AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026038.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026038.01.T02 MTR_5g038260 91.864 381 30 1 1 380 3 383 0.0 733
MsG0580026038.01.T02 MTR_5g038230 83.947 380 36 2 1 380 1 355 0.0 656
MsG0580026038.01.T02 MTR_1g064570 49.132 403 179 8 1 380 1 400 3.59e-128 374
MsG0580026038.01.T02 MTR_1g108740 45.170 383 163 11 2 378 3 344 1.16e-97 294
MsG0580026038.01.T02 MTR_5g082770 50.654 306 131 10 1 303 1 289 2.15e-86 264
MsG0580026038.01.T02 MTR_7g077620 41.750 400 172 16 4 377 5 369 1.08e-76 242
MsG0580026038.01.T02 MTR_7g077660 41.058 397 181 17 4 380 5 368 1.74e-75 238
MsG0580026038.01.T02 MTR_7g077650 39.259 405 181 18 4 380 5 372 2.32e-71 228
MsG0580026038.01.T02 MTR_5g082780 44.882 254 115 9 103 351 1 234 7.45e-55 181
MsG0580026038.01.T02 MTR_1g016150 44.974 189 79 7 2 177 3 179 1.27e-44 154
MsG0580026038.01.T02 MTR_1g016150 44.792 96 35 2 232 316 148 236 2.30e-13 69.7
MsG0580026038.01.T02 MTR_7g076110 37.658 316 162 13 77 380 21 313 3.68e-44 155
MsG0580026038.01.T02 MTR_7g076100 40.873 252 119 11 139 380 69 300 1.96e-38 140
MsG0580026038.01.T02 MTR_7g076100 60.000 50 19 1 4 53 6 54 1.88e-11 64.7
MsG0580026038.01.T02 MTR_1g108750 45.000 160 49 5 1 157 1 124 1.62e-26 102
MsG0580026038.01.T02 MTR_6g023955 48.673 113 50 2 112 217 40 151 9.60e-25 100
MsG0580026038.01.T02 MTR_6g023955 55.738 61 27 0 319 379 149 209 1.50e-18 83.6
MsG0580026038.01.T02 MTR_3g114990 26.442 416 237 16 1 375 20 407 1.37e-21 95.9
MsG0580026038.01.T02 MTR_3g114970 25.320 391 237 15 1 375 1 352 5.90e-19 87.4
MsG0580026038.01.T01 MTR_5g038260 89.646 367 27 2 1 356 17 383 0.0 680
MsG0580026038.01.T01 MTR_5g038230 80.874 366 35 3 1 356 15 355 0.0 598
MsG0580026038.01.T01 MTR_1g064570 48.072 389 166 7 1 356 15 400 5.67e-121 355
MsG0580026038.01.T01 MTR_1g108740 45.278 360 160 10 1 354 16 344 3.55e-92 279
MsG0580026038.01.T01 MTR_5g082770 49.310 290 121 10 1 279 15 289 1.14e-77 240
MsG0580026038.01.T01 MTR_7g077620 42.480 379 167 15 1 353 16 369 9.15e-75 236
MsG0580026038.01.T01 MTR_7g077660 41.270 378 175 17 1 356 16 368 1.46e-70 225
MsG0580026038.01.T01 MTR_7g077650 39.583 384 177 17 1 356 16 372 7.56e-69 220
MsG0580026038.01.T01 MTR_5g082780 44.622 251 110 8 89 327 1 234 2.47e-54 179
MsG0580026038.01.T01 MTR_7g076110 38.585 311 156 14 63 356 21 313 1.52e-45 158
MsG0580026038.01.T01 MTR_1g016150 46.386 166 74 6 1 153 16 179 1.27e-40 143
