Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026039.01.T01 | XP_003613576.1 | 92.913 | 381 | 26 | 1 | 1 | 380 | 3 | 383 | 0 | 738 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026039.01.T01 | G7K9R3 | 92.913 | 381 | 26 | 1 | 1 | 380 | 3 | 383 | 0.0 | 738 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026039.01.T01 | MTR_5g038260 | 92.913 | 381 | 26 | 1 | 1 | 380 | 3 | 383 | 0.0 | 738 |
| MsG0580026039.01.T01 | MTR_5g038230 | 85.263 | 380 | 31 | 2 | 1 | 380 | 1 | 355 | 0.0 | 660 |
| MsG0580026039.01.T01 | MTR_1g064570 | 49.380 | 403 | 178 | 8 | 1 | 380 | 1 | 400 | 2.14e-129 | 377 |
| MsG0580026039.01.T01 | MTR_1g108740 | 44.648 | 383 | 165 | 11 | 2 | 378 | 3 | 344 | 1.13e-96 | 292 |
| MsG0580026039.01.T01 | MTR_5g082770 | 50.654 | 306 | 131 | 10 | 1 | 303 | 1 | 289 | 1.26e-85 | 261 |
| MsG0580026039.01.T01 | MTR_7g077620 | 43.207 | 368 | 166 | 13 | 4 | 353 | 5 | 347 | 4.44e-79 | 248 |
| MsG0580026039.01.T01 | MTR_7g077660 | 42.065 | 397 | 177 | 16 | 4 | 380 | 5 | 368 | 5.36e-78 | 245 |
| MsG0580026039.01.T01 | MTR_7g077650 | 40.247 | 405 | 177 | 18 | 4 | 380 | 5 | 372 | 1.92e-73 | 233 |
| MsG0580026039.01.T01 | MTR_5g082780 | 44.444 | 252 | 119 | 7 | 103 | 351 | 1 | 234 | 1.22e-54 | 180 |
| MsG0580026039.01.T01 | MTR_7g076110 | 37.975 | 316 | 161 | 13 | 77 | 380 | 21 | 313 | 3.88e-46 | 160 |
| MsG0580026039.01.T01 | MTR_1g016150 | 45.503 | 189 | 78 | 8 | 2 | 177 | 3 | 179 | 6.19e-43 | 150 |
| MsG0580026039.01.T01 | MTR_1g016150 | 55.072 | 69 | 24 | 1 | 248 | 316 | 175 | 236 | 2.46e-14 | 72.4 |
| MsG0580026039.01.T01 | MTR_7g076100 | 39.921 | 253 | 120 | 10 | 139 | 380 | 69 | 300 | 8.88e-38 | 138 |
| MsG0580026039.01.T01 | MTR_7g076100 | 60.000 | 50 | 19 | 1 | 4 | 53 | 6 | 54 | 7.33e-12 | 65.9 |
| MsG0580026039.01.T01 | MTR_1g108750 | 44.304 | 158 | 53 | 4 | 1 | 157 | 1 | 124 | 6.74e-26 | 101 |
| MsG0580026039.01.T01 | MTR_6g023955 | 50.442 | 113 | 48 | 3 | 112 | 217 | 40 | 151 | 1.02e-25 | 103 |
| MsG0580026039.01.T01 | MTR_6g023955 | 57.377 | 61 | 26 | 0 | 319 | 379 | 149 | 209 | 1.52e-18 | 83.6 |
| MsG0580026039.01.T01 | MTR_3g114970 | 26.087 | 391 | 234 | 16 | 1 | 375 | 1 | 352 | 3.73e-21 | 94.0 |
| MsG0580026039.01.T01 | MTR_3g114990 | 26.683 | 416 | 236 | 17 | 1 | 375 | 20 | 407 | 3.60e-20 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTATATTGCTCCTAAAT+TGG | 0.217987 | 5:-29598718 | None:intergenic |
| TGGTGAGAAGGTTTATAAAT+AGG | 0.247820 | 5:+29599332 | MsG0580026039.01.T01:CDS |
