AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012570.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012570.01.T01 MTR_3g025800 99.104 335 3 0 13 347 24 358 0.0 684
MsG0380012570.01.T01 MTR_1g097890 31.629 313 164 4 13 325 47 309 1.79e-43 152
MsG0380012570.01.T01 MTR_8g092080 31.715 309 161 5 18 326 53 311 2.34e-41 147
MsG0380012570.01.T01 MTR_8g098240 32.787 305 163 5 20 321 323 588 2.90e-41 152
MsG0380012570.01.T01 MTR_6g034515 33.559 295 151 8 31 317 81 338 1.18e-33 127
MsG0380012570.01.T01 MTR_1g095780 29.338 317 166 10 13 322 521 786 1.21e-33 132
MsG0380012570.01.T01 MTR_5g073040 29.321 324 190 6 11 327 33 324 2.52e-32 123
MsG0380012570.01.T01 MTR_2g436930 28.704 324 181 7 20 315 18 319 1.75e-29 115
MsG0380012570.01.T01 MTR_2g436930 29.082 196 124 6 117 310 17 199 3.08e-13 70.1
MsG0380012570.01.T01 MTR_8g066975 30.284 317 186 11 12 318 3 294 3.28e-29 114
MsG0380012570.01.T01 MTR_8g066975 27.854 219 120 6 11 216 102 295 2.12e-13 70.1
MsG0380012570.01.T01 MTR_8g066975 28.037 214 120 7 117 320 10 199 4.71e-11 63.2
MsG0380012570.01.T01 MTR_3g098460 28.205 312 182 8 17 321 205 481 4.09e-29 117
MsG0380012570.01.T01 MTR_3g098460 32.394 213 109 7 10 214 292 477 1.35e-21 95.9
MsG0380012570.01.T01 MTR_5g030530 29.193 322 183 12 12 318 3 294 8.51e-28 110
MsG0380012570.01.T01 MTR_5g030530 27.397 219 121 6 11 216 102 295 1.02e-11 65.1
MsG0380012570.01.T01 MTR_4g119770 28.221 326 180 10 20 314 17 319 8.70e-28 111
MsG0380012570.01.T01 MTR_4g119770 29.744 195 126 3 117 310 16 200 2.73e-14 73.2
MsG0380012570.01.T01 MTR_7g109135 27.044 318 191 9 20 326 25 312 3.32e-27 109
MsG0380012570.01.T01 MTR_7g109135 24.631 203 127 4 33 232 139 318 3.22e-12 67.0
MsG0380012570.01.T01 MTR_8g096050 27.331 311 190 7 15 321 225 503 4.86e-26 108
MsG0380012570.01.T01 MTR_7g064980 26.562 320 187 11 16 318 24 312 7.56e-25 103
MsG0380012570.01.T01 MTR_7g064980 23.529 204 136 2 12 215 129 312 9.56e-14 71.6
MsG0380012570.01.T01 MTR_7g064980 23.629 237 159 4 93 326 4 221 2.48e-12 67.4
MsG0380012570.01.T01 MTR_8g076760 26.712 292 186 7 31 314 28 299 1.85e-24 102
MsG0380012570.01.T01 MTR_8g076760 31.250 192 103 5 131 319 30 195 7.62e-15 74.7
MsG0380012570.01.T01 MTR_8g076760 25.123 203 144 4 20 222 116 310 2.40e-13 70.1
MsG0380012570.01.T01 MTR_8g027975 23.582 335 197 8 13 318 47 351 1.20e-23 100
MsG0380012570.01.T01 MTR_8g027975 25.561 223 143 4 107 327 43 244 3.63e-12 67.0
MsG0380012570.01.T01 MTR_8g027975 35.556 90 57 1 226 314 38 127 9.41e-11 62.8
MsG0380012570.01.T01 MTR_4g057850 26.974 304 190 7 10 308 15 291 1.09e-22 97.1
MsG0380012570.01.T01 MTR_7g109135 25.472 318 189 9 20 326 25 305 1.77e-22 96.3
MsG0380012570.01.T01 MTR_1g087840 27.000 300 172 10 33 318 35 301 1.93e-22 96.3
MsG0380012570.01.T01 MTR_7g084400 25.392 319 191 9 11 321 207 486 2.28e-22 98.2
MsG0380012570.01.T01 MTR_5g009500 24.316 329 204 7 11 318 32 336 5.57e-22 95.5
MsG0380012570.01.T01 MTR_5g009500 25.116 215 138 4 115 327 38 231 1.51e-11 65.1
MsG0380012570.01.T01 MTR_5g009500 39.773 88 52 1 228 314 27 114 8.28e-11 62.8
MsG0380012570.01.T01 MTR_4g114320 25.574 305 187 7 14 314 120 388 3.11e-21 94.0
MsG0380012570.01.T01 MTR_3g104600 25.879 313 203 7 15 317 33 326 3.21e-21 93.6
MsG0380012570.01.T01 MTR_3g107510 24.359 312 188 7 15 318 120 391 4.48e-21 93.6
MsG0380012570.01.T01 MTR_3g107510 28.194 227 123 7 98 322 109 297 3.69e-13 70.5
MsG0380012570.01.T01 MTR_3g107510 27.805 205 123 6 11 214 210 390 1.83e-12 68.2
MsG0380012570.01.T01 MTR_4g088545 24.104 307 208 5 14 315 9 295 8.93e-21 91.7
MsG0380012570.01.T01 MTR_4g088545 22.768 224 142 4 112 329 9 207 6.66e-12 65.9
MsG0380012570.01.T01 MTR_1g012030 25.000 316 181 8 14 317 136 407 1.52e-20 92.4
MsG0380012570.01.T01 MTR_1g012030 32.432 148 88 4 177 322 177 314 8.24e-13 69.3
MsG0380012570.01.T01 MTR_1g012030 26.829 205 125 6 11 214 227 407 9.35e-12 66.2
MsG0380012570.01.T01 MTR_4g119770 28.464 267 148 9 20 266 17 260 2.09e-20 89.7
MsG0380012570.01.T01 MTR_4g119770 29.744 195 126 3 117 310 16 200 1.84e-14 72.8
MsG0380012570.01.T01 MTR_6g091800 24.458 323 214 8 15 331 17 315 1.17e-19 88.6
MsG0380012570.01.T01 MTR_5g055410 25.490 306 183 9 33 325 37 310 1.17e-19 89.0
MsG0380012570.01.T01 MTR_5g055410 25.405 185 118 4 32 213 134 301 3.77e-11 63.9
MsG0380012570.01.T01 MTR_4g012850 29.393 313 187 9 15 323 14 296 1.35e-19 88.2
MsG0380012570.01.T01 MTR_7g109135 25.279 269 162 8 73 332 2 240 3.58e-18 83.2
MsG0380012570.01.T01 MTR_7g109135 24.631 203 127 4 33 232 61 240 1.39e-12 67.0
MsG0380012570.01.T01 MTR_6g015860 25.321 312 171 11 31 318 31 304 5.71e-18 84.0
MsG0380012570.01.T01 MTR_2g032610 27.407 270 166 6 4 265 16 263 6.64e-18 83.6
MsG0380012570.01.T01 MTR_6g091800 22.781 338 225 7 15 331 17 339 1.03e-17 83.2
MsG0380012570.01.T01 MTR_7g015870 26.250 320 174 12 3 298 11 292 2.04e-17 82.0
MsG0380012570.01.T01 MTR_2g436930 35.849 159 90 2 169 315 71 229 3.42e-17 80.1
MsG0380012570.01.T01 MTR_6g091800 26.087 253 163 6 15 265 17 247 1.35e-16 79.3
MsG0380012570.01.T01 MTR_6g091800 27.950 161 92 4 179 326 62 211 3.53e-12 66.2
MsG0380012570.01.T01 MTR_6g091800 26.087 253 163 6 15 265 17 247 1.76e-16 78.6
