AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039955.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039955.01.T01 MTR_7g082240 91.700 253 16 3 1 250 1 251 2.74e-167 462
MsG0780039955.01.T01 MTR_8g095500 87.764 237 21 3 14 250 15 243 1.02e-147 412
MsG0780039955.01.T01 MTR_8g085910 59.184 196 80 0 55 250 17 212 9.35e-84 249
MsG0780039955.01.T01 MTR_8g103890 51.759 199 96 0 48 246 57 255 3.01e-76 232
MsG0780039955.01.T01 MTR_8g103890 58.571 140 58 0 48 187 57 196 8.43e-59 185
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039955.01.T01 AT5G16140 73.832 214 55 1 37 250 28 240 4.56e-119 340
MsG0780039955.01.T01 AT5G16140 73.832 214 55 1 37 250 28 240 4.56e-119 340
MsG0780039955.01.T01 AT5G38290 63.200 250 88 1 1 250 5 250 5.49e-114 327
MsG0780039955.01.T01 AT5G38290 63.200 250 88 1 1 250 1 246 5.57e-114 327
MsG0780039955.01.T01 AT5G19830 57.868 197 83 0 53 249 16 212 5.69e-82 245
MsG0780039955.01.T01 AT1G18440 55.914 186 82 0 55 240 94 279 1.19e-78 239
MsG0780039955.01.T01 AT1G18440 61.905 105 40 0 55 159 94 198 4.10e-45 151

Find 65 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAAACCCTCCTGGAACTA+TGG 0.238093 7:-71067989 MsG0780039955.01.T01:CDS
TTGATATGTACAGGTTCTAT+TGG 0.279222 7:-71069117 MsG0780039955.01.T01:intron
CATGTCAATAGATTCAATTT+AGG 0.292948 7:-71067466 MsG0780039955.01.T01:CDS
ATGTCAATAGATTCAATTTA+GGG 0.304320 7:-71067465 MsG0780039955.01.T01:CDS
GTGCCATGGTATTTATTTCC+AGG 0.314037 7:+71069551 None:intergenic
TCCTTGGCTTGTTGTTGGCT+TGG 0.320294 7:-71069579 MsG0780039955.01.T01:CDS
TGATGCCCATGTCCACCTTT+AGG 0.328247 7:+71068647 None:intergenic
CCTTGGCTTGTTGTTGGCTT+GGG 0.334876 7:-71069578 MsG0780039955.01.T01:CDS
TGAAGCTTTAAAACACCATT+TGG 0.358207 7:+71068671 None:intergenic
CTTTAACCTATCCCAGTAGA+AGG 0.376903 7:-71069709 MsG0780039955.01.T01:CDS
AAATACTTACCACTAGAATA+TGG 0.382387 7:+71068798 None:intergenic
TGAGGTTTCGCCAACAAAAC+TGG 0.384292 7:+71069087 None:intergenic
CTAAAATTCATGTATGTTTG+AGG 0.385508 7:+71069069 None:intergenic
GCTCTTAAATCCATAGTTCC+AGG 0.394847 7:+71067979 None:intergenic
TATACTCCTTGGCTTGTTGT+TGG 0.402188 7:-71069584 MsG0780039955.01.T01:CDS
AAATAATTGATAGTCTTTCT+CGG 0.408351 7:-71069277 MsG0780039955.01.T01:CDS
ATGGCAGGTTGATGAGTCAT+TGG 0.410508 7:-71067539 MsG0780039955.01.T01:intron
ATACAATCAAAAGCCTTGAT+TGG 0.421146 7:-71069230 MsG0780039955.01.T01:CDS
ATAATGAAAGTTCCTTCTAC+TGG 0.425882 7:+71069697 None:intergenic
TTAAGACCTTAGTGCTCAAT+GGG 0.429285 7:-71067498 MsG0780039955.01.T01:CDS