MsG0580026038.01.T01 MTR_1g016150 44.792 96 35 2 208 292 148 236 1.84e-13 69.7
MsG0580026038.01.T01 MTR_7g076100 41.200 250 117 11 117 356 71 300 2.90e-38 139
MsG0580026038.01.T01 MTR_1g108750 46.324 136 44 4 1 133 15 124 2.32e-22 91.3
MsG0580026038.01.T01 MTR_6g023955 57.500 80 33 1 114 193 73 151 7.79e-22 92.4
MsG0580026038.01.T01 MTR_6g023955 55.738 61 27 0 295 355 149 209 1.03e-18 84.0
MsG0580026038.01.T01 MTR_3g114990 27.874 348 182 16 55 351 78 407 5.63e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 78 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTATATTGCTCCTAAAT+TGG 0.217987 5:-29549728 None:intergenic
CACTTGGGAGAATCCATTTA+AGG 0.221530 5:+29549911 MsG0580026038.01.T01:CDS
TAATCATTTGGACTTGTTAT+AGG 0.239358 5:-29550026 None:intergenic
TGGTGAGAAGGTTTATAAAT+AGG 0.247820 5:+29550342 MsG0580026038.01.T01:CDS
ATACAAGACACTGACCATTT+TGG 0.281472 5:+29550122 MsG0580026038.01.T01:CDS
TAAAAGCAGGACAAGAGTTT+TGG 0.281524 5:+29550093 MsG0580026038.01.T01:CDS
CTTCTTTGTAACAAAACATT+TGG 0.292647 5:-29550257 None:intergenic
ATAGGAGCAACATCCTTAAA+TGG 0.322131 5:-29549924 None:intergenic
GCCACCCATCGATAATTATA+TGG 0.327281 5:+29549953 MsG0580026038.01.T01:CDS
TTGTCGAGACTTGAGAGTTT+AGG 0.327611 5:+29550446 MsG0580026038.01.T01:CDS
AATGGATACACTCTATTTGC+AGG 0.334507 5:-29549807 None:intergenic
ATCAACACGATCACCAATTT+AGG 0.336169 5:+29549715 MsG0580026038.01.T01:CDS
TTGAACCAATTGATCACATT+TGG 0.344806 5:+29549646 MsG0580026038.01.T01:CDS
CCAATTGATCACATTTGGTT+TGG 0.352054 5:+29549651 MsG0580026038.01.T01:CDS
TTCTTTACATGTATTTAAGT+TGG 0.365055 5:+29550391 MsG0580026038.01.T01:CDS
CCCTTACAAATCTTACTTCA+AGG 0.369173 5:+29550658 MsG0580026038.01.T01:CDS
TCGATGGGTGGCAAACTAAT+AGG 0.371653 5:-29549942 None:intergenic
GCATAACCATGGAGCGAGAT+TGG 0.373158 5:+29549577 None:intergenic
CCAAACCAAATGTGATCAAT+TGG 0.396537 5:-29549651 None:intergenic
GGTGAGAAGGTTTATAAATA+GGG 0.399787 5:+29550343 MsG0580026038.01.T01:CDS
AACATAAAGCATGGAAGCTT+GGG 0.400176 5:+29550626 MsG0580026038.01.T01:CDS
TACTTATTTAGTGAAATCAT+TGG 0.416138 5:+29550304 MsG0580026038.01.T01:CDS
CATTACATTCTACAATGGTT+TGG 0.419262 5:+29550154 MsG0580026038.01.T01:CDS
TTGTTGTTCAAGTGACCCTT+GGG 0.420344 5:+29550220 MsG0580026038.01.T01:CDS
GCTGCAACCACATAATCATT+TGG 0.420868 5:-29550038 None:intergenic
TAATGTCGATGAAACCAAAA+TGG 0.420892 5:-29550136 None:intergenic
TTTGTTGTTCAAGTGACCCT+TGG 0.424584 5:+29550219 MsG0580026038.01.T01:CDS