| GGTGATCATGTTGATGATTA+AGG | 0.258043 | 5:-29598697 | None:intergenic |
| TAATCATCTGGACTTGTTAT+AGG | 0.276577 | 5:-29599016 | None:intergenic |
| ATACAAGACACTGACCATTT+TGG | 0.281472 | 5:+29599112 | MsG0580026039.01.T01:CDS |
| TAAAAGCAGGACAAGAGTTT+TGG | 0.281524 | 5:+29599083 | MsG0580026039.01.T01:CDS |
| ATCAACATGATCACCAATTT+AGG | 0.300778 | 5:+29598705 | MsG0580026039.01.T01:CDS |
| CTTCTTTGTAACAAAACATT+TGG | 0.301077 | 5:-29599247 | None:intergenic |
| TTGTTATTCAAGTGACCCTT+GGG | 0.317511 | 5:+29599210 | MsG0580026039.01.T01:CDS |
| TTAAGCATTGTCAATTCTAA+TGG | 0.317587 | 5:-29598815 | None:intergenic |
| ATAGGAGCAACATCCTTAAA+AGG | 0.318392 | 5:-29598914 | None:intergenic |
| TTGTCGAAACTTGAGAGTTT+AGG | 0.326449 | 5:+29599436 | MsG0580026039.01.T01:CDS |
| GCCACCCATCGATAATTATA+TGG | 0.334313 | 5:+29598943 | MsG0580026039.01.T01:CDS |
| TTGAACCAATTGATCACATT+TGG | 0.344806 | 5:+29598636 | MsG0580026039.01.T01:CDS |
| CCAATTGATCACATTTGGTT+TGG | 0.352054 | 5:+29598641 | MsG0580026039.01.T01:CDS |
| TTCTTTACATGTATTTAAGT+TGG | 0.365055 | 5:+29599381 | MsG0580026039.01.T01:CDS |
| TCGATGGGTGGCAAACTAAT+AGG | 0.371653 | 5:-29598932 | None:intergenic |
| GCATAGCCATGGAGCGAGAT+TGG | 0.373158 | 5:+29598567 | None:intergenic |
| AATGGATACACTCTATTTGC+TGG | 0.375390 | 5:-29598797 | None:intergenic |
| CCCTTGAAGTAAGGTTTGTA+AGG | 0.376047 | 5:-29599649 | None:intergenic |
| CCCTTACAAACCTTACTTCA+AGG | 0.383312 | 5:+29599648 | MsG0580026039.01.T01:CDS |
| CCAAACCAAATGTGATCAAT+TGG | 0.396537 | 5:-29598641 | None:intergenic |
| GGTGAGAAGGTTTATAAATA+GGG | 0.399787 | 5:+29599333 | MsG0580026039.01.T01:CDS |
| TACTTATTTAGTGAAATCAT+TGG | 0.416138 | 5:+29599294 | MsG0580026039.01.T01:CDS |
| CATTACATTCTACAATGGTT+TGG | 0.419262 | 5:+29599144 | MsG0580026039.01.T01:CDS |
| TAATGTCGATGAAACCAAAA+TGG | 0.420892 | 5:-29599126 | None:intergenic |
| AACGTAAAACATGGAAGCTT+GGG | 0.422361 | 5:+29599616 | MsG0580026039.01.T01:CDS |
| AAAAGGTGGCACAACCCATA+TGG | 0.433261 | 5:-29599683 | None:intergenic |
| AGGGTATGACACCTCCCATA+TGG | 0.446486 | 5:+29599668 | MsG0580026039.01.T01:CDS |
| CATAGCCATGGAGCGAGATT+GGG | 0.453674 | 5:+29598568 | None:intergenic |
| TCTAATCAATTCCACTGAAA+AGG | 0.457215 | 5:-29599700 | None:intergenic |
| TAACGTAAAACATGGAAGCT+TGG | 0.463159 | 5:+29599615 | MsG0580026039.01.T01:CDS |
| GAGAGTTGTGGATGGTGAGA+AGG | 0.464771 | 5:+29599320 | MsG0580026039.01.T01:CDS |
