AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027937.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027937.01.T01 MTR_5g065880 57.346 211 48 4 3 171 407 617 7.66e-64 206
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027937.01.T01 AT4G24620 53.110 209 56 4 5 171 405 613 1.76e-58 192
MsG0580027937.01.T01 AT4G24620 50.000 142 31 3 5 106 405 546 3.25e-31 118

Find 34 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACAAGATTATTGCTCATA+TGG 0.305392 5:+71500063 MsG0580027937.01.T01:CDS
ACTGAATCTGATAATCAATT+AGG 0.320568 5:+71497050 MsG0580027937.01.T01:CDS
AATCAAGGAATTAGTGTCTA+TGG 0.341364 5:+71495653 MsG0580027937.01.T01:CDS
ATTAGTGTCTATGGAAATAA+AGG 0.353205 5:+71495662 MsG0580027937.01.T01:CDS
GATAGACCACCGGTCATGAT+TGG 0.405007 5:+71495853 MsG0580027937.01.T01:CDS
TTGATTTCACAGGTTAATCA+AGG 0.441570 5:+71495638 MsG0580027937.01.T01:CDS
ACATGTGGTGACTACCTGTT+TGG 0.444640 5:+71495894 MsG0580027937.01.T01:CDS
CATGATTGGGAGCTTGAACC+AGG 0.481914 5:+71495867 MsG0580027937.01.T01:CDS
AGCAATTAGTGCTCTGTCGT+TGG 0.487702 5:-71500089 None:intergenic
ATAGACCACCGGTCATGATT+GGG 0.492586 5:+71495854 MsG0580027937.01.T01:CDS
AGCACTTCAAAAGCGGGTGC+TGG 0.509019 5:+71497109 MsG0580027937.01.T01:CDS
AGACCTGTAGCATACCAAAC+AGG 0.535335 5:-71495908 None:intergenic
GTGCTAAACGAGGCAAGGTA+TGG 0.537593 5:+71497134 MsG0580027937.01.T01:CDS
GAAGCTGGTAAGAAAGCGGC+AGG 0.544867 5:+71497077 MsG0580027937.01.T01:CDS
TTTCTTTGCGACATTCATTG+AGG 0.554257 5:+71495822 MsG0580027937.01.T01:CDS
AGTATTAGCACTTCAAAAGC+GGG 0.558394 5:+71497103 MsG0580027937.01.T01:CDS
AATCAATTAGGTGTGGAAGC+TGG 0.562966 5:+71497062 MsG0580027937.01.T01:CDS
TTCAAGCTCCCAATCATGAC+CGG 0.572793 5:-71495862 None:intergenic
AAGGTAACTGTGGTTCTCCA+AGG 0.586957 5:+71500113 MsG0580027937.01.T01:CDS
TACATTCAGCAACTGAGGGA+AGG 0.606484 5:+71495790 MsG0580027937.01.T01:CDS
ATCTGATAATCAATTAGGTG+TGG 0.609742 5:+71497055 MsG0580027937.01.T01:CDS
AAGTATTAGCACTTCAAAAG+CGG 0.617434 5:+71497102 MsG0580027937.01.T01:CDS
ACAGATACATTCAGCAACTG+AGG 0.617577 5:+71495785 MsG0580027937.01.T01:intron
TAATTGATTATCAGATTCAG+TGG 0.619124 5:-71497048 None:intergenic
TGGCAGTGCTAAACGAGGCA+AGG 0.624409 5:+71497129 MsG0580027937.01.T01:CDS
TAGTCACCACATGTAACACC+TGG 0.641754 5:-71495885 None:intergenic
CAGATACATTCAGCAACTGA+GGG 0.642015 5:+71495786 MsG0580027937.01.T01:intron
CTAATTGCTGAAGGTAACTG+TGG 0.644664 5:+71500103 MsG0580027937.01.T01:CDS
GACAGAGCACTAATTGCTGA+AGG 0.656685 5:+71500094 MsG0580027937.01.T01:CDS
TGTGGAAGCTGGTAAGAAAG+CGG 0.664025 5:+71497073 MsG0580027937.01.T01:CDS
AAGCTCCCAATCATGACCGG+TGG 0.669097 5:-71495859 None:intergenic
GGTGCTGGCAGTGCTAAACG+AGG 0.669860 5:+71497124 MsG0580027937.01.T01:CDS
GGTGCTACGTGATAGACCAC+CGG 0.678274 5:+71495843 MsG0580027937.01.T01:CDS
CTTGAACCAGGTGTTACATG+TGG 0.724327 5:+71495879 MsG0580027937.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTCAAAAATTCA+TGG - Chr5:71498401-71498420 None:intergenic 10.0%
!! AAAAAAATTCAAAAATTCAT+GGG - Chr5:71498400-71498419 None:intergenic 10.0%
!! CTTAATTGAAAAAATAATAT+AGG - Chr5:71499932-71499951 None:intergenic 10.0%
!! GAAAAAAACAATTAAAAAAT+TGG + Chr5:71496616-71496635 MsG0580027937.01.T01:intron 10.0%
!! TAATTGAAAAAATAATATAG+GGG - Chr5:71499930-71499949 None:intergenic 10.0%
!! TAATTTAGTTAATATACTAA+CGG + Chr5:71498765-71498784 MsG0580027937.01.T01:intron 10.0%
!! TATATATATATATAAGAGTT+TGG - Chr5:71498723-71498742 None:intergenic 10.0%
!! TTGTAATAACAAATAAAAAA+AGG + Chr5:71499299-71499318 MsG0580027937.01.T01:intron 10.0%
!!! TTCATTTTTGATATAAAAAA+AGG + Chr5:71496722-71496741 MsG0580027937.01.T01:intron 10.0%
!!! TTTTTTATGATAATAAACAA+AGG - Chr5:71497699-71497718 None:intergenic 10.0%
!!! TTTTTTTATATCAAAAATGA+AGG - Chr5:71496723-71496742 None:intergenic 10.0%
!! ATAAAAAAAAATTGCAGTTA+AGG - Chr5:71499812-71499831 None:intergenic 15.0%
!! ATAACATTAGAAATTAGATT+TGG - Chr5:71496692-71496711 None:intergenic 15.0%
!! TATGATGAATTTATCTATTA+TGG - Chr5:71498564-71498583 None:intergenic 15.0%
!!! AAAAGAAAAAAGTATTTTAG+AGG + Chr5:71499076-71499095 MsG0580027937.01.T01:intron 15.0%
!!! AAAGAAAAAAGTATTTTAGA+GGG + Chr5:71499077-71499096 MsG0580027937.01.T01:intron 15.0%
!!! ATTATACTATCAACAAATTT+TGG - Chr5:71496808-71496827 None:intergenic 15.0%
!!! TCAATAGAATATTTTATGTA+TGG - Chr5:71498475-71498494 None:intergenic 15.0%
!!! TTGTTGATAGTATAATTATT+AGG + Chr5:71496812-71496831 MsG0580027937.01.T01:intron 15.0%
!!! TTTTATTTGTTATTACAAGT+AGG - Chr5:71499297-71499316 None:intergenic 15.0%
!! ACAATTAAAAAATTGGGTAT+TGG + Chr5:71496623-71496642 MsG0580027937.01.T01:intron 20.0%
!! TCAACCAAACTTAAAAAAAA+TGG - Chr5:71495719-71495738 None:intergenic 20.0%
!! TCTAAATATTATCTTCTTCA+AGG + Chr5:71497825-71497844 MsG0580027937.01.T01:intron 20.0%