AAAAGGTGGCACAACCCATA+TGG 0.432547 5:-29550693 None:intergenic
AGGGTATGACACCTCCCATA+TGG 0.446486 5:+29550678 MsG0580026038.01.T01:CDS
CATAACCATGGAGCGAGATT+GGG 0.451858 5:+29549578 None:intergenic
TAACATAAAGCATGGAAGCT+TGG 0.452049 5:+29550625 MsG0580026038.01.T01:CDS
TCTAATCAATTCCATTGAAA+AGG 0.463896 5:-29550710 None:intergenic
GAGAGTTGTGGATGGTGAGA+AGG 0.464771 5:+29550330 MsG0580026038.01.T01:CDS
TCAAAAGGACCTCTAGGATA+AGG 0.471573 5:-29550590 None:intergenic
TTTCTCGAGTTATCTACAAA+AGG 0.478188 5:+29550523 MsG0580026038.01.T01:CDS
CCCTTGAAGTAAGATTTGTA+AGG 0.492529 5:-29550659 None:intergenic
TTATATATTCCCATATCAAA+AGG 0.502379 5:-29550605 None:intergenic
TTCAAGTGACCCTTGGGGTG+AGG 0.507251 5:+29550226 MsG0580026038.01.T01:CDS
CCTTACAAATCTTACTTCAA+GGG 0.508856 5:+29550659 MsG0580026038.01.T01:CDS
TGTGCATAAGGTTACATTGT+CGG 0.510731 5:+29549998 MsG0580026038.01.T01:intron
AACAAGTCCAAATGATTATG+TGG 0.518480 5:+29550031 MsG0580026038.01.T01:CDS
GGGTATGACACCTCCCATAT+GGG 0.531392 5:+29550679 MsG0580026038.01.T01:CDS
TCTGAAGGGATCATTAACAT+AGG 0.534709 5:-29549750 None:intergenic
GCTGTGGCTCAAGTCATGGC+TGG 0.535182 5:+29549859 MsG0580026038.01.T01:CDS
GATTTCACTAAATAAGTAAG+TGG 0.538843 5:-29550299 None:intergenic
AAAGGTGGCACAACCCATAT+GGG 0.541900 5:-29550692 None:intergenic
TGTCTAGCTTTCATAAAAGC+AGG 0.542520 5:+29550080 MsG0580026038.01.T01:CDS
GCATACCATATAATTATCGA+TGG 0.543157 5:-29549958 None:intergenic
TTACGACTACAATGTGCATA+AGG 0.543562 5:+29549986 MsG0580026038.01.T01:intron
GGAATATATAACATAAAGCA+TGG 0.549074 5:+29550617 MsG0580026038.01.T01:CDS
TATTTAGTGAAATCATTGGA+GGG 0.549492 5:+29550308 MsG0580026038.01.T01:CDS
AAGTTGGAATTGAATGACAA+AGG 0.553747 5:+29550407 MsG0580026038.01.T01:CDS
AATCAATTCCATTGAAAAGG+TGG 0.555145 5:-29550707 None:intergenic
GTTTGCCCAATCTCGCTCCA+TGG 0.556567 5:-29549583 None:intergenic
CGATAATTATATGGTATGCA+AGG 0.558559 5:+29549962 MsG0580026038.01.T01:intron
CCCATATCAAAAGGACCTCT+AGG 0.561580 5:-29550596 None:intergenic
TTATTTAGTGAAATCATTGG+AGG 0.564804 5:+29550307 MsG0580026038.01.T01:CDS
GGAATTCTTTCCTCACCCCA+AGG 0.565481 5:-29550236 None:intergenic
ACGAAGAAGATGTCATCACT+TGG 0.566470 5:+29549895 MsG0580026038.01.T01:CDS
CCTTGAAGTAAGATTTGTAA+GGG 0.568583 5:-29550658 None:intergenic
GGACCTCTAGGATAAGGAAC+CGG 0.579650 5:-29550584 None:intergenic
TAATTATTATAACGAAGTAC+CGG 0.581850 5:+29550565 MsG0580026038.01.T01:CDS
