AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041510.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041510.01.T01 MTR_7g113030 97.179 319 9 0 1 319 1 319 0.0 649
MsG0780041510.01.T01 MTR_7g113050 94.357 319 18 0 1 319 1 319 0.0 633
MsG0780041510.01.T01 MTR_7g112615 91.850 319 26 0 1 319 1 319 0.0 616
MsG0780041510.01.T01 MTR_7g112620 86.834 319 42 0 1 319 1 319 0.0 589
MsG0780041510.01.T01 MTR_7g113020 86.207 319 44 0 1 319 1 319 0.0 587
MsG0780041510.01.T01 MTR_7g112960 75.862 319 77 0 1 319 1 319 0.0 520
MsG0780041510.01.T01 MTR_7g112963 76.176 319 76 0 1 319 1 319 0.0 513
MsG0780041510.01.T01 MTR_7g112970 75.549 319 75 1 1 319 1 316 0.0 511
MsG0780041510.01.T01 MTR_4g005160 73.684 323 80 3 1 319 1 322 0.0 508
MsG0780041510.01.T01 MTR_7g113050 93.249 237 16 0 1 237 1 237 3.36e-169 469
MsG0780041510.01.T01 MTR_7g112615 91.561 237 20 0 1 237 1 237 4.86e-166 461
MsG0780041510.01.T01 MTR_7g113010 72.242 281 78 0 1 281 1 281 7.94e-153 441
MsG0780041510.01.T01 MTR_4g120240 61.059 321 121 3 1 319 37 355 7.39e-145 412
MsG0780041510.01.T01 MTR_7g108825 60.815 319 123 2 1 319 1 317 8.38e-141 400
MsG0780041510.01.T01 MTR_8g076680 48.297 323 155 4 1 319 3 317 2.46e-106 313
MsG0780041510.01.T01 MTR_7g112615 90.566 159 15 0 1 159 1 159 3.61e-106 307
MsG0780041510.01.T01 MTR_7g108825 59.494 237 94 2 1 237 1 235 5.53e-98 289
MsG0780041510.01.T01 MTR_7g112910 58.635 249 48 5 72 319 1 195 2.00e-90 268
MsG0780041510.01.T01 MTR_1g083480 78.616 159 30 2 1 156 1 158 5.94e-90 266
MsG0780041510.01.T01 MTR_8g076680 49.378 241 112 3 1 237 3 237 3.70e-81 246
MsG0780041510.01.T01 MTR_2g090240 36.760 321 189 6 1 318 1 310 1.09e-66 212
MsG0780041510.01.T01 MTR_4g089060 36.760 321 188 6 1 318 1 309 2.09e-65 208
MsG0780041510.01.T01 MTR_3g024250 86.916 107 14 0 46 152 1 107 3.49e-65 202
MsG0780041510.01.T01 MTR_2g090245 35.826 321 192 7 1 318 1 310 6.85e-63 202
MsG0780041510.01.T01 MTR_4g089040 36.137 321 190 6 1 318 1 309 6.98e-63 202
MsG0780041510.01.T01 MTR_4g089060 34.195 348 187 7 1 318 1 336 2.85e-60 196
MsG0780041510.01.T01 MTR_4g089060 39.056 233 133 3 1 231 1 226 8.67e-54 176
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041510.01.T01 AT3G05600 60.185 324 124 4 1 319 1 324 2.53e-147 417
MsG0780041510.01.T01 AT4G02340 57.188 320 132 3 1 319 1 316 6.22e-138 394
MsG0780041510.01.T01 AT2G26740 61.180 322 118 4 4 319 1 321 8.36e-130 373
MsG0780041510.01.T01 AT4G15960 52.615 325 147 3 1 319 51 374 1.41e-124 362
MsG0780041510.01.T01 AT2G26750 58.567 321 127 4 4 319 1 320 2.60e-124 359
MsG0780041510.01.T01 AT4G15955 50.613 326 123 4 5 319 6 304 1.03e-109 321
MsG0780041510.01.T01 AT3G05600 61.157 242 89 4 1 237 1 242 7.01e-108 314
MsG0780041510.01.T01 AT3G51000 48.428 318 159 5 4 319 5 319 4.12e-103 305
MsG0780041510.01.T01 AT4G15955 60.920 174 58 2 5 168 6 179 9.04e-72 220
MsG0780041510.01.T01 AT4G15955 61.212 165 54 2 5 159 6 170 1.30e-67 209

Find 97 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAAGCTTTGATTCTTTC+AGG 0.126719 7:-91862513 None:intergenic
GGCATCAACGGTCCTGATTT+TGG 0.162298 7:-91862568 None:intergenic
CCTCTTGTCTTGTTCCTTCA+TGG 0.187509 7:+91862243 MsG0780041510.01.T01:CDS
TAAACAGGGTCAATGAAATT+TGG 0.224606 7:+91864946 MsG0780041510.01.T01:three_prime_UTR
AAATACTAGATGTATCTTTC+TGG 0.253896 7:+91864800 MsG0780041510.01.T01:three_prime_UTR
TTATTACATATGTAGATTTC+AGG 0.264776 7:+91862614 MsG0780041510.01.T01:CDS
AAAATGCATATTGCTGAAAA+AGG 0.266560 7:+91862210 MsG0780041510.01.T01:CDS
TATGTATGTTGTGTATTATT+AGG 0.276657 7:-91864863 None:intergenic
AACTCTCCCTTGGGAAATAT+TGG 0.280214 7:-91863957 None:intergenic