MsG0380012570.01.T01 MTR_6g091800 27.950 161 92 4 179 326 62 211 4.88e-12 65.9
MsG0380012570.01.T01 MTR_7g015870 26.712 292 152 12 31 298 35 288 1.79e-16 79.7
MsG0380012570.01.T01 MTR_6g091800 23.920 301 195 6 15 294 17 304 2.45e-16 79.0
MsG0380012570.01.T01 MTR_4g088545 24.806 258 169 6 14 266 9 246 5.81e-16 77.4
MsG0380012570.01.T01 MTR_4g088545 22.768 224 142 4 112 329 9 207 6.55e-12 65.5
MsG0380012570.01.T01 MTR_7g068340 22.222 288 184 6 33 317 103 353 1.08e-15 77.8
MsG0380012570.01.T01 MTR_4g018750 24.675 308 191 9 17 314 15 291 1.30e-15 76.6
MsG0380012570.01.T01 MTR_4g005330 25.078 319 199 9 8 314 57 347 1.48e-15 77.4
MsG0380012570.01.T01 MTR_1g088995 24.444 315 191 10 13 318 29 305 1.65e-15 76.6
MsG0380012570.01.T01 MTR_3g462140 22.713 317 211 7 11 320 9 298 3.44e-15 75.5
MsG0380012570.01.T01 MTR_5g081150 24.611 321 198 8 16 322 33 323 3.45e-15 75.9
MsG0380012570.01.T01 MTR_4g088545 24.779 226 148 5 14 237 9 214 4.39e-15 74.3
MsG0380012570.01.T01 MTR_4g088545 22.768 224 142 4 112 329 9 207 2.68e-12 66.2
MsG0380012570.01.T01 MTR_2g102010 27.972 286 174 8 12 294 12 268 6.14e-15 74.7
MsG0380012570.01.T01 MTR_7g066690 22.830 311 207 8 10 314 10 293 8.45e-15 74.3
MsG0380012570.01.T01 MTR_6g091800 23.881 268 174 5 15 265 17 271 1.21e-14 73.9
MsG0380012570.01.T01 MTR_6g091800 23.881 268 174 5 15 265 17 271 1.43e-14 73.6
MsG0380012570.01.T01 MTR_3g104500 27.638 199 123 4 17 214 141 319 1.73e-14 73.9
MsG0380012570.01.T01 MTR_6g034145 23.741 278 185 6 60 331 5 261 3.47e-14 72.0
MsG0380012570.01.T01 MTR_6g034145 25.229 218 128 6 13 215 53 250 3.25e-11 63.5
MsG0380012570.01.T01 MTR_7g109135 24.638 207 124 6 131 332 40 219 9.76e-14 70.1
MsG0380012570.01.T01 MTR_7g109135 24.631 203 127 4 33 232 40 219 1.36e-12 66.6
MsG0380012570.01.T01 MTR_3g100570 23.373 338 200 10 15 322 4 312 9.82e-14 71.2
MsG0380012570.01.T01 MTR_3g100570 24.757 206 137 4 11 214 118 307 9.74e-11 62.4
MsG0380012570.01.T01 MTR_4g018750 25.735 272 161 9 17 278 15 255 1.66e-13 70.5
MsG0380012570.01.T01 MTR_4g005330 24.756 307 191 9 20 314 3 281 3.10e-13 69.7
MsG0380012570.01.T01 MTR_8g019480 25.641 273 160 6 17 265 33 286 3.81e-12 67.0
MsG0380012570.01.T01 MTR_4g016730 22.742 299 168 9 33 318 105 353 5.26e-12 66.6
MsG0380012570.01.T01 MTR_3g074490 21.474 312 201 10 20 317 119 400 5.87e-12 66.6
MsG0380012570.01.T01 MTR_8g090210 22.508 311 199 9 20 317 113 394 6.64e-12 66.6
MsG0380012570.01.T01 MTR_7g117030 21.512 344 214 10 16 323 15 338 1.18e-11 65.5
MsG0380012570.01.T01 MTR_6g091910 25.238 210 128 5 15 215 17 206 1.74e-11 63.5
MsG0380012570.01.T01 MTR_3g090820 24.653 288 176 10 54 323 126 390 2.21e-11 65.1
MsG0380012570.01.T01 MTR_1g090330 30.682 176 87 7 131 299 30 177 2.55e-11 64.3
MsG0380012570.01.T01 MTR_7g083790 25.902 305 164 15 11 297 70 330 2.91e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012570.01.T01 AT1G74240 72.121 330 88 2 13 342 32 357 8.86e-163 459
MsG0380012570.01.T01 AT1G74240 71.565 313 85 2 30 342 1 309 1.40e-150 426
MsG0380012570.01.T01 AT4G39460 33.121 314 160 5 13 326 54 317 1.07e-46 161
MsG0380012570.01.T01 AT4G39460 33.121 314 160 5 13 326 54 317 1.07e-46 161
MsG0380012570.01.T01 AT4G39460 33.121 314 160 5 13 326 54 317 1.07e-46 161
MsG0380012570.01.T01 AT1G34065 32.154 311 161 5 13 323 71 331 2.20e-43 153
MsG0380012570.01.T01 AT1G34065 32.154 311 161 5 13 323 78 338 2.61e-43 153
MsG0380012570.01.T01 AT2G26360 29.773 309 171 6 12 318 110 374 3.26e-37 138
MsG0380012570.01.T01 AT4G11440 29.712 313 182 5 9 317 322 600 1.56e-35 137
MsG0380012570.01.T01 AT4G11440 29.712 313 182 5 9 317 322 600 1.56e-35 137
MsG0380012570.01.T01 AT2G30160 30.312 320 183 8 11 322 36 323 7.58e-32 122
MsG0380012570.01.T01 AT5G46800 30.503 318 191 9 12 320 3 299 1.06e-30 118
MsG0380012570.01.T01 AT5G46800 26.728 217 118 6 11 211 102 293 8.56e-12 65.5
MsG0380012570.01.T01 AT5G46800 30.503 318 191 9 12 320 3 299 1.06e-30 118
MsG0380012570.01.T01 AT5G46800 26.728 217 118 6 11 211 102 293 8.56e-12 65.5
MsG0380012570.01.T01 AT5G46800 30.503 318 191 9 12 320 3 299 1.06e-30 118
MsG0380012570.01.T01 AT5G46800 26.728 217 118 6 11 211 102 293 8.56e-12 65.5
MsG0380012570.01.T01 AT2G35800 27.010 311 176 7 12 318 540 803 1.80e-30 122
MsG0380012570.01.T01 AT1G07030 29.503 322 181 9 11 321 34 320 1.98e-29 115
MsG0380012570.01.T01 AT1G25380 28.086 324 189 10 33 343 37 329 4.42e-27 110
MsG0380012570.01.T01 AT1G25380 25.789 190 110 5 32 213 136 302 8.66e-13 68.9
MsG0380012570.01.T01 AT1G25380 28.086 324 189 10 33 343 37 329 4.42e-27 110
MsG0380012570.01.T01 AT1G25380 25.789 190 110 5 32 213 136 302 8.66e-13 68.9
MsG0380012570.01.T01 AT5G48970 27.879 330 185 8 20 318 25 332 8.90e-27 108
MsG0380012570.01.T01 AT5G48970 24.779 226 149 5 117 333 24 237 1.86e-11 65.1
MsG0380012570.01.T01 AT5G42130 30.272 294 159 7 33 317 134 390 6.10e-26 107
MsG0380012570.01.T01 AT3G21390 27.761 335 190 9 20 324 22 334 1.75e-25 105
MsG0380012570.01.T01 AT3G21390 28.788 198 120 6 117 310 21 201 4.14e-12 67.0
MsG0380012570.01.T01 AT3G21390 28.012 332 187 9 20 321 44 353 1.86e-25 105
MsG0380012570.01.T01 AT3G21390 29.648 199 117 7 117 310 43 223 4.02e-12 67.0