TCAAAAGCCTTGATTGGAAT+AGG 0.438540 7:-71069224 MsG0780039955.01.T01:intron
GTTAAGACCTTAGTGCTCAA+TGG 0.445730 7:-71067499 MsG0780039955.01.T01:CDS
CTTTCTCTTCTCCACTCACT+CGG 0.459861 7:-71069910 MsG0780039955.01.T01:five_prime_UTR
AATTGAATCTATTGACATGA+TGG 0.460838 7:+71067470 None:intergenic
GTAGGAATCGGAAACCCTCC+TGG 0.472720 7:-71067997 MsG0780039955.01.T01:intron
AAAGTTCCTTCTACTGGGAT+AGG 0.473181 7:+71069703 None:intergenic
TGCCATGGTATTTATTTCCA+GGG 0.492429 7:+71069552 None:intergenic
CTTCAACCTAAAGGTGGACA+TGG 0.505877 7:-71068653 MsG0780039955.01.T01:CDS
TCTACAAAAGTTCAGTTCAG+TGG 0.508418 7:-71067950 MsG0780039955.01.T01:CDS
CAGTTCAGTGGAAAGAAAGC+AGG 0.510677 7:-71067938 MsG0780039955.01.T01:intron
GTGGACATGGGCATCACAAT+GGG 0.516901 7:-71068640 MsG0780039955.01.T01:intron
CAATGGAGATACTAATAAAG+TGG 0.520031 7:-71069609 MsG0780039955.01.T01:CDS
GGATAGGTTAAAGATAAGGT+TGG 0.522902 7:+71069719 None:intergenic
ACTGGGATAGGTTAAAGATA+AGG 0.523092 7:+71069715 None:intergenic
GTTGTTGGCTTGGGTAACCC+TGG 0.525883 7:-71069569 MsG0780039955.01.T01:CDS
ATAAAGTGGAATATACTCCT+TGG 0.537329 7:-71069595 MsG0780039955.01.T01:CDS
GCACGCACCTATTCCAATCA+AGG 0.543862 7:+71069217 None:intergenic
AATGTGATTGGCCATTTGGA+TGG 0.549742 7:-71068135 MsG0780039955.01.T01:CDS
GATAGTCTTTCTCGGTCAGA+AGG 0.550469 7:-71069269 MsG0780039955.01.T01:CDS
GCTTTAAAACACCATTTGGA+AGG 0.554239 7:+71068675 None:intergenic
GATGAAACTAGCCTTCCAAA+TGG 0.554723 7:-71068686 MsG0780039955.01.T01:CDS
GTTAAACCCATTGAGCACTA+AGG 0.557059 7:+71067492 None:intergenic
AGCATACACAATGTGGTAAG+TGG 0.565442 7:+71067361 None:intergenic
CTGTTGAACCGAACAATGAA+CGG 0.566423 7:+71069640 None:intergenic
TAATGAAAGTTCCTTCTACT+GGG 0.572140 7:+71069698 None:intergenic
TTAAAGCTTCAACCTAAAGG+TGG 0.579023 7:-71068659 MsG0780039955.01.T01:CDS
GGTGGACATGGGCATCACAA+TGG 0.579435 7:-71068641 MsG0780039955.01.T01:CDS
AATCACGAGAACCATCCAAA+TGG 0.582644 7:+71068124 None:intergenic
CCCAAGCCAACAACAAGCCA+AGG 0.596759 7:+71069578 None:intergenic
TACCACTAGAATATGGCGCA+AGG 0.599906 7:+71068805 None:intergenic
ACTCGATAATATGCAGCAAG+AGG 0.600246 7:+71068830 None:intergenic
GTGGAGAAGAGAAAGCGAAG+AGG 0.602770 7:+71069918 None:intergenic
CTGAATAGTAGCCGAGTGAG+TGG 0.605011 7:+71069899 None:intergenic
TTACATTGTGTCTAGTGCCA+TGG 0.610008 7:+71069537 None:intergenic
TTAAATCCATAGTTCCAGGA+GGG 0.631727 7:+71067983 None:intergenic
AACTAACCGATTGCAAGTCG+AGG 0.636266 7:+71068099 None:intergenic
AATGTGGTAAGTGGTAAACA+TGG 0.637460 7:+71067370 None:intergenic
GTTGATGAGTCATTGGAGCA+AGG 0.639313 7:-71067532 MsG0780039955.01.T01:CDS
