.01.T01:CDS 40.0%
GAGGGTTCCAAAGAAATATG+TGG - Chr1:19696032-19696051 MsG0180001342.01.T01:CDS 40.0%
GAGTAATGAGAGTTCAGATG+AGG - Chr1:19696434-19696453 MsG0180001342.01.T01:intron 40.0%
GTAAAGAAGCAAGACATTGG+AGG - Chr1:19697446-19697465 MsG0180001342.01.T01:intron 40.0%
GTGTCCACCTTATACATTAG+AGG + Chr1:19698056-19698075 None:intergenic 40.0%
TAGGAGCCATCCAAAAGTAA+AGG - Chr1:19697475-19697494 MsG0180001342.01.T01:intron 40.0%
TGTTACTACCTGCCAAGTTT+AGG + Chr1:19696832-19696851 None:intergenic 40.0%
TTTCGTGAAGAACAAAACCC+CGG - Chr1:19697902-19697921 MsG0180001342.01.T01:CDS 40.0%
! CCTAGTGATTTCTTTGGCTT+TGG + Chr1:19697291-19697310 None:intergenic 40.0%
!! AATATTGTATGGGTGGTGGA+TGG - Chr1:19697154-19697173 MsG0180001342.01.T01:CDS 40.0%
!! GTGGTGGATGGAAAATATTC+AGG - Chr1:19697166-19697185 MsG0180001342.01.T01:CDS 40.0%
!!! CTTTGGCTTTGGTTCGTTTT+TGG + Chr1:19697280-19697299 None:intergenic 40.0%
AGGTAGTAACAAAGTGGCCA+TGG - Chr1:19696841-19696860 MsG0180001342.01.T01:intron 45.0%
CAAAGTGGCCATGGTAAAGA+AGG - Chr1:19696850-19696869 MsG0180001342.01.T01:intron 45.0%
CTTGGCAGGTAGTAACAAAG+TGG - Chr1:19696835-19696854 MsG0180001342.01.T01:intron 45.0%
GATGAGGAAGCCATTGAAGA+AGG - Chr1:19696393-19696412 MsG0180001342.01.T01:intron 45.0%
GCTGTAAGTTCGGTAAAGGT+TGG - Chr1:19698223-19698242 MsG0180001342.01.T01:intron 45.0%
GGAACCACAACAATAAGGGT+TGG - Chr1:19697081-19697100 MsG0180001342.01.T01:CDS 45.0%
GTATCTGCAGTGTGTACCAA+AGG - Chr1:19698113-19698132 MsG0180001342.01.T01:CDS 45.0%
TACAGAAGGTCGTGATGTGA+AGG - Chr1:19697860-19697879 MsG0180001342.01.T01:CDS 45.0%
TGTGGCTGTAAGTTCGGTAA+AGG - Chr1:19698219-19698238 MsG0180001342.01.T01:intron 45.0%
! CTGGTCCTTTGAGTTTGCTT+TGG + Chr1:19696468-19696487 None:intergenic 45.0%
! GAAGGAGCACAAGACATTCA+AGG - Chr1:19697878-19697897 MsG0180001342.01.T01:CDS 45.0%
!! GGTTGGTAATGAAAGGAGTG+TGG - Chr1:19697098-19697117 MsG0180001342.01.T01:CDS 45.0%
!! AAAAATAATAAATACTTAAT+TGG - Chr1:19696748-19696767 MsG0180001342.01.T01:CDS 5.0%
! GGTGCTGAAGACACAGAAGA+AGG - Chr1:19696303-19696322 MsG0180001342.01.T01:intron 50.0%
GGAGTGTGGAAGTGAGTGTG+AGG - Chr1:19697112-19697131 MsG0180001342.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 19695858 19698371 19695858 ID=MsG0180001342.01;Name=MsG0180001342.01
Chr1 mRNA 19695858 19698371 19695858 ID=MsG0180001342.01.T01;Parent=MsG0180001342.01;Name=MsG0180001342.01.T01;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0.83|0.71|7|0|440
Chr1 exon 19698315 19698371 19698315 ID=MsG0180001342.01.T01:exon:26036;Parent=MsG0180001342.01.T01
Chr1 exon 19697719 19698196 19697719 ID=MsG0180001342.01.T01:exon:26035;Parent=MsG0180001342.01.T01
Chr1 exon 19697268 19697386 19697268 ID=MsG0180001342.01.T01:exon:26034;Parent=MsG0180001342.01.T01
Chr1 exon 19696920 19697193 19696920 ID=MsG0180001342.01.T01:exon:26033;Parent=MsG0180001342.01.T01
Chr1 exon 19696732 19696818 19696732 ID=MsG0180001342.01.T01:exon:26032;Parent=MsG0180001342.01.T01
Chr1 exon 19696306 19696364 19696306 ID=MsG0180001342.01.T01:exon:26031;Parent=MsG0180001342.01.T01
Chr1 exon 19695858 19696106 19695858 ID=MsG0180001342.01.T01:exon:26030;Parent=MsG0180001342.01.T01
Chr1 CDS 19698315 19698371 19698315 ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01
Chr1 CDS 19697719 19698196 19697719 ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01
Chr1 CDS 19697268 19697386 19697268 ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01
Chr1 CDS 19696920 19697193 19696920 ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01
Chr1 CDS 19696732 19696818 19696732 ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01
Chr1 CDS 19696306 19696364 19696306 ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01
Chr1 CDS 19695858 19696106 19695858 ID=MsG0180001342.01.T01:cds;Parent=MsG0180001342.01.T01
Gene Sequence