| TTACGACTTCAATGTGCATA+AGG | 0.467976 | 5:+29598976 | MsG0580026039.01.T01:CDS |
| GGTGTCATACCCTTGAAGTA+AGG | 0.468768 | 5:-29599658 | None:intergenic |
| TCAAAAGGACCTCTAGGATA+AGG | 0.471573 | 5:-29599580 | None:intergenic |
| TTTGTTATTCAAGTGACCCT+TGG | 0.473541 | 5:+29599209 | MsG0580026039.01.T01:CDS |
| CCTTACAAACCTTACTTCAA+GGG | 0.500600 | 5:+29599649 | MsG0580026039.01.T01:CDS |
| GCTGCAACCACATAATCATC+TGG | 0.504303 | 5:-29599028 | None:intergenic |
| TTATATATTCCCATATCAAA+AGG | 0.509410 | 5:-29599595 | None:intergenic |
| TTCAAGTGACCCTTGGGGTG+AGG | 0.511989 | 5:+29599216 | MsG0580026039.01.T01:CDS |
| TTTCTGGACTCTTCTCTGAA+GGG | 0.527378 | 5:-29598754 | None:intergenic |
| GGGTATGACACCTCCCATAT+GGG | 0.531392 | 5:+29599669 | MsG0580026039.01.T01:CDS |
| CTTAACAACAAGAGATGTTG+TGG | 0.537010 | 5:+29598833 | MsG0580026039.01.T01:CDS |
| GATTTCACTAAATAAGTAAG+TGG | 0.538843 | 5:-29599289 | None:intergenic |
| AAAGGTGGCACAACCCATAT+GGG | 0.541900 | 5:-29599682 | None:intergenic |
| TGTCTAGCTTTCATAAAAGC+AGG | 0.542520 | 5:+29599070 | MsG0580026039.01.T01:CDS |
| ACGTACCATATAATTATCGA+TGG | 0.547777 | 5:-29598948 | None:intergenic |
| TATTTAGTGAAATCATTGGA+GGG | 0.549492 | 5:+29599298 | MsG0580026039.01.T01:CDS |
| AAGTTGGAATTGAATGACAA+AGG | 0.553747 | 5:+29599397 | MsG0580026039.01.T01:CDS |
| CCTTGAAGTAAGGTTTGTAA+GGG | 0.554707 | 5:-29599648 | None:intergenic |
| ATGAAGAAGATGTCATCACT+TGG | 0.556999 | 5:+29598885 | MsG0580026039.01.T01:CDS |
| TATGAAAGCTAGACAGCCAC+GGG | 0.557625 | 5:-29599062 | None:intergenic |
| CCCATATCAAAAGGACCTCT+AGG | 0.561580 | 5:-29599586 | None:intergenic |
| TTATTTAGTGAAATCATTGG+AGG | 0.564804 | 5:+29599297 | MsG0580026039.01.T01:CDS |
| AACAAGTCCAGATGATTATG+TGG | 0.565322 | 5:+29599021 | MsG0580026039.01.T01:CDS |
| GGAATTCTTTCCTCACCCCA+AGG | 0.565481 | 5:-29599226 | None:intergenic |
| TAATTATTATAATGAAGTAC+CGG | 0.574818 | 5:+29599555 | MsG0580026039.01.T01:CDS |
| GGACCTCTAGGATAAGGAAC+CGG | 0.579650 | 5:-29599574 | None:intergenic |
| AATCAATTCCACTGAAAAGG+TGG | 0.581608 | 5:-29599697 | None:intergenic |
| ATCGACATTACATTCTACAA+TGG | 0.582494 | 5:+29599139 | MsG0580026039.01.T01:CDS |
| GAATTCTTTCCTCACCCCAA+GGG | 0.583805 | 5:-29599225 | None:intergenic |
| GTTTGCCCAATCTCGCTCCA+TGG | 0.583904 | 5:-29598573 | None:intergenic |
| TTATGAAAGCTAGACAGCCA+CGG | 0.592955 | 5:-29599063 | None:intergenic |
| GTTGTGGATCAAGTCATGGC+TGG | 0.604230 | 5:+29598849 | MsG0580026039.01.T01:CDS |