!! TGTAAGAATCATATCTATTA+TGG - Chr5:71498587-71498606 None:intergenic 20.0%
!!! AAAAACTCACTTTTTTAGAT+AGG + Chr5:71497716-71497735 MsG0580027937.01.T01:intron 20.0%
!!! ATACTTTTTTCTTTTGTCAA+CGG - Chr5:71499071-71499090 None:intergenic 20.0%
!!! CATTCCATTTTTTTTAAGTT+TGG + Chr5:71495712-71495731 MsG0580027937.01.T01:intron 20.0%
!!! GTGTGTTTCTATTTTTTTTT+TGG + Chr5:71497587-71497606 MsG0580027937.01.T01:intron 20.0%
!!! TCTTTAAAGTTGAATTTTGT+AGG - Chr5:71498451-71498470 None:intergenic 20.0%
!!! TTATGTTTCCTTTTCATTTT+CGG + Chr5:71499653-71499672 MsG0580027937.01.T01:intron 20.0%
!!! TTTTCTCTTTAGTTCATTTT+AGG + Chr5:71496228-71496247 MsG0580027937.01.T01:intron 20.0%
! AAAAAAATTGCAGTTAAGGA+TGG - Chr5:71499808-71499827 None:intergenic 25.0%
! AACAAAACTAATAAAGTAGG+TGG - Chr5:71497010-71497029 None:intergenic 25.0%
! AACATAGAAGAGAAACAAAA+CGG + Chr5:71496563-71496582 MsG0580027937.01.T01:intron 25.0%
! ACTGAATCTGATAATCAATT+AGG + Chr5:71497050-71497069 MsG0580027937.01.T01:CDS 25.0%
! AGCAACAAAACTAATAAAGT+AGG - Chr5:71497013-71497032 None:intergenic 25.0%
! ATATATAAGAGTTTGGACTT+TGG - Chr5:71498716-71498735 None:intergenic 25.0%
! ATTAGTGTCTATGGAAATAA+AGG + Chr5:71495662-71495681 MsG0580027937.01.T01:CDS 25.0%
! CAAATAAATCTATTACTGAC+TGG + Chr5:71499111-71499130 MsG0580027937.01.T01:intron 25.0%
! CAATTAAAACACAAACTGAT+AGG - Chr5:71497749-71497768 None:intergenic 25.0%
! CCATATTAAAACCAACAAAA+AGG + Chr5:71498506-71498525 MsG0580027937.01.T01:intron 25.0%
! TAAAAAACAATGTTTCCACA+GGG + Chr5:71496042-71496061 MsG0580027937.01.T01:intron 25.0%
! TAATTGATTATCAGATTCAG+TGG - Chr5:71497051-71497070 None:intergenic 25.0%
! TAGTTAATATACTAACGGTA+CGG + Chr5:71498770-71498789 MsG0580027937.01.T01:intron 25.0%
! TGTCTTAGCTAGAAATATAT+TGG + Chr5:71497189-71497208 MsG0580027937.01.T01:intron 25.0%
! TTACAAGATTATTGCTCATA+TGG + Chr5:71500063-71500082 MsG0580027937.01.T01:CDS 25.0%
! TTATTGTTAGATCTTTCTGT+TGG + Chr5:71496298-71496317 MsG0580027937.01.T01:intron 25.0%
! TTTGCATTATGTCAAGAATT+CGG - Chr5:71496895-71496914 None:intergenic 25.0%
!! AATAAAGTTATGATTGGTTG+CGG - Chr5:71497907-71497926 None:intergenic 25.0%
!! AATACAAAAGTACAAGCAAA+TGG - Chr5:71497651-71497670 None:intergenic 25.0%
!! ACTAAATTTTAAGCATCAAG+TGG + Chr5:71497276-71497295 MsG0580027937.01.T01:intron 25.0%
!! CTAAATTTTAAGCATCAAGT+GGG + Chr5:71497277-71497296 MsG0580027937.01.T01:intron 25.0%
!! GCAACAAGTTTTACAATAAA+TGG + Chr5:71499010-71499029 MsG0580027937.01.T01:intron 25.0%
!! TATGTAAGAATCCTTTTTGT+TGG - Chr5:71498520-71498539 None:intergenic 25.0%
!! TTGGAGATTTTTATGCTTTT+TGG - Chr5:71498671-71498690 None:intergenic 25.0%
!!! AATTTTTAAAAGAATGGCTG+TGG + Chr5:71495987-71496006 MsG0580027937.01.T01:intron 25.0%
!!! CAATGTTTTTGTAGAGAATA+AGG - Chr5:71499774-71499793 None:intergenic 25.0%
!!! CCTTTTTGTTGGTTTTAATA+TGG - Chr5:71498509-71498528 None:intergenic 25.0%
!!! CTATCAGTTTGTGTTTTAAT+TGG + Chr5:71497747-71497766 MsG0580027937.01.T01:intron 25.0%
!!! TAGTTCATTTTAGGATTCTA+TGG + Chr5:71496237-71496256 MsG0580027937.01.T01:intron 25.0%
!!! TATGCTTTTTGGATGTTTTT+TGG - Chr5:71498660-71498679 None:intergenic 25.0%
!!! TATTGTAAAACTTGTTGCTT+TGG - Chr5:71499008-71499027 None:intergenic 25.0%
!!! TGGGTAGTTTTTTTTTGAAT+CGG + Chr5:71498112-71498131 MsG0580027937.01.T01:intron 25.0%
!!! TTTGGATGTTTTTTGGATTT+TGG - Chr5:71498653-71498672 None:intergenic 25.0%
!!! TTTTTTTATTTTCAGCTGCA+AGG + Chr5:71499823-71499842 MsG0580027937.01.T01:intron 25.0%
!!! TTTTTTTTGGCTTCTAGTTT+GGG + Chr5:71497600-71497619 MsG0580027937.01.T01:intron 25.0%
!!! TTTTTTTTTGGCTTCTAGTT+TGG + Chr5:71497599-71497618 MsG0580027937.01.T01:intron 25.0%
AAAGAGAAAATATGCTTACC+AGG - Chr5:71496218-71496237 None:intergenic 30.0%
AAGTATTAGCACTTCAAAAG+CGG + Chr5:71497102-71497121 MsG0580027937.01.T01:CDS 30.0%
AATCAAGGAATTAGTGTCTA+TGG + Chr5:71495653-71495672 MsG0580027937.01.T01:CDS 30.0%
ATCTGATAATCAATTAGGTG+TGG + Chr5:71497055-71497074 MsG0580027937.01.T01:CDS 30.0%
CAACATACTAGAAAACGAAT+TGG - Chr5:71496418-71496437 None:intergenic 30.0%
CTAAAAAACAATGTTTCCAC+AGG + Chr5:71496041-71496060 MsG0580027937.01.T01:intron 30.0%
GAAACCATACTGTAACAAAT+TGG - Chr5:71497361-71497380 None:intergenic 30.0%
GCTACTTGCAAATAACAAAT+GGG + Chr5:71499433-71499452 MsG0580027937.01.T01:intron 30.0%
GGCAGTAATAAAGTTATGAT+TGG - Chr5:71497913-71497932 None:intergenic 30.0%
GTACAATACACTAAAATGGT+GGG - Chr5:71499373-71499392 None:intergenic 30.0%
GTAGTTTAAAGGAAGTCAAA+TGG + Chr5:71497560-71497579 MsG0580027937.01.T01:intron 30.0%
GTTACTACTGAGTAGTTTAA+AGG + Chr5:71497549-71497568 MsG0580027937.01.T01:intron 30.0%
TACTCAGTAGTAACAAATAG+CGG - Chr5:71497543-71497562 None:intergenic 30.0%
TCCTAAAAAAGTCACTAGTT+TGG - Chr5:71497934-71497953 None:intergenic 30.0%
TGTAATTTGACTCCAAATGA+TGG - Chr5:71499137-71499156 None:intergenic 30.0%