GCCCTTGCGCCATATTCTAG+TGG 0.639540 7:-71068807 MsG0780039955.01.T01:intron
GTTCAACAGACAAATAACAA+TGG 0.645690 7:-71069626 MsG0780039955.01.T01:CDS
TTCAACCTAAAGGTGGACAT+GGG 0.647848 7:-71068652 MsG0780039955.01.T01:CDS
AACCCTGGAAATAAATACCA+TGG 0.650251 7:-71069554 MsG0780039955.01.T01:CDS
ACCACTAGAATATGGCGCAA+GGG 0.651637 7:+71068806 None:intergenic
GAATGCTAGCATACACAATG+TGG 0.683766 7:+71067354 None:intergenic
CTTAAATCCATAGTTCCAGG+AGG 0.685463 7:+71067982 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAAGAAAACAGTAT+TGG + Chr7:71069726-71069745 None:intergenic 15.0%
!! ATCAATTCAAATACAAAAAA+AGG + Chr7:71069702-71069721 None:intergenic 15.0%
!! CAATAATTAAAACAAATGAA+TGG + Chr7:71067784-71067803 None:intergenic 15.0%
!! TTTAATAATTTGATATGTAC+AGG - Chr7:71068164-71068183 MsG0780039955.01.T01:intron 15.0%
!!! CATTCATTTGTTTTAATTAT+TGG - Chr7:71067782-71067801 MsG0780039955.01.T01:intron 15.0%
!!! CTCATTTTTAATATTGTTAA+AGG - Chr7:71068432-71068451 MsG0780039955.01.T01:intron 15.0%
!!! TTTTAATATTGTTAAAGGTT+GGG - Chr7:71068437-71068456 MsG0780039955.01.T01:intron 15.0%
!!! TTTTTAATATTGTTAAAGGT+TGG - Chr7:71068436-71068455 MsG0780039955.01.T01:intron 15.0%
!! ATGTCAATAGATTCAATTTA+GGG - Chr7:71069825-71069844 MsG0780039955.01.T01:intron 20.0%
!! CTATAATAACAAAAAACTAG+TGG + Chr7:71069893-71069912 None:intergenic 20.0%
!! TTTCTAATAACATGGTTATT+AGG - Chr7:71068687-71068706 MsG0780039955.01.T01:CDS 20.0%
!!! AAACATACATGAATTTTAGT+GGG - Chr7:71068225-71068244 MsG0780039955.01.T01:intron 20.0%
!!! AAATAATTGATAGTCTTTCT+CGG - Chr7:71068013-71068032 MsG0780039955.01.T01:intron 20.0%
!!! CTTTTTATTTTTTTAATGGC+AGG - Chr7:71069736-71069755 MsG0780039955.01.T01:CDS 20.0%
!!! TTGTTGTATTTCTAATAACA+TGG - Chr7:71068679-71068698 MsG0780039955.01.T01:CDS 20.0%
! AAATACTTACCACTAGAATA+TGG + Chr7:71068495-71068514 None:intergenic 25.0%
! AATTGAATCTATTGACATGA+TGG + Chr7:71069823-71069842 None:intergenic 25.0%
! CATGTCAATAGATTCAATTT+AGG - Chr7:71069824-71069843 MsG0780039955.01.T01:intron 25.0%
! CTAAAATTCATGTATGTTTG+AGG + Chr7:71068224-71068243 None:intergenic 25.0%
! CTAAATATGTCAAGAAAACA+AGG + Chr7:71069045-71069064 None:intergenic 25.0%
! TACAGATTGAAAAATGTGAT+TGG - Chr7:71069143-71069162 MsG0780039955.01.T01:intron 25.0%
! TATACTCTGATAAACAACTA+AGG + Chr7:71069250-71069269 None:intergenic 25.0%
! TCCATAGATAAGAACAATTT+AGG - Chr7:71069490-71069509 MsG0780039955.01.T01:intron 25.0%
! TCCTAAATTGTTCTTATCTA+TGG + Chr7:71069494-71069513 None:intergenic 25.0%