ATATTTCCCAAGGGAGAGTT+TGG 0.305783 7:+91863960 MsG0780041510.01.T01:CDS
TGTTCTATTCCTTCCATCTC+TGG 0.320980 7:-91862162 None:intergenic
CGCCATGAATACCACAGTTC+GGG 0.324950 7:-91862270 None:intergenic
CACAGAACAGTGGAAGTAAA+TGG 0.328559 7:+91862183 MsG0780041510.01.T01:CDS
ATTTCTTGTGGCTCATGATT+GGG 0.336317 7:+91862455 MsG0780041510.01.T01:CDS
AGCTGATGGCACCATGGAAT+GGG 0.338259 7:+91864453 MsG0780041510.01.T01:CDS
TATTTCTTGTGGCTCATGAT+TGG 0.353373 7:+91862454 MsG0780041510.01.T01:CDS
GTCTCCAAATTTGAGAAAAC+AGG 0.355343 7:+91864053 MsG0780041510.01.T01:CDS
TTGCCGCAAAGTCTATTTCC+TGG 0.359991 7:+91864715 MsG0780041510.01.T01:three_prime_UTR
GATAATCACTTCTTCCAGAT+TGG 0.362380 7:-91864585 None:intergenic
CTGTTGATGATACTTTATAA+TGG 0.371034 7:-91862083 None:intergenic
CATGATTGGGGTGCCATCAT+TGG 0.372270 7:+91862468 MsG0780041510.01.T01:CDS
AAAAGACTTGCTACAACAAC+GGG 0.375220 7:-91864919 None:intergenic
GATGCCATGCATGCTGCTTA+TGG 0.379998 7:+91862585 MsG0780041510.01.T01:CDS
ACCCTCACAACTCGGAAAAC+TGG 0.389484 7:+91863930 MsG0780041510.01.T01:CDS
CCCAAGGGAGAGTTTGGAAC+TGG 0.389949 7:+91863966 MsG0780041510.01.T01:CDS
AGCCAAGAGGGTAAGGTGTC+AGG 0.390169 7:-91864005 None:intergenic
ATCACAGGAACCAGGCAAAA+TGG 0.395142 7:+91863863 MsG0780041510.01.T01:intron
GCTCCGGATCTCCGTGGTTA+TGG 0.399328 7:+91862336 MsG0780041510.01.T01:CDS
TTACTTGTATTGTAGAAATT+GGG 0.399713 7:+91864430 MsG0780041510.01.T01:intron
TCCCCGAACTGTGGTATTCA+TGG 0.400391 7:+91862268 MsG0780041510.01.T01:CDS
GAAGAAGTGATTATCCAAAA+AGG 0.403789 7:+91864593 MsG0780041510.01.T01:CDS
CTCCTGACACCTTACCCTCT+TGG 0.407073 7:+91864003 MsG0780041510.01.T01:CDS
CATAAGCTTTGATTCTTTCA+GGG 0.418162 7:-91862512 None:intergenic
GTGCCTGTGAAATTCATTAC+AGG 0.432209 7:+91864488 MsG0780041510.01.T01:CDS
CAAGGAAGATGTGCCCAATC+TGG 0.434486 7:+91864571 MsG0780041510.01.T01:CDS
TCCGTAGAAACCCCAAAATC+AGG 0.443771 7:+91862556 MsG0780041510.01.T01:CDS
ATAATCACTTCTTCCAGATT+GGG 0.447163 7:-91864584 None:intergenic
TCCAGTTCCAAACTCTCCCT+TGG 0.447351 7:-91863967 None:intergenic
CGGCTACCGTGCTGTTGCTC+CGG 0.456232 7:+91862320 MsG0780041510.01.T01:CDS
TTCTGTAAGCCAAGAGGGTA+AGG 0.457253 7:-91864012 None:intergenic
GAAAATCTATAAGTGCAATA+AGG 0.461083 7:-91862416 None:intergenic
GCGCCATGAATACCACAGTT+CGG 0.461173 7:-91862271 None:intergenic
GAGCTGATGGCACCATGGAA+TGG 0.461653 7:+91864452 MsG0780041510.01.T01:CDS
TCACCATAACCACGGAGATC+CGG 0.490155 7:-91862339 None:intergenic
CCAGTTCCAAACTCTCCCTT+GGG 0.501905 7:-91863966 None:intergenic
ACAAAGATACCAACCAATGA+TGG 0.534758 7:-91862481 None:intergenic
GAACCAGGAAATAGACTTTG+CGG 0.538287 7:-91864718 None:intergenic
AGGCAAAATGGAAGCTGAGA+TGG 0.540634 7:+91863875 MsG0780041510.01.T01:CDS
ATGGAATGGGGTGAAAATCA+AGG 0.540835 7:+91864466 MsG0780041510.01.T01:CDS
TTTCTTGTGGCTCATGATTG+GGG 0.543062 7:+91862456 MsG0780041510.01.T01:CDS
TCTCCCTTGGGAAATATTGG+AGG 0.546141 7:-91863954 None:intergenic
TTGGGGTTTCTACGGAGTAG+TGG 0.547389 7:-91862549 None:intergenic
ATTGTAGCTCTCAGCTCCCT+CGG 0.548619 7:+91862300 MsG0780041510.01.T01:CDS
ATCTCCATAAGCAGCATGCA+TGG 0.554133 7:-91862589 None:intergenic
CAAAAGACTTGCTACAACAA+CGG 0.556334 7:-91864920 None:intergenic
TCTTCTTCTGTAAGCCAAGA+GGG 0.563661 7:-91864017 None:intergenic
GAGCAACAGCACGGTAGCCG+AGG 0.563671 7:-91862317 None:intergenic
TCACCTGTAATGAATTTCAC+AGG 0.570947 7:-91864491 None:intergenic
AGCAACAGCACGGTAGCCGA+GGG 0.572130 7:-91862316 None:intergenic
ATTGGGGTGCCATCATTGGT+TGG 0.574625 7:+91862472 MsG0780041510.01.T01:CDS
ACAGTTCGGGGAAGCCATGA+AGG 0.577839 7:-91862257 None:intergenic
GAAGGAGTATATCCATGGTG+GGG 0.578871 7:+91864544 MsG0780041510.01.T01:CDS
TGAAGGAGTATATCCATGGT+GGG 0.583874 7:+91864543 MsG0780041510.01.T01:CDS