MsG0380012570.01.T01 AT2G47490 28.947 304 182 9 33 329 33 309 1.91e-25 104
MsG0380012570.01.T01 AT3G53940 28.135 327 186 12 16 326 72 365 6.71e-25 103
MsG0380012570.01.T01 AT3G53940 26.016 246 141 6 96 326 48 267 3.48e-13 70.1
MsG0380012570.01.T01 AT3G53940 23.415 205 137 3 11 215 174 358 6.28e-13 69.3
MsG0380012570.01.T01 AT4G32400 26.774 310 185 6 14 318 111 383 9.94e-23 98.2
MsG0380012570.01.T01 AT4G32400 25.676 222 125 6 101 320 104 287 7.70e-11 63.2
MsG0380012570.01.T01 AT5G01340 26.645 304 192 7 10 308 10 287 1.22e-22 97.1
MsG0380012570.01.T01 AT4G01100 22.941 340 193 9 13 318 38 342 2.35e-22 96.7
MsG0380012570.01.T01 AT4G01100 25.714 245 159 4 85 327 12 235 1.40e-13 71.2
MsG0380012570.01.T01 AT2G37890 25.938 320 191 10 14 318 42 330 2.56e-22 96.3
MsG0380012570.01.T01 AT5G66380 26.923 312 193 8 14 314 7 294 5.47e-22 95.1
MsG0380012570.01.T01 AT4G01100 23.276 348 196 9 13 318 38 356 1.05e-21 95.1
MsG0380012570.01.T01 AT4G01100 31.683 101 68 1 222 321 25 125 9.25e-11 62.8
MsG0380012570.01.T01 AT5G48970 27.857 280 160 7 56 315 1 258 2.10e-21 92.8
MsG0380012570.01.T01 AT4G26180 25.526 333 219 10 15 341 19 328 4.16e-21 92.8
MsG0380012570.01.T01 AT3G55640 24.471 331 206 8 10 326 31 331 4.88e-21 92.8
MsG0380012570.01.T01 AT3G55640 26.033 242 161 4 92 333 16 239 3.87e-15 75.9
MsG0380012570.01.T01 AT3G55640 24.471 331 206 8 10 326 31 331 4.88e-21 92.8
MsG0380012570.01.T01 AT3G55640 26.033 242 161 4 92 333 16 239 3.87e-15 75.9
MsG0380012570.01.T01 AT2G33820 23.585 318 196 7 14 315 15 301 7.57e-21 92.0
MsG0380012570.01.T01 AT4G01100 23.125 320 177 9 33 318 8 292 2.05e-20 90.5
MsG0380012570.01.T01 AT4G01100 29.814 161 110 2 169 327 26 185 3.52e-13 69.7
MsG0380012570.01.T01 AT5G51050 25.796 314 184 11 17 321 223 496 2.16e-19 89.4
MsG0380012570.01.T01 AT4G26180 26.923 286 182 9 15 294 19 283 2.16e-19 87.4
MsG0380012570.01.T01 AT4G26180 31.765 170 88 7 171 325 56 212 5.15e-13 68.9
MsG0380012570.01.T01 AT1G14560 26.531 294 188 6 33 317 43 317 3.94e-19 87.4
MsG0380012570.01.T01 AT1G14560 25.943 212 130 4 16 215 122 318 2.15e-13 70.5
MsG0380012570.01.T01 AT5G07320 25.939 293 171 9 33 320 225 476 5.45e-19 88.2
MsG0380012570.01.T01 AT5G07320 27.143 210 119 7 10 214 293 473 2.49e-15 77.4
MsG0380012570.01.T01 AT3G54110 23.529 323 206 8 10 322 8 299 6.86e-19 86.3
MsG0380012570.01.T01 AT5G15640 26.207 290 158 9 31 298 42 297 1.30e-18 85.9
MsG0380012570.01.T01 AT5G61810 23.052 308 193 6 17 320 65 332 1.40e-18 85.9
MsG0380012570.01.T01 AT5G15640 26.207 290 158 9 31 298 35 290 2.14e-18 85.1
MsG0380012570.01.T01 AT2G33820 23.006 326 196 8 14 315 15 309 4.36e-18 84.3
MsG0380012570.01.T01 AT5G61810 23.052 308 193 6 17 320 208 475 5.13e-18 85.5
MsG0380012570.01.T01 AT1G14560 27.306 271 169 6 33 294 43 294 6.85e-18 83.6
MsG0380012570.01.T01 AT1G14560 26.596 188 111 4 16 191 122 294 1.91e-11 64.7
MsG0380012570.01.T01 AT2G39970 25.649 308 197 9 30 316 21 317 1.92e-16 79.7
MsG0380012570.01.T01 AT1G72820 27.217 327 192 10 17 318 31 336 2.30e-16 79.7
MsG0380012570.01.T01 AT1G72820 27.217 327 192 10 17 318 31 336 2.30e-16 79.7
MsG0380012570.01.T01 AT1G79900 28.571 294 169 8 32 322 31 286 5.60e-16 77.8
MsG0380012570.01.T01 AT3G20240 27.329 322 174 9 15 314 50 333 9.90e-16 77.8
MsG0380012570.01.T01 AT4G03115 24.768 323 191 10 5 317 26 306 1.14e-15 77.0
MsG0380012570.01.T01 AT4G03115 24.768 323 191 10 5 317 58 338 1.41e-15 77.4
MsG0380012570.01.T01 AT3G55640 26.033 242 161 4 92 333 16 239 1.85e-15 75.5
MsG0380012570.01.T01 AT3G55640 26.033 242 161 4 92 333 16 239 1.85e-15 75.5
MsG0380012570.01.T01 AT5G01500 21.993 291 183 7 33 318 135 386 8.35e-15 75.5
MsG0380012570.01.T01 AT5G58970 21.231 325 215 6 10 324 9 302 8.94e-15 74.3
MsG0380012570.01.T01 AT3G51870 22.259 301 190 7 23 318 97 358 2.10e-14 73.9
MsG0380012570.01.T01 AT1G14560 25.943 212 130 4 16 215 24 220 6.53e-14 70.9
MsG0380012570.01.T01 AT1G14560 26.293 232 146 4 95 317 4 219 3.17e-13 68.9
MsG0380012570.01.T01 AT3G53940 26.829 246 139 7 96 326 48 267 1.67e-13 70.5
MsG0380012570.01.T01 AT1G14140 23.693 287 190 7 16 297 15 277 2.02e-13 70.5
MsG0380012570.01.T01 AT2G33820 24.138 203 136 5 14 214 15 201 5.17e-13 68.9
MsG0380012570.01.T01 AT5G26200 25.231 325 206 11 15 323 37 340 1.93e-12 67.8
MsG0380012570.01.T01 AT5G56450 26.087 207 127 7 17 220 145 328 2.24e-12 67.8
MsG0380012570.01.T01 AT5G64970 22.476 307 200 8 24 317 14 295 3.54e-12 66.6
MsG0380012570.01.T01 AT5G64970 22.727 308 200 8 23 317 137 419 3.93e-12 67.4
MsG0380012570.01.T01 AT5G09470 26.255 259 159 7 63 317 99 329 7.70e-12 65.9
MsG0380012570.01.T01 AT4G03115 23.469 196 125 3 20 215 66 236 1.00e-11 64.7
MsG0380012570.01.T01 AT4G03115 23.469 196 125 3 20 215 74 244 1.96e-11 63.9
MsG0380012570.01.T01 AT5G58970 25.000 220 130 6 115 319 16 215 5.71e-11 62.8

Find 99 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGCTGTTGCGGGTGCTTT+TGG 0.179774 3:+19970785 MsG0380012570.01.T01:CDS
CCATCTGCAATATGCCTTTC+TGG 0.185244 3:-19971029 None:intergenic
TTCCTTTGAGGGCCTGGTTT+TGG 0.189025 3:+19972872 MsG0380012570.01.T01:CDS
GAATTATTAACGTGCCAATT+TGG 0.247306 3:-19972852 None:intergenic