! TTACTTCATGAATAATGAGA+TGG - Chr7:71068779-71068798 MsG0780039955.01.T01:intron 25.0%
! TTTATGGATAATACAAAGAC+TGG - Chr7:71069002-71069021 MsG0780039955.01.T01:intron 25.0%
!! AAGTTGCATTTTTACTTTGT+AGG - Chr7:71069275-71069294 MsG0780039955.01.T01:CDS 25.0%
!! ACAATTTAGGATTTAGTTTC+TGG - Chr7:71069503-71069522 MsG0780039955.01.T01:intron 25.0%
!! CAAACATACATGAATTTTAG+TGG - Chr7:71068224-71068243 MsG0780039955.01.T01:intron 25.0%
!! CATTTTTACTTTGTAGGAAT+CGG - Chr7:71069281-71069300 MsG0780039955.01.T01:CDS 25.0%
!! GTTTGTGGAAATTTTTATGT+AGG - Chr7:71068576-71068595 MsG0780039955.01.T01:intron 25.0%
!! TCTGAACTTGTATGATTTTA+TGG - Chr7:71068986-71069005 MsG0780039955.01.T01:intron 25.0%
!! TTGTACTTAATCTGATTTTG+TGG - Chr7:71067966-71067985 MsG0780039955.01.T01:CDS 25.0%
!!! AACATACATGAATTTTAGTG+GGG - Chr7:71068226-71068245 MsG0780039955.01.T01:intron 25.0%
AAACACTTTAAGTGCATGTT+TGG + Chr7:71067928-71067947 None:intergenic 30.0%
ACCAGTTATAGACTTCATAA+TGG + Chr7:71069112-71069131 None:intergenic 30.0%
AGCAAATTATAAGTTAGACC+AGG - Chr7:71069577-71069596 MsG0780039955.01.T01:CDS 30.0%
ATAAAGTGGAATATACTCCT+TGG - Chr7:71067695-71067714 MsG0780039955.01.T01:intron 30.0%
ATAATGAAAGTTCCTTCTAC+TGG + Chr7:71067596-71067615 None:intergenic 30.0%
ATACAATCAAAAGCCTTGAT+TGG - Chr7:71068060-71068079 MsG0780039955.01.T01:intron 30.0%
CAATGGAGATACTAATAAAG+TGG - Chr7:71067681-71067700 MsG0780039955.01.T01:intron 30.0%
CATTAACCAAAAATATGCGA+GGG + Chr7:71067430-71067449 None:intergenic 30.0%
CCAGTTATAGACTTCATAAT+GGG + Chr7:71069111-71069130 None:intergenic 30.0%
GATTCTGTTTAGATACAGTT+TGG - Chr7:71068523-71068542 MsG0780039955.01.T01:intron 30.0%
GTTCAACAGACAAATAACAA+TGG - Chr7:71067664-71067683 MsG0780039955.01.T01:intron 30.0%
TAATGAAAGTTCCTTCTACT+GGG + Chr7:71067595-71067614 None:intergenic 30.0%
TATATAGCGAAATGTAATGC+CGG + Chr7:71069071-71069090 None:intergenic 30.0%
TCAATGTTGCAATTAACCAT+TGG + Chr7:71068138-71068157 None:intergenic 30.0%
TTCTTGACATATTTAGAAGC+CGG - Chr7:71069049-71069068 MsG0780039955.01.T01:intron 30.0%
TTGATATGTACAGGTTCTAT+TGG - Chr7:71068173-71068192 MsG0780039955.01.T01:intron 30.0%
TTTCCACAAACTTAAAGTCA+AGG + Chr7:71068567-71068586 None:intergenic 30.0%
! ATCATTTTCCGTTCATTGTT+CGG - Chr7:71067642-71067661 MsG0780039955.01.T01:intron 30.0%
! TTTCCTTGACTTTAAGTTTG+TGG - Chr7:71068561-71068580 MsG0780039955.01.T01:intron 30.0%
! TTTTGTGGATTCTCTATGTT+AGG - Chr7:71067981-71068000 MsG0780039955.01.T01:CDS 30.0%
!! GACTCATTAATTTGTAAACC+TGG - Chr7:71068868-71068887 MsG0780039955.01.T01:intron 30.0%