TGGTCCTCCAATATTTCCCA+AGG 0.588717 7:+91863950 MsG0780041510.01.T01:CDS
GAAGCTGAGATGGCTGAAGT+TGG 0.590883 7:+91863885 MsG0780041510.01.T01:CDS
AGCTGAGAGCTACAATCTGA+TGG 0.590990 7:-91862293 None:intergenic
AGCAGCATGCATGGCATCAA+CGG 0.592010 7:-91862580 None:intergenic
TGGTCCGCATCACAGGAACC+AGG 0.594410 7:+91863855 MsG0780041510.01.T01:intron
TCTTCAGTTAGTAGCTACAC+AGG 0.594878 7:+91862375 MsG0780041510.01.T01:CDS
AAGGAGTATATCCATGGTGG+GGG 0.600787 7:+91864545 MsG0780041510.01.T01:CDS
TTCATGGCTTCCCCGAACTG+TGG 0.605850 7:+91862259 MsG0780041510.01.T01:CDS
TGTTGATCAAGTATTTCTTG+TGG 0.608957 7:+91862443 MsG0780041510.01.T01:CDS
CAACAATCAAGAAGCAGCAG+AGG 0.610084 7:+91864628 MsG0780041510.01.T01:CDS
ACTAACTGAAGACGGAGCAT+CGG 0.615174 7:-91862364 None:intergenic
GTTATTATTAGTGACCCTTG+TGG 0.618384 7:-91864837 None:intergenic
CCATGAAGGAACAAGACAAG+AGG 0.618716 7:-91862243 None:intergenic
TTGTAGAAATTGGGAGCTGA+TGG 0.619295 7:+91864439 MsG0780041510.01.T01:intron
AACATGAAGGAGTATATCCA+TGG 0.620148 7:+91864539 MsG0780041510.01.T01:CDS
ATACTCCTTCATGTTTAGTG+AGG 0.623538 7:-91864531 None:intergenic
ACACGCAACTACTAAGAACC+AGG 0.628462 7:-91864733 None:intergenic
GCTGATGGCACCATGGAATG+GGG 0.628565 7:+91864454 MsG0780041510.01.T01:CDS
GTTTGGAACTGGATTCAACT+CGG 0.629425 7:+91863977 MsG0780041510.01.T01:CDS
ATTTGGAGACAAAATAAGCA+AGG 0.634682 7:-91864040 None:intergenic
ATGAAGGAGTATATCCATGG+TGG 0.640343 7:+91864542 MsG0780041510.01.T01:CDS
TGAAAAGTACCCTCACAACT+CGG 0.640586 7:+91863922 MsG0780041510.01.T01:CDS
ATTGGGAGCTGATGGCACCA+TGG 0.649732 7:+91864447 MsG0780041510.01.T01:CDS
GTCTTCTTCTGTAAGCCAAG+AGG 0.650739 7:-91864018 None:intergenic
GTGTAGCTACTAACTGAAGA+CGG 0.652352 7:-91862372 None:intergenic
ATACACCTCACTAAACATGA+AGG 0.662683 7:+91864526 MsG0780041510.01.T01:CDS
GGAGATCCGGAGCAACAGCA+CGG 0.668358 7:-91862326 None:intergenic
CTCAAAATAGCTCTCCACAA+GGG 0.671360 7:+91864823 MsG0780041510.01.T01:three_prime_UTR
AGGAATAGAACACAGAACAG+TGG 0.676997 7:+91862173 MsG0780041510.01.T01:CDS
GCTCAAAATAGCTCTCCACA+AGG 0.683118 7:+91864822 MsG0780041510.01.T01:three_prime_UTR
GCCATGAATACCACAGTTCG+GGG 0.692309 7:-91862269 None:intergenic
GGTCCTCCAATATTTCCCAA+GGG 0.706108 7:+91863951 MsG0780041510.01.T01:CDS
GCTGTTGCTCCGGATCTCCG+TGG 0.713696 7:+91862330 MsG0780041510.01.T01:CDS
CATCGGTGTCACCATAACCA+CGG 0.714613 7:-91862347 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATGTGATTTTATTTTAT+AGG - Chr7:91862790-91862809 None:intergenic 10.0%
!!! AAATGTGATTTTATTTTATA+GGG - Chr7:91862789-91862808 None:intergenic 10.0%
!! AATACTTAATAACTAAATTC+AGG + Chr7:91863036-91863055 MsG0780041510.01.T01:intron 15.0%
!! AGTAACAAAAAAAAAAACAA+TGG - Chr7:91864892-91864911 None:intergenic 15.0%
!! ATACTTAATAACTAAATTCA+GGG + Chr7:91863037-91863056 MsG0780041510.01.T01:intron 15.0%
!! ATTGTTTAATATAATTAAGG+AGG + Chr7:91863166-91863185 MsG0780041510.01.T01:intron 15.0%
!! CAAAATTCTAAATATTTAGA+TGG - Chr7:91862758-91862777 None:intergenic 15.0%
!! GAGATTGTTTAATATAATTA+AGG + Chr7:91863163-91863182 MsG0780041510.01.T01:intron 15.0%
!! GTAACAAAAAAAAAAACAAT+GGG - Chr7:91864891-91864910 None:intergenic 15.0%
!!! ATGTTGATGAAAAATTTTAT+AGG - Chr7:91862819-91862838 None:intergenic 15.0%
!!! CTGGTTTTTTTTTTTTTTTT+TGG - Chr7:91862146-91862165 None:intergenic 15.0%
!!! TGTTGATGAAAAATTTTATA+GGG - Chr7:91862818-91862837 None:intergenic 15.0%
!! AAAAAAAAAAAAACCAGAGA+TGG + Chr7:91862149-91862168 MsG0780041510.01.T01:exon 20.0%
!! AAACTTAATTATATAGATGC+AGG + Chr7:91863006-91863025 MsG0780041510.01.T01:intron 20.0%
!! ATTACTTGTATTGTAGAAAT+TGG + Chr7:91864429-91864448 MsG0780041510.01.T01:intron 20.0%