GGCTTCAGCGCTTACCTTCA+TGG 0.250292 3:+19973477 MsG0380012570.01.T01:CDS
CAAAACTAGGCTGCAAGTTC+AGG 0.252977 3:+19973030 MsG0380012570.01.T01:CDS
GAAATATATGATTATTATAA+AGG 0.257154 3:+19972101 MsG0380012570.01.T01:CDS
ATGCAGAACACAGGGTTTAA+AGG 0.259624 3:+19972148 MsG0380012570.01.T01:CDS
GCGACTGGTGCAACATATTT+TGG 0.263682 3:+19971433 MsG0380012570.01.T01:CDS
GGTGTAGTACCTGGTGTTAC+TGG 0.266882 3:+19971403 MsG0380012570.01.T01:CDS
AGGAGTTAAGGGGATGTTTA+GGG 0.293636 3:+19973423 MsG0380012570.01.T01:CDS
TGGATGCAATTTACAACATA+TGG 0.297888 3:+19973392 MsG0380012570.01.T01:CDS
CAAAGTCAAGCTATTCTAAA+TGG 0.302898 3:+19970851 MsG0380012570.01.T01:CDS
ATCCTAGCCTTGGTGGCCAC+TGG 0.304355 3:+19971494 MsG0380012570.01.T01:CDS
AAGGAGTTAAGGGGATGTTT+AGG 0.304885 3:+19973422 MsG0380012570.01.T01:CDS
GATGGATATCTAATCCAAAT+TGG 0.340977 3:+19972838 MsG0380012570.01.T01:CDS
CACTGGGCACATTTCATTGC+TGG 0.343281 3:+19971511 MsG0380012570.01.T01:CDS
TTTGTATGGGGAGCTGTTGC+GGG 0.362454 3:+19970776 MsG0380012570.01.T01:CDS
AAGTATGGAGGGAGTTTGTA+TGG 0.370405 3:+19970762 MsG0380012570.01.T01:CDS
AGTAGAAAAGAAGAAATCTT+TGG 0.370427 3:+19973573 MsG0380012570.01.T01:CDS
TGCAGAACACAGGGTTTAAA+GGG 0.376283 3:+19972149 MsG0380012570.01.T01:CDS
TGTATTATGATATTGAAGTA+TGG 0.376307 3:+19970747 MsG0380012570.01.T01:CDS
ATGGGCTAAGGAAGGAGTTA+AGG 0.377069 3:+19973411 MsG0380012570.01.T01:CDS
CACGTTAATAATTCCTTTGA+GGG 0.388766 3:+19972861 MsG0380012570.01.T01:CDS
GCAAGGGATGTACCATTTGC+TGG 0.397105 3:+19972651 MsG0380012570.01.T01:CDS
CGGTCTGTCTGGAAGGTTGA+TGG 0.398866 3:+19971054 MsG0380012570.01.T01:CDS
TCTATTGTGTTTAGGTATAA+CGG 0.412192 3:+19973364 MsG0380012570.01.T01:intron
TGCATATCTCACCACTCCTT+TGG 0.414329 3:+19973000 MsG0380012570.01.T01:CDS
TGCAGATGGTGCGGTCTGTC+TGG 0.418211 3:+19971043 MsG0380012570.01.T01:CDS
TCCTAGCCTTGGTGGCCACT+GGG 0.420808 3:+19971495 MsG0380012570.01.T01:CDS
GGTTTAAAGGGTTTATATGC+AGG 0.422881 3:+19972161 MsG0380012570.01.T01:CDS
TTGAAAGATGCTACAGAGTA+CGG 0.432563 3:+19972807 MsG0380012570.01.T01:CDS
AAGTTCAGGGTTCAACTTTG+AGG 0.434100 3:+19973044 MsG0380012570.01.T01:CDS
AGCTATTCTAAATGGTGTTA+AGG 0.436394 3:+19970859 MsG0380012570.01.T01:CDS
TAATAATTCCTTTGAGGGCC+TGG 0.437731 3:+19972866 MsG0380012570.01.T01:CDS
GAGAATTGCGTGGTACATTC+CGG 0.443486 3:+19973456 MsG0380012570.01.T01:CDS
AAATATATGATTATTATAAA+GGG 0.444285 3:+19972102 MsG0380012570.01.T01:CDS
GTTTGTATGGGGAGCTGTTG+CGG 0.447613 3:+19970775 MsG0380012570.01.T01:CDS
CAGAGTACGGGAAGCGAAGA+TGG 0.449993 3:+19972820 MsG0380012570.01.T01:CDS
CATTTCATTGCTGGAGCTGT+TGG 0.450661 3:+19971520 MsG0380012570.01.T01:CDS
CGCTGCTTTATCACTTCGCA+TGG 0.451002 3:-19972002 None:intergenic
GCACGTTAATAATTCCTTTG+AGG 0.456007 3:+19972860 MsG0380012570.01.T01:CDS
AGCGCTTACCTTCATGGCTG+TGG 0.458535 3:+19973483 MsG0380012570.01.T01:CDS
AAGCAGCGCATGCAAGTTCA+AGG 0.461159 3:+19972017 MsG0380012570.01.T01:CDS
GGAATGTACCACGCAATTCT+CGG 0.466750 3:-19973454 None:intergenic
TGGGCTAAGGAAGGAGTTAA+GGG 0.467533 3:+19973412 MsG0380012570.01.T01:CDS
AACATTGATCGAACCACCAT+TGG 0.469379 3:-19973539 None:intergenic
CTTTGGACGTCGTCAAAACT+AGG 0.479684 3:+19973017 MsG0380012570.01.T01:CDS
TGGAAGGTTGATGGATTAAG+AGG 0.483974 3:+19971063 MsG0380012570.01.T01:CDS
GAATGTACCACGCAATTCTC+GGG 0.494354 3:-19973453 None:intergenic
GGATGCAATTTACAACATAT+GGG 0.498562 3:+19973393 MsG0380012570.01.T01:CDS
TGCATATTGAGCTGCCTGCA+TGG 0.498693 3:-19972130 None:intergenic
CTTCATTGCAGTAGAACTCC+AGG 0.501088 3:-19972051 None:intergenic
GAGAAATTCCACAGCCATGA+AGG 0.502862 3:-19973491 None:intergenic
AAAACTAGGCTGCAAGTTCA+GGG 0.510587 3:+19973031 MsG0380012570.01.T01:CDS
TAATCATATATTTCTGCACC+AGG 0.515860 3:-19972092 None:intergenic
AGTATGGAGGGAGTTTGTAT+GGG 0.522756 3:+19970763 MsG0380012570.01.T01:CDS
GAGGATTCACATCCTAGCCT+TGG 0.526709 3:+19971484 MsG0380012570.01.T01:CDS
TGGGGAAGGAATGATGCATC+CGG 0.530320 3:+19970805 MsG0380012570.01.T01:CDS
AATACCATCAGGCCAGCAAA+TGG 0.532808 3:-19972663 None:intergenic
AGAAAAGAAGAAATCTTTGG+AGG 0.540442 3:+19973576 MsG0380012570.01.T01:CDS
TGTACCATTTGCTGGCCTGA+TGG 0.545241 3:+19972659 MsG0380012570.01.T01:CDS
ATTATGATATTGAAGTATGG+AGG 0.546460 3:+19970750 MsG0380012570.01.T01:CDS
GTTTAAAGGGTTTATATGCA+GGG 0.548432 3:+19972162 MsG0380012570.01.T01:CDS
GTTTAGGTATAACGGTTGGT+TGG 0.552562 3:+19973372 MsG0380012570.01.T01:intron
AGTTCTACTGCAATGAAGAA+TGG 0.554759 3:+19972056 MsG0380012570.01.T01:CDS
GTTACTGGCTCTCTTGCGAC+TGG 0.554875 3:+19971418 MsG0380012570.01.T01:CDS
TCCCAAAACCAGGCCCTCAA+AGG 0.560158 3:-19972874 None:intergenic
ACATTGATCGAACCACCATT+GGG 0.560504 3:-19973538 None:intergenic
CAGCTAATCCTCCCAAAACC+AGG 0.561108 3:-19972884 None:intergenic
CTACAGATATTTGTCTACAC+TGG 0.566858 3:+19972629 MsG0380012570.01.T01:intron
ATGAAGGTAAGCGCTGAAGC+CGG 0.569322 3:-19973475 None:intergenic
AAAGAAGAAATCTTTGGAGG+AGG 0.570380 3:+19973579 MsG0380012570.01.T01:CDS
GATTCACATCCTAGCCTTGG+TGG 0.573120 3:+19971487 MsG0380012570.01.T01:CDS
TTCAAGGCACAATTACATCC+TGG 0.574829 3:+19972033 MsG0380012570.01.T01:CDS
TGAAAGATGCTACAGAGTAC+GGG 0.575711 3:+19972808 MsG0380012570.01.T01:CDS
CAGCTCAATATGCAGAACAC+AGG 0.577068 3:+19972139 MsG0380012570.01.T01:CDS