| TGGTGTATGCCGTAACTCGT+TGG | 0.604557 | 5:+29599164 | MsG0580026039.01.T01:CDS |
| AATCATTGGAGGGAGAGTTG+TGG | 0.606251 | 5:+29599308 | MsG0580026039.01.T01:CDS |
| GGAATATATAACGTAAAACA+TGG | 0.617818 | 5:+29599607 | MsG0580026039.01.T01:CDS |
| TGAAGAAGATGTCATCACTT+GGG | 0.618886 | 5:+29598886 | MsG0580026039.01.T01:CDS |
| TCTGAAGGGATCATTAGCAT+AGG | 0.622050 | 5:-29598740 | None:intergenic |
| ACCATATAATTATCGATGGG+TGG | 0.627867 | 5:-29598944 | None:intergenic |
| CGTACCATATAATTATCGAT+GGG | 0.639191 | 5:-29598947 | None:intergenic |
| GCAGCAATTTACACTACCCG+TGG | 0.645826 | 5:+29599046 | MsG0580026039.01.T01:CDS |
| AGATGTTGTGGATCAAGTCA+TGG | 0.649193 | 5:+29598845 | MsG0580026039.01.T01:CDS |
| GTACCGGTTCCTTATCCTAG+AGG | 0.650762 | 5:+29599571 | MsG0580026039.01.T01:CDS |
| AGGGTCAACAATATCAACAA+AGG | 0.663310 | 5:+29599352 | MsG0580026039.01.T01:CDS |
| TGTTATTCAAGTGACCCTTG+GGG | 0.675329 | 5:+29599211 | MsG0580026039.01.T01:CDS |
| ATTGGAGGGAGAGTTGTGGA+TGG | 0.690403 | 5:+29599312 | MsG0580026039.01.T01:CDS |
| GGTGGCACAACCCATATGGG+AGG | 0.700789 | 5:-29599679 | None:intergenic |
| TGTTATAGGATCAACTGACA+AGG | 0.708968 | 5:-29599002 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATTATAATGAAGTAC+CGG | + | Chr5:29599555-29599574 | MsG0580026039.01.T01:CDS | 15.0% |
| !! | TACTTATTTAGTGAAATCAT+TGG | + | Chr5:29599294-29599313 | MsG0580026039.01.T01:CDS | 20.0% |
| !! | TTATATATTCCCATATCAAA+AGG | - | Chr5:29599598-29599617 | None:intergenic | 20.0% |
| !! | TTCTTTACATGTATTTAAGT+TGG | + | Chr5:29599381-29599400 | MsG0580026039.01.T01:CDS | 20.0% |
| ! | CTTCTTTGTAACAAAACATT+TGG | - | Chr5:29599250-29599269 | None:intergenic | 25.0% |
| ! | GATTTCACTAAATAAGTAAG+TGG | - | Chr5:29599292-29599311 | None:intergenic | 25.0% |
| ! | GGAATATATAACGTAAAACA+TGG | + | Chr5:29599607-29599626 | MsG0580026039.01.T01:CDS | 25.0% |
| ! | TATTTAGTGAAATCATTGGA+GGG | + | Chr5:29599298-29599317 | MsG0580026039.01.T01:CDS | 25.0% |
| ! | TTATTTAGTGAAATCATTGG+AGG | + | Chr5:29599297-29599316 | MsG0580026039.01.T01:CDS | 25.0% |
| !! | TTAAGCATTGTCAATTCTAA+TGG | - | Chr5:29598818-29598837 | None:intergenic | 25.0% |
| !!! | AATTTTTTTCCAACGAGTTA+CGG | - | Chr5:29599176-29599195 | None:intergenic | 25.0% |
| AAGTTGGAATTGAATGACAA+AGG | + | Chr5:29599397-29599416 | MsG0580026039.01.T01:CDS | 30.0% | |
| ACGTACCATATAATTATCGA+TGG | - | Chr5:29598951-29598970 | None:intergenic | 30.0% | |