!! ATTGATTATTGAATACGTTA+GGG + Chr7:91863590-91863609 MsG0780041510.01.T01:intron 20.0%
!! TATGTATGTTGTGTATTATT+AGG - Chr7:91864866-91864885 None:intergenic 20.0%
!! TCATGAGTCATAAAATATTA+GGG - Chr7:91862707-91862726 None:intergenic 20.0%
!! TCTGTTTCAAAACATTATAT+TGG - Chr7:91863767-91863786 None:intergenic 20.0%
!! TTACTTGTATTGTAGAAATT+GGG + Chr7:91864430-91864449 MsG0780041510.01.T01:intron 20.0%
!! TTATTACATATGTAGATTTC+AGG + Chr7:91862614-91862633 MsG0780041510.01.T01:CDS 20.0%
!! TTCATGAGTCATAAAATATT+AGG - Chr7:91862708-91862727 None:intergenic 20.0%
!!! AAAATATCCATCAACATTTT+TGG + Chr7:91862886-91862905 MsG0780041510.01.T01:intron 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG + Chr7:91862946-91862965 MsG0780041510.01.T01:intron 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG + Chr7:91862947-91862966 MsG0780041510.01.T01:intron 20.0%
!!! ACCAATAACAGTTTTAAAAA+TGG - Chr7:91864305-91864324 None:intergenic 20.0%
!!! TATATGTTGACAATTCTTTT+TGG + Chr7:91864160-91864179 MsG0780041510.01.T01:intron 20.0%
!!! TATTGATTATTGAATACGTT+AGG + Chr7:91863589-91863608 MsG0780041510.01.T01:intron 20.0%
!!! TCCATTTTTAAAACTGTTAT+TGG + Chr7:91864301-91864320 MsG0780041510.01.T01:intron 20.0%
!!! TGTTGATGGAAATTTTTTAT+AGG - Chr7:91862850-91862869 None:intergenic 20.0%
!!! TTAAAAAAAGCACTTGATTA+AGG + Chr7:91863309-91863328 MsG0780041510.01.T01:intron 20.0%
!!! TTAATCAAGTGCTTTTTTTA+AGG - Chr7:91863310-91863329 None:intergenic 20.0%
!!! TTTGTTTATCTAAAATGAAG+TGG + Chr7:91863791-91863810 MsG0780041510.01.T01:intron 20.0%
! AAAATGCATATTGCTGAAAA+AGG + Chr7:91862210-91862229 MsG0780041510.01.T01:CDS 25.0%
! AAATACTAGATGTATCTTTC+TGG + Chr7:91864800-91864819 MsG0780041510.01.T01:three_prime_UTR 25.0%
! AATGCATCTTTCATTAGAAT+TGG - Chr7:91864409-91864428 None:intergenic 25.0%
! ACAAAACTGTGAATATTTGT+AGG + Chr7:91862977-91862996 MsG0780041510.01.T01:intron 25.0%
! ACAAAGACTAAAAATGTTGA+TGG - Chr7:91862864-91862883 None:intergenic 25.0%
! AGAATTGTATGACATCATAA+TGG + Chr7:91863647-91863666 MsG0780041510.01.T01:intron 25.0%
! ATGATATGTAGCTAAAAGAA+AGG - Chr7:91863700-91863719 None:intergenic 25.0%
! ATGCATCTTTCATTAGAATT+GGG - Chr7:91864408-91864427 None:intergenic 25.0%
! ATTTATTTGAGAGGATTTAC+GGG + Chr7:91863136-91863155 MsG0780041510.01.T01:intron 25.0%
! CAAAACTGTGAATATTTGTA+GGG + Chr7:91862978-91862997 MsG0780041510.01.T01:intron 25.0%
! GAAAATCTATAAGTGCAATA+AGG - Chr7:91862419-91862438 None:intergenic 25.0%
! GAATTAACTGATCAACTATA+AGG - Chr7:91863507-91863526 None:intergenic 25.0%
! GAATTGTCAACATATATTTG+TGG - Chr7:91864156-91864175 None:intergenic 25.0%
! GATTGCTTAAAGTAAATTAG+GGG - Chr7:91862685-91862704 None:intergenic 25.0%
! GATTTATTTGAGAGGATTTA+CGG + Chr7:91863135-91863154 MsG0780041510.01.T01:intron 25.0%
! GGATTGCTTAAAGTAAATTA+GGG - Chr7:91862686-91862705 None:intergenic 25.0%
! TACAGGGTTAATTAAGTAAA+TGG + Chr7:91862731-91862750 MsG0780041510.01.T01:intron 25.0%
! TATGACTCATGAAATATACA+GGG + Chr7:91862715-91862734 MsG0780041510.01.T01:intron 25.0%
! TCAAATAAATCTATCCAAAC+AGG - Chr7:91863126-91863145 None:intergenic 25.0%
! TGATTGAATATAACATGTGT+CGG - Chr7:91864279-91864298 None:intergenic 25.0%
! TTATGACTCATGAAATATAC+AGG + Chr7:91862714-91862733 MsG0780041510.01.T01:intron 25.0%
! TTTGGATAGATTTATTTGAG+AGG + Chr7:91863127-91863146 MsG0780041510.01.T01:intron 25.0%
!! ACATTTTCCTTAAGCATTTT+AGG - Chr7:91862914-91862933 None:intergenic 25.0%
!! ATTGCACTTATAGATTTTCT+GGG + Chr7:91862420-91862439 MsG0780041510.01.T01:CDS 25.0%
!! CAAGTCTTTTGAATTAAACA+GGG + Chr7:91864932-91864951 MsG0780041510.01.T01:three_prime_UTR 25.0%
!! CATTTTCCTTAAGCATTTTA+GGG - Chr7:91862913-91862932 None:intergenic 25.0%