TGTTATGTTACTCTCAAGTA+GGG + Chr5:71498225-71498244 MsG0580027937.01.T01:intron 30.0%
TTGATTTCACAGGTTAATCA+AGG + Chr5:71495638-71495657 MsG0580027937.01.T01:CDS 30.0%
TTGGAGTTGTGTATCTAATA+AGG - Chr5:71496673-71496692 None:intergenic 30.0%
TTGTTATGTTACTCTCAAGT+AGG + Chr5:71498224-71498243 MsG0580027937.01.T01:intron 30.0%
TTTAACTACCCGTTTCTTTA+TGG - Chr5:71498836-71498855 None:intergenic 30.0%
! TAGATTTATTTGTTGACTGC+TGG - Chr5:71499103-71499122 None:intergenic 30.0%
! TTAGGCTTCTCTCTTTTATT+TGG - Chr5:71498690-71498709 None:intergenic 30.0%
!! AGAACCAATTTGTTACAGTA+TGG + Chr5:71497354-71497373 MsG0580027937.01.T01:intron 30.0%
!! AGAGAGCTAATTTGCTATAT+GGG + Chr5:71499605-71499624 MsG0580027937.01.T01:intron 30.0%
!!! AAATACCCGTTTATTTTACC+CGG + Chr5:71498853-71498872 MsG0580027937.01.T01:intron 30.0%
!!! ACTTGCTTTTTAACTTGTCT+TGG + Chr5:71496274-71496293 MsG0580027937.01.T01:intron 30.0%
!!! AGTTTAGGTAGTTTTTTAGG+TGG + Chr5:71499228-71499247 MsG0580027937.01.T01:intron 30.0%
!!! TTTTAGGATTCTATGGATCT+TGG + Chr5:71496244-71496263 MsG0580027937.01.T01:intron 30.0%
!!! TTTTTTTTTGAATCGGCCTT+GGG + Chr5:71498119-71498138 MsG0580027937.01.T01:intron 30.0%
ACTTGCAAATAACAAATGGG+AGG + Chr5:71499436-71499455 MsG0580027937.01.T01:intron 35.0%
AGCATTTATGTTGACAAGTG+AGG - Chr5:71496186-71496205 None:intergenic 35.0%
AGCCTCTTGTGTAAAAAACA+GGG - Chr5:71499405-71499424 None:intergenic 35.0%
AGTATTAGCACTTCAAAAGC+GGG + Chr5:71497103-71497122 MsG0580027937.01.T01:CDS 35.0%
ATAAGGACGCTAAGTACAAA+AGG - Chr5:71499757-71499776 None:intergenic 35.0%
ATCTTCTTCAAGGACAATCT+AGG + Chr5:71497835-71497854 MsG0580027937.01.T01:intron 35.0%
CGTACAATACACTAAAATGG+TGG - Chr5:71499374-71499393 None:intergenic 35.0%
CTGCGTACAATACACTAAAA+TGG - Chr5:71499377-71499396 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG - Chr5:71499400-71499419 None:intergenic 35.0%
GATAACACATCACTAGAACA+AGG + Chr5:71497952-71497971 MsG0580027937.01.T01:intron 35.0%
GCAAGGAAGATGTAATAGTT+TGG + Chr5:71498011-71498030 MsG0580027937.01.T01:intron 35.0%
GCTACTTCTTCAATTGTCAA+TGG - Chr5:71499860-71499879 None:intergenic 35.0%
GCTATAAGCCGAAAATGAAA+AGG - Chr5:71499664-71499683 None:intergenic 35.0%
GCTTTGCAAAAAAAAAGGGA+AGG + Chr5:71497302-71497321 MsG0580027937.01.T01:intron 35.0%
GGAGGCTTTGCAAAAAAAAA+GGG + Chr5:71497298-71497317 MsG0580027937.01.T01:intron 35.0%
GGCTACTTGCAAATAACAAA+TGG + Chr5:71499432-71499451 MsG0580027937.01.T01:intron 35.0%
GTAACAAATAGCGGTTATTG+TGG - Chr5:71497534-71497553 None:intergenic 35.0%
GTAGGATTAGAAATCCTCAT+AGG - Chr5:71497864-71497883 None:intergenic 35.0%
TACAAAAACATTGTCCCGTT+AGG + Chr5:71499781-71499800 MsG0580027937.01.T01:intron 35.0%
TAGCCTCTTGTGTAAAAAAC+AGG - Chr5:71499406-71499425 None:intergenic 35.0%
TATCTCTATACGGTAATCCA+CGG + Chr5:71498344-71498363 MsG0580027937.01.T01:intron 35.0%
TCAATTGTCAATGGTTCAAC+AGG - Chr5:71499851-71499870 None:intergenic 35.0%
TCACTAGAACAAGGAGTTTA+AGG + Chr5:71497961-71497980 MsG0580027937.01.T01:intron 35.0%
TCGTACTAAATAGCATATCG+CGG + Chr5:71497469-71497488 MsG0580027937.01.T01:intron 35.0%
TGAGAGAAACCAAAACACAT+TGG + Chr5:71498164-71498183 MsG0580027937.01.T01:intron 35.0%
TGTATCTAATAAGGTCACGT+GGG - Chr5:71496664-71496683 None:intergenic 35.0%
TTAGATTTGTGGATCTGGTT+TGG + Chr5:71497228-71497247 MsG0580027937.01.T01:intron 35.0%
TTCAACCTTATCTTGGGAAT+GGG + Chr5:71498093-71498112 MsG0580027937.01.T01:intron 35.0%
TTTCTTTGCGACATTCATTG+AGG + Chr5:71495822-71495841 MsG0580027937.01.T01:CDS 35.0%
! AATTGCGTATTTGGTGACTA+TGG + Chr5:71496948-71496967 MsG0580027937.01.T01:intron 35.0%
! AATTTTAAGCATCAAGTGGG+AGG + Chr5:71497280-71497299 MsG0580027937.01.T01:intron 35.0%
! AGCTTTGTATTCTAATGACC+GGG + Chr5:71496074-71496093 MsG0580027937.01.T01:intron 35.0%
! CAGCTTTGTATTCTAATGAC+CGG + Chr5:71496073-71496092 MsG0580027937.01.T01:intron 35.0%
! CTGTTGTTTGTAAACCTAGA+TGG + Chr5:71497783-71497802 MsG0580027937.01.T01:intron 35.0%
! GAGGAAAATTAGTTTGAAGG+GGG + Chr5:71499455-71499474 MsG0580027937.01.T01:intron 35.0%
! GGAGGAAAATTAGTTTGAAG+GGG + Chr5:71499454-71499473 MsG0580027937.01.T01:intron 35.0%
! GGGAGGAAAATTAGTTTGAA+GGG + Chr5:71499453-71499472 MsG0580027937.01.T01:intron 35.0%
! GTTAGATCTTTCTGTTGGTT+TGG + Chr5:71496303-71496322 MsG0580027937.01.T01:intron 35.0%
! TAATAGTTTGGTGATCCAAG+CGG + Chr5:71498023-71498042 MsG0580027937.01.T01:intron 35.0%
! TAGAACAAGGAGTTTAAGGT+TGG + Chr5:71497965-71497984 MsG0580027937.01.T01:intron 35.0%
! TGGGAGGAAAATTAGTTTGA+AGG + Chr5:71499452-71499471 MsG0580027937.01.T01:intron 35.0%
! TTCATTTTCGGCTTATAGCT+TGG + Chr5:71499665-71499684 MsG0580027937.01.T01:intron 35.0%
! TTTTCTTTTGTCAACGGATC+TGG - Chr5:71499065-71499084 None:intergenic 35.0%
!! AAGGAGTTTAAGGTTGGTTT+AGG + Chr5:71497971-71497990 MsG0580027937.01.T01:intron 35.0%