| ATCAACATGATCACCAATTT+AGG | + | Chr5:29598705-29598724 | MsG0580026039.01.T01:CDS | 30.0% | |
| ATCGACATTACATTCTACAA+TGG | + | Chr5:29599139-29599158 | MsG0580026039.01.T01:CDS | 30.0% | |
| CATTACATTCTACAATGGTT+TGG | + | Chr5:29599144-29599163 | MsG0580026039.01.T01:CDS | 30.0% | |
| CGTACCATATAATTATCGAT+GGG | - | Chr5:29598950-29598969 | None:intergenic | 30.0% | |
| GCATTATATTGCTCCTAAAT+TGG | - | Chr5:29598721-29598740 | None:intergenic | 30.0% | |
| GGTGAGAAGGTTTATAAATA+GGG | + | Chr5:29599333-29599352 | MsG0580026039.01.T01:CDS | 30.0% | |
| TAATGTCGATGAAACCAAAA+TGG | - | Chr5:29599129-29599148 | None:intergenic | 30.0% | |
| TGGTGAGAAGGTTTATAAAT+AGG | + | Chr5:29599332-29599351 | MsG0580026039.01.T01:CDS | 30.0% | |
| TTGAACCAATTGATCACATT+TGG | + | Chr5:29598636-29598655 | MsG0580026039.01.T01:CDS | 30.0% | |
| !! | TAATCATCTGGACTTGTTAT+AGG | - | Chr5:29599019-29599038 | None:intergenic | 30.0% |
| AACAAGTCCAGATGATTATG+TGG | + | Chr5:29599021-29599040 | MsG0580026039.01.T01:CDS | 35.0% | |
| AACGTAAAACATGGAAGCTT+GGG | + | Chr5:29599616-29599635 | MsG0580026039.01.T01:CDS | 35.0% | |
| AATGGATACACTCTATTTGC+TGG | - | Chr5:29598800-29598819 | None:intergenic | 35.0% | |
| ACCATATAATTATCGATGGG+TGG | - | Chr5:29598947-29598966 | None:intergenic | 35.0% | |
| AGGGTCAACAATATCAACAA+AGG | + | Chr5:29599352-29599371 | MsG0580026039.01.T01:CDS | 35.0% | |
| ATAGGAGCAACATCCTTAAA+AGG | - | Chr5:29598917-29598936 | None:intergenic | 35.0% | |
| ATGAAGAAGATGTCATCACT+TGG | + | Chr5:29598885-29598904 | MsG0580026039.01.T01:CDS | 35.0% | |
| CCAAACCAAATGTGATCAAT+TGG | - | Chr5:29598644-29598663 | None:intergenic | 35.0% | |
| CCAATTGATCACATTTGGTT+TGG | + | Chr5:29598641-29598660 | MsG0580026039.01.T01:CDS | 35.0% | |
| CCTTACAAACCTTACTTCAA+GGG | + | Chr5:29599649-29599668 | MsG0580026039.01.T01:CDS | 35.0% | |
| CCTTGAAGTAAGGTTTGTAA+GGG | - | Chr5:29599651-29599670 | None:intergenic | 35.0% | |
| CTTAACAACAAGAGATGTTG+TGG | + | Chr5:29598833-29598852 | MsG0580026039.01.T01:CDS | 35.0% | |
| TAACGTAAAACATGGAAGCT+TGG | + | Chr5:29599615-29599634 | MsG0580026039.01.T01:CDS | 35.0% | |
| TGAAGAAGATGTCATCACTT+GGG | + | Chr5:29598886-29598905 | MsG0580026039.01.T01:CDS | 35.0% | |
| TGTTATAGGATCAACTGACA+AGG | - | Chr5:29599005-29599024 | None:intergenic | 35.0% | |
| TTACGACTTCAATGTGCATA+AGG | + | Chr5:29598976-29598995 | MsG0580026039.01.T01:CDS | 35.0% | |