!! CTGAATAACATAATTGCTTT+TGG + Chr7:91863835-91863854 MsG0780041510.01.T01:intron 25.0%
!! TATTGCACTTATAGATTTTC+TGG + Chr7:91862419-91862438 MsG0780041510.01.T01:CDS 25.0%
!!! CTGTTGATGATACTTTATAA+TGG - Chr7:91862086-91862105 None:intergenic 25.0%
!!! TCTTATGATTTTAGTTTGAG+TGG + Chr7:91863065-91863084 MsG0780041510.01.T01:intron 25.0%
AAAAAAAAACCAGAGATGGA+AGG + Chr7:91862153-91862172 MsG0780041510.01.T01:exon 30.0%
AATCAAGTGTTAAATCCACT+TGG - Chr7:91863444-91863463 None:intergenic 30.0%
AGTAGAGTCTAAATCAAAAG+AGG + Chr7:91863478-91863497 MsG0780041510.01.T01:intron 30.0%
ATAATCACTTCTTCCAGATT+GGG - Chr7:91864587-91864606 None:intergenic 30.0%
ATCAAGTGTTAAATCCACTT+GGG - Chr7:91863443-91863462 None:intergenic 30.0%
ATTGCTGAAAAAGGAAAAGA+AGG + Chr7:91862219-91862238 MsG0780041510.01.T01:CDS 30.0%
ATTTGGAGACAAAATAAGCA+AGG - Chr7:91864043-91864062 None:intergenic 30.0%
CAACATGACAATAATCTATG+CGG + Chr7:91864196-91864215 MsG0780041510.01.T01:intron 30.0%
GAAGAAGTGATTATCCAAAA+AGG + Chr7:91864593-91864612 MsG0780041510.01.T01:CDS 30.0%
GGGATTGCTTAAAGTAAATT+AGG - Chr7:91862687-91862706 None:intergenic 30.0%
TAAACAGGGTCAATGAAATT+TGG + Chr7:91864946-91864965 MsG0780041510.01.T01:three_prime_UTR 30.0%
TGTTGATCAAGTATTTCTTG+TGG + Chr7:91862443-91862462 MsG0780041510.01.T01:CDS 30.0%
! ACATAAGCTTTGATTCTTTC+AGG - Chr7:91862516-91862535 None:intergenic 30.0%
! ACATGTTGTGCATTTTGTTA+GGG + Chr7:91863561-91863580 MsG0780041510.01.T01:intron 30.0%
! CATAAGCTTTGATTCTTTCA+GGG - Chr7:91862515-91862534 None:intergenic 30.0%
! GCAAGTCTTTTGAATTAAAC+AGG + Chr7:91864931-91864950 MsG0780041510.01.T01:three_prime_UTR 30.0%
! TACACAGGTTTTCATATAGT+AGG + Chr7:91862390-91862409 MsG0780041510.01.T01:CDS 30.0%
ACAAAGATACCAACCAATGA+TGG - Chr7:91862484-91862503 None:intergenic 35.0%
ACAACGCTAAACACAAACAT+TGG - Chr7:91864349-91864368 None:intergenic 35.0%
AGTGATTATCCAAAAAGGAG+TGG + Chr7:91864598-91864617 MsG0780041510.01.T01:CDS 35.0%
ATACACCTCACTAAACATGA+AGG + Chr7:91864526-91864545 MsG0780041510.01.T01:CDS 35.0%
ATACTCCTTCATGTTTAGTG+AGG - Chr7:91864534-91864553 None:intergenic 35.0%
ATGCTTAAGGAAAATGTCAC+AGG + Chr7:91862917-91862936 MsG0780041510.01.T01:intron 35.0%
ATTTCTTGTGGCTCATGATT+GGG + Chr7:91862455-91862474 MsG0780041510.01.T01:CDS 35.0%
CAGAGACAAAAGTAGAAAAG+TGG - Chr7:91862659-91862678 None:intergenic 35.0%
GATAATCACTTCTTCCAGAT+TGG - Chr7:91864588-91864607 None:intergenic 35.0%
GTCTCCAAATTTGAGAAAAC+AGG + Chr7:91864053-91864072 MsG0780041510.01.T01:CDS 35.0%
GTTATTATTAGTGACCCTTG+TGG - Chr7:91864840-91864859 None:intergenic 35.0%
TATCAACACGTATCAAACAC+CGG - Chr7:91864249-91864268 None:intergenic 35.0%
TATTTCTTGTGGCTCATGAT+TGG + Chr7:91862454-91862473 MsG0780041510.01.T01:CDS 35.0%
TCACCTGTAATGAATTTCAC+AGG - Chr7:91864494-91864513 None:intergenic 35.0%
TCTGAGTAGGGTAATACTTT+AGG - Chr7:91863724-91863743 None:intergenic 35.0%
TGCTTAAGGAAAATGTCACA+GGG + Chr7:91862918-91862937 MsG0780041510.01.T01:intron 35.0%
TTAGGGACCAAAAATGTTGA+TGG - Chr7:91862896-91862915 None:intergenic 35.0%
TTTGGTCCCTAAAATGCTTA+AGG + Chr7:91862904-91862923 MsG0780041510.01.T01:intron 35.0%
! AACATGAAGGAGTATATCCA+TGG + Chr7:91864539-91864558 MsG0780041510.01.T01:CDS 35.0%
! AATATAACATGTGTCGGTGT+CGG - Chr7:91864273-91864292 None:intergenic 35.0%
! GAAGCCTGTTTTCTCAAATT+TGG - Chr7:91864060-91864079 None:intergenic 35.0%
! GACATGTTGTGCATTTTGTT+AGG + Chr7:91863560-91863579 MsG0780041510.01.T01:intron 35.0%
! TATTTTCCCTGTGCCAATTT+CGG - Chr7:91863365-91863384 None:intergenic 35.0%
!! AAAAGACTTGCTACAACAAC+GGG - Chr7:91864922-91864941 None:intergenic 35.0%