!! GATGTTTTAAGTGAATAACG+AGG + Chr7:71067619-71067638 None:intergenic 30.0%
!! TGAAGCTTTAAAACACCATT+TGG + Chr7:71068622-71068641 None:intergenic 30.0%
!!! GTTTTAAAGCTTCAACCTAA+AGG - Chr7:71068628-71068647 MsG0780039955.01.T01:intron 30.0%
AACCCTGGAAATAAATACCA+TGG - Chr7:71067736-71067755 MsG0780039955.01.T01:intron 35.0%
AATGTGGTAAGTGGTAAACA+TGG + Chr7:71069923-71069942 None:intergenic 35.0%
ACACTTGATAGAAGACTAGA+AGG + Chr7:71069383-71069402 None:intergenic 35.0%
ACTGGGATAGGTTAAAGATA+AGG + Chr7:71067578-71067597 None:intergenic 35.0%
AGAATTCTACATGTTACCCA+TGG + Chr7:71068912-71068931 None:intergenic 35.0%
AGTTACTTGAATCTTGCCAT+GGG - Chr7:71068893-71068912 MsG0780039955.01.T01:intron 35.0%
CAACTGTCTAAATATTTGCC+TGG + Chr7:71069598-71069617 None:intergenic 35.0%
CAAGATTCAAGTAACTATCC+AGG + Chr7:71068889-71068908 None:intergenic 35.0%
CAGGCAAATATTTAGACAGT+TGG - Chr7:71069596-71069615 MsG0780039955.01.T01:CDS 35.0%
CCATTAACCAAAAATATGCG+AGG + Chr7:71067431-71067450 None:intergenic 35.0%
CCCATTATGAAGTCTATAAC+TGG - Chr7:71069108-71069127 MsG0780039955.01.T01:intron 35.0%
GGATAGGTTAAAGATAAGGT+TGG + Chr7:71067574-71067593 None:intergenic 35.0%
GGTAATAAACCTGAAAACTG+TGG - Chr7:71069644-71069663 MsG0780039955.01.T01:CDS 35.0%
TAGTTACTTGAATCTTGCCA+TGG - Chr7:71068892-71068911 MsG0780039955.01.T01:intron 35.0%
TCAAAAGCCTTGATTGGAAT+AGG - Chr7:71068066-71068085 MsG0780039955.01.T01:intron 35.0%
TCTACAAAAGTTCAGTTCAG+TGG - Chr7:71069340-71069359 MsG0780039955.01.T01:intron 35.0%
TGCCATGGTATTTATTTCCA+GGG + Chr7:71067741-71067760 None:intergenic 35.0%
TGTTGCAATTAACCATTGGA+AGG + Chr7:71068134-71068153 None:intergenic 35.0%
TTAAAGCTTCAACCTAAAGG+TGG - Chr7:71068631-71068650 MsG0780039955.01.T01:intron 35.0%
TTAAATCCATAGTTCCAGGA+GGG + Chr7:71069310-71069329 None:intergenic 35.0%
TTAAGACCTTAGTGCTCAAT+GGG - Chr7:71069792-71069811 MsG0780039955.01.T01:intron 35.0%
! GAAAAATGTGATTGGCCATT+TGG - Chr7:71069151-71069170 MsG0780039955.01.T01:intron 35.0%
!! CATGAATTTTAGTGGGGAAT+CGG - Chr7:71068232-71068251 MsG0780039955.01.T01:intron 35.0%
!! GACTTCATAATGGGTATAAG+AGG + Chr7:71069102-71069121 None:intergenic 35.0%
!! GCTTTAAAACACCATTTGGA+AGG + Chr7:71068618-71068637 None:intergenic 35.0%
!! TTTGCTATTGAACCTTCCAA+TGG - Chr7:71068119-71068138 MsG0780039955.01.T01:CDS 35.0%
!!! CCTCGCATATTTTTGGTTAA+TGG - Chr7:71067428-71067447 MsG0780039955.01.T01:exon 35.0%
AAAGTTCCTTCTACTGGGAT+AGG + Chr7:71067590-71067609 None:intergenic 40.0%
AATCACGAGAACCATCCAAA+TGG + Chr7:71069169-71069188 None:intergenic 40.0%