| TTGGTTTCGTCTGCAAAAAT+TGG | + | Chr5:29598660-29598679 | MsG0580026039.01.T01:CDS | 35.0% | |
| TTGTCGAAACTTGAGAGTTT+AGG | + | Chr5:29599436-29599455 | MsG0580026039.01.T01:CDS | 35.0% | |
| ! | ATACAAGACACTGACCATTT+TGG | + | Chr5:29599112-29599131 | MsG0580026039.01.T01:CDS | 35.0% |
| ! | TAAAAGCAGGACAAGAGTTT+TGG | + | Chr5:29599083-29599102 | MsG0580026039.01.T01:CDS | 35.0% |
| ! | TTGTTATTCAAGTGACCCTT+GGG | + | Chr5:29599210-29599229 | MsG0580026039.01.T01:CDS | 35.0% |
| !! | CTAAACAAACATCGCTTTTC+TGG | - | Chr5:29598773-29598792 | None:intergenic | 35.0% |
| !! | GGTGATCATGTTGATGATTA+AGG | - | Chr5:29598700-29598719 | None:intergenic | 35.0% |
| !! | TGTCTAGCTTTCATAAAAGC+AGG | + | Chr5:29599070-29599089 | MsG0580026039.01.T01:CDS | 35.0% |
| !! | TTTGTTATTCAAGTGACCCT+TGG | + | Chr5:29599209-29599228 | MsG0580026039.01.T01:CDS | 35.0% |
| !!! | AATGTTTTGTTTGTGGGTGA+TGG | + | Chr5:29599463-29599482 | MsG0580026039.01.T01:CDS | 35.0% |
| !!! | AGGAGACAATGTTTTGTTTG+TGG | + | Chr5:29599456-29599475 | MsG0580026039.01.T01:CDS | 35.0% |
| !!! | GGAGACAATGTTTTGTTTGT+GGG | + | Chr5:29599457-29599476 | MsG0580026039.01.T01:CDS | 35.0% |
| AGATGTTGTGGATCAAGTCA+TGG | + | Chr5:29598845-29598864 | MsG0580026039.01.T01:CDS | 40.0% | |
| CCCTTACAAACCTTACTTCA+AGG | + | Chr5:29599648-29599667 | MsG0580026039.01.T01:CDS | 40.0% | |
| CCCTTGAAGTAAGGTTTGTA+AGG | - | Chr5:29599652-29599671 | None:intergenic | 40.0% | |
| GCCACCCATCGATAATTATA+TGG | + | Chr5:29598943-29598962 | MsG0580026039.01.T01:CDS | 40.0% | |
| TCTGAAGGGATCATTAGCAT+AGG | - | Chr5:29598743-29598762 | None:intergenic | 40.0% | |
| TGTTATTCAAGTGACCCTTG+GGG | + | Chr5:29599211-29599230 | MsG0580026039.01.T01:CDS | 40.0% | |
| TTATGAAAGCTAGACAGCCA+CGG | - | Chr5:29599066-29599085 | None:intergenic | 40.0% | |
| TTTCTGGACTCTTCTCTGAA+GGG | - | Chr5:29598757-29598776 | None:intergenic | 40.0% | |
| ! | CACTTGGGAGAATCCTTTTA+AGG | + | Chr5:29598901-29598920 | MsG0580026039.01.T01:CDS | 40.0% |
| ! | CCTAGAGGTCCTTTTGATAT+GGG | + | Chr5:29599586-29599605 | MsG0580026039.01.T01:CDS | 40.0% |
| ! | TCCTAGAGGTCCTTTTGATA+TGG | + | Chr5:29599585-29599604 | MsG0580026039.01.T01:CDS | 40.0% |
| ! | TTTTCTGGACTCTTCTCTGA+AGG | - | Chr5:29598758-29598777 | None:intergenic | 40.0% |
| !! | TCAAAAGGACCTCTAGGATA+AGG | - | Chr5:29599583-29599602 | None:intergenic | 40.0% |
| AAAAGGTGGCACAACCCATA+TGG | - | Chr5:29599686-29599705 | None:intergenic | 45.0% | |