TATAAAGGGATGTTCCATGC+AGG 0.579831 3:+19972116 MsG0380012570.01.T01:CDS
GCCCAGTGGCCACCAAGGCT+AGG 0.587248 3:-19971496 None:intergenic
ATTTGTCTGTAGAACCAGAA+AGG 0.587505 3:+19971015 MsG0380012570.01.T01:intron
TTGTGTTTAGGTATAACGGT+TGG 0.591535 3:+19973368 MsG0380012570.01.T01:intron
CCAGAAAGGCATATTGCAGA+TGG 0.592867 3:+19971029 MsG0380012570.01.T01:CDS
GATGGTGCGGTCTGTCTGGA+AGG 0.593657 3:+19971047 MsG0380012570.01.T01:CDS
GATATTTGTCTACACTGGCA+AGG 0.597256 3:+19972634 MsG0380012570.01.T01:intron
GCAAGAGAGCCAGTAACACC+AGG 0.599638 3:-19971412 None:intergenic
AATTTACAACATATGGGCTA+AGG 0.602788 3:+19973399 MsG0380012570.01.T01:CDS
TTATGATATTGAAGTATGGA+GGG 0.606052 3:+19970751 MsG0380012570.01.T01:CDS
TACAACATATGGGCTAAGGA+AGG 0.606603 3:+19973403 MsG0380012570.01.T01:CDS
ATATTTGTCTACACTGGCAA+GGG 0.612528 3:+19972635 MsG0380012570.01.T01:CDS
AATGGCATTGCAATAAAACC+TGG 0.616472 3:+19972074 MsG0380012570.01.T01:CDS
TTTGACGACGTCCAAAGGAG+TGG 0.622510 3:-19973011 None:intergenic
AGCTCAATATGCAGAACACA+GGG 0.628284 3:+19972140 MsG0380012570.01.T01:CDS
GTATGGAGGGAGTTTGTATG+GGG 0.630655 3:+19970764 MsG0380012570.01.T01:CDS
GGAGTTAAGGGGATGTTTAG+GGG 0.637208 3:+19973424 MsG0380012570.01.T01:CDS
AATGTGCCCAGTGGCCACCA+AGG 0.650741 3:-19971501 None:intergenic
GGGCTAAGGAAGGAGTTAAG+GGG 0.653081 3:+19973413 MsG0380012570.01.T01:CDS
AAGGCATATTGCAGATGGTG+CGG 0.663444 3:+19971034 MsG0380012570.01.T01:CDS
GTAGCGTCCCGAGAATTGCG+TGG 0.697563 3:+19973446 MsG0380012570.01.T01:CDS
CAGCAATGAAATGTGCCCAG+TGG 0.728322 3:-19971510 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAAGCAAAAAAATA+AGG - Chr3:19971950-19971969 None:intergenic 10.0%
!! GAAATATATGATTATTATAA+AGG + Chr3:19972101-19972120 MsG0380012570.01.T01:CDS 10.0%
!! AACTTATTTGCAAAAATAAA+TGG - Chr3:19971729-19971748 None:intergenic 15.0%
!! ACAATATATAATTAATCACA+AGG - Chr3:19971368-19971387 None:intergenic 15.0%
!! ACTTATTTGCAAAAATAAAT+GGG - Chr3:19971728-19971747 None:intergenic 15.0%
!! TGATTAATTATATATTGTTC+AGG + Chr3:19971370-19971389 MsG0380012570.01.T01:intron 15.0%
!!! ATTTTTTTGCTTATATTTTC+AGG + Chr3:19971951-19971970 MsG0380012570.01.T01:intron 15.0%
!!! TAAATTGATAATGACAAAAA+AGG + Chr3:19973276-19973295 MsG0380012570.01.T01:intron 15.0%
!! AAAATCAAAATACCCATATT+TGG - Chr3:19971118-19971137 None:intergenic 20.0%
!! AAATCAAAATACCCATATTT+GGG - Chr3:19971117-19971136 None:intergenic 20.0%
!! AACTAGTTATATAAGTCAAA+TGG - Chr3:19972472-19972491 None:intergenic 20.0%
!! ACTATTCTAACATGTTATTA+TGG + Chr3:19973085-19973104 MsG0380012570.01.T01:intron 20.0%
!! ATAACATGTTAGAATAGTTA+TGG - Chr3:19973083-19973102 None:intergenic 20.0%
!! TGTATTATGATATTGAAGTA+TGG + Chr3:19970747-19970766 MsG0380012570.01.T01:CDS 20.0%
!! TTAATATTTGTCCCAAATAT+GGG + Chr3:19971103-19971122 MsG0380012570.01.T01:intron 20.0%
!! TTTAATATTTGTCCCAAATA+TGG + Chr3:19971102-19971121 MsG0380012570.01.T01:intron 20.0%
!!! ATCTTCGTAAAATCATTTTA+TGG - Chr3:19972377-19972396 None:intergenic 20.0%
!!! GTCATTATCAATTTAAGATA+AGG - Chr3:19973271-19973290 None:intergenic 20.0%
!!! TAAACATTTTCTTCTTTCTT+TGG + Chr3:19972561-19972580 MsG0380012570.01.T01:intron 20.0%
!!! TAATTGAAGTATTCCATTTA+TGG + Chr3:19971768-19971787 MsG0380012570.01.T01:intron 20.0%
!!! TTGTTTAAGAAAAGAGTTTT+TGG + Chr3:19971203-19971222 MsG0380012570.01.T01:intron 20.0%
!!! TTTATGCAAAATTGATTTTC+TGG + Chr3:19973191-19973210 MsG0380012570.01.T01:intron 20.0%
!!! TTTTGCTCAAATAATTAAAC+AGG + Chr3:19972971-19972990 MsG0380012570.01.T01:intron 20.0%
! AATAAACCTTCAAATTTGCA+CGG - Chr3:19971871-19971890 None:intergenic 25.0%
! AATACTTCAATTACTTACTG+AGG - Chr3:19971761-19971780 None:intergenic 25.0%
! ACTTAAGTACATATGTTCAA+AGG - Chr3:19972930-19972949 None:intergenic 25.0%
! AGTAGAAAAGAAGAAATCTT+TGG + Chr3:19973573-19973592 MsG0380012570.01.T01:CDS 25.0%
! AGTTGAATTATGTGATACTA+TGG + Chr3:19972488-19972507 MsG0380012570.01.T01:intron 25.0%
! ATCAAATTAAACGAGAAAGA+GGG - Chr3:19972257-19972276 None:intergenic 25.0%
! ATTATGATATTGAAGTATGG+AGG + Chr3:19970750-19970769 MsG0380012570.01.T01:CDS 25.0%
! ATTTGTAGACAAATATCATC+AGG - Chr3:19972718-19972737 None:intergenic 25.0%
! GTTCATTGAAGAAAATTAAG+TGG - Chr3:19973138-19973157 None:intergenic 25.0%
! TATCAAATTAAACGAGAAAG+AGG - Chr3:19972258-19972277 None:intergenic 25.0%
! TCACAGTCTAATTTATCTAT+AGG - Chr3:19970896-19970915 None:intergenic 25.0%
! TCATGATAATCAATCATTGT+TGG - Chr3:19971795-19971814 None:intergenic 25.0%
! TCTATTGTGTTTAGGTATAA+CGG + Chr3:19973364-19973383 MsG0380012570.01.T01:intron 25.0%
! TTATGATATTGAAGTATGGA+GGG + Chr3:19970751-19970770 MsG0380012570.01.T01:CDS 25.0%
! TTGCTTTATCTATTGTGTTT+AGG + Chr3:19973356-19973375 MsG0380012570.01.T01:intron 25.0%
!! AAGCTCTAACTTATCTAAAT+TGG - Chr3:19972517-19972536 None:intergenic 25.0%
!! ATTTGGATTGTCATGTTTTA+TGG + Chr3:19973310-19973329 MsG0380012570.01.T01:intron 25.0%
!! GCTTTTTATTCACAATCAAA+CGG - Chr3:19971918-19971937 None:intergenic 25.0%
!!! AAAAGGCTATTTTTTGCATT+TGG + Chr3:19973293-19973312 MsG0380012570.01.T01:intron 25.0%
!!! ATTGATTTTCTGGTGTATTA+TGG + Chr3:19973201-19973220 MsG0380012570.01.T01:intron 25.0%
AAAATTAAGTGGTATCCTGA+TGG - Chr3:19973127-19973146 None:intergenic 30.0%