ACACACACACACACTGAAAT+TGG - Chr7:71068302-71068321 MsG0780039955.01.T01:intron 40.0%
ACACACACTGAAATTGGTCA+TGG - Chr7:71068308-71068327 MsG0780039955.01.T01:intron 40.0%
ACCTACAAAAGCAATAGGAG+GGG - Chr7:71069623-71069642 MsG0780039955.01.T01:CDS 40.0%
ACTCGATAATATGCAGCAAG+AGG + Chr7:71068463-71068482 None:intergenic 40.0%
AGCATACACAATGTGGTAAG+TGG + Chr7:71069932-71069951 None:intergenic 40.0%
CTGTTGAACCGAACAATGAA+CGG + Chr7:71067653-71067672 None:intergenic 40.0%
CTTAAATCCATAGTTCCAGG+AGG + Chr7:71069311-71069330 None:intergenic 40.0%
CTTTAACCTATCCCAGTAGA+AGG - Chr7:71067581-71067600 MsG0780039955.01.T01:intron 40.0%
GAATGCTAGCATACACAATG+TGG + Chr7:71069939-71069958 None:intergenic 40.0%
GACCTACAAAAGCAATAGGA+GGG - Chr7:71069622-71069641 MsG0780039955.01.T01:CDS 40.0%
GCTCTTAAATCCATAGTTCC+AGG + Chr7:71069314-71069333 None:intergenic 40.0%
GTGCCATGGTATTTATTTCC+AGG + Chr7:71067742-71067761 None:intergenic 40.0%
GTGGATTCTCTATGTTAGGT+TGG - Chr7:71067985-71068004 MsG0780039955.01.T01:CDS 40.0%
GTGTGACCTACAAAAGCAAT+AGG - Chr7:71069618-71069637 MsG0780039955.01.T01:CDS 40.0%
GTTAAACCCATTGAGCACTA+AGG + Chr7:71069801-71069820 None:intergenic 40.0%
GTTAAGACCTTAGTGCTCAA+TGG - Chr7:71069791-71069810 MsG0780039955.01.T01:intron 40.0%
TGACCTACAAAAGCAATAGG+AGG - Chr7:71069621-71069640 MsG0780039955.01.T01:CDS 40.0%
TTACATTGTGTCTAGTGCCA+TGG + Chr7:71067756-71067775 None:intergenic 40.0%
TTCAACCTAAAGGTGGACAT+GGG - Chr7:71068638-71068657 MsG0780039955.01.T01:intron 40.0%
! AATGTGATTGGCCATTTGGA+TGG - Chr7:71069155-71069174 MsG0780039955.01.T01:intron 40.0%
! ATCTTAGTGCCACAGTTTTC+AGG + Chr7:71069656-71069675 None:intergenic 40.0%
! TGCTTTCCCTCGCATATTTT+TGG - Chr7:71067421-71067440 MsG0780039955.01.T01:exon 40.0%
!! CATAATGGGTATAAGAGGAG+AGG + Chr7:71069097-71069116 None:intergenic 40.0%
!! GATGAAACTAGCCTTCCAAA+TGG - Chr7:71068604-71068623 MsG0780039955.01.T01:intron 40.0%
!! GATTTTCCTCGACTTGCAAT+CGG - Chr7:71069185-71069204 MsG0780039955.01.T01:intron 40.0%
!! TATACTCCTTGGCTTGTTGT+TGG - Chr7:71067706-71067725 MsG0780039955.01.T01:intron 40.0%
!!! TGGAGAAGTACCAGTTTTGT+TGG - Chr7:71068193-71068212 MsG0780039955.01.T01:intron 40.0%
AACTAACCGATTGCAAGTCG+AGG + Chr7:71069194-71069213 None:intergenic 45.0%
ACCACTAGAATATGGCGCAA+GGG + Chr7:71068487-71068506 None:intergenic 45.0%
CAGTTCAGTGGAAAGAAAGC+AGG - Chr7:71069352-71069371 MsG0780039955.01.T01:intron 45.0%
CTTCAACCTAAAGGTGGACA+TGG - Chr7:71068637-71068656 MsG0780039955.01.T01:intron 45.0%