!! AGGAGTTTAAGGTTGGTTTA+GGG + Chr5:71497972-71497991 MsG0580027937.01.T01:intron 35.0%
!! ATGCTTGTGTTCTGGAATTA+TGG + Chr5:71498066-71498085 MsG0580027937.01.T01:intron 35.0%
!! GAGAGAGCTAATTTGCTATA+TGG + Chr5:71499604-71499623 MsG0580027937.01.T01:intron 35.0%
!! GAGAGCTAATTTGCTATATG+GGG + Chr5:71499606-71499625 MsG0580027937.01.T01:intron 35.0%
!! TGCTTGTGTTCTGGAATTAT+GGG + Chr5:71498067-71498086 MsG0580027937.01.T01:intron 35.0%
!! TGGTTGTATGGGTTTTGATA+AGG + Chr5:71497248-71497267 MsG0580027937.01.T01:intron 35.0%
!! TGTATGGGTTTTGATAAGGA+GGG + Chr5:71497252-71497271 MsG0580027937.01.T01:intron 35.0%
!! TTGTATGGGTTTTGATAAGG+AGG + Chr5:71497251-71497270 MsG0580027937.01.T01:intron 35.0%
!! TTTGTTATTTGCAAGTAGCC+TGG - Chr5:71499432-71499451 None:intergenic 35.0%
!!! AATACCCGTTTATTTTACCC+GGG + Chr5:71498854-71498873 MsG0580027937.01.T01:intron 35.0%
!!! GAGTTTGGACTTTGGTTTTT+AGG - Chr5:71498708-71498727 None:intergenic 35.0%
!!! GCCAAACTAGTGACTTTTTT+AGG + Chr5:71497930-71497949 MsG0580027937.01.T01:intron 35.0%
!!! GGCAGTTTAGGTAGTTTTTT+AGG + Chr5:71499225-71499244 MsG0580027937.01.T01:intron 35.0%
!!! GTTTTTTTTTGAATCGGCCT+TGG + Chr5:71498118-71498137 MsG0580027937.01.T01:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG + Chr5:71499400-71499419 MsG0580027937.01.T01:intron 35.0%
!!! TAGGTAGTTTTTTAGGTGGA+TGG + Chr5:71499232-71499251 MsG0580027937.01.T01:intron 35.0%
!!! TTGTGTTTTAATTGGCGAGA+GGG + Chr5:71497755-71497774 MsG0580027937.01.T01:intron 35.0%
!!! TTTGTGTTTTAATTGGCGAG+AGG + Chr5:71497754-71497773 MsG0580027937.01.T01:intron 35.0%
AAAGAATGGCTGTGGTTAGT+TGG + Chr5:71495995-71496014 MsG0580027937.01.T01:intron 40.0%
AACAGGGAAGAAGAAGAAGA+TGG + Chr5:71496489-71496508 MsG0580027937.01.T01:intron 40.0%
AACCAAAACACATTGGACCA+AGG + Chr5:71498171-71498190 MsG0580027937.01.T01:intron 40.0%
AACTACCCATTCCCAAGATA+AGG - Chr5:71498101-71498120 None:intergenic 40.0%
AATAATATAGGGGAGCAGTG+AGG - Chr5:71499920-71499939 None:intergenic 40.0%
AATCAATTAGGTGTGGAAGC+TGG + Chr5:71497062-71497081 MsG0580027937.01.T01:CDS 40.0%
ACAGATACATTCAGCAACTG+AGG + Chr5:71495785-71495804 MsG0580027937.01.T01:intron 40.0%
AGAAAAACTTTGACGCTCCT+TGG - Chr5:71500133-71500152 None:intergenic 40.0%
AGAAAATATGCTTACCAGGC+TGG - Chr5:71496214-71496233 None:intergenic 40.0%
ATAAATGCTTATCACCAGCC+TGG + Chr5:71496197-71496216 MsG0580027937.01.T01:intron 40.0%
ATATTGACCATGCTGTTCGT+AGG - Chr5:71499714-71499733 None:intergenic 40.0%
ATCTCTATACGGTAATCCAC+GGG + Chr5:71498345-71498364 MsG0580027937.01.T01:intron 40.0%
CAAGCAAATGGTCGTATCAA+TGG - Chr5:71497639-71497658 None:intergenic 40.0%
CAGATACATTCAGCAACTGA+GGG + Chr5:71495786-71495805 MsG0580027937.01.T01:intron 40.0%
CGGGTAGCATATTTATCCAA+CGG - Chr5:71498300-71498319 None:intergenic 40.0%
CTAATTGCTGAAGGTAACTG+TGG + Chr5:71500103-71500122 MsG0580027937.01.T01:CDS 40.0%
CTTCAACCTTATCTTGGGAA+TGG + Chr5:71498092-71498111 MsG0580027937.01.T01:intron 40.0%
GAAAACGAATTGGCACGAAT+TGG - Chr5:71496408-71496427 None:intergenic 40.0%
GGGAGGCTTTGCAAAAAAAA+AGG + Chr5:71497297-71497316 MsG0580027937.01.T01:intron 40.0%
GGGTAGCATATTTATCCAAC+GGG - Chr5:71498299-71498318 None:intergenic 40.0%
GGTAGCATATTTATCCAACG+GGG - Chr5:71498298-71498317 None:intergenic 40.0%
GGTTTCAATGTTGTCAATCG+TGG + Chr5:71497375-71497394 MsG0580027937.01.T01:intron 40.0%
GTATCAATGGTAAACTCCTG+TGG - Chr5:71497626-71497645 None:intergenic 40.0%
GTATCTAATAAGGTCACGTG+GGG - Chr5:71496663-71496682 None:intergenic 40.0%
GTATGTTGAAAGTGACGAAC+CGG + Chr5:71496430-71496449 MsG0580027937.01.T01:intron 40.0%
GTGTATCTAATAAGGTCACG+TGG - Chr5:71496665-71496684 None:intergenic 40.0%
GTGTCTTAGATTTGTGGATC+TGG + Chr5:71497223-71497242 MsG0580027937.01.T01:intron 40.0%
GTTGTAGTACTGTAGCATAG+TGG - Chr5:71497430-71497449 None:intergenic 40.0%
TACCCGTTTCTTTATGGACA+CGG - Chr5:71498830-71498849 None:intergenic 40.0%
TATCTAATAAGGTCACGTGG+GGG - Chr5:71496662-71496681 None:intergenic 40.0%
TCACCAAATACGCAATTCGT+CGG - Chr5:71496945-71496964 None:intergenic 40.0%
TCAGACGTGTCTTAGATTTG+TGG + Chr5:71497217-71497236 MsG0580027937.01.T01:intron 40.0%
TCGTTCATACAGTGCAACAA+GGG - Chr5:71496148-71496167 None:intergenic 40.0%
TCTCAAGTAGGGATGTCAAT+GGG + Chr5:71498236-71498255 MsG0580027937.01.T01:intron 40.0%
! AATAGTTTGGTGATCCAAGC+GGG + Chr5:71498024-71498043 MsG0580027937.01.T01:intron 40.0%
! ATTACTGACTGGCCATCATT+TGG + Chr5:71499122-71499141 MsG0580027937.01.T01:intron 40.0%
! ATTTTCTCCTTTCTGCCTTG+AGG + Chr5:71499198-71499217 MsG0580027937.01.T01:intron 40.0%
! CGTATTTGGTGACTATGGTT+TGG + Chr5:71496953-71496972 MsG0580027937.01.T01:intron 40.0%
! GCATCCACAACAGATTTGTT+CGG - Chr5:71498050-71498069 None:intergenic 40.0%
! GGCGAATGTTTTACATCTTC+TGG - Chr5:71499899-71499918 None:intergenic 40.0%