AATCATTGTTGGTCCATAAA+TGG - Chr3:19971784-19971803 None:intergenic 30.0%
AGAAAAGAAGAAATCTTTGG+AGG + Chr3:19973576-19973595 MsG0380012570.01.T01:CDS 30.0%
ATGTACCATGCAATTGTTAT+AGG + Chr3:19972767-19972786 MsG0380012570.01.T01:intron 30.0%
CAAAGTCAAGCTATTCTAAA+TGG + Chr3:19970851-19970870 MsG0380012570.01.T01:CDS 30.0%
CACGTTAATAATTCCTTTGA+GGG + Chr3:19972861-19972880 MsG0380012570.01.T01:CDS 30.0%
CCTCATGTTAAAATCACATT+TGG + Chr3:19971149-19971168 MsG0380012570.01.T01:intron 30.0%
GAATTATTAACGTGCCAATT+TGG - Chr3:19972855-19972874 None:intergenic 30.0%
GATGGATATCTAATCCAAAT+TGG + Chr3:19972838-19972857 MsG0380012570.01.T01:CDS 30.0%
GGATGCAATTTACAACATAT+GGG + Chr3:19973393-19973412 MsG0380012570.01.T01:CDS 30.0%
GTTTAAAGGGTTTATATGCA+GGG + Chr3:19972162-19972181 MsG0380012570.01.T01:CDS 30.0%
TAGACAATAAATAGTACCCT+AGG + Chr3:19972298-19972317 MsG0380012570.01.T01:intron 30.0%
TCAAATTAAACGAGAAAGAG+GGG - Chr3:19972256-19972275 None:intergenic 30.0%
TCATAGAGTCAACTAAAAAG+TGG + Chr3:19971458-19971477 MsG0380012570.01.T01:CDS 30.0%
TGGATGCAATTTACAACATA+TGG + Chr3:19973392-19973411 MsG0380012570.01.T01:CDS 30.0%
TTATGACAACGACAACTTAT+TGG - Chr3:19972326-19972345 None:intergenic 30.0%
! AATTTACAACATATGGGCTA+AGG + Chr3:19973399-19973418 MsG0380012570.01.T01:CDS 30.0%
! AGCTATTCTAAATGGTGTTA+AGG + Chr3:19970859-19970878 MsG0380012570.01.T01:CDS 30.0%
! ATATTGTTCAGGCTTTTACA+GGG + Chr3:19971381-19971400 MsG0380012570.01.T01:intron 30.0%
! ATGGACTAAAGCTAAATTGA+TGG + Chr3:19973329-19973348 MsG0380012570.01.T01:intron 30.0%
! CATCATTTTACCCTCAAAAT+AGG - Chr3:19971236-19971255 None:intergenic 30.0%
! CATGTATATAAAAGCATGCT+TGG - Chr3:19971263-19971282 None:intergenic 30.0%
! TAAAGCTTCTCTCTTTTGTT+GGG + Chr3:19970986-19971005 MsG0380012570.01.T01:intron 30.0%
! TAATCATATATTTCTGCACC+AGG - Chr3:19972095-19972114 None:intergenic 30.0%
! TATATTGTTCAGGCTTTTAC+AGG + Chr3:19971380-19971399 MsG0380012570.01.T01:intron 30.0%
! TGATCTTGTTATGTAGACTT+TGG + Chr3:19971320-19971339 MsG0380012570.01.T01:intron 30.0%
! TTTTATCCGTGCAAATTTGA+AGG + Chr3:19971862-19971881 MsG0380012570.01.T01:intron 30.0%
!! ACTTTGTATTCGTGTTTTGA+TGG - Chr3:19970837-19970856 None:intergenic 30.0%
!! ATATTTTCAGGAGATACACT+TGG + Chr3:19971963-19971982 MsG0380012570.01.T01:intron 30.0%
!! CCAAATGTGATTTTAACATG+AGG - Chr3:19971152-19971171 None:intergenic 30.0%
!! TATTTTCAGGAGATACACTT+GGG + Chr3:19971964-19971983 MsG0380012570.01.T01:intron 30.0%
!! TTTAATGAAAAAGTGCCCAA+TGG + Chr3:19973523-19973542 MsG0380012570.01.T01:CDS 30.0%
AATGGCATTGCAATAAAACC+TGG + Chr3:19972074-19972093 MsG0380012570.01.T01:CDS 35.0%
AGTTCTACTGCAATGAAGAA+TGG + Chr3:19972056-19972075 MsG0380012570.01.T01:CDS 35.0%
ATATTTGTCTACACTGGCAA+GGG + Chr3:19972635-19972654 MsG0380012570.01.T01:CDS 35.0%
ATTTGTCTGTAGAACCAGAA+AGG + Chr3:19971015-19971034 MsG0380012570.01.T01:intron 35.0%
CACAACCTATAACAATTGCA+TGG - Chr3:19972775-19972794 None:intergenic 35.0%
CTACAGATATTTGTCTACAC+TGG + Chr3:19972629-19972648 MsG0380012570.01.T01:intron 35.0%
GAGTATGCATAACAAGAACA+AGG - Chr3:19970926-19970945 None:intergenic 35.0%
GCACGTTAATAATTCCTTTG+AGG + Chr3:19972860-19972879 MsG0380012570.01.T01:CDS 35.0%
GGTTTAAAGGGTTTATATGC+AGG + Chr3:19972161-19972180 MsG0380012570.01.T01:CDS 35.0%
TTGAAAGATGCTACAGAGTA+CGG + Chr3:19972807-19972826 MsG0380012570.01.T01:CDS 35.0%
TTGTGTTTAGGTATAACGGT+TGG + Chr3:19973368-19973387 MsG0380012570.01.T01:intron 35.0%
TTTCTTCAATGAACGTTGCT+TGG + Chr3:19973144-19973163 MsG0380012570.01.T01:intron 35.0%
! AAAGAAGAAATCTTTGGAGG+AGG + Chr3:19973579-19973598 MsG0380012570.01.T01:CDS 35.0%
! CTAAAGCTTCTCTCTTTTGT+TGG + Chr3:19970985-19971004 MsG0380012570.01.T01:intron 35.0%
! TATGTTCAAAGGCATAACAC+TGG - Chr3:19972919-19972938 None:intergenic 35.0%
! TATTGTTCAGGCTTTTACAG+GGG + Chr3:19971382-19971401 MsG0380012570.01.T01:intron 35.0%
! TTGGCTGAAAACCTATTTTG+AGG + Chr3:19971222-19971241 MsG0380012570.01.T01:intron 35.0%
!! GTCAACTAAAAAGTGGATTG+AGG + Chr3:19971465-19971484 MsG0380012570.01.T01:CDS 35.0%
!! TGGCTGAAAACCTATTTTGA+GGG + Chr3:19971223-19971242 MsG0380012570.01.T01:intron 35.0%
AAAACTAGGCTGCAAGTTCA+GGG + Chr3:19973031-19973050 MsG0380012570.01.T01:CDS 40.0%
AACATTGATCGAACCACCAT+TGG - Chr3:19973542-19973561 None:intergenic 40.0%
AACCCAATAGTGAACTGTTG+TGG - Chr3:19972439-19972458 None:intergenic 40.0%
AACGCATTGAGTTACAGAAC+TGG + Chr3:19972692-19972711 MsG0380012570.01.T01:intron 40.0%
AAGGAGTTAAGGGGATGTTT+AGG + Chr3:19973422-19973441 MsG0380012570.01.T01:CDS 40.0%
AAGTATGGAGGGAGTTTGTA+TGG + Chr3:19970762-19970781 MsG0380012570.01.T01:CDS 40.0%
AAGTTCAGGGTTCAACTTTG+AGG + Chr3:19973044-19973063 MsG0380012570.01.T01:CDS 40.0%
ACACATTCTTGAGTCACTCA+GGG + Chr3:19971599-19971618 MsG0380012570.01.T01:intron 40.0%
ACATTGATCGAACCACCATT+GGG - Chr3:19973541-19973560 None:intergenic 40.0%
AGCCACAACAGTTCACTATT+GGG + Chr3:19972434-19972453 MsG0380012570.01.T01:intron 40.0%
AGCTCAATATGCAGAACACA+GGG + Chr3:19972140-19972159 MsG0380012570.01.T01:CDS 40.0%
AGGAGTTAAGGGGATGTTTA+GGG + Chr3:19973423-19973442 MsG0380012570.01.T01:CDS 40.0%
AGTATGGAGGGAGTTTGTAT+GGG + Chr3:19970763-19970782 MsG0380012570.01.T01:CDS 40.0%