!! AGGGTGAAGTTCTCTTATTT+TGG + Chr7:91863609-91863628 MsG0780041510.01.T01:intron 35.0%
!! CAAAAGACTTGCTACAACAA+CGG - Chr7:91864923-91864942 None:intergenic 35.0%
!!! GGGTGAAGTTCTCTTATTTT+GGG + Chr7:91863610-91863629 MsG0780041510.01.T01:intron 35.0%
AACTCTCCCTTGGGAAATAT+TGG - Chr7:91863960-91863979 None:intergenic 40.0%
AGGAATAGAACACAGAACAG+TGG + Chr7:91862173-91862192 MsG0780041510.01.T01:CDS 40.0%
AGTGTTAAATCCACTTGGGA+TGG - Chr7:91863439-91863458 None:intergenic 40.0%
AGTTTGAGTGGTGTTTGATG+TGG + Chr7:91863077-91863096 MsG0780041510.01.T01:intron 40.0%
ATATTTCCCAAGGGAGAGTT+TGG + Chr7:91863960-91863979 MsG0780041510.01.T01:CDS 40.0%
ATCAACACGTATCAAACACC+GGG - Chr7:91864248-91864267 None:intergenic 40.0%
ATGATACTGATACGCCTGTT+TGG + Chr7:91863109-91863128 MsG0780041510.01.T01:intron 40.0%
ATGGAATGGGGTGAAAATCA+AGG + Chr7:91864466-91864485 MsG0780041510.01.T01:CDS 40.0%
CACAGAACAGTGGAAGTAAA+TGG + Chr7:91862183-91862202 MsG0780041510.01.T01:CDS 40.0%
CTCAAAATAGCTCTCCACAA+GGG + Chr7:91864823-91864842 MsG0780041510.01.T01:three_prime_UTR 40.0%
GAACCAGGAAATAGACTTTG+CGG - Chr7:91864721-91864740 None:intergenic 40.0%
GAGACGATTCAATCTGAGTA+GGG - Chr7:91863736-91863755 None:intergenic 40.0%
GTGCCTGTGAAATTCATTAC+AGG + Chr7:91864488-91864507 MsG0780041510.01.T01:CDS 40.0%
GTGTAGCTACTAACTGAAGA+CGG - Chr7:91862375-91862394 None:intergenic 40.0%
GTTTGAGTGGTGTTTGATGT+GGG + Chr7:91863078-91863097 MsG0780041510.01.T01:intron 40.0%
TCTTCAGTTAGTAGCTACAC+AGG + Chr7:91862375-91862394 MsG0780041510.01.T01:CDS 40.0%
TCTTCTTCTGTAAGCCAAGA+GGG - Chr7:91864020-91864039 None:intergenic 40.0%
TGTTCTATTCCTTCCATCTC+TGG - Chr7:91862165-91862184 None:intergenic 40.0%
TTGTAGAAATTGGGAGCTGA+TGG + Chr7:91864439-91864458 MsG0780041510.01.T01:intron 40.0%
TTTCTTGTGGCTCATGATTG+GGG + Chr7:91862456-91862475 MsG0780041510.01.T01:CDS 40.0%
! AGACTGGAGTATCTCTCTTA+AGG - Chr7:91863398-91863417 None:intergenic 40.0%
! ATGAAGGAGTATATCCATGG+TGG + Chr7:91864542-91864561 MsG0780041510.01.T01:CDS 40.0%
! GTTTGGAACTGGATTCAACT+CGG + Chr7:91863977-91863996 MsG0780041510.01.T01:CDS 40.0%
! TGAAGGAGTATATCCATGGT+GGG + Chr7:91864543-91864562 MsG0780041510.01.T01:CDS 40.0%
! TTGATTTTCACCCCATTCCA+TGG - Chr7:91864467-91864486 None:intergenic 40.0%
!! TGAAAAGTACCCTCACAACT+CGG + Chr7:91863922-91863941 MsG0780041510.01.T01:CDS 40.0%
!!! TCCTGATTTTGGGGTTTCTA+CGG - Chr7:91862560-91862579 None:intergenic 40.0%
AAGAGAGATACTCCAGTCTC+AGG + Chr7:91863399-91863418 MsG0780041510.01.T01:intron 45.0%
ACACGCAACTACTAAGAACC+AGG - Chr7:91864736-91864755 None:intergenic 45.0%
ACTAACTGAAGACGGAGCAT+CGG - Chr7:91862367-91862386 None:intergenic 45.0%
AGCTGAGAGCTACAATCTGA+TGG - Chr7:91862296-91862315 None:intergenic 45.0%
AGGCAAAATGGAAGCTGAGA+TGG + Chr7:91863875-91863894 MsG0780041510.01.T01:CDS 45.0%
ATCACAGGAACCAGGCAAAA+TGG + Chr7:91863863-91863882 MsG0780041510.01.T01:intron 45.0%
ATCTCCATAAGCAGCATGCA+TGG - Chr7:91862592-91862611 None:intergenic 45.0%
CAACAATCAAGAAGCAGCAG+AGG + Chr7:91864628-91864647 MsG0780041510.01.T01:CDS 45.0%
CCATGAAGGAACAAGACAAG+AGG - Chr7:91862246-91862265 None:intergenic 45.0%
CGAGACGATTCAATCTGAGT+AGG - Chr7:91863737-91863756 None:intergenic 45.0%
GCTCAAAATAGCTCTCCACA+AGG + Chr7:91864822-91864841 MsG0780041510.01.T01:three_prime_UTR 45.0%
GGTCCTCCAATATTTCCCAA+GGG + Chr7:91863951-91863970 MsG0780041510.01.T01:CDS 45.0%
GTCTTCTTCTGTAAGCCAAG+AGG - Chr7:91864021-91864040 None:intergenic 45.0%
TCCGTAGAAACCCCAAAATC+AGG + Chr7:91862556-91862575 MsG0780041510.01.T01:CDS 45.0%
TCGATCTATCCCACCGAAAT+TGG + Chr7:91863349-91863368 MsG0780041510.01.T01:intron 45.0%
TCTCCCTTGGGAAATATTGG+AGG - Chr7:91863957-91863976 None:intergenic 45.0%