! TACCTTGGTCCAATGTGTTT+TGG - Chr5:71498176-71498195 None:intergenic 40.0%
! TCTTCCCTGTTTTCTCTTTC+TGG - Chr5:71496480-71496499 None:intergenic 40.0%
! TTACACAAGAGGCTATTTCC+AGG + Chr5:71499411-71499430 MsG0580027937.01.T01:intron 40.0%
! TTTGGAGTCAAATTACACCC+AGG + Chr5:71499140-71499159 MsG0580027937.01.T01:intron 40.0%
!! CTTGTGTTCTGGAATTATGG+GGG + Chr5:71498069-71498088 MsG0580027937.01.T01:intron 40.0%
!! GCTTGTGTTCTGGAATTATG+GGG + Chr5:71498068-71498087 MsG0580027937.01.T01:intron 40.0%
!! GTATGGGTTTTGATAAGGAG+GGG + Chr5:71497253-71497272 MsG0580027937.01.T01:intron 40.0%
!! TGGATCTGGTTTGGTTGTAT+GGG + Chr5:71497237-71497256 MsG0580027937.01.T01:intron 40.0%
!!! AGGAGCGTCAAAGTTTTTCT+CGG + Chr5:71500133-71500152 MsG0580027937.01.T01:CDS 40.0%
!!! AGTTTTTTAGGTGGATGGTC+CGG + Chr5:71499237-71499256 MsG0580027937.01.T01:intron 40.0%
!!! TGTGTTTTAATTGGCGAGAG+GGG + Chr5:71497756-71497775 MsG0580027937.01.T01:intron 40.0%
AAGGTAACTGTGGTTCTCCA+AGG + Chr5:71500113-71500132 MsG0580027937.01.T01:CDS 45.0%
ACATGTGGTGACTACCTGTT+TGG + Chr5:71495894-71495913 MsG0580027937.01.T01:CDS 45.0%
ACCCGTTTCTTTATGGACAC+GGG - Chr5:71498829-71498848 None:intergenic 45.0%
ACCGTATAGAGATACCCGTA+CGG - Chr5:71498338-71498357 None:intergenic 45.0%
AGACCTGTAGCATACCAAAC+AGG - Chr5:71495911-71495930 None:intergenic 45.0%
AGAGAGAGAAGAGAGAGAGA+GGG + Chr5:71499546-71499565 MsG0580027937.01.T01:intron 45.0%
AGCAATTAGTGCTCTGTCGT+TGG - Chr5:71500092-71500111 None:intergenic 45.0%
AGCATATCGCGGAACAATAG+CGG + Chr5:71497480-71497499 MsG0580027937.01.T01:intron 45.0%
AGCATATTTATCCAACGGGG+CGG - Chr5:71498295-71498314 None:intergenic 45.0%
AGCCACCAGAAAGAGAAAAC+AGG + Chr5:71496472-71496491 MsG0580027937.01.T01:intron 45.0%
AGGGAAGGAGAGTTAGTTAG+AGG + Chr5:71497317-71497336 MsG0580027937.01.T01:intron 45.0%
AGTCTTTCCTACGAACAGCA+TGG + Chr5:71499704-71499723 MsG0580027937.01.T01:intron 45.0%
ATAAAATCCGTCATGGGCAC+GGG - Chr5:71498899-71498918 None:intergenic 45.0%
ATAAGAAGGGGACAGATCAG+TGG + Chr5:71499266-71499285 MsG0580027937.01.T01:intron 45.0%
ATAGACCACCGGTCATGATT+GGG + Chr5:71495854-71495873 MsG0580027937.01.T01:CDS 45.0%
ATCTTCCTTGCGAAAGACAC+TGG - Chr5:71498002-71498021 None:intergenic 45.0%
ATGCAAACCCCTTGAGAGTA+GGG - Chr5:71498957-71498976 None:intergenic 45.0%
ATGCTGTTCGTAGGAAAGAC+TGG - Chr5:71499705-71499724 None:intergenic 45.0%
ATTACACCCAGGAAGTAACG+AGG + Chr5:71499151-71499170 MsG0580027937.01.T01:intron 45.0%
CAAAAATTCATGGGTACCCG+CGG - Chr5:71498391-71498410 None:intergenic 45.0%
CAAGAATTCGGTACGTGAGA+GGG - Chr5:71496883-71496902 None:intergenic 45.0%
CAATGTTTCCACAGGGAACA+AGG + Chr5:71496049-71496068 MsG0580027937.01.T01:intron 45.0%
CAGTTAAGGATGGACCTAAC+GGG - Chr5:71499798-71499817 None:intergenic 45.0%
CCACGGGTATTAAATACCCA+CGG + Chr5:71498361-71498380 MsG0580027937.01.T01:intron 45.0%
CGAATTGGCACGAATTGGTA+CGG - Chr5:71496403-71496422 None:intergenic 45.0%
CTACCTGTTTGGTATGCTAC+AGG + Chr5:71495905-71495924 MsG0580027937.01.T01:intron 45.0%
CTCGTTCATACAGTGCAACA+AGG - Chr5:71496149-71496168 None:intergenic 45.0%
CTCTCAAGTAGGGATGTCAA+TGG + Chr5:71498235-71498254 MsG0580027937.01.T01:intron 45.0%
GAAGTAACACCTCGATCAGT+TGG + Chr5:71496120-71496139 MsG0580027937.01.T01:intron 45.0%
GATAAAATCCGTCATGGGCA+CGG - Chr5:71498900-71498919 None:intergenic 45.0%
GATCTGGTACTCTCAGTAAC+TGG - Chr5:71499049-71499068 None:intergenic 45.0%
GCAGTTAAGGATGGACCTAA+CGG - Chr5:71499799-71499818 None:intergenic 45.0%
GCCACCAGAAAGAGAAAACA+GGG + Chr5:71496473-71496492 MsG0580027937.01.T01:intron 45.0%
GGAAAGACTGGAAAGTCATG+TGG - Chr5:71499693-71499712 None:intergenic 45.0%
GGAAGAAGAAGAAGATGGAG+CGG + Chr5:71496494-71496513 MsG0580027937.01.T01:intron 45.0%
GGGTACCCGGGTAAAATAAA+CGG - Chr5:71498862-71498881 None:intergenic 45.0%
GGTACCCGGGTAAAATAAAC+GGG - Chr5:71498861-71498880 None:intergenic 45.0%
GTCCCCTTCTTATAACCAAC+CGG - Chr5:71499259-71499278 None:intergenic 45.0%
TAAATACCCACGGATATCCG+CGG + Chr5:71498371-71498390 MsG0580027937.01.T01:intron 45.0%
TACATTCAGCAACTGAGGGA+AGG + Chr5:71495790-71495809 MsG0580027937.01.T01:CDS 45.0%
TACTCTCAAGGGGTTTGCAT+GGG + Chr5:71498957-71498976 MsG0580027937.01.T01:intron 45.0%
TAGTCACCACATGTAACACC+TGG - Chr5:71495888-71495907 None:intergenic 45.0%
TCAACTACTACCCATTCCCA+AGG - Chr5:71498138-71498157 None:intergenic 45.0%
TCAAGAATTCGGTACGTGAG+AGG - Chr5:71496884-71496903 None:intergenic 45.0%
TCGTGGATCGCGAAAAATAG+CGG + Chr5:71497392-71497411 MsG0580027937.01.T01:intron 45.0%
TGCCCGTGTCCATAAAGAAA+CGG + Chr5:71498824-71498843 MsG0580027937.01.T01:intron 45.0%
TGTGGAAGCTGGTAAGAAAG+CGG + Chr5:71497073-71497092 MsG0580027937.01.T01:CDS 45.0%
TGTTGTGGATGCTTGTGTTC+TGG + Chr5:71498058-71498077 MsG0580027937.01.T01:intron 45.0%