ATGCAGAACACAGGGTTTAA+AGG + Chr3:19972148-19972167 MsG0380012570.01.T01:CDS 40.0%
GATATTTGTCTACACTGGCA+AGG + Chr3:19972634-19972653 MsG0380012570.01.T01:intron 40.0%
GCGTTGTGTATAATACCATC+AGG - Chr3:19972677-19972696 None:intergenic 40.0%
GTTTAGGTATAACGGTTGGT+TGG + Chr3:19973372-19973391 MsG0380012570.01.T01:intron 40.0%
TACACATTCTTGAGTCACTC+AGG + Chr3:19971598-19971617 MsG0380012570.01.T01:intron 40.0%
TATAAAGGGATGTTCCATGC+AGG + Chr3:19972116-19972135 MsG0380012570.01.T01:CDS 40.0%
TGAAAGATGCTACAGAGTAC+GGG + Chr3:19972808-19972827 MsG0380012570.01.T01:CDS 40.0%
TGCAGAACACAGGGTTTAAA+GGG + Chr3:19972149-19972168 MsG0380012570.01.T01:CDS 40.0%
TTCAAGGCACAATTACATCC+TGG + Chr3:19972033-19972052 MsG0380012570.01.T01:CDS 40.0%
! TAATAATTCCTTTGAGGGCC+TGG + Chr3:19972866-19972885 MsG0380012570.01.T01:CDS 40.0%
! TACAACATATGGGCTAAGGA+AGG + Chr3:19973403-19973422 MsG0380012570.01.T01:CDS 40.0%
!! AATGAAAAAGTGCCCAATGG+TGG + Chr3:19973526-19973545 MsG0380012570.01.T01:CDS 40.0%
!! TGGAAGGTTGATGGATTAAG+AGG + Chr3:19971063-19971082 MsG0380012570.01.T01:CDS 40.0%
!!! CGTGTTTTGATGGTATCTAC+CGG - Chr3:19970827-19970846 None:intergenic 40.0%
AACGTTGCTTGGAACATGTC+TGG + Chr3:19973155-19973174 MsG0380012570.01.T01:intron 45.0%
AAGGCATATTGCAGATGGTG+CGG + Chr3:19971034-19971053 MsG0380012570.01.T01:CDS 45.0%
AATACCATCAGGCCAGCAAA+TGG - Chr3:19972666-19972685 None:intergenic 45.0%
ATACATGTGTACCTGCCATC+AGG + Chr3:19973109-19973128 MsG0380012570.01.T01:intron 45.0%
CAAAACTAGGCTGCAAGTTC+AGG + Chr3:19973030-19973049 MsG0380012570.01.T01:CDS 45.0%
CACATTCTTGAGTCACTCAG+GGG + Chr3:19971600-19971619 MsG0380012570.01.T01:intron 45.0%
CAGCTCAATATGCAGAACAC+AGG + Chr3:19972139-19972158 MsG0380012570.01.T01:CDS 45.0%
CATTTCATTGCTGGAGCTGT+TGG + Chr3:19971520-19971539 MsG0380012570.01.T01:CDS 45.0%
CCATCTGCAATATGCCTTTC+TGG - Chr3:19971032-19971051 None:intergenic 45.0%
CTTCATTGCAGTAGAACTCC+AGG - Chr3:19972054-19972073 None:intergenic 45.0%
CTTTGGACGTCGTCAAAACT+AGG + Chr3:19973017-19973036 MsG0380012570.01.T01:CDS 45.0%
GAATGTACCACGCAATTCTC+GGG - Chr3:19973456-19973475 None:intergenic 45.0%
GAGAAATTCCACAGCCATGA+AGG - Chr3:19973494-19973513 None:intergenic 45.0%
GAGAATTGCGTGGTACATTC+CGG + Chr3:19973456-19973475 MsG0380012570.01.T01:CDS 45.0%
GAGCCACAACAGTTCACTAT+TGG + Chr3:19972433-19972452 MsG0380012570.01.T01:intron 45.0%
GGAATGTACCACGCAATTCT+CGG - Chr3:19973457-19973476 None:intergenic 45.0%
GGAGTTAAGGGGATGTTTAG+GGG + Chr3:19973424-19973443 MsG0380012570.01.T01:CDS 45.0%
GTATGGAGGGAGTTTGTATG+GGG + Chr3:19970764-19970783 MsG0380012570.01.T01:CDS 45.0%
TACGTAATGCAATGCTGCTG+TGG + Chr3:19971830-19971849 MsG0380012570.01.T01:intron 45.0%
TGCATATCTCACCACTCCTT+TGG + Chr3:19973000-19973019 MsG0380012570.01.T01:CDS 45.0%
TGGGCTAAGGAAGGAGTTAA+GGG + Chr3:19973412-19973431 MsG0380012570.01.T01:CDS 45.0%
TTAAGTGGTATCCTGATGGC+AGG - Chr3:19973123-19973142 None:intergenic 45.0%
! ACGACAACTTATTGGTGCCT+AGG - Chr3:19972318-19972337 None:intergenic 45.0%
! ATGGGCTAAGGAAGGAGTTA+AGG + Chr3:19973411-19973430 MsG0380012570.01.T01:CDS 45.0%
! CCAGAAAGGCATATTGCAGA+TGG + Chr3:19971029-19971048 MsG0380012570.01.T01:CDS 45.0%
! CGACAACTTATTGGTGCCTA+GGG - Chr3:19972317-19972336 None:intergenic 45.0%
! GAGCTGTTGGTAAGCTGATT+TGG + Chr3:19971533-19971552 MsG0380012570.01.T01:intron 45.0%
! GCGACTGGTGCAACATATTT+TGG + Chr3:19971433-19971452 MsG0380012570.01.T01:CDS 45.0%
!! TTTTACAGGGGTGTAGTACC+TGG + Chr3:19971394-19971413 MsG0380012570.01.T01:CDS 45.0%
!!! CTAGTTTTGACGACGTCCAA+AGG - Chr3:19973019-19973038 None:intergenic 45.0%
!! AAATATATGATTATTATAAA+GGG + Chr3:19972102-19972121 MsG0380012570.01.T01:CDS 5.0%
AAGCAGCGCATGCAAGTTCA+AGG + Chr3:19972017-19972036 MsG0380012570.01.T01:CDS 50.0%
CACTGGGCACATTTCATTGC+TGG + Chr3:19971511-19971530 MsG0380012570.01.T01:CDS 50.0%
CAGCAATGAAATGTGCCCAG+TGG - Chr3:19971513-19971532 None:intergenic 50.0%
CAGCTAATCCTCCCAAAACC+AGG - Chr3:19972887-19972906 None:intergenic 50.0%
GAGGATTCACATCCTAGCCT+TGG + Chr3:19971484-19971503 MsG0380012570.01.T01:CDS 50.0%
GCAAGGGATGTACCATTTGC+TGG + Chr3:19972651-19972670 MsG0380012570.01.T01:CDS 50.0%
GGGCTAAGGAAGGAGTTAAG+GGG + Chr3:19973413-19973432 MsG0380012570.01.T01:CDS 50.0%
GTGAACTGTTGTGGCTCTTG+AGG - Chr3:19972430-19972449 None:intergenic 50.0%
GTTTGTATGGGGAGCTGTTG+CGG + Chr3:19970775-19970794 MsG0380012570.01.T01:CDS 50.0%
TGCATATTGAGCTGCCTGCA+TGG - Chr3:19972133-19972152 None:intergenic 50.0%
TGGGGAAGGAATGATGCATC+CGG + Chr3:19970805-19970824 MsG0380012570.01.T01:CDS 50.0%
TTTGACGACGTCCAAAGGAG+TGG - Chr3:19973014-19973033 None:intergenic 50.0%
TTTGTATGGGGAGCTGTTGC+GGG + Chr3:19970776-19970795 MsG0380012570.01.T01:CDS 50.0%
! CGCTGCTTTATCACTTCGCA+TGG - Chr3:19972005-19972024 None:intergenic 50.0%
! TGTACCATTTGCTGGCCTGA+TGG + Chr3:19972659-19972678 MsG0380012570.01.T01:CDS 50.0%
!! ATGAAGGTAAGCGCTGAAGC+CGG - Chr3:19973478-19973497 None:intergenic 50.0%
!! GATTCACATCCTAGCCTTGG+TGG + Chr3:19971487-19971506 MsG0380012570.01.T01:CDS 50.0%
!! GGTGTAGTACCTGGTGTTAC+TGG + Chr3:19971403-19971422 MsG0380012570.01.T01:CDS 50.0%
!! TCCTTTGAGGGCCTGGTTTT+GGG + Chr3:19972873-19972892 MsG0380012570.01.T01:CDS 50.0%