ATCGACATTACATTCTACAA+TGG 0.582494 5:+29550149 MsG0580026038.01.T01:CDS
GAATTCTTTCCTCACCCCAA+GGG 0.583805 5:-29550235 None:intergenic
TGGTGTATGCCGTAACTCGT+TGG 0.604557 5:+29550174 MsG0580026038.01.T01:CDS
AATCATTGGAGGGAGAGTTG+TGG 0.606251 5:+29550318 MsG0580026038.01.T01:CDS
CAAAACAACAAGAGATGCTG+TGG 0.609992 5:+29549843 MsG0580026038.01.T01:CDS
AGATGCTGTGGCTCAAGTCA+TGG 0.616921 5:+29549855 MsG0580026038.01.T01:CDS
ACCATATAATTATCGATGGG+TGG 0.621050 5:-29549954 None:intergenic
CGAAGAAGATGTCATCACTT+GGG 0.623448 5:+29549896 MsG0580026038.01.T01:CDS
TTATGAAAGCTAGACAGCCA+CGG 0.638641 5:-29550073 None:intergenic
CATACCATATAATTATCGAT+GGG 0.639231 5:-29549957 None:intergenic
GTACCGGTTCCTTATCCTAG+AGG 0.650762 5:+29550581 MsG0580026038.01.T01:CDS
AGGGTCAACAATATCAACAA+AGG 0.663310 5:+29550362 MsG0580026038.01.T01:CDS
GCAGCAATTTACACTGACCG+TGG 0.685734 5:+29550056 MsG0580026038.01.T01:CDS
ATTGGAGGGAGAGTTGTGGA+TGG 0.690403 5:+29550322 MsG0580026038.01.T01:CDS
GGTGGCACAACCCATATGGG+AGG 0.700789 5:-29550689 None:intergenic
TGTTGTTCAAGTGACCCTTG+GGG 0.723751 5:+29550221 MsG0580026038.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTATTATAACGAAGTAC+CGG + Chr5:29550565-29550584 MsG0580026038.01.T01:CDS 20.0%
!! TACTTATTTAGTGAAATCAT+TGG + Chr5:29550304-29550323 MsG0580026038.01.T01:CDS 20.0%
!! TTATATATTCCCATATCAAA+AGG - Chr5:29550608-29550627 None:intergenic 20.0%
!! TTCTTTACATGTATTTAAGT+TGG + Chr5:29550391-29550410 MsG0580026038.01.T01:CDS 20.0%
! CATACCATATAATTATCGAT+GGG - Chr5:29549960-29549979 None:intergenic 25.0%
! CTTCTTTGTAACAAAACATT+TGG - Chr5:29550260-29550279 None:intergenic 25.0%
! GATTTCACTAAATAAGTAAG+TGG - Chr5:29550302-29550321 None:intergenic 25.0%
! GGAATATATAACATAAAGCA+TGG + Chr5:29550617-29550636 MsG0580026038.01.T01:CDS 25.0%
! TATTTAGTGAAATCATTGGA+GGG + Chr5:29550308-29550327 MsG0580026038.01.T01:CDS 25.0%
! TTATTTAGTGAAATCATTGG+AGG + Chr5:29550307-29550326 MsG0580026038.01.T01:CDS 25.0%
!! TTTTGCATTGTCAATTCTAA+TGG - Chr5:29549828-29549847 None:intergenic 25.0%
!!! AATATTTTATTTGTGGGTGA+TGG + Chr5:29550473-29550492 MsG0580026038.01.T01:CDS 25.0%
!!! AATTTTTTTCCAACGAGTTA+CGG - Chr5:29550186-29550205 None:intergenic 25.0%
!!! AGGAGACAATATTTTATTTG+TGG + Chr5:29550466-29550485 MsG0580026038.01.T01:CDS 25.0%
!!! GGAGACAATATTTTATTTGT+GGG + Chr5:29550467-29550486 MsG0580026038.01.T01:CDS 25.0%
!!! TAATCATTTGGACTTGTTAT+AGG - Chr5:29550029-29550048 None:intergenic 25.0%