CTTTCTCTTCTCCACTCACT+CGG - Chr7:71067380-71067399 MsG0780039955.01.T01:three_prime_UTR 45.0%
GATAGTCTTTCTCGGTCAGA+AGG - Chr7:71068021-71068040 MsG0780039955.01.T01:intron 45.0%
TACCACTAGAATATGGCGCA+AGG + Chr7:71068488-71068507 None:intergenic 45.0%
TGAGGTTTCGCCAACAAAAC+TGG + Chr7:71068206-71068225 None:intergenic 45.0%
! GTTGATGAGTCATTGGAGCA+AGG - Chr7:71069758-71069777 MsG0780039955.01.T01:intron 45.0%
!! ACCCCTCCTATTGCTTTTGT+AGG + Chr7:71069627-71069646 None:intergenic 45.0%
!! ATGGCAGGTTGATGAGTCAT+TGG - Chr7:71069751-71069770 MsG0780039955.01.T01:intron 45.0%
!!! TTTTCTTTTTATTTTTTTAA+TGG - Chr7:71069732-71069751 MsG0780039955.01.T01:CDS 5.0%
CTGAATAGTAGCCGAGTGAG+TGG + Chr7:71067394-71067413 None:intergenic 50.0%
GCACGCACCTATTCCAATCA+AGG + Chr7:71068076-71068095 None:intergenic 50.0%
GTGGACATGGGCATCACAAT+GGG - Chr7:71068650-71068669 MsG0780039955.01.T01:CDS 50.0%
GTGGAGAAGAGAAAGCGAAG+AGG + Chr7:71067375-71067394 None:intergenic 50.0%
TGATGCCCATGTCCACCTTT+AGG + Chr7:71068646-71068665 None:intergenic 50.0%
!! CCTTGGCTTGTTGTTGGCTT+GGG - Chr7:71067712-71067731 MsG0780039955.01.T01:intron 50.0%
!! TCCTTGGCTTGTTGTTGGCT+TGG - Chr7:71067711-71067730 MsG0780039955.01.T01:intron 50.0%
CCCAAGCCAACAACAAGCCA+AGG + Chr7:71067715-71067734 None:intergenic 55.0%
CGGAAACCCTCCTGGAACTA+TGG - Chr7:71069301-71069320 MsG0780039955.01.T01:intron 55.0%
GCCCTTGCGCCATATTCTAG+TGG - Chr7:71068483-71068502 MsG0780039955.01.T01:intron 55.0%
GGTGGACATGGGCATCACAA+TGG - Chr7:71068649-71068668 MsG0780039955.01.T01:CDS 55.0%
GTAGGAATCGGAAACCCTCC+TGG - Chr7:71069293-71069312 MsG0780039955.01.T01:intron 55.0%
!! GTTGTTGGCTTGGGTAACCC+TGG - Chr7:71067721-71067740 MsG0780039955.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 71067352 71069960 71067352 ID=MsG0780039955.01;Name=MsG0780039955.01
Chr7 mRNA 71067352 71069960 71067352 ID=MsG0780039955.01.T01;Parent=MsG0780039955.01;Name=MsG0780039955.01.T01;_AED=0.39;_eAED=0.39;_QI=102|1|1|1|0.87|0.77|9|86|250
Chr7 exon 71067352 71067554 71067352 ID=MsG0780039955.01.T01:exon:13662;Parent=MsG0780039955.01.T01
Chr7 exon 71067939 71068015 71067939 ID=MsG0780039955.01.T01:exon:13661;Parent=MsG0780039955.01.T01
Chr7 exon 71068106 71068164 71068106 ID=MsG0780039955.01.T01:exon:13660;Parent=MsG0780039955.01.T01
Chr7 exon 71068641 71068714 71068641 ID=MsG0780039955.01.T01:exon:13659;Parent=MsG0780039955.01.T01
Chr7 exon 71068808 71068858 71068808 ID=MsG0780039955.01.T01:exon:13658;Parent=MsG0780039955.01.T01
Chr7 exon 71069059 71069126 71069059 ID=MsG0780039955.01.T01:exon:13657;Parent=MsG0780039955.01.T01