!! TTCCTTTGAGGGCCTGGTTT+TGG + Chr3:19972872-19972891 MsG0380012570.01.T01:CDS 50.0%
!!! CTGGTTTTGGGAGGATTAGC+TGG + Chr3:19972885-19972904 MsG0380012570.01.T01:CDS 50.0%
!!! GTTTTGGGAGGATTAGCTGG+TGG + Chr3:19972888-19972907 MsG0380012570.01.T01:CDS 50.0%
AGCGCTTACCTTCATGGCTG+TGG + Chr3:19973483-19973502 MsG0380012570.01.T01:CDS 55.0%
CAGAGTACGGGAAGCGAAGA+TGG + Chr3:19972820-19972839 MsG0380012570.01.T01:CDS 55.0%
CGGTCTGTCTGGAAGGTTGA+TGG + Chr3:19971054-19971073 MsG0380012570.01.T01:CDS 55.0%
GCAAGAGAGCCAGTAACACC+AGG - Chr3:19971415-19971434 None:intergenic 55.0%
GGCTTCAGCGCTTACCTTCA+TGG + Chr3:19973477-19973496 MsG0380012570.01.T01:CDS 55.0%
TCCCAAAACCAGGCCCTCAA+AGG - Chr3:19972877-19972896 None:intergenic 55.0%
! AGCTGTTGCGGGTGCTTTTG+GGG + Chr3:19970787-19970806 MsG0380012570.01.T01:CDS 55.0%
! GAGCTGTTGCGGGTGCTTTT+GGG + Chr3:19970786-19970805 MsG0380012570.01.T01:CDS 55.0%
!! GTTACTGGCTCTCTTGCGAC+TGG + Chr3:19971418-19971437 MsG0380012570.01.T01:CDS 55.0%
!!! TTTGAGGGCCTGGTTTTGGG+AGG + Chr3:19972876-19972895 MsG0380012570.01.T01:CDS 55.0%
AATGTGCCCAGTGGCCACCA+AGG - Chr3:19971504-19971523 None:intergenic 60.0%
GATGGTGCGGTCTGTCTGGA+AGG + Chr3:19971047-19971066 MsG0380012570.01.T01:CDS 60.0%
GTAGCGTCCCGAGAATTGCG+TGG + Chr3:19973446-19973465 MsG0380012570.01.T01:CDS 60.0%
TGCAGATGGTGCGGTCTGTC+TGG + Chr3:19971043-19971062 MsG0380012570.01.T01:CDS 60.0%
! GGAGCTGTTGCGGGTGCTTT+TGG + Chr3:19970785-19970804 MsG0380012570.01.T01:CDS 60.0%
!! ATCCTAGCCTTGGTGGCCAC+TGG + Chr3:19971494-19971513 MsG0380012570.01.T01:CDS 60.0%
!! GTTGCGGGTGCTTTTGGGGA+AGG + Chr3:19970791-19970810 MsG0380012570.01.T01:CDS 60.0%
!! TCCTAGCCTTGGTGGCCACT+GGG + Chr3:19971495-19971514 MsG0380012570.01.T01:CDS 60.0%
GCCCAGTGGCCACCAAGGCT+AGG - Chr3:19971499-19971518 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 19970728 19973609 19970728 ID=MsG0380012570.01;Name=MsG0380012570.01
Chr3 mRNA 19970728 19973609 19970728 ID=MsG0380012570.01.T01;Parent=MsG0380012570.01;Name=MsG0380012570.01.T01;_AED=0.43;_eAED=0.44;_QI=0|0|0|1|1|1|8|0|347
Chr3 exon 19970728 19970880 19970728 ID=MsG0380012570.01.T01:exon:3770;Parent=MsG0380012570.01.T01
Chr3 exon 19971027 19971084 19971027 ID=MsG0380012570.01.T01:exon:3769;Parent=MsG0380012570.01.T01
Chr3 exon 19971392 19971541 19971392 ID=MsG0380012570.01.T01:exon:3768;Parent=MsG0380012570.01.T01
Chr3 exon 19971973 19972183 19971973 ID=MsG0380012570.01.T01:exon:3767;Parent=MsG0380012570.01.T01
Chr3 exon 19972635 19972680 19972635 ID=MsG0380012570.01.T01:exon:3766;Parent=MsG0380012570.01.T01
Chr3 exon 19972789 19972909 19972789 ID=MsG0380012570.01.T01:exon:3765;Parent=MsG0380012570.01.T01
Chr3 exon 19972993 19973065 19972993 ID=MsG0380012570.01.T01:exon:3764;Parent=MsG0380012570.01.T01
Chr3 exon 19973378 19973609 19973378 ID=MsG0380012570.01.T01:exon:3763;Parent=MsG0380012570.01.T01
Chr3 CDS 19970728 19970880 19970728 ID=MsG0380012570.01.T01:cds;Parent=MsG0380012570.01.T01
Chr3 CDS 19971027 19971084 19971027 ID=MsG0380012570.01.T01:cds;Parent=MsG0380012570.01.T01
Chr3 CDS 19971392 19971541 19971392 ID=MsG0380012570.01.T01:cds;Parent=MsG0380012570.01.T01
Chr3 CDS 19971973 19972183 19971973 ID=MsG0380012570.01.T01:cds;Parent=MsG0380012570.01.T01
Chr3 CDS 19972635 19972680 19972635 ID=MsG0380012570.01.T01:cds;Parent=MsG0380012570.01.T01
Chr3 CDS 19972789 19972909 19972789 ID=MsG0380012570.01.T01:cds;Parent=MsG0380012570.01.T01
Chr3 CDS 19972993 19973065 19972993 ID=MsG0380012570.01.T01:cds;Parent=MsG0380012570.01.T01
Chr3 CDS 19973378 19973609 19973378 ID=MsG0380012570.01.T01:cds;Parent=MsG0380012570.01.T01
Gene Sequence

>MsG0380012570.01.T01

ATGATTATAACTAATTTACTGTATTATGATATTGAAGTATGGAGGGAGTTTGTATGGGGAGCTGTTGCGGGTGCTTTTGGGGAAGGAATGATGCATCCGGTAGATACCATCAAAACACGAATACAAAGTCAAGCTATTCTAAATGGTGTTAAGAACCAGAAAGGCATATTGCAGATGGTGCGGTCTGTCTGGAAGGTTGATGGATTAAGAGGCTTTTACAGGGGTGTAGTACCTGGTGTTACTGGCTCTCTTGCGACTGGTGCAACATATTTTGGTGTCATAGAGTCAACTAAAAAGTGGATTGAGGATTCACATCCTAGCCTTGGTGGCCACTGGGCACATTTCATTGCTGGAGCTGTTGGAGATACACTTGGGTCTGTAGTATACGTTCCATGCGAAGTGATAAAGCAGCGCATGCAAGTTCAAGGCACAATTACATCCTGGAGTTCTACTGCAATGAAGAATGGCATTGCAATAAAACCTGGTGCAGAAATATATGATTATTATAAAGGGATGTTCCATGCAGGCAGCTCAATATGCAGAACACAGGGTTTAAAGGGTTTATATGCAGGATATTTGTCTACACTGGCAAGGGATGTACCATTTGCTGGCCTGATGGTTGTGTTCTATGAAGCTTTGAAAGATGCTACAGAGTACGGGAAGCGAAGATGGATATCTAATCCAAATTGGCACGTTAATAATTCCTTTGAGGGCCTGGTTTTGGGAGGATTAGCTGGTGGTCTCAGTGCATATCTCACCACTCCTTTGGACGTCGTCAAAACTAGGCTGCAAGTTCAGGGTTCAACTTTGAGGTATAACGGTTGGTTGGATGCAATTTACAACATATGGGCTAAGGAAGGAGTTAAGGGGATGTTTAGGGGTAGCGTCCCGAGAATTGCGTGGTACATTCCGGCTTCAGCGCTTACCTTCATGGCTGTGGAATTTCTCAGAGAAAATTTTAATGAAAAAGTGCCCAATGGTGGTTCGATCAATGTTGCTAGAGTATCAGTAGAAAAGAAGAAATCTTTGGAGGAGGCTAGTTAA

Protein sequence

>MsG0380012570.01.T01

MIITNLLYYDIEVWREFVWGAVAGAFGEGMMHPVDTIKTRIQSQAILNGVKNQKGILQMVRSVWKVDGLRGFYRGVVPGVTGSLATGATYFGVIESTKKWIEDSHPSLGGHWAHFIAGAVGDTLGSVVYVPCEVIKQRMQVQGTITSWSSTAMKNGIAIKPGAEIYDYYKGMFHAGSSICRTQGLKGLYAGYLSTLARDVPFAGLMVVFYEALKDATEYGKRRWISNPNWHVNNSFEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTLRYNGWLDAIYNIWAKEGVKGMFRGSVPRIAWYIPASALTFMAVEFLRENFNEKVPNGGSINVARVSVEKKKSLEEAS*