| AAAGGTGGCACAACCCATAT+GGG | - | Chr5:29599685-29599704 | None:intergenic | 45.0% | |
| AATCATTGGAGGGAGAGTTG+TGG | + | Chr5:29599308-29599327 | MsG0580026039.01.T01:CDS | 45.0% | |
| CCCATATCAAAAGGACCTCT+AGG | - | Chr5:29599589-29599608 | None:intergenic | 45.0% | |
| GAATTCTTTCCTCACCCCAA+GGG | - | Chr5:29599228-29599247 | None:intergenic | 45.0% | |
| GCTGCAACCACATAATCATC+TGG | - | Chr5:29599031-29599050 | None:intergenic | 45.0% | |
| TATGAAAGCTAGACAGCCAC+GGG | - | Chr5:29599065-29599084 | None:intergenic | 45.0% | |
| TCGATGGGTGGCAAACTAAT+AGG | - | Chr5:29598935-29598954 | None:intergenic | 45.0% | |
| ! | GGTGTCATACCCTTGAAGTA+AGG | - | Chr5:29599661-29599680 | None:intergenic | 45.0% |
| AGGGTATGACACCTCCCATA+TGG | + | Chr5:29599668-29599687 | MsG0580026039.01.T01:CDS | 50.0% | |
| ATTGGAGGGAGAGTTGTGGA+TGG | + | Chr5:29599312-29599331 | MsG0580026039.01.T01:CDS | 50.0% | |
| GAGAGTTGTGGATGGTGAGA+AGG | + | Chr5:29599320-29599339 | MsG0580026039.01.T01:CDS | 50.0% | |
| GCAGCAATTTACACTACCCG+TGG | + | Chr5:29599046-29599065 | MsG0580026039.01.T01:CDS | 50.0% | |
| GGAATTCTTTCCTCACCCCA+AGG | - | Chr5:29599229-29599248 | None:intergenic | 50.0% | |
| GGGTATGACACCTCCCATAT+GGG | + | Chr5:29599669-29599688 | MsG0580026039.01.T01:CDS | 50.0% | |
| GTTGTGGATCAAGTCATGGC+TGG | + | Chr5:29598849-29598868 | MsG0580026039.01.T01:CDS | 50.0% | |
| TGGTGTATGCCGTAACTCGT+TGG | + | Chr5:29599164-29599183 | MsG0580026039.01.T01:CDS | 50.0% | |
| !! | GGACCTCTAGGATAAGGAAC+CGG | - | Chr5:29599577-29599596 | None:intergenic | 50.0% |
| !! | GTACCGGTTCCTTATCCTAG+AGG | + | Chr5:29599571-29599590 | MsG0580026039.01.T01:CDS | 50.0% |
| TTCAAGTGACCCTTGGGGTG+AGG | + | Chr5:29599216-29599235 | MsG0580026039.01.T01:CDS | 55.0% | |
| ! | GGGTTGTGCCACCTTTTCAG+TGG | + | Chr5:29599689-29599708 | MsG0580026039.01.T01:CDS | 55.0% |
| GGTGGCACAACCCATATGGG+AGG | - | Chr5:29599682-29599701 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 29598575 | 29599717 | 29598575 | ID=MsG0580026039.01;Name=MsG0580026039.01 |
| Chr5 | mRNA | 29598575 | 29599717 | 29598575 | ID=MsG0580026039.01.T01;Parent=MsG0580026039.01;Name=MsG0580026039.01.T01;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|380 |
| Chr5 | exon | 29598575 | 29599717 | 29598575 | ID=MsG0580026039.01.T01:exon:7151;Parent=MsG0580026039.01.T01 |
| Chr5 | CDS | 29598575 | 29599717 | 29598575 | ID=MsG0580026039.01.T01:cds;Parent=MsG0580026039.01.T01 |
| Gene Sequence |
| Protein sequence |