Chr7 exon 71069225 71069309 71069225 ID=MsG0780039955.01.T01:exon:13656;Parent=MsG0780039955.01.T01
Chr7 exon 71069541 71069766 71069541 ID=MsG0780039955.01.T01:exon:13655;Parent=MsG0780039955.01.T01
Chr7 exon 71069863 71069960 71069863 ID=MsG0780039955.01.T01:exon:13654;Parent=MsG0780039955.01.T01
Chr7 five_prime_UTR 71069863 71069960 71069863 ID=MsG0780039955.01.T01:five_prime_utr;Parent=MsG0780039955.01.T01
Chr7 five_prime_UTR 71069763 71069766 71069763 ID=MsG0780039955.01.T01:five_prime_utr;Parent=MsG0780039955.01.T01
Chr7 CDS 71069541 71069762 71069541 ID=MsG0780039955.01.T01:cds;Parent=MsG0780039955.01.T01
Chr7 CDS 71069225 71069309 71069225 ID=MsG0780039955.01.T01:cds;Parent=MsG0780039955.01.T01
Chr7 CDS 71069059 71069126 71069059 ID=MsG0780039955.01.T01:cds;Parent=MsG0780039955.01.T01
Chr7 CDS 71068808 71068858 71068808 ID=MsG0780039955.01.T01:cds;Parent=MsG0780039955.01.T01
Chr7 CDS 71068641 71068714 71068641 ID=MsG0780039955.01.T01:cds;Parent=MsG0780039955.01.T01
Chr7 CDS 71068106 71068164 71068106 ID=MsG0780039955.01.T01:cds;Parent=MsG0780039955.01.T01
Chr7 CDS 71067939 71068015 71067939 ID=MsG0780039955.01.T01:cds;Parent=MsG0780039955.01.T01
Chr7 CDS 71067438 71067554 71067438 ID=MsG0780039955.01.T01:cds;Parent=MsG0780039955.01.T01
Chr7 three_prime_UTR 71067352 71067437 71067352 ID=MsG0780039955.01.T01:three_prime_utr;Parent=MsG0780039955.01.T01
Gene Sequence

>MsG0780039955.01.T01

ATGTTGCATCTTGCATCTTCTCCAACCTTATCTTTAACCTATCCCAGTAGAAGGAACTTTCATTATCCTCGTTATTCACTTAAAACATCATCATCATTTTCCGTTCATTGTTCGGTTCAACAGACAAATAACAATGGAGATACTAATAAAGTGGAATATACTCCTTGGCTTGTTGTTGGCTTGGGTAACCCTGGAAATAAATACCATGGCACTAGACACAATGTTGGATTTGAAATAATTGATAGTCTTTCTCGGTCAGAAGGTATTCTGATGAATGCAATACAATCAAAAGCCTTGATTGGAATAGGTTCTATTGGAGAAGTACCAGTTTTGTTGGCGAAACCTCAAACATACATGAATTTTAGTGGGGAATCGGTTGGGCCTCTTGCTGCATATTATCGAGTGCCCTTGCGCCATATTCTAGTGGTTTATGATGAAACTAGCCTTCCAAATGGTGTTTTAAAGCTTCAACCTAAAGGTGGACATGGGCATCACAATGGATTGAAAAATGTGATTGGCCATTTGGATGGTTCTCGTGATTTTCCTCGACTTGCAATCGGAATCGGAAACCCTCCTGGAACTATGGATTTAAGAGCATTTCTTCTACAAAAGTTCAGTTCAGTGGAAAGAAAGCAGGTTGATGAGTCATTGGAGCAAGGAGTTCAAGCTGTTAAGACCTTAGTGCTCAATGGGTTTAACCATCATGTCAATAGATTCAATTTAGGGCAAAAATACAAGTACAATAAAGTTTAA

Protein sequence

>MsG0780039955.01.T01

MLHLASSPTLSLTYPSRRNFHYPRYSLKTSSSFSVHCSVQQTNNNGDTNKVEYTPWLVVGLGNPGNKYHGTRHNVGFEIIDSLSRSEGILMNAIQSKALIGIGSIGEVPVLLAKPQTYMNFSGESVGPLAAYYRVPLRHILVVYDETSLPNGVLKLQPKGGHGHHNGLKNVIGHLDGSRDFPRLAIGIGNPPGTMDLRAFLLQKFSSVERKQVDESLEQGVQAVKTLVLNGFNHHVNRFNLGQKYKYNKV*