AACAAGTCCAAATGATTATG+TGG + Chr5:29550031-29550050 MsG0580026038.01.T01:CDS 30.0%
AAGTTGGAATTGAATGACAA+AGG + Chr5:29550407-29550426 MsG0580026038.01.T01:CDS 30.0%
ATCGACATTACATTCTACAA+TGG + Chr5:29550149-29550168 MsG0580026038.01.T01:CDS 30.0%
CATTACATTCTACAATGGTT+TGG + Chr5:29550154-29550173 MsG0580026038.01.T01:CDS 30.0%
CCTTACAAATCTTACTTCAA+GGG + Chr5:29550659-29550678 MsG0580026038.01.T01:CDS 30.0%
CCTTGAAGTAAGATTTGTAA+GGG - Chr5:29550661-29550680 None:intergenic 30.0%
CGATAATTATATGGTATGCA+AGG + Chr5:29549962-29549981 MsG0580026038.01.T01:intron 30.0%
GCATACCATATAATTATCGA+TGG - Chr5:29549961-29549980 None:intergenic 30.0%
GCATTATATTGCTCCTAAAT+TGG - Chr5:29549731-29549750 None:intergenic 30.0%
GGTGAGAAGGTTTATAAATA+GGG + Chr5:29550343-29550362 MsG0580026038.01.T01:CDS 30.0%
TAATGTCGATGAAACCAAAA+TGG - Chr5:29550139-29550158 None:intergenic 30.0%
TGGTGAGAAGGTTTATAAAT+AGG + Chr5:29550342-29550361 MsG0580026038.01.T01:CDS 30.0%
TTGAACCAATTGATCACATT+TGG + Chr5:29549646-29549665 MsG0580026038.01.T01:CDS 30.0%
TTTCTCGAGTTATCTACAAA+AGG + Chr5:29550523-29550542 MsG0580026038.01.T01:CDS 30.0%
AACATAAAGCATGGAAGCTT+GGG + Chr5:29550626-29550645 MsG0580026038.01.T01:CDS 35.0%
AATGGATACACTCTATTTGC+AGG - Chr5:29549810-29549829 None:intergenic 35.0%
ACCATATAATTATCGATGGG+TGG - Chr5:29549957-29549976 None:intergenic 35.0%
AGGGTCAACAATATCAACAA+AGG + Chr5:29550362-29550381 MsG0580026038.01.T01:CDS 35.0%
ATAGGAGCAACATCCTTAAA+TGG - Chr5:29549927-29549946 None:intergenic 35.0%
ATCAACACGATCACCAATTT+AGG + Chr5:29549715-29549734 MsG0580026038.01.T01:CDS 35.0%
CCAAACCAAATGTGATCAAT+TGG - Chr5:29549654-29549673 None:intergenic 35.0%
CCAATTGATCACATTTGGTT+TGG + Chr5:29549651-29549670 MsG0580026038.01.T01:CDS 35.0%
CCCTTACAAATCTTACTTCA+AGG + Chr5:29550658-29550677 MsG0580026038.01.T01:CDS 35.0%
CCCTTGAAGTAAGATTTGTA+AGG - Chr5:29550662-29550681 None:intergenic 35.0%
TAACATAAAGCATGGAAGCT+TGG + Chr5:29550625-29550644 MsG0580026038.01.T01:CDS 35.0%
TCTGAAGGGATCATTAACAT+AGG - Chr5:29549753-29549772 None:intergenic 35.0%
TGTGCATAAGGTTACATTGT+CGG + Chr5:29549998-29550017 MsG0580026038.01.T01:intron 35.0%
TTACGACTACAATGTGCATA+AGG + Chr5:29549986-29550005 MsG0580026038.01.T01:intron 35.0%
! ATACAAGACACTGACCATTT+TGG + Chr5:29550122-29550141 MsG0580026038.01.T01:CDS 35.0%
! TAAAAGCAGGACAAGAGTTT+TGG + Chr5:29550093-29550112 MsG0580026038.01.T01:CDS 35.0%