TGGTCCTCCAATATTTCCCA+AGG + Chr7:91863950-91863969 MsG0780041510.01.T01:CDS 45.0%
TTCTGTAAGCCAAGAGGGTA+AGG - Chr7:91864015-91864034 None:intergenic 45.0%
TTGCCGCAAAGTCTATTTCC+TGG + Chr7:91864715-91864734 MsG0780041510.01.T01:three_prime_UTR 45.0%
TTTCAGTTTGAAGACGTGCC+CGG + Chr7:91864227-91864246 MsG0780041510.01.T01:intron 45.0%
! AAGGAGTATATCCATGGTGG+GGG + Chr7:91864545-91864564 MsG0780041510.01.T01:CDS 45.0%
! ACCAGTTTTCCGAGTTGTGA+GGG - Chr7:91863934-91863953 None:intergenic 45.0%
! ATCTCAGCTTCCATTTTGCC+TGG - Chr7:91863876-91863895 None:intergenic 45.0%
! CATCAACGGTCCTGATTTTG+GGG - Chr7:91862569-91862588 None:intergenic 45.0%
! CCTCTTGTCTTGTTCCTTCA+TGG + Chr7:91862243-91862262 MsG0780041510.01.T01:CDS 45.0%
! GAAGGAGTATATCCATGGTG+GGG + Chr7:91864544-91864563 MsG0780041510.01.T01:CDS 45.0%
! GCATCAACGGTCCTGATTTT+GGG - Chr7:91862570-91862589 None:intergenic 45.0%
ACCCTCACAACTCGGAAAAC+TGG + Chr7:91863930-91863949 MsG0780041510.01.T01:CDS 50.0%
AGCAGCATGCATGGCATCAA+CGG - Chr7:91862583-91862602 None:intergenic 50.0%
AGCTGATGGCACCATGGAAT+GGG + Chr7:91864453-91864472 MsG0780041510.01.T01:CDS 50.0%
ATCCCACCGAAATTGGCACA+GGG + Chr7:91863356-91863375 MsG0780041510.01.T01:intron 50.0%
ATTGTAGCTCTCAGCTCCCT+CGG + Chr7:91862300-91862319 MsG0780041510.01.T01:CDS 50.0%
CAAGGAAGATGTGCCCAATC+TGG + Chr7:91864571-91864590 MsG0780041510.01.T01:CDS 50.0%
CCAGTTCCAAACTCTCCCTT+GGG - Chr7:91863969-91863988 None:intergenic 50.0%
CGCCATGAATACCACAGTTC+GGG - Chr7:91862273-91862292 None:intergenic 50.0%
GAAGCTGAGATGGCTGAAGT+TGG + Chr7:91863885-91863904 MsG0780041510.01.T01:CDS 50.0%
GCCATGAATACCACAGTTCG+GGG - Chr7:91862272-91862291 None:intergenic 50.0%
GCGCCATGAATACCACAGTT+CGG - Chr7:91862274-91862293 None:intergenic 50.0%
TAAATCCACTTGGGATGGCC+TGG - Chr7:91863434-91863453 None:intergenic 50.0%
TATCCCACCGAAATTGGCAC+AGG + Chr7:91863355-91863374 MsG0780041510.01.T01:intron 50.0%
TCACCATAACCACGGAGATC+CGG - Chr7:91862342-91862361 None:intergenic 50.0%
TCCAGTTCCAAACTCTCCCT+TGG - Chr7:91863970-91863989 None:intergenic 50.0%
TCCCCGAACTGTGGTATTCA+TGG + Chr7:91862268-91862287 MsG0780041510.01.T01:CDS 50.0%
TTCCCTGTGCCAATTTCGGT+GGG - Chr7:91863361-91863380 None:intergenic 50.0%
TTGGGGTTTCTACGGAGTAG+TGG - Chr7:91862552-91862571 None:intergenic 50.0%
TTTCCCTGTGCCAATTTCGG+TGG - Chr7:91863362-91863381 None:intergenic 50.0%
TTTGCCTGGTTCCTGTGATG+CGG - Chr7:91863862-91863881 None:intergenic 50.0%
! ATTGGGGTGCCATCATTGGT+TGG + Chr7:91862472-91862491 MsG0780041510.01.T01:CDS 50.0%
! CATGATTGGGGTGCCATCAT+TGG + Chr7:91862468-91862487 MsG0780041510.01.T01:CDS 50.0%
! GACCAGTTTTCCGAGTTGTG+AGG - Chr7:91863935-91863954 None:intergenic 50.0%
! GATGCCATGCATGCTGCTTA+TGG + Chr7:91862585-91862604 MsG0780041510.01.T01:CDS 50.0%
! GGCATCAACGGTCCTGATTT+TGG - Chr7:91862571-91862590 None:intergenic 50.0%
! TATCCATGGTGGGGGATTCA+AGG + Chr7:91864553-91864572 MsG0780041510.01.T01:CDS 50.0%
! TGAAGTGCGCCACTCCTTTT+TGG - Chr7:91864610-91864629 None:intergenic 50.0%
!! CATCGGTGTCACCATAACCA+CGG - Chr7:91862350-91862369 None:intergenic 50.0%
!! TTGCTTTTGGTCCGCATCAC+AGG + Chr7:91863848-91863867 MsG0780041510.01.T01:intron 50.0%
ACAGTTCGGGGAAGCCATGA+AGG - Chr7:91862260-91862279 None:intergenic 55.0%
ATTGGGAGCTGATGGCACCA+TGG + Chr7:91864447-91864466 MsG0780041510.01.T01:CDS 55.0%
CTCCTGACACCTTACCCTCT+TGG + Chr7:91864003-91864022 MsG0780041510.01.T01:CDS 55.0%
CTTCCTTGAATCCCCCACCA+TGG - Chr7:91864559-91864578 None:intergenic 55.0%
GAGCTGATGGCACCATGGAA+TGG + Chr7:91864452-91864471 MsG0780041510.01.T01:CDS 55.0%
GCTGATGGCACCATGGAATG+GGG + Chr7:91864454-91864473 MsG0780041510.01.T01:CDS 55.0%