>MsG0180001342.01.T01

ATGTCATTTCAATATATTCCAGATTTTCATAGGATCATCTTGCAAGATAAGAAACTTAGGGTTCCAAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAGTTTCCTAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGTAATGGTGATATTTGGTTTCAAAAAAATTGGGAAAATTTTGCAAAGCCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAACTATTCCAATATCAAATCAGTTGATGAAGGTGCTGAAGACACAGAAGAAGGTAAAGAAAGAGATGAATCAAGTGATGATGAAGTCACAAAAGAAGCTCAAGAAAGTGATGAATCAAGTGATGAGGAAGCCATTGAAGAAGGTGAAGAAAGTGATGAAGAGAGTAATGAGAGTTCAGATGAGGTTGAAATACCAAAGCAAACTCAAAGGACCAGAAATGGCAAGAGAAAATTCTCAGGTAGTAACAAAGTGGCCATGGTAAAGAAGGCTAGAAAATGCCTAAGATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGTCACAATCTTACGCCAATGGCTATTTCTTTTGGATACCAAATGAGTTTTCAAGAGAACACTTGAAAGATTTTAATGGAACCACAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAAGTGAGTGTGAGGTATTATGATACCCAGAAAAAATATTGTATGGGTGGTGGATGGAAAATATTCAGGCAAAAATATAATTTGCAAGTTGATGATGTTTGTAAATTTGAGATGATTCAACGGAGACCAATTTCATTCAATGTTACTATTACTCGTGCCAAAAACGAACCAAAGCCAAAGAAATCACTAGGTTATAAAAAAGGGGTCTCTTGTGGTAAGAGTGTTGTAAAGAAGCAAGACATTGGAGGAACATCTAGGAGCCATCCAAAAGTAAAGGAAGGTCGTGATGTGAAGGAGCACAAGACATTCAAGGTTTTCGTGAAGAACAAAACCCCGTGTGTACCAAAGGAGTTTATGAATCATGAAAATATCTTGGAGTTGAAAATGGGGAGAAAATCATGGTTTGTAAAAGTCAAATATTATGAGAGTCTTTGTGGCTGTAAGTTCGGTAAAGGTTGGAGAAAATTCATGAAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCTTCAAGTTAATTGATGAAAGAAATTTTGTGTTTGATGTTTCAATTGTAGGAAAGAATCCATTAGCTGTGCTTCTTTAA

Protein sequence

>MsG0180001342.01.T01

MSFQYIPDFHRIILQDKKLRVPKKYVEKYWKGISNPIFLKFPNGVEQKIFWVESNGDIWFQKNWENFAKPFKYGYLLTFKFIGGSYFKVKIFGANTLEINYSNIKSVDEGAEDTEEGKERDESSDDEVTKEAQESDESSDEEAIEEGEESDEESNESSDEVEIPKQTQRTRNGKRKFSGSNKVAMVKKARKCLRSEAVNENPSFEVIMSQSYANGYFFWIPNEFSREHLKDFNGTTTIRVGNERSVEVSVRYYDTQKKYCMGGGWKIFRQKYNLQVDDVCKFEMIQRRPISFNVTITRAKNEPKPKKSLGYKKGVSCGKSVVKKQDIGGTSRSHPKVKEGRDVKEHKTFKVFVKNKTPCVPKEFMNHENILELKMGRKSWFVKVKYYESLCGCKFGKGWRKFMKECKVEIGDTCLFKLIDERNFVFDVSIVGKNPLAVLL*