! TTTCTGGACTGTTTTCTGAA+GGG - Chr5:29549767-29549786 None:intergenic 35.0%
! TTTTCTGGACTGTTTTCTGA+AGG - Chr5:29549768-29549787 None:intergenic 35.0%
!! CTATACAAACATCGCTTTTC+TGG - Chr5:29549783-29549802 None:intergenic 35.0%
!! TGTCTAGCTTTCATAAAAGC+AGG + Chr5:29550080-29550099 MsG0580026038.01.T01:CDS 35.0%
!! TTGGTTCTGTCTGCAAAAAT+TGG + Chr5:29549670-29549689 MsG0580026038.01.T01:CDS 35.0%
ACGAAGAAGATGTCATCACT+TGG + Chr5:29549895-29549914 MsG0580026038.01.T01:CDS 40.0%
CAAAACAACAAGAGATGCTG+TGG + Chr5:29549843-29549862 MsG0580026038.01.T01:CDS 40.0%
CACTTGGGAGAATCCATTTA+AGG + Chr5:29549911-29549930 MsG0580026038.01.T01:CDS 40.0%
CGAAGAAGATGTCATCACTT+GGG + Chr5:29549896-29549915 MsG0580026038.01.T01:CDS 40.0%
GCCACCCATCGATAATTATA+TGG + Chr5:29549953-29549972 MsG0580026038.01.T01:CDS 40.0%
GCTGCAACCACATAATCATT+TGG - Chr5:29550041-29550060 None:intergenic 40.0%
TTATGAAAGCTAGACAGCCA+CGG - Chr5:29550076-29550095 None:intergenic 40.0%
TTGTCGAGACTTGAGAGTTT+AGG + Chr5:29550446-29550465 MsG0580026038.01.T01:CDS 40.0%
! CCTAGAGGTCCTTTTGATAT+GGG + Chr5:29550596-29550615 MsG0580026038.01.T01:CDS 40.0%
! TCCTAGAGGTCCTTTTGATA+TGG + Chr5:29550595-29550614 MsG0580026038.01.T01:CDS 40.0%
! TTGTTGTTCAAGTGACCCTT+GGG + Chr5:29550220-29550239 MsG0580026038.01.T01:CDS 40.0%
!! TCAAAAGGACCTCTAGGATA+AGG - Chr5:29550593-29550612 None:intergenic 40.0%
!! TTTGTTGTTCAAGTGACCCT+TGG + Chr5:29550219-29550238 MsG0580026038.01.T01:CDS 40.0%
AAAAGGTGGCACAACCCATA+TGG - Chr5:29550696-29550715 None:intergenic 45.0%
AAAGGTGGCACAACCCATAT+GGG - Chr5:29550695-29550714 None:intergenic 45.0%
AATCATTGGAGGGAGAGTTG+TGG + Chr5:29550318-29550337 MsG0580026038.01.T01:CDS 45.0%
CCCATATCAAAAGGACCTCT+AGG - Chr5:29550599-29550618 None:intergenic 45.0%
GAATTCTTTCCTCACCCCAA+GGG - Chr5:29550238-29550257 None:intergenic 45.0%
TCGATGGGTGGCAAACTAAT+AGG - Chr5:29549945-29549964 None:intergenic 45.0%
TGTTGTTCAAGTGACCCTTG+GGG + Chr5:29550221-29550240 MsG0580026038.01.T01:CDS 45.0%
AGATGCTGTGGCTCAAGTCA+TGG + Chr5:29549855-29549874 MsG0580026038.01.T01:CDS 50.0%
AGGGTATGACACCTCCCATA+TGG + Chr5:29550678-29550697 MsG0580026038.01.T01:CDS 50.0%
ATTGGAGGGAGAGTTGTGGA+TGG + Chr5:29550322-29550341 MsG0580026038.01.T01:CDS 50.0%
GAGAGTTGTGGATGGTGAGA+AGG + Chr5:29550330-29550349 MsG0580026038.01.T01:CDS 50.0%
GCAGCAATTTACACTGACCG+TGG + Chr5:29550056-29550075 MsG0580026038.01.T01:CDS 50.0%
GGAATTCTTTCCTCACCCCA+AGG - Chr5:29550239-29550258 None:intergenic 50.0%