TTCATGGCTTCCCCGAACTG+TGG + Chr7:91862259-91862278 MsG0780041510.01.T01:CDS 55.0%
! AGCCAAGAGGGTAAGGTGTC+AGG - Chr7:91864008-91864027 None:intergenic 55.0%
! CCCAAGGGAGAGTTTGGAAC+TGG + Chr7:91863966-91863985 MsG0780041510.01.T01:CDS 55.0%
AGCAACAGCACGGTAGCCGA+GGG - Chr7:91862319-91862338 None:intergenic 60.0%
AGTCTCAGGACACCACCACC+AGG + Chr7:91863413-91863432 MsG0780041510.01.T01:intron 60.0%
ATCCACTTGGGATGGCCTGG+TGG - Chr7:91863431-91863450 None:intergenic 60.0%
GCTCCGGATCTCCGTGGTTA+TGG + Chr7:91862336-91862355 MsG0780041510.01.T01:CDS 60.0%
GGAGATCCGGAGCAACAGCA+CGG - Chr7:91862329-91862348 None:intergenic 60.0%
TGGTCCGCATCACAGGAACC+AGG + Chr7:91863855-91863874 MsG0780041510.01.T01:intron 60.0%
!! TGGTGGTGGTGTCCTGAGAC+TGG - Chr7:91863414-91863433 None:intergenic 60.0%
CACCACCAGGCCATCCCAAG+TGG + Chr7:91863426-91863445 MsG0780041510.01.T01:intron 65.0%
CACTTGGGATGGCCTGGTGG+TGG - Chr7:91863428-91863447 None:intergenic 65.0%
GAGCAACAGCACGGTAGCCG+AGG - Chr7:91862320-91862339 None:intergenic 65.0%
GCTGTTGCTCCGGATCTCCG+TGG + Chr7:91862330-91862349 MsG0780041510.01.T01:CDS 65.0%
! CGGCTACCGTGCTGTTGCTC+CGG + Chr7:91862320-91862339 MsG0780041510.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 91862080 91864973 91862080 ID=MsG0780041510.01;Name=MsG0780041510.01
Chr7 mRNA 91862080 91864973 91862080 ID=MsG0780041510.01.T01;Parent=MsG0780041510.01;Name=MsG0780041510.01.T01;_AED=0.49;_eAED=0.49;_QI=88|1|1|1|1|1|3|282|319
Chr7 exon 91862080 91862635 91862080 ID=MsG0780041510.01.T01:exon:18725;Parent=MsG0780041510.01.T01
Chr7 exon 91863870 91864114 91863870 ID=MsG0780041510.01.T01:exon:18726;Parent=MsG0780041510.01.T01
Chr7 exon 91864445 91864973 91864445 ID=MsG0780041510.01.T01:exon:18727;Parent=MsG0780041510.01.T01
Chr7 five_prime_UTR 91862080 91862167 91862080 ID=MsG0780041510.01.T01:five_prime_utr;Parent=MsG0780041510.01.T01
Chr7 CDS 91862168 91862635 91862168 ID=MsG0780041510.01.T01:cds;Parent=MsG0780041510.01.T01
Chr7 CDS 91863870 91864114 91863870 ID=MsG0780041510.01.T01:cds;Parent=MsG0780041510.01.T01
Chr7 CDS 91864445 91864691 91864445 ID=MsG0780041510.01.T01:cds;Parent=MsG0780041510.01.T01
Chr7 three_prime_UTR 91864692 91864973 91864692 ID=MsG0780041510.01.T01:three_prime_utr;Parent=MsG0780041510.01.T01
Gene Sequence

>MsG0780041510.01.T01

ATGGAAGGAATAGAACACAGAACAGTGGAAGTAAATGGAATCAAAATGCATATTGCTGAAAAAGGAAAAGAAGGTCCTCTTGTCTTGTTCCTTCATGGCTTCCCCGAACTGTGGTATTCATGGCGCCATCAGATTGTAGCTCTCAGCTCCCTCGGCTACCGTGCTGTTGCTCCGGATCTCCGTGGTTATGGTGACACCGATGCTCCGTCTTCAGTTAGTAGCTACACAGGTTTTCATATAGTAGGTGACCTTATTGCACTTATAGATTTTCTGGGTGTTGATCAAGTATTTCTTGTGGCTCATGATTGGGGTGCCATCATTGGTTGGTATCTTTGTATGTTTCGCCCTGAAAGAATCAAAGCTTATGTTTGTCTCAGTGTTCCACTACTCCGTAGAAACCCCAAAATCAGGACCGTTGATGCCATGCATGCTGCTTATGGAGATGATTATTACATATGTAGATTTCAGGAACCAGGCAAAATGGAAGCTGAGATGGCTGAAGTTGGCACTGCATATGTGATGAAAAGTACCCTCACAACTCGGAAAACTGGTCCTCCAATATTTCCCAAGGGAGAGTTTGGAACTGGATTCAACTCGGATACTCCTGACACCTTACCCTCTTGGCTTACAGAAGAAGACCTTGCTTATTTTGTCTCCAAATTTGAGAAAACAGGCTTCACTGCAGCATTGAACTACTATAGAAACTTGAACTCAAATTGGGAGCTGATGGCACCATGGAATGGGGTGAAAATCAAGGTGCCTGTGAAATTCATTACAGGTGATTTAGACAGTGTATACACCTCACTAAACATGAAGGAGTATATCCATGGTGGGGGATTCAAGGAAGATGTGCCCAATCTGGAAGAAGTGATTATCCAAAAAGGAGTGGCGCACTTCAACAATCAAGAAGCAGCAGAGGAAATAAGTAATCACATTTATGAATTCATCAAAAAGTTCTGA
Protein sequence

>MsG0780041510.01.T01

MEGIEHRTVEVNGIKMHIAEKGKEGPLVLFLHGFPELWYSWRHQIVALSSLGYRAVAPDLRGYGDTDAPSSVSSYTGFHIVGDLIALIDFLGVDQVFLVAHDWGAIIGWYLCMFRPERIKAYVCLSVPLLRRNPKIRTVDAMHAAYGDDYYICRFQEPGKMEAEMAEVGTAYVMKSTLTTRKTGPPIFPKGEFGTGFNSDTPDTLPSWLTEEDLAYFVSKFEKTGFTAALNYYRNLNSNWELMAPWNGVKIKVPVKFITGDLDSVYTSLNMKEYIHGGGFKEDVPNLEEVIIQKGVAHFNNQEAAEEISNHIYEFIKKF*