TTACACCCAGGAAGTAACGA+GGG + Chr5:71499152-71499171 MsG0580027937.01.T01:intron 45.0%
TTCAAGCTCCCAATCATGAC+CGG - Chr5:71495865-71495884 None:intergenic 45.0%
TTTCTTTATGGACACGGGCA+CGG - Chr5:71498824-71498843 None:intergenic 45.0%
TTTGAATCGGCCTTGGGAAT+GGG + Chr5:71498125-71498144 MsG0580027937.01.T01:intron 45.0%
! AGGGAAAGATGAAGCGGTTT+TGG + Chr5:71496533-71496552 MsG0580027937.01.T01:intron 45.0%
! CTTGAACCAGGTGTTACATG+TGG + Chr5:71495879-71495898 MsG0580027937.01.T01:CDS 45.0%
! GACAATCTAGGATGCCTATG+AGG + Chr5:71497847-71497866 MsG0580027937.01.T01:intron 45.0%
! GACAGAGCACTAATTGCTGA+AGG + Chr5:71500094-71500113 MsG0580027937.01.T01:CDS 45.0%
! GGTCCGGTTGGTTATAAGAA+GGG + Chr5:71499253-71499272 MsG0580027937.01.T01:intron 45.0%
! GTACCGACGAATTGCGTATT+TGG + Chr5:71496939-71496958 MsG0580027937.01.T01:intron 45.0%
! GTCCGGTTGGTTATAAGAAG+GGG + Chr5:71499254-71499273 MsG0580027937.01.T01:intron 45.0%
! TCCCTGTTTTCTCTTTCTGG+TGG - Chr5:71496477-71496496 None:intergenic 45.0%
! TGGTCCGGTTGGTTATAAGA+AGG + Chr5:71499252-71499271 MsG0580027937.01.T01:intron 45.0%
! TTTTGAATCGGCCTTGGGAA+TGG + Chr5:71498124-71498143 MsG0580027937.01.T01:intron 45.0%
!! GCTGTGGTTAGTTGGTAACT+TGG + Chr5:71496003-71496022 MsG0580027937.01.T01:intron 45.0%
!! GTGGATCTGGTTTGGTTGTA+TGG + Chr5:71497236-71497255 MsG0580027937.01.T01:intron 45.0%
!! TATACAGAGTCGGTTCGCTT+GGG - Chr5:71496860-71496879 None:intergenic 45.0%
!! TCGAGGTGTTACTTCTTGCA+CGG - Chr5:71496115-71496134 None:intergenic 45.0%
!! TTGTTGCTTTGGAAGCAGTG+TGG - Chr5:71498997-71499016 None:intergenic 45.0%
!!! AGATGAAGCGGTTTTGGCTT+TGG + Chr5:71496539-71496558 MsG0580027937.01.T01:intron 45.0%
!!! CGGTTTTGAAAACAGCGGAA+GGG + Chr5:71496514-71496533 MsG0580027937.01.T01:intron 45.0%
!!! GATGAAGCGGTTTTGGCTTT+GGG + Chr5:71496540-71496559 MsG0580027937.01.T01:intron 45.0%
!!! GTGTTTTAATTGGCGAGAGG+GGG + Chr5:71497757-71497776 MsG0580027937.01.T01:intron 45.0%
!!! GTTTTACATCTTCTGGAGCG+TGG - Chr5:71499892-71499911 None:intergenic 45.0%
!!! TGGAGCGGTTTTGAAAACAG+CGG + Chr5:71496509-71496528 MsG0580027937.01.T01:intron 45.0%
!! AAAAAAACAATTAAAAAATT+GGG + Chr5:71496617-71496636 MsG0580027937.01.T01:intron 5.0%
!! TTAATTGAAAAAATAATATA+GGG - Chr5:71499931-71499950 None:intergenic 5.0%
!!! TAAAATAAAAATACAAATTT+TGG - Chr5:71496777-71496796 None:intergenic 5.0%
!!! TATTAAAATTTTTAAAAGAA+TGG + Chr5:71495981-71496000 MsG0580027937.01.T01:intron 5.0%
AAAGCTGACCTTGTTCCCTG+TGG - Chr5:71496060-71496079 None:intergenic 50.0%
AAATACCCACGGATATCCGC+GGG + Chr5:71498372-71498391 MsG0580027937.01.T01:intron 50.0%
AACTCGTTGTGACGCCATCT+AGG - Chr5:71497800-71497819 None:intergenic 50.0%
ACCACGAGCTTCAGTCATGA+CGG + Chr5:71498196-71498215 MsG0580027937.01.T01:intron 50.0%
ACTGAAGCTCGTGGTTACCT+TGG - Chr5:71498191-71498210 None:intergenic 50.0%
AGAAGAGAGAGAGAGGGAGA+GGG + Chr5:71499552-71499571 MsG0580027937.01.T01:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + Chr5:71499478-71499497 MsG0580027937.01.T01:intron 50.0%
AGAGATACCCGTACGGGTAT+GGG - Chr5:71498331-71498350 None:intergenic 50.0%
AGCGGAAGGGAAAGATGAAG+CGG + Chr5:71496527-71496546 MsG0580027937.01.T01:intron 50.0%
ATACGCAATTCGTCGGTACG+TGG - Chr5:71496938-71496957 None:intergenic 50.0%
CATATTTATCCAACGGGGCG+GGG - Chr5:71498293-71498312 None:intergenic 50.0%
CATCTCCCTCGTTACTTCCT+GGG - Chr5:71499160-71499179 None:intergenic 50.0%
CATGATTGGGAGCTTGAACC+AGG + Chr5:71495867-71495886 MsG0580027937.01.T01:CDS 50.0%
CATGCAAACCCCTTGAGAGT+AGG - Chr5:71498958-71498977 None:intergenic 50.0%
CCCGTACGGGTATCTCTATA+CGG + Chr5:71498334-71498353 MsG0580027937.01.T01:intron 50.0%
CCGCGGATAAAATCCGTCAT+GGG - Chr5:71498905-71498924 None:intergenic 50.0%
CCGTATAGAGATACCCGTAC+GGG - Chr5:71498337-71498356 None:intergenic 50.0%
CCGTGGGTATTTAATACCCG+TGG - Chr5:71498364-71498383 None:intergenic 50.0%
CCTAAACTGCCTTGTCCTCA+AGG - Chr5:71499216-71499235 None:intergenic 50.0%
CCTTGAGGACAAGGCAGTTT+AGG + Chr5:71499213-71499232 MsG0580027937.01.T01:intron 50.0%
CGGCTCTCAACTATCAACGA+GGG - Chr5:71497887-71497906 None:intergenic 50.0%
CTAAAGCTCCTGCATACGCA+AGG + Chr5:71499334-71499353 MsG0580027937.01.T01:intron 50.0%
CTACTCTCAAGGGGTTTGCA+TGG + Chr5:71498956-71498975 MsG0580027937.01.T01:intron 50.0%
CTCAACTATCAACGAGGGGT+AGG - Chr5:71497882-71497901 None:intergenic 50.0%
GAACCGGTGAGGAAGAAGAT+CGG + Chr5:71496446-71496465 MsG0580027937.01.T01:intron 50.0%
GAATGCCAGTGTCTTTCGCA+AGG + Chr5:71497994-71498013 MsG0580027937.01.T01:intron 50.0%
GAGAGAGAGAAGAGAGAGAG+AGG + Chr5:71499545-71499564 MsG0580027937.01.T01:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + Chr5:71499477-71499496 MsG0580027937.01.T01:intron 50.0%
GATAGACCACCGGTCATGAT+TGG + Chr5:71495853-71495872 MsG0580027937.01.T01:CDS 50.0%