GGGTATGACACCTCCCATAT+GGG + Chr5:29550679-29550698 MsG0580026038.01.T01:CDS 50.0%
TGGTGTATGCCGTAACTCGT+TGG + Chr5:29550174-29550193 MsG0580026038.01.T01:CDS 50.0%
! GGGTTGTGCCACCTTTTCAA+TGG + Chr5:29550699-29550718 MsG0580026038.01.T01:CDS 50.0%
!! GGACCTCTAGGATAAGGAAC+CGG - Chr5:29550587-29550606 None:intergenic 50.0%
!! GTACCGGTTCCTTATCCTAG+AGG + Chr5:29550581-29550600 MsG0580026038.01.T01:CDS 50.0%
TTCAAGTGACCCTTGGGGTG+AGG + Chr5:29550226-29550245 MsG0580026038.01.T01:CDS 55.0%
GCTGTGGCTCAAGTCATGGC+TGG + Chr5:29549859-29549878 MsG0580026038.01.T01:CDS 60.0%
GGTGGCACAACCCATATGGG+AGG - Chr5:29550692-29550711 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 29549585 29550727 29549585 ID=MsG0580026038.01;Name=MsG0580026038.01
Chr5 mRNA 29549627 29550727 29549627 ID=MsG0580026038.01.T01;Parent=MsG0580026038.01;Name=MsG0580026038.01.T01;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|0|0|2|0|356
Chr5 exon 29549627 29549974 29549627 ID=MsG0580026038.01.T01:exon:7147;Parent=MsG0580026038.01.T01
Chr5 exon 29550005 29550727 29550005 ID=MsG0580026038.01.T01:exon:7148;Parent=MsG0580026038.01.T01
Chr5 CDS 29549627 29549974 29549627 ID=MsG0580026038.01.T01:cds;Parent=MsG0580026038.01.T01
Chr5 CDS 29550005 29550727 29550005 ID=MsG0580026038.01.T01:cds;Parent=MsG0580026038.01.T01
Chr5 mRNA 29549585 29550727 29549585 ID=MsG0580026038.01.T02;Parent=MsG0580026038.01;Name=MsG0580026038.01.T02;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|380
Chr5 exon 29549585 29550727 29549585 ID=MsG0580026038.01.T02:exon:7149;Parent=MsG0580026038.01.T02
Chr5 CDS 29549585 29550727 29549585 ID=MsG0580026038.01.T02:cds;Parent=MsG0580026038.01.T02
Gene Sequence

>MsG0580026038.01.T02

ATGGAGCGAGATTGGGCAAACTTAGACTCACTTGCTCTAAACATGATTCTTGAGAAGTTAATTGAACCAATTGATCACATTTGGTTTGGTTCTGTCTGCAAAAATTGGCACTCAGTTGCAGAGCTTAGTCATCAACACGATCACCAATTTAGGAGCAATATAATGCCTATGTTAATGATCCCTTCAGAAAACAGTCCAGAAAAGCGATGTTTGTATAGCATACCTGCAAATAGAGTGTATCCATTAGAATTGACAATGCAAAACAACAAGAGATGCTGTGGCTCAAGTCATGGCTGGCTCGCAACGTTAGACGAAGAAGATGTCATCACTTGGGAGAATCCATTTAAGGATGTTGCTCCTATTAGTTTGCCACCCATCGATAATTATATGGTATGCAAGGATTACGACTACAATGTGCATAAGGTTACATTGTCGGTTGATCCTATAACAAGTCCAAATGATTATGTGGTTGCAGCAATTTACACTGACCGTGGCTGTCTAGCTTTCATAAAAGCAGGACAAGAGTTTTGGACATACATACAAGACACTGACCATTTTGGTTTCATCGACATTACATTCTACAATGGTTTGGTGTATGCCGTAACTCGTTGGAAAAAAATTGTCTGCTTTGATCTTTGTTGTTCAAGTGACCCTTGGGGTGAGGAAAGAATTCCAAATGTTTTGTTACAAAGAAGCGATGATGCAATTTATTCTCCACTTACTTATTTAGTGAAATCATTGGAGGGAGAGTTGTGGATGGTGAGAAGGTTTATAAATAGGGTCAACAATATCAACAAAGGTACTAATTCTTTACATGTATTTAAGTTGGAATTGAATGACAAAGGTGAGAAGCTTATGAATTTGTCGAGACTTGAGAGTTTAGGAGACAATATTTTATTTGTGGGTGATGGCGATTCAATGTCAGCATCAGCTTCATATTTCTCGAGTTATCTACAAAAGGATTCTATTTACTATTCTGATAATTATTATAACGAAGTACCGGTTCCTTATCCTAGAGGTCCTTTTGATATGGGAATATATAACATAAAGCATGGAAGCTTGGGTATTCATTGCCCTTACAAATCTTACTTCAAGGGTATGACACCTCCCATATGGGTTGTGCCACCTTTTCAATGGAATTGA

>MsG0580026038.01.T01

ATGATTCTTGAGAAGTTAATTGAACCAATTGATCACATTTGGTTTGGTTCTGTCTGCAAAAATTGGCACTCAGTTGCAGAGCTTAGTCATCAACACGATCACCAATTTAGGAGCAATATAATGCCTATGTTAATGATCCCTTCAGAAAACAGTCCAGAAAAGCGATGTTTGTATAGCATACCTGCAAATAGAGTGTATCCATTAGAATTGACAATGCAAAACAACAAGAGATGCTGTGGCTCAAGTCATGGCTGGCTCGCAACGTTAGACGAAGAAGATGTCATCACTTGGGAGAATCCATTTAAGGATGTTGCTCCTATTAGTTTGCCACCCATCGATAATTATATGAAGGTTACATTGTCGGTTGATCCTATAACAAGTCCAAATGATTATGTGGTTGCAGCAATTTACACTGACCGTGGCTGTCTAGCTTTCATAAAAGCAGGACAAGAGTTTTGGACATACATACAAGACACTGACCATTTTGGTTTCATCGACATTACATTCTACAATGGTTTGGTGTATGCCGTAACTCGTTGGAAAAAAATTGTCTGCTTTGATCTTTGTTGTTCAAGTGACCCTTGGGGTGAGGAAAGAATTCCAAATGTTTTGTTACAAAGAAGCGATGATGCAATTTATTCTCCACTTACTTATTTAGTGAAATCATTGGAGGGAGAGTTGTGGATGGTGAGAAGGTTTATAAATAGGGTCAACAATATCAACAAAGGTACTAATTCTTTACATGTATTTAAGTTGGAATTGAATGACAAAGGTGAGAAGCTTATGAATTTGTCGAGACTTGAGAGTTTAGGAGACAATATTTTATTTGTGGGTGATGGCGATTCAATGTCAGCATCAGCTTCATATTTCTCGAGTTATCTACAAAAGGATTCTATTTACTATTCTGATAATTATTATAACGAAGTACCGGTTCCTTATCCTAGAGGTCCTTTTGATATGGGAATATATAACATAAAGCATGGAAGCTTGGGTATTCATTGCCCTTACAAATCTTACTTCAAGGGTATGACACCTCCCATATGGGTTGTGCCACCTTTTCAATGGAATTGA
Protein sequence

>MsG0580026038.01.T02

MERDWANLDSLALNMILEKLIEPIDHIWFGSVCKNWHSVAELSHQHDHQFRSNIMPMLMIPSENSPEKRCLYSIPANRVYPLELTMQNNKRCCGSSHGWLATLDEEDVITWENPFKDVAPISLPPIDNYMVCKDYDYNVHKVTLSVDPITSPNDYVVAAIYTDRGCLAFIKAGQEFWTYIQDTDHFGFIDITFYNGLVYAVTRWKKIVCFDLCCSSDPWGEERIPNVLLQRSDDAIYSPLTYLVKSLEGELWMVRRFINRVNNINKGTNSLHVFKLELNDKGEKLMNLSRLESLGDNILFVGDGDSMSASASYFSSYLQKDSIYYSDNYYNEVPVPYPRGPFDMGIYNIKHGSLGIHCPYKSYFKGMTPPIWVVPPFQWN*

>MsG0580026038.01.T01

MILEKLIEPIDHIWFGSVCKNWHSVAELSHQHDHQFRSNIMPMLMIPSENSPEKRCLYSIPANRVYPLELTMQNNKRCCGSSHGWLATLDEEDVITWENPFKDVAPISLPPIDNYMKVTLSVDPITSPNDYVVAAIYTDRGCLAFIKAGQEFWTYIQDTDHFGFIDITFYNGLVYAVTRWKKIVCFDLCCSSDPWGEERIPNVLLQRSDDAIYSPLTYLVKSLEGELWMVRRFINRVNNINKGTNSLHVFKLELNDKGEKLMNLSRLESLGDNILFVGDGDSMSASASYFSSYLQKDSIYYSDNYYNEVPVPYPRGPFDMGIYNIKHGSLGIHCPYKSYFKGMTPPIWVVPPFQWN*