GCACTGTATGAACGAGCAGT+TGG + Chr5:71496153-71496172 MsG0580027937.01.T01:intron 50.0%
GCATATTTATCCAACGGGGC+GGG - Chr5:71498294-71498313 None:intergenic 50.0%
GCCCGTGTCCATAAAGAAAC+GGG + Chr5:71498825-71498844 MsG0580027937.01.T01:intron 50.0%
GGCTCTCAACTATCAACGAG+GGG - Chr5:71497886-71497905 None:intergenic 50.0%
GGGGGCTTCAACCTTATCTT+GGG + Chr5:71498087-71498106 MsG0580027937.01.T01:intron 50.0%
GTGCTAAACGAGGCAAGGTA+TGG + Chr5:71497134-71497153 MsG0580027937.01.T01:CDS 50.0%
TAAAATCCGTCATGGGCACG+GGG - Chr5:71498898-71498917 None:intergenic 50.0%
TACGGAAAAGAACCGCGAAC+CGG - Chr5:71496385-71496404 None:intergenic 50.0%
TAGAGATACCCGTACGGGTA+TGG - Chr5:71498332-71498351 None:intergenic 50.0%
TATCATACTACCCGTACCCG+CGG - Chr5:71498265-71498284 None:intergenic 50.0%
TCATCTCCCTCGTTACTTCC+TGG - Chr5:71499161-71499180 None:intergenic 50.0%
TCCTTTCTGCCTTGAGGACA+AGG + Chr5:71499204-71499223 MsG0580027937.01.T01:intron 50.0%
TGCAAACCCCTTGAGAGTAG+GGG - Chr5:71498956-71498975 None:intergenic 50.0%
TGGGGGCTTCAACCTTATCT+TGG + Chr5:71498086-71498105 MsG0580027937.01.T01:intron 50.0%
TTCTTGCACGGTGACTGTGA+TGG - Chr5:71496103-71496122 None:intergenic 50.0%
TTGAAAGTGACGAACCGGTG+AGG + Chr5:71496435-71496454 MsG0580027937.01.T01:intron 50.0%
TTTGCCACCCCTACTCTCAA+GGG + Chr5:71498946-71498965 MsG0580027937.01.T01:intron 50.0%
! CGTGAGAGGGTATACAGAGT+CGG - Chr5:71496870-71496889 None:intergenic 50.0%
! CTATGGTTTGGAAGCTTGCG+TGG + Chr5:71496965-71496984 MsG0580027937.01.T01:intron 50.0%
! TTTTGCCACCCCTACTCTCA+AGG + Chr5:71498945-71498964 MsG0580027937.01.T01:intron 50.0%
!! ATTGGTTCGCGGTTCTCATG+TGG - Chr5:71496353-71496372 None:intergenic 50.0%
!! GTATACAGAGTCGGTTCGCT+TGG - Chr5:71496861-71496880 None:intergenic 50.0%
!! TTTTAGGTGGATGGTCCGGT+TGG + Chr5:71499241-71499260 MsG0580027937.01.T01:intron 50.0%
!!! CCATGACGGATTTTATCCGC+GGG + Chr5:71498903-71498922 MsG0580027937.01.T01:intron 50.0%
!!! CCCATGACGGATTTTATCCG+CGG + Chr5:71498902-71498921 MsG0580027937.01.T01:intron 50.0%
!!! GCGGTTTTGAAAACAGCGGA+AGG + Chr5:71496513-71496532 MsG0580027937.01.T01:intron 50.0%
AAACCCCTTGAGAGTAGGGG+TGG - Chr5:71498953-71498972 None:intergenic 55.0%
AAGCTCCCAATCATGACCGG+TGG - Chr5:71495862-71495881 None:intergenic 55.0%
ACAAGGGCTCCAACTGATCG+AGG - Chr5:71496132-71496151 None:intergenic 55.0%
ACCGTCATGACTGAAGCTCG+TGG - Chr5:71498200-71498219 None:intergenic 55.0%
ACTAACGGTACGGATACCCG+CGG + Chr5:71498780-71498799 MsG0580027937.01.T01:intron 55.0%
AGAAGGGGACAGATCAGTGG+AGG + Chr5:71499269-71499288 MsG0580027937.01.T01:intron 55.0%
AGCACTTCAAAAGCGGGTGC+TGG + Chr5:71497109-71497128 MsG0580027937.01.T01:CDS 55.0%
ATCATACTACCCGTACCCGC+GGG - Chr5:71498264-71498283 None:intergenic 55.0%
CATACGCAAGGTTCGGGAAG+GGG + Chr5:71499346-71499365 MsG0580027937.01.T01:intron 55.0%
CCCGCGGATAAAATCCGTCA+TGG - Chr5:71498906-71498925 None:intergenic 55.0%
CGGGCCGAACAAATCTGTTG+TGG + Chr5:71498043-71498062 MsG0580027937.01.T01:intron 55.0%
CTCCTGCATACGCAAGGTTC+GGG + Chr5:71499340-71499359 MsG0580027937.01.T01:intron 55.0%
GAAGCTGGTAAGAAAGCGGC+AGG + Chr5:71497077-71497096 MsG0580027937.01.T01:CDS 55.0%
GAGAAGAGAGAGAGAGGGAG+AGG + Chr5:71499551-71499570 MsG0580027937.01.T01:intron 55.0%
GAGATACCCGTACGGGTATG+GGG - Chr5:71498330-71498349 None:intergenic 55.0%
GCAAAAAAATCCGTGCCCGC+GGG - Chr5:71498931-71498950 None:intergenic 55.0%
GCATACGCAAGGTTCGGGAA+GGG + Chr5:71499345-71499364 MsG0580027937.01.T01:intron 55.0%
GCCTTGTCCTCAAGGCAGAA+AGG - Chr5:71499208-71499227 None:intergenic 55.0%
GCGAACCAATTCGTGCGTAC+CGG + Chr5:71496363-71496382 MsG0580027937.01.T01:intron 55.0%
GCGGCTCTCAACTATCAACG+AGG - Chr5:71497888-71497907 None:intergenic 55.0%
GCTCCGATCTTCTTCCTCAC+CGG - Chr5:71496452-71496471 None:intergenic 55.0%
GCTCCTGCATACGCAAGGTT+CGG + Chr5:71499339-71499358 MsG0580027937.01.T01:intron 55.0%
GGCAAAAAAATCCGTGCCCG+CGG - Chr5:71498932-71498951 None:intergenic 55.0%
TGCATACGCAAGGTTCGGGA+AGG + Chr5:71499344-71499363 MsG0580027937.01.T01:intron 55.0%
TGGCAGTGCTAAACGAGGCA+AGG + Chr5:71497129-71497148 MsG0580027937.01.T01:CDS 55.0%
TTCCCGAACCTTGCGTATGC+AGG - Chr5:71499345-71499364 None:intergenic 55.0%
TTGCCACCCCTACTCTCAAG+GGG + Chr5:71498947-71498966 MsG0580027937.01.T01:intron 55.0%
! ACAGATTTGTTCGGCCCGCT+TGG - Chr5:71498041-71498060 None:intergenic 55.0%
! ATTTTATCCGCGGGTACCCG+CGG + Chr5:71498912-71498931 MsG0580027937.01.T01:intron 55.0%
! GGTGCTACGTGATAGACCAC+CGG + Chr5:71495843-71495862 MsG0580027937.01.T01:CDS 55.0%
! TTTGATGATACCCGTGCCCG+CGG - Chr5:71498800-71498819 None:intergenic 55.0%
!! AATTCGTGCGTACCGGTTCG+CGG + Chr5:71496370-71496389 MsG0580027937.01.T01:intron 55.0%
!! GGTACGCACGAATTGGTTCG+CGG - Chr5:71496364-71496383 None:intergenic 55.0%
!! TGGCTTCTAGTTTGGGCCAC+AGG + Chr5:71497607-71497626 MsG0580027937.01.T01:intron 55.0%
AGAGAGAGAGGGAGAGGGAG+AGG + Chr5:71499557-71499576 MsG0580027937.01.T01:intron 60.0%
CGGGTAGCTAAACGGGTACC+CGG - Chr5:71498875-71498894 None:intergenic 60.0%
CGGTACGTGGTACGAGTACG+CGG - Chr5:71496925-71496944 None:intergenic 60.0%
CTAACGGTACGGATACCCGC+GGG + Chr5:71498781-71498800 MsG0580027937.01.T01:intron 60.0%
GAGAGAGAGGGAGAGGGAGA+GGG + Chr5:71499558-71499577 MsG0580027937.01.T01:intron 60.0%
GCGAACCGGTACGCACGAAT+TGG - Chr5:71496371-71496390 None:intergenic 60.0%
GGATGTCAATGGGTACCCGC+GGG + Chr5:71498246-71498265 MsG0580027937.01.T01:intron 60.0%
GGGATGTCAATGGGTACCCG+CGG + Chr5:71498245-71498264 MsG0580027937.01.T01:intron 60.0%
GGGTAGCTAAACGGGTACCC+GGG - Chr5:71498874-71498893 None:intergenic 60.0%
TACCCGTACGGGTATGGGGA+CGG - Chr5:71498326-71498345 None:intergenic 60.0%
TACCCGTCCCCATACCCGTA+CGG + Chr5:71498320-71498339 MsG0580027937.01.T01:intron 60.0%
TACGGGTATGGGGACGGGTA+CGG - Chr5:71498320-71498339 None:intergenic 60.0%
TCAATGGGTACCCGCGGGTA+CGG + Chr5:71498251-71498270 MsG0580027937.01.T01:intron 60.0%
TGGTACGAGTACGCGGTACG+CGG - Chr5:71496918-71496937 None:intergenic 60.0%
TTTATCCAACGGGGCGGGGA+CGG - Chr5:71498289-71498308 None:intergenic 60.0%
! TTGATGATACCCGTGCCCGC+GGG - Chr5:71498799-71498818 None:intergenic 60.0%
! TTTTATCCGCGGGTACCCGC+GGG + Chr5:71498913-71498932 MsG0580027937.01.T01:intron 60.0%
!! CGGTGACTGTGATGGACTCC+CGG - Chr5:71496095-71496114 None:intergenic 60.0%
!! GGTGCTGGCAGTGCTAAACG+AGG + Chr5:71497124-71497143 MsG0580027937.01.T01:CDS 60.0%
AATCCGTCATGGGCACGGGG+CGG - Chr5:71498895-71498914 None:intergenic 65.0%
ACCCGTACGGGTATGGGGAC+GGG - Chr5:71498325-71498344 None:intergenic 65.0%
ACCCGTCCCCATACCCGTAC+GGG + Chr5:71498321-71498340 MsG0580027937.01.T01:intron 65.0%
ACGGGTATGGGGACGGGTAC+GGG - Chr5:71498319-71498338 None:intergenic 65.0%
AGAGGGAGAGGGAGAGGGAG+AGG + Chr5:71499563-71499582 MsG0580027937.01.T01:intron 65.0%
CAATGGGTACCCGCGGGTAC+GGG + Chr5:71498252-71498271 MsG0580027937.01.T01:intron 65.0%
CACGGGGCGGGTAGCTAAAC+GGG - Chr5:71498882-71498901 None:intergenic 65.0%
GAGGGAGAGGGAGAGGGAGA+GGG + Chr5:71499564-71499583 MsG0580027937.01.T01:intron 65.0%
GCACGGGGCGGGTAGCTAAA+CGG - Chr5:71498883-71498902 None:intergenic 65.0%
GGGTACCCGCGGATATCCGT+GGG - Chr5:71498380-71498399 None:intergenic 65.0%
TGGGTACCCGCGGATATCCG+TGG - Chr5:71498381-71498400 None:intergenic 65.0%
ATCCGTCATGGGCACGGGGC+GGG - Chr5:71498894-71498913 None:intergenic 70.0%
GATATCCGTCCCCGCCCCGT+TGG + Chr5:71498281-71498300 MsG0580027937.01.T01:intron 70.0%
GGTACGGATACCCGCGGGCA+CGG + Chr5:71498786-71498805 MsG0580027937.01.T01:intron 70.0%
GTACGGATACCCGCGGGCAC+GGG + Chr5:71498787-71498806 MsG0580027937.01.T01:intron 70.0%
TACCCGCCCCGTGCCCATGA+CGG + Chr5:71498889-71498908 MsG0580027937.01.T01:intron 70.0%
! TCCGCGGGTACCCGCGGGCA+CGG + Chr5:71498918-71498937 MsG0580027937.01.T01:intron 80.0%
! TCCGTGCCCGCGGGTACCCG+CGG - Chr5:71498922-71498941 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 71495638 71500186 71495638 ID=MsG0580027937.01;Name=MsG0580027937.01
Chr5 mRNA 71495638 71500186 71495638 ID=MsG0580027937.01.T01;Parent=MsG0580027937.01;Name=MsG0580027937.01.T01;_AED=0.47;_eAED=0.55;_QI=0|0.33|0|1|0.33|0.75|4|0|171
Chr5 exon 71495638 71495702 71495638 ID=MsG0580027937.01.T01:exon:4929;Parent=MsG0580027937.01.T01
Chr5 exon 71495789 71495915 71495789 ID=MsG0580027937.01.T01:exon:4930;Parent=MsG0580027937.01.T01
Chr5 exon 71497023 71497157 71497023 ID=MsG0580027937.01.T01:exon:4931;Parent=MsG0580027937.01.T01
Chr5 exon 71499998 71500186 71499998 ID=MsG0580027937.01.T01:exon:4932;Parent=MsG0580027937.01.T01
Chr5 CDS 71495638 71495702 71495638 ID=MsG0580027937.01.T01:cds;Parent=MsG0580027937.01.T01
Chr5 CDS 71495789 71495915 71495789 ID=MsG0580027937.01.T01:cds;Parent=MsG0580027937.01.T01
Chr5 CDS 71497023 71497157 71497023 ID=MsG0580027937.01.T01:cds;Parent=MsG0580027937.01.T01
Chr5 CDS 71499998 71500186 71499998 ID=MsG0580027937.01.T01:cds;Parent=MsG0580027937.01.T01
Gene Sequence

>MsG0580027937.01.T01

TTGATTTCACAGGTTAATCAAGGAATTAGTGTCTATGGAAATAAAGGAAGCACAGATCAGCATGCATACATTCAGCAACTGAGGGAAGGTGTACACAATTTCTTTGCGACATTCATTGAGGTGCTACGTGATAGACCACCGGTCATGATTGGGAGCTTGAACCAGGTGTTACATGTGGTGACTACCTGTTTGTTTTGTTGCTATCATGTTACTACTACCACTGAATCTGATAATCAATTAGGTGTGGAAGCTGGTAAGAAAGCGGCAGGAGAAGTATTAGCACTTCAAAAGCGGGTGCTGGCAGTGCTAAACGAGGCAAGGTATGGTATTGAAGTAATTTACAAGATTATTGCTCAAATCGTTACATATATACTTCTGCAGATTGAAGTAATTTACAAGATTATTGCTCATATGGCTGCCAACGACAGAGCACTAATTGCTGAAGGTAACTGTGGTTCTCCAAGGAGCGTCAAAGTTTTTCTCGGAGAGTGTAATGTTGATGAACTGTATGCATGA

Protein sequence

>MsG0580027937.01.T01

LISQVNQGISVYGNKGSTDQHAYIQQLREGVHNFFATFIEVLRDRPPVMIGSLNQVLHVVTTCLFCCYHVTTTTESDNQLGVEAGKKAAGEVLALQKRVLAVLNEARYGIEVIYKIIAQIVTYILLQIEVIYKIIAHMAANDRALIAEGNCGSPRSVKVFLGECNVDELYA*